Multiple sequence alignment - TraesCS5D01G005200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G005200 chr5D 100.000 4973 0 0 1 4973 3931733 3926761 0.000000e+00 9184.0
1 TraesCS5D01G005200 chr5D 84.503 1368 162 33 1323 2659 5102514 5101166 0.000000e+00 1306.0
2 TraesCS5D01G005200 chr5D 85.714 189 26 1 4352 4540 5099469 5099282 1.090000e-46 198.0
3 TraesCS5D01G005200 chr5D 90.210 143 13 1 4648 4790 5099221 5099080 8.500000e-43 185.0
4 TraesCS5D01G005200 chr5D 95.455 44 0 2 3049 3090 89059238 89059195 8.930000e-08 69.4
5 TraesCS5D01G005200 chr5D 100.000 35 0 0 4602 4636 3927100 3927066 1.160000e-06 65.8
6 TraesCS5D01G005200 chr5D 100.000 35 0 0 4634 4668 3927132 3927098 1.160000e-06 65.8
7 TraesCS5D01G005200 chr5A 95.928 2210 43 12 850 3026 4607904 4610099 0.000000e+00 3539.0
8 TraesCS5D01G005200 chr5A 96.566 1194 37 3 3049 4239 4610173 4611365 0.000000e+00 1975.0
9 TraesCS5D01G005200 chr5A 88.383 1231 106 13 3121 4341 4054885 4056088 0.000000e+00 1447.0
10 TraesCS5D01G005200 chr5A 83.864 1382 168 39 1302 2653 3725512 3726868 0.000000e+00 1266.0
11 TraesCS5D01G005200 chr5A 83.719 1382 169 40 1302 2653 3770679 3772034 0.000000e+00 1254.0
12 TraesCS5D01G005200 chr5A 83.634 1387 143 41 3087 4409 3980531 3979165 0.000000e+00 1227.0
13 TraesCS5D01G005200 chr5A 83.854 1313 155 38 1369 2653 3758145 3759428 0.000000e+00 1197.0
14 TraesCS5D01G005200 chr5A 82.164 1368 186 35 3303 4633 3799864 3801210 0.000000e+00 1122.0
15 TraesCS5D01G005200 chr5A 82.627 1157 155 24 3303 4434 3727190 3728325 0.000000e+00 981.0
16 TraesCS5D01G005200 chr5A 82.612 1156 156 24 3303 4434 3714168 3715302 0.000000e+00 979.0
17 TraesCS5D01G005200 chr5A 82.612 1156 156 24 3303 4434 3759749 3760883 0.000000e+00 979.0
18 TraesCS5D01G005200 chr5A 90.423 710 52 9 2356 3052 4054130 4054836 0.000000e+00 920.0
19 TraesCS5D01G005200 chr5A 95.400 413 14 3 4224 4636 4611382 4611789 0.000000e+00 652.0
20 TraesCS5D01G005200 chr5A 86.278 583 51 16 1145 1712 4053565 4054133 1.530000e-169 606.0
21 TraesCS5D01G005200 chr5A 80.837 741 99 30 1302 2018 3712974 3713695 4.380000e-150 542.0
22 TraesCS5D01G005200 chr5A 96.528 288 9 1 4634 4921 4611755 4612041 4.500000e-130 475.0
23 TraesCS5D01G005200 chr5A 85.882 170 17 5 291 453 4607297 4607466 1.840000e-39 174.0
24 TraesCS5D01G005200 chr5A 86.000 150 13 4 957 1099 4053406 4053554 2.400000e-33 154.0
25 TraesCS5D01G005200 chr5A 91.026 78 6 1 4713 4790 4056077 4056153 2.450000e-18 104.0
26 TraesCS5D01G005200 chr5A 93.548 62 3 1 4912 4973 4614432 4614492 1.910000e-14 91.6
27 TraesCS5D01G005200 chr5A 93.548 62 3 1 4912 4973 4621101 4621161 1.910000e-14 91.6
28 TraesCS5D01G005200 chr5A 95.000 40 1 1 793 832 4607867 4607905 1.490000e-05 62.1
29 TraesCS5D01G005200 chr4A 95.737 2205 50 14 850 3026 18681088 18683276 0.000000e+00 3511.0
30 TraesCS5D01G005200 chr4A 95.646 2205 52 14 850 3026 18647275 18649463 0.000000e+00 3500.0
31 TraesCS5D01G005200 chr4A 96.520 1178 39 2 3049 4225 18683352 18684528 0.000000e+00 1947.0
32 TraesCS5D01G005200 chr4A 96.350 1178 41 2 3049 4225 18649539 18650715 0.000000e+00 1936.0
33 TraesCS5D01G005200 chr4A 83.585 1389 140 49 3087 4409 17803855 17805221 0.000000e+00 1221.0
34 TraesCS5D01G005200 chr4A 79.074 1123 149 39 3219 4277 17846379 17845279 0.000000e+00 693.0
35 TraesCS5D01G005200 chr4A 95.143 350 13 2 4275 4624 18650711 18651056 2.620000e-152 549.0
36 TraesCS5D01G005200 chr4A 94.857 350 14 2 4275 4624 18684524 18684869 1.220000e-150 544.0
37 TraesCS5D01G005200 chr4A 96.865 319 8 2 4656 4973 18666078 18666395 2.640000e-147 532.0
38 TraesCS5D01G005200 chr4A 96.552 319 9 2 4656 4973 18691036 18691353 1.230000e-145 527.0
39 TraesCS5D01G005200 chr4A 81.579 266 33 12 1586 1836 17801726 17801990 6.530000e-49 206.0
40 TraesCS5D01G005200 chr4A 85.567 194 23 3 291 479 18680507 18680700 1.090000e-46 198.0
41 TraesCS5D01G005200 chr4A 92.500 40 2 1 793 832 18681051 18681089 6.950000e-04 56.5
42 TraesCS5D01G005200 chr4A 96.970 33 0 1 793 825 18647238 18647269 3.000000e-03 54.7
43 TraesCS5D01G005200 chr5B 89.076 1309 117 17 1764 3055 30838865 30837566 0.000000e+00 1602.0
44 TraesCS5D01G005200 chr5B 84.165 1402 151 36 1301 2659 6667561 6668934 0.000000e+00 1293.0
45 TraesCS5D01G005200 chr5B 89.357 949 82 7 3464 4407 30837211 30836277 0.000000e+00 1175.0
46 TraesCS5D01G005200 chr5B 85.242 1179 111 26 3279 4418 6853927 6852773 0.000000e+00 1155.0
47 TraesCS5D01G005200 chr5B 83.308 1330 136 42 3137 4409 48419481 48420781 0.000000e+00 1147.0
48 TraesCS5D01G005200 chr5B 81.633 1421 185 41 1324 2687 30941676 30940275 0.000000e+00 1109.0
49 TraesCS5D01G005200 chr5B 81.569 1096 144 26 1324 2373 31017520 31016437 0.000000e+00 852.0
50 TraesCS5D01G005200 chr5B 85.533 788 72 22 3653 4418 24666694 24665927 0.000000e+00 785.0
51 TraesCS5D01G005200 chr5B 83.790 839 73 40 943 1756 30839727 30838927 0.000000e+00 737.0
52 TraesCS5D01G005200 chr5B 86.598 388 37 9 3237 3622 24667199 24666825 9.960000e-112 414.0
53 TraesCS5D01G005200 chr5B 81.179 441 62 18 1 438 478333900 478333478 7.980000e-88 335.0
54 TraesCS5D01G005200 chr5B 76.232 690 98 37 1328 1962 6856993 6856315 6.250000e-79 305.0
55 TraesCS5D01G005200 chr5B 83.912 317 33 8 4221 4537 24392788 24393086 2.270000e-73 287.0
56 TraesCS5D01G005200 chr5B 79.245 318 38 20 4443 4757 30820552 30820260 3.930000e-46 196.0
57 TraesCS5D01G005200 chr5B 85.294 170 20 5 3087 3252 24627731 24627563 2.380000e-38 171.0
58 TraesCS5D01G005200 chr5B 88.112 143 15 2 4648 4790 24393150 24393290 8.560000e-38 169.0
59 TraesCS5D01G005200 chr5B 85.207 169 19 6 3087 3252 30922946 30922781 8.560000e-38 169.0
60 TraesCS5D01G005200 chr5B 84.795 171 19 7 3087 3252 6834843 6834675 1.110000e-36 165.0
61 TraesCS5D01G005200 chr5B 84.706 170 19 7 3087 3252 30997092 30996926 3.980000e-36 163.0
62 TraesCS5D01G005200 chr5B 88.073 109 10 3 2931 3038 48318242 48318136 5.230000e-25 126.0
63 TraesCS5D01G005200 chr3B 84.229 1395 166 36 1299 2659 62668977 62670351 0.000000e+00 1308.0
64 TraesCS5D01G005200 chr3B 83.596 317 35 9 4221 4537 62671881 62672180 1.050000e-71 281.0
65 TraesCS5D01G005200 chr3B 88.276 145 14 2 4648 4790 62672244 62672387 2.380000e-38 171.0
66 TraesCS5D01G005200 chr3A 79.624 319 54 9 1 313 265711833 265712146 8.380000e-53 219.0
67 TraesCS5D01G005200 chr6D 100.000 38 0 0 3052 3089 296865671 296865708 2.480000e-08 71.3
68 TraesCS5D01G005200 chr2B 95.349 43 2 0 3049 3091 690022579 690022537 8.930000e-08 69.4
69 TraesCS5D01G005200 chr1B 100.000 37 0 0 3052 3088 688695884 688695848 8.930000e-08 69.4
70 TraesCS5D01G005200 chr6A 85.075 67 7 3 3022 3088 176348690 176348627 1.160000e-06 65.8
71 TraesCS5D01G005200 chr3D 87.931 58 3 3 3049 3105 556165704 556165758 1.160000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G005200 chr5D 3926761 3931733 4972 True 9184.000000 9184 100.000000 1 4973 1 chr5D.!!$R1 4972
1 TraesCS5D01G005200 chr5D 5099080 5102514 3434 True 563.000000 1306 86.809000 1323 4790 3 chr5D.!!$R4 3467
2 TraesCS5D01G005200 chr5A 3770679 3772034 1355 False 1254.000000 1254 83.719000 1302 2653 1 chr5A.!!$F1 1351
3 TraesCS5D01G005200 chr5A 3979165 3980531 1366 True 1227.000000 1227 83.634000 3087 4409 1 chr5A.!!$R1 1322
4 TraesCS5D01G005200 chr5A 3725512 3728325 2813 False 1123.500000 1266 83.245500 1302 4434 2 chr5A.!!$F5 3132
5 TraesCS5D01G005200 chr5A 3799864 3801210 1346 False 1122.000000 1122 82.164000 3303 4633 1 chr5A.!!$F2 1330
6 TraesCS5D01G005200 chr5A 3758145 3760883 2738 False 1088.000000 1197 83.233000 1369 4434 2 chr5A.!!$F6 3065
7 TraesCS5D01G005200 chr5A 4607297 4614492 7195 False 995.528571 3539 94.121714 291 4973 7 chr5A.!!$F8 4682
8 TraesCS5D01G005200 chr5A 3712974 3715302 2328 False 760.500000 979 81.724500 1302 4434 2 chr5A.!!$F4 3132
9 TraesCS5D01G005200 chr5A 4053406 4056153 2747 False 646.200000 1447 88.422000 957 4790 5 chr5A.!!$F7 3833
10 TraesCS5D01G005200 chr4A 18647238 18651056 3818 False 1509.925000 3500 96.027250 793 4624 4 chr4A.!!$F4 3831
11 TraesCS5D01G005200 chr4A 18680507 18684869 4362 False 1251.300000 3511 93.036200 291 4624 5 chr4A.!!$F5 4333
12 TraesCS5D01G005200 chr4A 17801726 17805221 3495 False 713.500000 1221 82.582000 1586 4409 2 chr4A.!!$F3 2823
13 TraesCS5D01G005200 chr4A 17845279 17846379 1100 True 693.000000 693 79.074000 3219 4277 1 chr4A.!!$R1 1058
14 TraesCS5D01G005200 chr5B 6667561 6668934 1373 False 1293.000000 1293 84.165000 1301 2659 1 chr5B.!!$F1 1358
15 TraesCS5D01G005200 chr5B 30836277 30839727 3450 True 1171.333333 1602 87.407667 943 4407 3 chr5B.!!$R12 3464
16 TraesCS5D01G005200 chr5B 48419481 48420781 1300 False 1147.000000 1147 83.308000 3137 4409 1 chr5B.!!$F2 1272
17 TraesCS5D01G005200 chr5B 30940275 30941676 1401 True 1109.000000 1109 81.633000 1324 2687 1 chr5B.!!$R5 1363
18 TraesCS5D01G005200 chr5B 31016437 31017520 1083 True 852.000000 852 81.569000 1324 2373 1 chr5B.!!$R7 1049
19 TraesCS5D01G005200 chr5B 6852773 6856993 4220 True 730.000000 1155 80.737000 1328 4418 2 chr5B.!!$R10 3090
20 TraesCS5D01G005200 chr5B 24665927 24667199 1272 True 599.500000 785 86.065500 3237 4418 2 chr5B.!!$R11 1181
21 TraesCS5D01G005200 chr5B 24392788 24393290 502 False 228.000000 287 86.012000 4221 4790 2 chr5B.!!$F3 569
22 TraesCS5D01G005200 chr3B 62668977 62672387 3410 False 586.666667 1308 85.367000 1299 4790 3 chr3B.!!$F1 3491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
712 821 0.106708 TATCTGCTGCGGGATTGGAC 59.893 55.000 8.89 0.0 0.00 4.02 F
1226 1475 0.104855 TTGCGCTATCCTGTAGCCAG 59.895 55.000 9.73 0.0 37.26 4.85 F
1520 1785 3.167485 ACTACGTACCCTCCATGTTTCA 58.833 45.455 0.00 0.0 0.00 2.69 F
3170 4880 1.581447 CGTTGGGCCTTTCTGAAGC 59.419 57.895 4.53 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1520 1785 2.730672 GCTGCGCGACGAACAATCT 61.731 57.895 12.10 0.0 0.00 2.40 R
2420 3277 4.286808 TCAAATCTCTCAGGGTCATTGACA 59.713 41.667 18.09 0.0 33.68 3.58 R
3267 5063 1.211949 GCAAGGTATACAGGGGCAAGA 59.788 52.381 5.01 0.0 0.00 3.02 R
4803 7359 0.249073 CACATCCCCTCGTCTTAGCG 60.249 60.000 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.269241 CAACGCCTCCTTCCTCCC 59.731 66.667 0.00 0.00 0.00 4.30
18 19 2.122954 AACGCCTCCTTCCTCCCT 59.877 61.111 0.00 0.00 0.00 4.20
19 20 1.990614 AACGCCTCCTTCCTCCCTC 60.991 63.158 0.00 0.00 0.00 4.30
20 21 2.042435 CGCCTCCTTCCTCCCTCT 60.042 66.667 0.00 0.00 0.00 3.69
21 22 1.687493 CGCCTCCTTCCTCCCTCTT 60.687 63.158 0.00 0.00 0.00 2.85
22 23 1.268283 CGCCTCCTTCCTCCCTCTTT 61.268 60.000 0.00 0.00 0.00 2.52
23 24 0.544223 GCCTCCTTCCTCCCTCTTTC 59.456 60.000 0.00 0.00 0.00 2.62
24 25 1.958288 CCTCCTTCCTCCCTCTTTCA 58.042 55.000 0.00 0.00 0.00 2.69
25 26 2.269940 CCTCCTTCCTCCCTCTTTCAA 58.730 52.381 0.00 0.00 0.00 2.69
26 27 2.238395 CCTCCTTCCTCCCTCTTTCAAG 59.762 54.545 0.00 0.00 0.00 3.02
27 28 1.630878 TCCTTCCTCCCTCTTTCAAGC 59.369 52.381 0.00 0.00 0.00 4.01
28 29 1.352352 CCTTCCTCCCTCTTTCAAGCA 59.648 52.381 0.00 0.00 0.00 3.91
29 30 2.224867 CCTTCCTCCCTCTTTCAAGCAA 60.225 50.000 0.00 0.00 0.00 3.91
30 31 2.568623 TCCTCCCTCTTTCAAGCAAC 57.431 50.000 0.00 0.00 0.00 4.17
31 32 1.073923 TCCTCCCTCTTTCAAGCAACC 59.926 52.381 0.00 0.00 0.00 3.77
32 33 1.539157 CTCCCTCTTTCAAGCAACCC 58.461 55.000 0.00 0.00 0.00 4.11
33 34 0.112412 TCCCTCTTTCAAGCAACCCC 59.888 55.000 0.00 0.00 0.00 4.95
34 35 0.900182 CCCTCTTTCAAGCAACCCCC 60.900 60.000 0.00 0.00 0.00 5.40
35 36 0.178964 CCTCTTTCAAGCAACCCCCA 60.179 55.000 0.00 0.00 0.00 4.96
36 37 0.961753 CTCTTTCAAGCAACCCCCAC 59.038 55.000 0.00 0.00 0.00 4.61
37 38 0.469144 TCTTTCAAGCAACCCCCACC 60.469 55.000 0.00 0.00 0.00 4.61
38 39 0.469892 CTTTCAAGCAACCCCCACCT 60.470 55.000 0.00 0.00 0.00 4.00
39 40 0.469144 TTTCAAGCAACCCCCACCTC 60.469 55.000 0.00 0.00 0.00 3.85
40 41 1.360393 TTCAAGCAACCCCCACCTCT 61.360 55.000 0.00 0.00 0.00 3.69
41 42 1.604593 CAAGCAACCCCCACCTCTG 60.605 63.158 0.00 0.00 0.00 3.35
42 43 2.845345 AAGCAACCCCCACCTCTGG 61.845 63.158 0.00 0.00 37.29 3.86
50 51 2.281761 CCACCTCTGGGCACACAC 60.282 66.667 0.00 0.00 33.23 3.82
51 52 2.666190 CACCTCTGGGCACACACG 60.666 66.667 0.00 0.00 35.63 4.49
52 53 2.842462 ACCTCTGGGCACACACGA 60.842 61.111 0.00 0.00 35.63 4.35
53 54 2.047844 CCTCTGGGCACACACGAG 60.048 66.667 0.00 0.00 0.00 4.18
54 55 2.740055 CTCTGGGCACACACGAGC 60.740 66.667 0.00 0.00 0.00 5.03
55 56 3.231889 CTCTGGGCACACACGAGCT 62.232 63.158 0.00 0.00 0.00 4.09
56 57 3.046087 CTGGGCACACACGAGCTG 61.046 66.667 0.00 0.00 0.00 4.24
59 60 3.279116 GGCACACACGAGCTGCAA 61.279 61.111 1.02 0.00 32.20 4.08
60 61 2.620112 GGCACACACGAGCTGCAAT 61.620 57.895 1.02 0.00 32.20 3.56
61 62 1.441515 GCACACACGAGCTGCAATG 60.442 57.895 1.02 0.00 0.00 2.82
62 63 1.441515 CACACACGAGCTGCAATGC 60.442 57.895 1.02 0.00 0.00 3.56
63 64 2.202260 CACACGAGCTGCAATGCG 60.202 61.111 1.02 2.51 38.13 4.73
64 65 4.093952 ACACGAGCTGCAATGCGC 62.094 61.111 12.63 12.63 42.89 6.09
65 66 4.824166 CACGAGCTGCAATGCGCC 62.824 66.667 15.84 3.01 41.33 6.53
68 69 4.189188 GAGCTGCAATGCGCCCAG 62.189 66.667 15.84 7.52 41.33 4.45
69 70 4.728110 AGCTGCAATGCGCCCAGA 62.728 61.111 15.84 0.00 41.33 3.86
70 71 4.189188 GCTGCAATGCGCCCAGAG 62.189 66.667 4.18 0.00 41.33 3.35
71 72 4.189188 CTGCAATGCGCCCAGAGC 62.189 66.667 4.18 2.35 41.33 4.09
88 89 2.451693 GCGAATGCTGTAACGGTGA 58.548 52.632 0.00 0.00 38.39 4.02
89 90 1.006832 GCGAATGCTGTAACGGTGAT 58.993 50.000 0.00 0.00 38.39 3.06
90 91 1.267532 GCGAATGCTGTAACGGTGATG 60.268 52.381 0.00 0.00 38.39 3.07
91 92 1.327460 CGAATGCTGTAACGGTGATGG 59.673 52.381 0.00 0.00 0.00 3.51
92 93 2.627945 GAATGCTGTAACGGTGATGGA 58.372 47.619 0.00 0.00 0.00 3.41
93 94 2.024176 ATGCTGTAACGGTGATGGAC 57.976 50.000 0.00 0.00 0.00 4.02
94 95 0.389296 TGCTGTAACGGTGATGGACG 60.389 55.000 0.00 0.00 0.00 4.79
95 96 1.082117 GCTGTAACGGTGATGGACGG 61.082 60.000 0.00 0.00 0.00 4.79
96 97 0.459585 CTGTAACGGTGATGGACGGG 60.460 60.000 0.00 0.00 0.00 5.28
97 98 0.899253 TGTAACGGTGATGGACGGGA 60.899 55.000 0.00 0.00 0.00 5.14
98 99 0.179119 GTAACGGTGATGGACGGGAG 60.179 60.000 0.00 0.00 0.00 4.30
99 100 1.952102 TAACGGTGATGGACGGGAGC 61.952 60.000 0.00 0.00 0.00 4.70
100 101 3.770040 CGGTGATGGACGGGAGCA 61.770 66.667 0.00 0.00 0.00 4.26
101 102 2.187946 GGTGATGGACGGGAGCAG 59.812 66.667 0.00 0.00 0.00 4.24
102 103 2.512515 GTGATGGACGGGAGCAGC 60.513 66.667 0.00 0.00 0.00 5.25
103 104 4.147449 TGATGGACGGGAGCAGCG 62.147 66.667 0.00 0.00 0.00 5.18
104 105 3.838271 GATGGACGGGAGCAGCGA 61.838 66.667 0.00 0.00 0.00 4.93
105 106 4.148825 ATGGACGGGAGCAGCGAC 62.149 66.667 0.00 0.00 0.00 5.19
108 109 4.373116 GACGGGAGCAGCGACCAA 62.373 66.667 12.49 0.00 0.00 3.67
109 110 4.681978 ACGGGAGCAGCGACCAAC 62.682 66.667 12.49 0.00 0.00 3.77
119 120 3.118454 CGACCAACGGCGAGCATT 61.118 61.111 16.62 0.00 38.46 3.56
120 121 2.480555 GACCAACGGCGAGCATTG 59.519 61.111 16.62 7.53 0.00 2.82
121 122 3.039202 GACCAACGGCGAGCATTGG 62.039 63.158 21.16 21.16 46.95 3.16
122 123 4.481112 CCAACGGCGAGCATTGGC 62.481 66.667 16.62 0.00 42.66 4.52
123 124 4.481112 CAACGGCGAGCATTGGCC 62.481 66.667 16.62 0.00 43.29 5.36
124 125 4.722700 AACGGCGAGCATTGGCCT 62.723 61.111 16.62 0.00 45.22 5.19
129 130 3.869272 CGAGCATTGGCCTGCGAC 61.869 66.667 11.03 8.72 46.86 5.19
130 131 2.747460 GAGCATTGGCCTGCGACA 60.747 61.111 11.03 0.00 46.86 4.35
131 132 2.749044 AGCATTGGCCTGCGACAG 60.749 61.111 11.03 0.00 46.86 3.51
132 133 2.747460 GCATTGGCCTGCGACAGA 60.747 61.111 3.32 0.00 32.44 3.41
133 134 2.758089 GCATTGGCCTGCGACAGAG 61.758 63.158 3.32 1.16 32.44 3.35
134 135 2.110967 CATTGGCCTGCGACAGAGG 61.111 63.158 3.32 0.00 32.44 3.69
139 140 3.494378 CCTGCGACAGAGGCAATG 58.506 61.111 8.20 0.00 40.39 2.82
140 141 2.758089 CCTGCGACAGAGGCAATGC 61.758 63.158 0.00 0.00 40.39 3.56
141 142 1.744368 CTGCGACAGAGGCAATGCT 60.744 57.895 4.82 0.00 40.39 3.79
142 143 0.460811 CTGCGACAGAGGCAATGCTA 60.461 55.000 4.82 0.00 40.39 3.49
143 144 0.460811 TGCGACAGAGGCAATGCTAG 60.461 55.000 4.82 0.00 37.49 3.42
144 145 0.179100 GCGACAGAGGCAATGCTAGA 60.179 55.000 4.82 0.00 0.00 2.43
145 146 1.740380 GCGACAGAGGCAATGCTAGAA 60.740 52.381 4.82 0.00 0.00 2.10
146 147 1.929836 CGACAGAGGCAATGCTAGAAC 59.070 52.381 4.82 0.00 0.00 3.01
147 148 2.284190 GACAGAGGCAATGCTAGAACC 58.716 52.381 4.82 0.00 0.00 3.62
148 149 1.293924 CAGAGGCAATGCTAGAACCG 58.706 55.000 4.82 0.00 0.00 4.44
149 150 0.462759 AGAGGCAATGCTAGAACCGC 60.463 55.000 4.82 0.00 0.00 5.68
150 151 0.462759 GAGGCAATGCTAGAACCGCT 60.463 55.000 4.82 0.00 0.00 5.52
151 152 0.745845 AGGCAATGCTAGAACCGCTG 60.746 55.000 4.82 0.00 0.00 5.18
152 153 1.026718 GGCAATGCTAGAACCGCTGT 61.027 55.000 4.82 0.00 0.00 4.40
153 154 0.804989 GCAATGCTAGAACCGCTGTT 59.195 50.000 0.00 0.00 37.42 3.16
154 155 1.466360 GCAATGCTAGAACCGCTGTTG 60.466 52.381 0.00 0.00 33.97 3.33
155 156 2.076100 CAATGCTAGAACCGCTGTTGA 58.924 47.619 0.00 0.00 33.97 3.18
156 157 1.726853 ATGCTAGAACCGCTGTTGAC 58.273 50.000 0.00 0.00 33.97 3.18
157 158 0.320421 TGCTAGAACCGCTGTTGACC 60.320 55.000 0.00 0.00 33.97 4.02
158 159 1.019805 GCTAGAACCGCTGTTGACCC 61.020 60.000 0.00 0.00 33.97 4.46
159 160 0.391263 CTAGAACCGCTGTTGACCCC 60.391 60.000 0.00 0.00 33.97 4.95
160 161 1.833787 TAGAACCGCTGTTGACCCCC 61.834 60.000 0.00 0.00 33.97 5.40
161 162 4.636435 AACCGCTGTTGACCCCCG 62.636 66.667 0.00 0.00 32.13 5.73
164 165 4.308458 CGCTGTTGACCCCCGTGA 62.308 66.667 0.00 0.00 0.00 4.35
165 166 2.351276 GCTGTTGACCCCCGTGAT 59.649 61.111 0.00 0.00 0.00 3.06
166 167 2.040544 GCTGTTGACCCCCGTGATG 61.041 63.158 0.00 0.00 0.00 3.07
167 168 2.033448 TGTTGACCCCCGTGATGC 59.967 61.111 0.00 0.00 0.00 3.91
168 169 2.033448 GTTGACCCCCGTGATGCA 59.967 61.111 0.00 0.00 0.00 3.96
169 170 1.602323 GTTGACCCCCGTGATGCAA 60.602 57.895 0.00 0.00 0.00 4.08
170 171 1.602323 TTGACCCCCGTGATGCAAC 60.602 57.895 0.00 0.00 0.00 4.17
171 172 2.750237 GACCCCCGTGATGCAACC 60.750 66.667 0.00 0.00 0.00 3.77
172 173 4.715523 ACCCCCGTGATGCAACCG 62.716 66.667 0.00 0.00 0.00 4.44
174 175 4.715523 CCCCGTGATGCAACCGGT 62.716 66.667 17.87 0.00 40.10 5.28
175 176 3.430862 CCCGTGATGCAACCGGTG 61.431 66.667 8.52 3.35 40.10 4.94
176 177 2.358125 CCGTGATGCAACCGGTGA 60.358 61.111 8.52 0.00 37.00 4.02
177 178 2.677003 CCGTGATGCAACCGGTGAC 61.677 63.158 8.52 3.46 37.00 3.67
178 179 1.958715 CGTGATGCAACCGGTGACA 60.959 57.895 8.52 10.58 0.00 3.58
179 180 1.502990 CGTGATGCAACCGGTGACAA 61.503 55.000 8.52 0.00 0.00 3.18
180 181 0.238289 GTGATGCAACCGGTGACAAG 59.762 55.000 8.52 0.00 0.00 3.16
181 182 0.107643 TGATGCAACCGGTGACAAGA 59.892 50.000 8.52 0.00 0.00 3.02
182 183 1.271325 TGATGCAACCGGTGACAAGAT 60.271 47.619 8.52 0.00 0.00 2.40
183 184 2.027653 TGATGCAACCGGTGACAAGATA 60.028 45.455 8.52 0.00 0.00 1.98
184 185 2.093306 TGCAACCGGTGACAAGATAG 57.907 50.000 8.52 0.00 0.00 2.08
185 186 0.727398 GCAACCGGTGACAAGATAGC 59.273 55.000 8.52 0.00 0.00 2.97
186 187 1.676014 GCAACCGGTGACAAGATAGCT 60.676 52.381 8.52 0.00 0.00 3.32
187 188 2.699954 CAACCGGTGACAAGATAGCTT 58.300 47.619 8.52 0.00 33.74 3.74
188 189 2.673368 CAACCGGTGACAAGATAGCTTC 59.327 50.000 8.52 0.00 30.14 3.86
189 190 1.899814 ACCGGTGACAAGATAGCTTCA 59.100 47.619 6.12 0.00 30.14 3.02
190 191 2.301870 ACCGGTGACAAGATAGCTTCAA 59.698 45.455 6.12 0.00 30.14 2.69
191 192 2.673368 CCGGTGACAAGATAGCTTCAAC 59.327 50.000 0.00 0.00 30.14 3.18
192 193 2.673368 CGGTGACAAGATAGCTTCAACC 59.327 50.000 0.00 0.00 30.14 3.77
193 194 3.617531 CGGTGACAAGATAGCTTCAACCT 60.618 47.826 11.96 0.00 30.84 3.50
194 195 3.935828 GGTGACAAGATAGCTTCAACCTC 59.064 47.826 0.00 0.00 30.59 3.85
195 196 4.323104 GGTGACAAGATAGCTTCAACCTCT 60.323 45.833 0.00 0.00 30.59 3.69
196 197 5.105310 GGTGACAAGATAGCTTCAACCTCTA 60.105 44.000 0.00 0.00 30.59 2.43
197 198 6.039616 GTGACAAGATAGCTTCAACCTCTAG 58.960 44.000 0.00 0.00 30.14 2.43
198 199 5.952347 TGACAAGATAGCTTCAACCTCTAGA 59.048 40.000 0.00 0.00 30.14 2.43
199 200 6.609212 TGACAAGATAGCTTCAACCTCTAGAT 59.391 38.462 0.00 0.00 30.14 1.98
200 201 6.815089 ACAAGATAGCTTCAACCTCTAGATG 58.185 40.000 0.00 0.00 30.14 2.90
201 202 6.609212 ACAAGATAGCTTCAACCTCTAGATGA 59.391 38.462 1.64 0.00 30.14 2.92
202 203 7.124901 ACAAGATAGCTTCAACCTCTAGATGAA 59.875 37.037 6.99 6.99 30.14 2.57
203 204 7.667575 AGATAGCTTCAACCTCTAGATGAAA 57.332 36.000 8.27 0.00 33.08 2.69
204 205 8.083828 AGATAGCTTCAACCTCTAGATGAAAA 57.916 34.615 8.27 0.00 33.08 2.29
205 206 8.543774 AGATAGCTTCAACCTCTAGATGAAAAA 58.456 33.333 8.27 0.00 33.08 1.94
206 207 8.729805 ATAGCTTCAACCTCTAGATGAAAAAG 57.270 34.615 8.27 4.90 33.08 2.27
207 208 5.414144 AGCTTCAACCTCTAGATGAAAAAGC 59.586 40.000 15.87 15.87 33.08 3.51
208 209 5.414144 GCTTCAACCTCTAGATGAAAAAGCT 59.586 40.000 16.16 0.00 33.08 3.74
209 210 6.072230 GCTTCAACCTCTAGATGAAAAAGCTT 60.072 38.462 16.16 0.00 33.08 3.74
210 211 7.440523 TTCAACCTCTAGATGAAAAAGCTTC 57.559 36.000 0.00 0.00 30.60 3.86
211 212 6.533730 TCAACCTCTAGATGAAAAAGCTTCA 58.466 36.000 0.00 0.00 0.00 3.02
212 213 6.998074 TCAACCTCTAGATGAAAAAGCTTCAA 59.002 34.615 0.00 0.00 31.55 2.69
213 214 7.667219 TCAACCTCTAGATGAAAAAGCTTCAAT 59.333 33.333 0.00 0.00 31.55 2.57
214 215 7.622893 ACCTCTAGATGAAAAAGCTTCAATC 57.377 36.000 0.00 1.05 31.55 2.67
215 216 6.314896 ACCTCTAGATGAAAAAGCTTCAATCG 59.685 38.462 0.00 0.00 31.55 3.34
216 217 6.238320 CCTCTAGATGAAAAAGCTTCAATCGG 60.238 42.308 0.00 1.06 31.55 4.18
217 218 4.102035 AGATGAAAAAGCTTCAATCGGC 57.898 40.909 0.00 0.00 31.55 5.54
218 219 3.760684 AGATGAAAAAGCTTCAATCGGCT 59.239 39.130 0.00 0.00 40.85 5.52
219 220 4.943705 AGATGAAAAAGCTTCAATCGGCTA 59.056 37.500 0.00 0.00 37.87 3.93
220 221 5.591877 AGATGAAAAAGCTTCAATCGGCTAT 59.408 36.000 0.00 0.00 37.87 2.97
221 222 6.767902 AGATGAAAAAGCTTCAATCGGCTATA 59.232 34.615 0.00 0.00 37.87 1.31
222 223 6.363577 TGAAAAAGCTTCAATCGGCTATAG 57.636 37.500 0.00 0.00 37.87 1.31
223 224 6.112734 TGAAAAAGCTTCAATCGGCTATAGA 58.887 36.000 3.21 0.00 37.87 1.98
224 225 6.258727 TGAAAAAGCTTCAATCGGCTATAGAG 59.741 38.462 3.21 0.00 37.87 2.43
225 226 5.537300 AAAGCTTCAATCGGCTATAGAGA 57.463 39.130 3.21 2.26 37.87 3.10
226 227 5.537300 AAGCTTCAATCGGCTATAGAGAA 57.463 39.130 3.21 0.00 37.87 2.87
227 228 5.537300 AGCTTCAATCGGCTATAGAGAAA 57.463 39.130 3.21 0.00 37.00 2.52
228 229 5.537188 AGCTTCAATCGGCTATAGAGAAAG 58.463 41.667 3.21 4.50 37.00 2.62
229 230 4.151512 GCTTCAATCGGCTATAGAGAAAGC 59.848 45.833 3.21 10.00 38.03 3.51
230 231 5.537188 CTTCAATCGGCTATAGAGAAAGCT 58.463 41.667 3.21 0.00 38.80 3.74
231 232 5.537300 TCAATCGGCTATAGAGAAAGCTT 57.463 39.130 3.21 0.00 38.80 3.74
232 233 5.918608 TCAATCGGCTATAGAGAAAGCTTT 58.081 37.500 12.53 12.53 38.80 3.51
233 234 7.050970 TCAATCGGCTATAGAGAAAGCTTTA 57.949 36.000 12.68 0.00 38.80 1.85
234 235 7.497595 TCAATCGGCTATAGAGAAAGCTTTAA 58.502 34.615 12.68 0.00 38.80 1.52
235 236 7.438459 TCAATCGGCTATAGAGAAAGCTTTAAC 59.562 37.037 12.68 9.19 38.80 2.01
236 237 5.598769 TCGGCTATAGAGAAAGCTTTAACC 58.401 41.667 12.68 4.32 38.80 2.85
237 238 4.444720 CGGCTATAGAGAAAGCTTTAACCG 59.555 45.833 12.68 8.19 38.80 4.44
238 239 4.750598 GGCTATAGAGAAAGCTTTAACCGG 59.249 45.833 12.68 0.00 38.80 5.28
239 240 4.211584 GCTATAGAGAAAGCTTTAACCGGC 59.788 45.833 12.68 7.38 35.80 6.13
240 241 2.561478 AGAGAAAGCTTTAACCGGCA 57.439 45.000 12.68 0.00 0.00 5.69
241 242 2.152016 AGAGAAAGCTTTAACCGGCAC 58.848 47.619 12.68 0.00 0.00 5.01
242 243 2.152016 GAGAAAGCTTTAACCGGCACT 58.848 47.619 12.68 1.80 0.00 4.40
243 244 1.880027 AGAAAGCTTTAACCGGCACTG 59.120 47.619 12.68 0.00 0.00 3.66
244 245 0.313987 AAAGCTTTAACCGGCACTGC 59.686 50.000 10.72 0.00 0.00 4.40
245 246 1.524008 AAGCTTTAACCGGCACTGCC 61.524 55.000 10.35 10.35 46.75 4.85
262 263 3.965780 CCAATCGGGGCAAATAAGC 57.034 52.632 0.00 0.00 0.00 3.09
263 264 1.402787 CCAATCGGGGCAAATAAGCT 58.597 50.000 0.00 0.00 34.17 3.74
264 265 2.582052 CCAATCGGGGCAAATAAGCTA 58.418 47.619 0.00 0.00 34.17 3.32
265 266 2.293399 CCAATCGGGGCAAATAAGCTAC 59.707 50.000 0.00 0.00 34.17 3.58
266 267 2.948979 CAATCGGGGCAAATAAGCTACA 59.051 45.455 0.00 0.00 34.17 2.74
267 268 2.791347 TCGGGGCAAATAAGCTACAA 57.209 45.000 0.00 0.00 34.17 2.41
268 269 2.361789 TCGGGGCAAATAAGCTACAAC 58.638 47.619 0.00 0.00 34.17 3.32
269 270 1.404035 CGGGGCAAATAAGCTACAACC 59.596 52.381 0.00 0.00 34.17 3.77
270 271 1.404035 GGGGCAAATAAGCTACAACCG 59.596 52.381 0.00 0.00 34.17 4.44
271 272 2.089201 GGGCAAATAAGCTACAACCGT 58.911 47.619 0.00 0.00 34.17 4.83
272 273 2.490509 GGGCAAATAAGCTACAACCGTT 59.509 45.455 0.00 0.00 34.17 4.44
273 274 3.498082 GGCAAATAAGCTACAACCGTTG 58.502 45.455 9.80 9.80 34.17 4.10
274 275 3.189702 GGCAAATAAGCTACAACCGTTGA 59.810 43.478 18.19 1.25 34.17 3.18
275 276 4.156182 GCAAATAAGCTACAACCGTTGAC 58.844 43.478 18.19 6.89 0.00 3.18
276 277 4.319911 GCAAATAAGCTACAACCGTTGACA 60.320 41.667 18.19 4.45 0.00 3.58
277 278 5.144359 CAAATAAGCTACAACCGTTGACAC 58.856 41.667 18.19 6.22 0.00 3.67
278 279 2.319136 AAGCTACAACCGTTGACACA 57.681 45.000 18.19 0.00 0.00 3.72
279 280 1.865865 AGCTACAACCGTTGACACAG 58.134 50.000 18.19 9.64 0.00 3.66
280 281 1.411246 AGCTACAACCGTTGACACAGA 59.589 47.619 18.19 0.00 0.00 3.41
281 282 2.159014 AGCTACAACCGTTGACACAGAA 60.159 45.455 18.19 0.00 0.00 3.02
282 283 2.806244 GCTACAACCGTTGACACAGAAT 59.194 45.455 18.19 0.00 0.00 2.40
283 284 3.363970 GCTACAACCGTTGACACAGAATG 60.364 47.826 18.19 0.00 46.00 2.67
284 285 1.946768 ACAACCGTTGACACAGAATGG 59.053 47.619 18.19 0.00 43.62 3.16
285 286 1.946768 CAACCGTTGACACAGAATGGT 59.053 47.619 5.23 0.00 43.30 3.55
286 287 1.878953 ACCGTTGACACAGAATGGTC 58.121 50.000 0.00 0.00 43.62 4.02
287 288 1.156736 CCGTTGACACAGAATGGTCC 58.843 55.000 0.00 0.00 43.62 4.46
288 289 1.542328 CCGTTGACACAGAATGGTCCA 60.542 52.381 0.00 0.00 43.62 4.02
289 290 2.217750 CGTTGACACAGAATGGTCCAA 58.782 47.619 0.00 0.00 43.62 3.53
319 320 5.991328 TGAAACAAGCTTCAACTAGACAG 57.009 39.130 0.00 0.00 32.39 3.51
358 360 0.772341 GCGCTGCTCAAACGAAAAAG 59.228 50.000 0.00 0.00 0.00 2.27
362 364 3.179048 GCTGCTCAAACGAAAAAGTTGT 58.821 40.909 0.00 0.00 34.14 3.32
374 376 6.262601 ACGAAAAAGTTGTAACCATTGACAG 58.737 36.000 0.00 0.00 0.00 3.51
380 382 5.831997 AGTTGTAACCATTGACAGAAAAGC 58.168 37.500 0.00 0.00 0.00 3.51
384 386 3.904136 ACCATTGACAGAAAAGCTTCG 57.096 42.857 0.00 0.00 36.61 3.79
387 389 3.499918 CCATTGACAGAAAAGCTTCGACT 59.500 43.478 0.00 0.00 36.61 4.18
388 390 4.461405 CATTGACAGAAAAGCTTCGACTG 58.539 43.478 19.00 19.00 36.61 3.51
399 401 7.606456 AGAAAAGCTTCGACTGTATATGGAAAA 59.394 33.333 0.00 0.00 36.61 2.29
405 411 5.041287 TCGACTGTATATGGAAAAAGCTCG 58.959 41.667 0.00 0.00 0.00 5.03
412 418 0.887387 TGGAAAAAGCTCGAACCGGG 60.887 55.000 6.32 0.00 0.00 5.73
420 426 1.677637 GCTCGAACCGGGGAGAGAAT 61.678 60.000 21.32 0.00 32.84 2.40
427 433 4.586884 GAACCGGGGAGAGAATAAGTTTT 58.413 43.478 6.32 0.00 0.00 2.43
430 436 5.494724 ACCGGGGAGAGAATAAGTTTTAAC 58.505 41.667 6.32 0.00 0.00 2.01
437 443 7.119407 GGGAGAGAATAAGTTTTAACCAGACAC 59.881 40.741 0.00 0.00 0.00 3.67
440 446 6.293698 AGAATAAGTTTTAACCAGACACGGT 58.706 36.000 0.00 0.00 42.71 4.83
444 477 1.301423 TTTAACCAGACACGGTGCAC 58.699 50.000 8.80 8.80 39.95 4.57
461 494 2.360801 TGCACCTAGAAAAGTTGCAACC 59.639 45.455 25.62 10.58 0.00 3.77
463 496 2.616842 CACCTAGAAAAGTTGCAACCGT 59.383 45.455 25.62 11.71 0.00 4.83
467 500 2.218603 AGAAAAGTTGCAACCGTCGAT 58.781 42.857 25.62 3.24 0.00 3.59
469 502 3.432252 AGAAAAGTTGCAACCGTCGATAG 59.568 43.478 25.62 0.00 0.00 2.08
525 634 0.937304 TCAGTGACACGAAAAGCTGC 59.063 50.000 0.00 0.00 0.00 5.25
538 647 1.055040 AAGCTGCAACCAGAGAGTCT 58.945 50.000 1.02 0.00 41.77 3.24
588 697 4.003788 CTGCGACGGTGGGGAGTT 62.004 66.667 0.00 0.00 0.00 3.01
589 698 4.308458 TGCGACGGTGGGGAGTTG 62.308 66.667 0.00 0.00 0.00 3.16
591 700 4.308458 CGACGGTGGGGAGTTGCA 62.308 66.667 0.00 0.00 0.00 4.08
592 701 2.668550 GACGGTGGGGAGTTGCAC 60.669 66.667 0.00 0.00 0.00 4.57
593 702 4.265056 ACGGTGGGGAGTTGCACC 62.265 66.667 0.00 0.00 42.04 5.01
598 707 4.329545 GGGGAGTTGCACCAGCGA 62.330 66.667 0.00 0.00 46.23 4.93
616 725 4.680237 CGGTGGTGGAGCTGCGAA 62.680 66.667 0.00 0.00 0.00 4.70
617 726 2.743928 GGTGGTGGAGCTGCGAAG 60.744 66.667 0.00 0.00 0.00 3.79
618 727 2.743928 GTGGTGGAGCTGCGAAGG 60.744 66.667 0.00 0.00 0.00 3.46
619 728 2.922503 TGGTGGAGCTGCGAAGGA 60.923 61.111 0.00 0.00 0.00 3.36
633 742 4.341783 AGGAGTGCCCTGTGCTGC 62.342 66.667 0.00 0.00 45.61 5.25
634 743 4.648626 GGAGTGCCCTGTGCTGCA 62.649 66.667 0.00 0.00 42.00 4.41
635 744 2.595463 GAGTGCCCTGTGCTGCAA 60.595 61.111 2.77 0.00 39.57 4.08
636 745 2.123769 AGTGCCCTGTGCTGCAAA 60.124 55.556 2.77 0.00 39.57 3.68
637 746 2.028043 GTGCCCTGTGCTGCAAAC 59.972 61.111 2.77 0.00 39.57 2.93
638 747 3.225798 TGCCCTGTGCTGCAAACC 61.226 61.111 2.77 0.00 42.00 3.27
639 748 3.225798 GCCCTGTGCTGCAAACCA 61.226 61.111 2.77 0.00 36.87 3.67
640 749 2.730094 CCCTGTGCTGCAAACCAC 59.270 61.111 2.77 5.20 0.00 4.16
641 750 2.332514 CCTGTGCTGCAAACCACG 59.667 61.111 2.77 0.00 34.77 4.94
642 751 2.186160 CCTGTGCTGCAAACCACGA 61.186 57.895 2.77 0.00 34.77 4.35
643 752 1.280746 CTGTGCTGCAAACCACGAG 59.719 57.895 2.77 0.00 34.77 4.18
644 753 2.050985 GTGCTGCAAACCACGAGC 60.051 61.111 2.77 0.00 0.00 5.03
645 754 2.203195 TGCTGCAAACCACGAGCT 60.203 55.556 0.00 0.00 32.41 4.09
646 755 2.253452 GCTGCAAACCACGAGCTG 59.747 61.111 0.00 0.00 0.00 4.24
647 756 2.546494 GCTGCAAACCACGAGCTGT 61.546 57.895 0.00 0.00 0.00 4.40
655 764 2.047844 CACGAGCTGTGGGTGGAG 60.048 66.667 0.00 0.00 45.21 3.86
656 765 4.008933 ACGAGCTGTGGGTGGAGC 62.009 66.667 0.00 0.00 35.28 4.70
658 767 2.351244 CGAGCTGTGGGTGGAGCTA 61.351 63.158 0.00 0.00 45.72 3.32
659 768 1.219393 GAGCTGTGGGTGGAGCTAC 59.781 63.158 0.00 0.00 45.72 3.58
660 769 1.536418 AGCTGTGGGTGGAGCTACA 60.536 57.895 0.00 0.00 43.88 2.74
661 770 1.127567 AGCTGTGGGTGGAGCTACAA 61.128 55.000 0.00 0.00 43.88 2.41
662 771 0.955919 GCTGTGGGTGGAGCTACAAC 60.956 60.000 4.99 4.99 32.12 3.32
663 772 0.670546 CTGTGGGTGGAGCTACAACG 60.671 60.000 8.18 0.00 0.00 4.10
664 773 2.033194 GTGGGTGGAGCTACAACGC 61.033 63.158 8.18 8.15 0.00 4.84
665 774 2.214216 TGGGTGGAGCTACAACGCT 61.214 57.895 8.18 0.00 44.33 5.07
666 775 1.741770 GGGTGGAGCTACAACGCTG 60.742 63.158 8.18 0.00 41.08 5.18
667 776 1.741770 GGTGGAGCTACAACGCTGG 60.742 63.158 0.00 0.00 41.08 4.85
668 777 2.047274 TGGAGCTACAACGCTGGC 60.047 61.111 0.00 0.00 41.08 4.85
669 778 3.188786 GGAGCTACAACGCTGGCG 61.189 66.667 13.56 13.56 41.08 5.69
670 779 3.854459 GAGCTACAACGCTGGCGC 61.854 66.667 15.04 0.00 41.08 6.53
692 801 2.870372 GTGGAGCACGGCAATGAC 59.130 61.111 0.00 0.00 0.00 3.06
693 802 1.672356 GTGGAGCACGGCAATGACT 60.672 57.895 0.00 0.00 0.00 3.41
694 803 0.391130 GTGGAGCACGGCAATGACTA 60.391 55.000 0.00 0.00 0.00 2.59
695 804 0.541392 TGGAGCACGGCAATGACTAT 59.459 50.000 0.00 0.00 0.00 2.12
696 805 1.221414 GGAGCACGGCAATGACTATC 58.779 55.000 0.00 0.00 0.00 2.08
697 806 1.202580 GGAGCACGGCAATGACTATCT 60.203 52.381 0.00 0.00 0.00 1.98
698 807 1.863454 GAGCACGGCAATGACTATCTG 59.137 52.381 0.00 0.00 0.00 2.90
699 808 0.305922 GCACGGCAATGACTATCTGC 59.694 55.000 0.00 0.00 35.28 4.26
700 809 1.945387 CACGGCAATGACTATCTGCT 58.055 50.000 0.00 0.00 36.32 4.24
701 810 1.596260 CACGGCAATGACTATCTGCTG 59.404 52.381 0.68 0.68 45.94 4.41
702 811 0.585357 CGGCAATGACTATCTGCTGC 59.415 55.000 0.00 0.00 35.79 5.25
703 812 0.585357 GGCAATGACTATCTGCTGCG 59.415 55.000 0.00 0.00 36.32 5.18
704 813 0.585357 GCAATGACTATCTGCTGCGG 59.415 55.000 0.95 0.95 33.20 5.69
705 814 1.224075 CAATGACTATCTGCTGCGGG 58.776 55.000 8.89 0.00 0.00 6.13
706 815 1.123077 AATGACTATCTGCTGCGGGA 58.877 50.000 8.89 3.02 0.00 5.14
707 816 1.346062 ATGACTATCTGCTGCGGGAT 58.654 50.000 8.89 10.45 0.00 3.85
708 817 1.123077 TGACTATCTGCTGCGGGATT 58.877 50.000 8.89 0.00 0.00 3.01
709 818 1.202568 TGACTATCTGCTGCGGGATTG 60.203 52.381 8.89 11.05 0.00 2.67
710 819 0.107456 ACTATCTGCTGCGGGATTGG 59.893 55.000 8.89 7.36 0.00 3.16
711 820 0.394192 CTATCTGCTGCGGGATTGGA 59.606 55.000 8.89 0.00 0.00 3.53
712 821 0.106708 TATCTGCTGCGGGATTGGAC 59.893 55.000 8.89 0.00 0.00 4.02
713 822 2.930385 ATCTGCTGCGGGATTGGACG 62.930 60.000 8.89 0.00 0.00 4.79
718 827 3.259751 GCGGGATTGGACGCGTAC 61.260 66.667 16.44 16.44 46.58 3.67
719 828 2.493030 CGGGATTGGACGCGTACT 59.507 61.111 24.23 2.07 40.39 2.73
720 829 1.588139 CGGGATTGGACGCGTACTC 60.588 63.158 24.23 12.81 40.39 2.59
721 830 1.814527 GGGATTGGACGCGTACTCT 59.185 57.895 24.23 9.74 0.00 3.24
722 831 0.248949 GGGATTGGACGCGTACTCTC 60.249 60.000 24.23 17.99 0.00 3.20
731 840 2.532256 GCGTACTCTCGAGCGGCTA 61.532 63.158 7.81 0.00 0.00 3.93
737 846 1.227883 TCTCGAGCGGCTAGTAGGG 60.228 63.158 7.81 0.00 0.00 3.53
784 1013 3.134127 GCCTACCAGCCGCCAAAG 61.134 66.667 0.00 0.00 0.00 2.77
785 1014 2.668632 CCTACCAGCCGCCAAAGA 59.331 61.111 0.00 0.00 0.00 2.52
786 1015 1.002624 CCTACCAGCCGCCAAAGAA 60.003 57.895 0.00 0.00 0.00 2.52
787 1016 0.608035 CCTACCAGCCGCCAAAGAAA 60.608 55.000 0.00 0.00 0.00 2.52
788 1017 1.243902 CTACCAGCCGCCAAAGAAAA 58.756 50.000 0.00 0.00 0.00 2.29
789 1018 1.200020 CTACCAGCCGCCAAAGAAAAG 59.800 52.381 0.00 0.00 0.00 2.27
790 1019 1.290009 CCAGCCGCCAAAGAAAAGG 59.710 57.895 0.00 0.00 0.00 3.11
825 1054 0.517316 GACCGTCAATCTGCCAACAC 59.483 55.000 0.00 0.00 0.00 3.32
832 1061 0.108585 AATCTGCCAACACACCGACT 59.891 50.000 0.00 0.00 0.00 4.18
833 1062 0.603707 ATCTGCCAACACACCGACTG 60.604 55.000 0.00 0.00 0.00 3.51
834 1063 2.896801 CTGCCAACACACCGACTGC 61.897 63.158 0.00 0.00 0.00 4.40
835 1064 2.899838 GCCAACACACCGACTGCA 60.900 61.111 0.00 0.00 0.00 4.41
836 1065 2.477176 GCCAACACACCGACTGCAA 61.477 57.895 0.00 0.00 0.00 4.08
837 1066 1.648720 CCAACACACCGACTGCAAG 59.351 57.895 0.00 0.00 42.29 4.01
838 1067 0.813610 CCAACACACCGACTGCAAGA 60.814 55.000 0.00 0.00 37.43 3.02
839 1068 0.304705 CAACACACCGACTGCAAGAC 59.695 55.000 0.00 0.00 37.43 3.01
840 1069 0.814010 AACACACCGACTGCAAGACC 60.814 55.000 0.00 0.00 37.43 3.85
841 1070 2.029073 ACACCGACTGCAAGACCG 59.971 61.111 0.00 0.00 37.43 4.79
842 1071 3.414700 CACCGACTGCAAGACCGC 61.415 66.667 0.00 0.00 37.43 5.68
845 1074 2.126618 CGACTGCAAGACCGCGTA 60.127 61.111 4.92 0.00 37.43 4.42
846 1075 2.434134 CGACTGCAAGACCGCGTAC 61.434 63.158 4.92 0.00 37.43 3.67
847 1076 2.430244 ACTGCAAGACCGCGTACG 60.430 61.111 11.84 11.84 37.43 3.67
848 1077 2.430244 CTGCAAGACCGCGTACGT 60.430 61.111 17.90 0.00 33.97 3.57
849 1078 1.154169 CTGCAAGACCGCGTACGTA 60.154 57.895 17.90 0.00 33.97 3.57
850 1079 1.400990 CTGCAAGACCGCGTACGTAC 61.401 60.000 17.90 15.90 33.97 3.67
861 1090 0.729116 CGTACGTACACAGTCCGGAT 59.271 55.000 24.50 0.00 0.00 4.18
878 1108 3.334691 CGGATACAACACAGACCACAAT 58.665 45.455 0.00 0.00 0.00 2.71
916 1146 2.081212 CGTTGGCGTCGACTGAGAC 61.081 63.158 14.70 0.25 37.76 3.36
923 1161 1.516365 CGTCGACTGAGACACACCCT 61.516 60.000 14.70 0.00 40.98 4.34
1117 1362 2.107141 GGAGCGACGGGGAAGATG 59.893 66.667 0.00 0.00 0.00 2.90
1143 1388 1.810030 GCCTGATTCCGTCGACCAC 60.810 63.158 10.58 0.00 0.00 4.16
1218 1467 4.711846 TCAGGTATATGATTGCGCTATCCT 59.288 41.667 25.40 19.26 0.00 3.24
1226 1475 0.104855 TTGCGCTATCCTGTAGCCAG 59.895 55.000 9.73 0.00 37.26 4.85
1520 1785 3.167485 ACTACGTACCCTCCATGTTTCA 58.833 45.455 0.00 0.00 0.00 2.69
2420 3277 2.235891 GGTGGAAAAGTGGTCGGAATT 58.764 47.619 0.00 0.00 0.00 2.17
2585 3467 8.248945 TCTTTTCTACTTATTGTTAGGAGTCGG 58.751 37.037 0.00 0.00 0.00 4.79
2776 4368 5.766222 CAAATCAAGAACTGGGTCTTTGAG 58.234 41.667 0.00 0.00 35.63 3.02
2841 4436 6.985188 TGCTGAGAGTACAAAATGGATTAC 57.015 37.500 0.00 0.00 0.00 1.89
2970 4588 3.118992 GGACAATTTTCCTGAAGCCATCC 60.119 47.826 3.23 0.00 32.24 3.51
3074 4753 8.617809 GTCAAAAACGCTCTTATATTATGGGAA 58.382 33.333 0.00 0.00 0.00 3.97
3134 4831 6.721318 TCCCTCTTTAGCATTTGTCAACTAT 58.279 36.000 0.00 0.00 0.00 2.12
3170 4880 1.581447 CGTTGGGCCTTTCTGAAGC 59.419 57.895 4.53 0.00 0.00 3.86
3265 5061 8.749499 CAAAGATTGCTTACTCTGAAAGTTTTG 58.251 33.333 0.00 0.00 39.55 2.44
3267 5063 8.000780 AGATTGCTTACTCTGAAAGTTTTGTT 57.999 30.769 0.00 0.00 39.55 2.83
3296 5093 5.531287 CCCCTGTATACCTTGCTTGAAATAC 59.469 44.000 0.00 0.00 0.00 1.89
3550 5489 5.163663 GGATCTAATGCTGAGATACTCGGAG 60.164 48.000 11.17 2.83 39.05 4.63
3637 5593 9.184523 TGGGTGTATTAATGAGGTGAAAATAAG 57.815 33.333 0.00 0.00 0.00 1.73
3739 5782 1.028330 ATGAGCACATGCAAGGTCCG 61.028 55.000 6.64 0.00 45.16 4.79
3933 5994 2.271800 CGAAGCACCATAGAGTTGACC 58.728 52.381 0.00 0.00 0.00 4.02
4206 6301 9.504708 TGGAAGTTTATGGTTTTCGTAAATAGA 57.495 29.630 0.00 0.00 38.60 1.98
4248 6777 4.394300 GGAGAACAGACTTCATCCATGTTG 59.606 45.833 0.00 0.00 34.41 3.33
4274 6804 1.064166 ACCCAAGCATCCATCTTCCAG 60.064 52.381 0.00 0.00 0.00 3.86
4299 6834 5.265989 TGTAGACTTGGAAGTTTTTGGGTT 58.734 37.500 0.00 0.00 39.88 4.11
4300 6835 5.717654 TGTAGACTTGGAAGTTTTTGGGTTT 59.282 36.000 0.00 0.00 39.88 3.27
4301 6836 5.755409 AGACTTGGAAGTTTTTGGGTTTT 57.245 34.783 0.00 0.00 39.88 2.43
4421 6962 1.291184 TTGCATGTTCGCTCTCCGTG 61.291 55.000 0.00 0.00 38.35 4.94
4478 7020 1.340889 GAGAGGTGGTTTGCATGCAAA 59.659 47.619 35.80 35.80 42.77 3.68
4480 7022 2.137523 GAGGTGGTTTGCATGCAAAAG 58.862 47.619 39.49 0.00 45.86 2.27
4498 7040 6.709846 TGCAAAAGGAAGGATTGTTTATTTGG 59.290 34.615 0.00 0.00 0.00 3.28
4562 7116 3.681594 GCCAGATTGAGGACGGATGTTTA 60.682 47.826 0.00 0.00 0.00 2.01
4603 7157 4.968719 TGATGGATACTTACCTGTGACCAT 59.031 41.667 0.00 0.00 38.65 3.55
4604 7158 6.140377 TGATGGATACTTACCTGTGACCATA 58.860 40.000 0.00 0.00 37.33 2.74
4605 7159 6.787458 TGATGGATACTTACCTGTGACCATAT 59.213 38.462 0.00 0.00 37.33 1.78
4606 7160 6.665992 TGGATACTTACCTGTGACCATATC 57.334 41.667 0.00 0.00 37.61 1.63
4607 7161 6.382087 TGGATACTTACCTGTGACCATATCT 58.618 40.000 0.00 0.00 37.61 1.98
4608 7162 7.532199 TGGATACTTACCTGTGACCATATCTA 58.468 38.462 0.00 0.00 37.61 1.98
4609 7163 7.670140 TGGATACTTACCTGTGACCATATCTAG 59.330 40.741 0.00 0.00 37.61 2.43
4610 7164 7.670559 GGATACTTACCTGTGACCATATCTAGT 59.329 40.741 0.00 0.00 0.00 2.57
4611 7165 9.736414 GATACTTACCTGTGACCATATCTAGTA 57.264 37.037 0.00 0.00 0.00 1.82
4613 7167 8.410673 ACTTACCTGTGACCATATCTAGTATG 57.589 38.462 0.00 0.00 39.95 2.39
4614 7168 5.730296 ACCTGTGACCATATCTAGTATGC 57.270 43.478 6.75 0.00 39.10 3.14
4615 7169 5.398236 ACCTGTGACCATATCTAGTATGCT 58.602 41.667 6.75 0.00 39.10 3.79
4616 7170 6.552932 ACCTGTGACCATATCTAGTATGCTA 58.447 40.000 6.75 0.00 39.10 3.49
4617 7171 6.661377 ACCTGTGACCATATCTAGTATGCTAG 59.339 42.308 11.33 11.33 44.60 3.42
4792 7348 7.288810 TGTTTGTTGCCTTATCTCATTTTCT 57.711 32.000 0.00 0.00 0.00 2.52
4803 7359 9.088512 CCTTATCTCATTTTCTGTACACTACAC 57.911 37.037 0.00 0.00 34.46 2.90
4812 7368 3.124128 TCTGTACACTACACGCTAAGACG 59.876 47.826 0.00 0.00 34.46 4.18
4835 7391 2.421529 GGGGATGTGGTGTATCCTTGTC 60.422 54.545 0.00 0.00 42.97 3.18
4887 7443 8.668510 AATATTCATACAGAGTTTAGGCACTG 57.331 34.615 0.00 0.00 41.52 3.66
4962 9917 2.779755 TACACACCATCCCATCACAC 57.220 50.000 0.00 0.00 0.00 3.82
4964 9919 1.271543 ACACACCATCCCATCACACAG 60.272 52.381 0.00 0.00 0.00 3.66
4969 9924 0.323633 CATCCCATCACACAGGGCAA 60.324 55.000 0.00 0.00 45.07 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.245438 GAGGGAGGAAGGAGGCGTTG 62.245 65.000 0.00 0.00 0.00 4.10
1 2 1.990614 GAGGGAGGAAGGAGGCGTT 60.991 63.158 0.00 0.00 0.00 4.84
2 3 2.364448 GAGGGAGGAAGGAGGCGT 60.364 66.667 0.00 0.00 0.00 5.68
3 4 1.268283 AAAGAGGGAGGAAGGAGGCG 61.268 60.000 0.00 0.00 0.00 5.52
4 5 0.544223 GAAAGAGGGAGGAAGGAGGC 59.456 60.000 0.00 0.00 0.00 4.70
5 6 1.958288 TGAAAGAGGGAGGAAGGAGG 58.042 55.000 0.00 0.00 0.00 4.30
6 7 2.355615 GCTTGAAAGAGGGAGGAAGGAG 60.356 54.545 0.00 0.00 0.00 3.69
7 8 1.630878 GCTTGAAAGAGGGAGGAAGGA 59.369 52.381 0.00 0.00 0.00 3.36
8 9 1.352352 TGCTTGAAAGAGGGAGGAAGG 59.648 52.381 0.00 0.00 0.00 3.46
9 10 2.816672 GTTGCTTGAAAGAGGGAGGAAG 59.183 50.000 0.00 0.00 0.00 3.46
10 11 2.489073 GGTTGCTTGAAAGAGGGAGGAA 60.489 50.000 0.00 0.00 0.00 3.36
11 12 1.073923 GGTTGCTTGAAAGAGGGAGGA 59.926 52.381 0.00 0.00 0.00 3.71
12 13 1.539157 GGTTGCTTGAAAGAGGGAGG 58.461 55.000 0.00 0.00 0.00 4.30
13 14 1.539157 GGGTTGCTTGAAAGAGGGAG 58.461 55.000 0.00 0.00 0.00 4.30
14 15 0.112412 GGGGTTGCTTGAAAGAGGGA 59.888 55.000 0.00 0.00 0.00 4.20
15 16 0.900182 GGGGGTTGCTTGAAAGAGGG 60.900 60.000 0.00 0.00 0.00 4.30
16 17 0.178964 TGGGGGTTGCTTGAAAGAGG 60.179 55.000 0.00 0.00 0.00 3.69
17 18 0.961753 GTGGGGGTTGCTTGAAAGAG 59.038 55.000 0.00 0.00 0.00 2.85
18 19 0.469144 GGTGGGGGTTGCTTGAAAGA 60.469 55.000 0.00 0.00 0.00 2.52
19 20 0.469892 AGGTGGGGGTTGCTTGAAAG 60.470 55.000 0.00 0.00 0.00 2.62
20 21 0.469144 GAGGTGGGGGTTGCTTGAAA 60.469 55.000 0.00 0.00 0.00 2.69
21 22 1.152830 GAGGTGGGGGTTGCTTGAA 59.847 57.895 0.00 0.00 0.00 2.69
22 23 1.774217 AGAGGTGGGGGTTGCTTGA 60.774 57.895 0.00 0.00 0.00 3.02
23 24 1.604593 CAGAGGTGGGGGTTGCTTG 60.605 63.158 0.00 0.00 0.00 4.01
24 25 2.845345 CCAGAGGTGGGGGTTGCTT 61.845 63.158 0.00 0.00 40.67 3.91
25 26 3.260100 CCAGAGGTGGGGGTTGCT 61.260 66.667 0.00 0.00 40.67 3.91
33 34 2.281761 GTGTGTGCCCAGAGGTGG 60.282 66.667 0.00 0.00 44.56 4.61
34 35 2.666190 CGTGTGTGCCCAGAGGTG 60.666 66.667 0.00 0.00 34.57 4.00
35 36 2.842462 TCGTGTGTGCCCAGAGGT 60.842 61.111 0.00 0.00 34.57 3.85
36 37 2.047844 CTCGTGTGTGCCCAGAGG 60.048 66.667 0.00 0.00 0.00 3.69
37 38 2.740055 GCTCGTGTGTGCCCAGAG 60.740 66.667 0.00 0.00 0.00 3.35
38 39 3.233980 AGCTCGTGTGTGCCCAGA 61.234 61.111 0.00 0.00 35.20 3.86
39 40 3.046087 CAGCTCGTGTGTGCCCAG 61.046 66.667 0.00 0.00 35.20 4.45
42 43 2.620112 ATTGCAGCTCGTGTGTGCC 61.620 57.895 10.23 0.00 36.31 5.01
43 44 1.441515 CATTGCAGCTCGTGTGTGC 60.442 57.895 0.00 6.92 37.73 4.57
44 45 1.441515 GCATTGCAGCTCGTGTGTG 60.442 57.895 3.15 0.00 0.00 3.82
45 46 2.949106 GCATTGCAGCTCGTGTGT 59.051 55.556 3.15 0.00 0.00 3.72
46 47 2.202260 CGCATTGCAGCTCGTGTG 60.202 61.111 9.69 0.00 0.00 3.82
47 48 4.093952 GCGCATTGCAGCTCGTGT 62.094 61.111 9.69 0.00 45.45 4.49
70 71 1.006832 ATCACCGTTACAGCATTCGC 58.993 50.000 0.00 0.00 38.99 4.70
71 72 1.327460 CCATCACCGTTACAGCATTCG 59.673 52.381 0.00 0.00 0.00 3.34
72 73 2.351726 GTCCATCACCGTTACAGCATTC 59.648 50.000 0.00 0.00 0.00 2.67
73 74 2.356135 GTCCATCACCGTTACAGCATT 58.644 47.619 0.00 0.00 0.00 3.56
74 75 1.739035 CGTCCATCACCGTTACAGCAT 60.739 52.381 0.00 0.00 0.00 3.79
75 76 0.389296 CGTCCATCACCGTTACAGCA 60.389 55.000 0.00 0.00 0.00 4.41
76 77 1.082117 CCGTCCATCACCGTTACAGC 61.082 60.000 0.00 0.00 0.00 4.40
77 78 0.459585 CCCGTCCATCACCGTTACAG 60.460 60.000 0.00 0.00 0.00 2.74
78 79 0.899253 TCCCGTCCATCACCGTTACA 60.899 55.000 0.00 0.00 0.00 2.41
79 80 0.179119 CTCCCGTCCATCACCGTTAC 60.179 60.000 0.00 0.00 0.00 2.50
80 81 1.952102 GCTCCCGTCCATCACCGTTA 61.952 60.000 0.00 0.00 0.00 3.18
81 82 2.978824 CTCCCGTCCATCACCGTT 59.021 61.111 0.00 0.00 0.00 4.44
82 83 3.771160 GCTCCCGTCCATCACCGT 61.771 66.667 0.00 0.00 0.00 4.83
83 84 3.723235 CTGCTCCCGTCCATCACCG 62.723 68.421 0.00 0.00 0.00 4.94
84 85 2.187946 CTGCTCCCGTCCATCACC 59.812 66.667 0.00 0.00 0.00 4.02
85 86 2.512515 GCTGCTCCCGTCCATCAC 60.513 66.667 0.00 0.00 0.00 3.06
86 87 4.147449 CGCTGCTCCCGTCCATCA 62.147 66.667 0.00 0.00 0.00 3.07
87 88 3.838271 TCGCTGCTCCCGTCCATC 61.838 66.667 0.00 0.00 0.00 3.51
88 89 4.148825 GTCGCTGCTCCCGTCCAT 62.149 66.667 0.00 0.00 0.00 3.41
91 92 4.373116 TTGGTCGCTGCTCCCGTC 62.373 66.667 0.00 0.00 0.00 4.79
92 93 4.681978 GTTGGTCGCTGCTCCCGT 62.682 66.667 0.00 0.00 0.00 5.28
102 103 3.118454 AATGCTCGCCGTTGGTCG 61.118 61.111 0.00 0.00 39.52 4.79
103 104 2.480555 CAATGCTCGCCGTTGGTC 59.519 61.111 0.00 0.00 36.91 4.02
106 107 4.481112 GGCCAATGCTCGCCGTTG 62.481 66.667 0.00 2.11 39.63 4.10
112 113 3.869272 GTCGCAGGCCAATGCTCG 61.869 66.667 14.45 4.05 44.24 5.03
113 114 2.747460 TGTCGCAGGCCAATGCTC 60.747 61.111 14.45 8.32 44.24 4.26
114 115 2.749044 CTGTCGCAGGCCAATGCT 60.749 61.111 14.45 0.00 44.24 3.79
115 116 2.747460 TCTGTCGCAGGCCAATGC 60.747 61.111 5.01 6.13 42.95 3.56
116 117 2.110967 CCTCTGTCGCAGGCCAATG 61.111 63.158 5.01 0.00 31.51 2.82
117 118 2.270205 CCTCTGTCGCAGGCCAAT 59.730 61.111 5.01 0.00 31.51 3.16
122 123 2.758089 GCATTGCCTCTGTCGCAGG 61.758 63.158 0.00 0.00 37.57 4.85
123 124 0.460811 TAGCATTGCCTCTGTCGCAG 60.461 55.000 4.70 1.02 37.57 5.18
124 125 0.460811 CTAGCATTGCCTCTGTCGCA 60.461 55.000 4.70 0.00 0.00 5.10
125 126 0.179100 TCTAGCATTGCCTCTGTCGC 60.179 55.000 4.70 0.00 0.00 5.19
126 127 1.929836 GTTCTAGCATTGCCTCTGTCG 59.070 52.381 4.70 0.00 0.00 4.35
127 128 2.284190 GGTTCTAGCATTGCCTCTGTC 58.716 52.381 4.70 0.00 0.00 3.51
128 129 1.406069 CGGTTCTAGCATTGCCTCTGT 60.406 52.381 4.70 0.00 0.00 3.41
129 130 1.293924 CGGTTCTAGCATTGCCTCTG 58.706 55.000 4.70 0.00 0.00 3.35
130 131 0.462759 GCGGTTCTAGCATTGCCTCT 60.463 55.000 4.70 0.00 34.19 3.69
131 132 0.462759 AGCGGTTCTAGCATTGCCTC 60.463 55.000 4.70 0.00 37.01 4.70
132 133 0.745845 CAGCGGTTCTAGCATTGCCT 60.746 55.000 4.70 0.00 37.01 4.75
133 134 1.026718 ACAGCGGTTCTAGCATTGCC 61.027 55.000 4.70 0.00 37.01 4.52
134 135 0.804989 AACAGCGGTTCTAGCATTGC 59.195 50.000 0.00 0.00 37.01 3.56
135 136 2.076100 TCAACAGCGGTTCTAGCATTG 58.924 47.619 0.00 0.00 34.21 2.82
136 137 2.076863 GTCAACAGCGGTTCTAGCATT 58.923 47.619 0.00 0.00 34.21 3.56
137 138 1.676014 GGTCAACAGCGGTTCTAGCAT 60.676 52.381 0.00 0.00 34.21 3.79
138 139 0.320421 GGTCAACAGCGGTTCTAGCA 60.320 55.000 0.00 0.00 34.21 3.49
139 140 1.019805 GGGTCAACAGCGGTTCTAGC 61.020 60.000 0.00 0.90 34.21 3.42
140 141 0.391263 GGGGTCAACAGCGGTTCTAG 60.391 60.000 0.00 0.00 34.21 2.43
141 142 1.675219 GGGGTCAACAGCGGTTCTA 59.325 57.895 0.00 0.00 34.21 2.10
142 143 2.430367 GGGGTCAACAGCGGTTCT 59.570 61.111 0.00 0.00 34.21 3.01
143 144 2.671963 GGGGGTCAACAGCGGTTC 60.672 66.667 0.00 0.00 34.21 3.62
144 145 4.636435 CGGGGGTCAACAGCGGTT 62.636 66.667 0.00 0.00 37.87 4.44
147 148 3.605749 ATCACGGGGGTCAACAGCG 62.606 63.158 0.00 0.00 0.00 5.18
148 149 2.040544 CATCACGGGGGTCAACAGC 61.041 63.158 0.00 0.00 0.00 4.40
149 150 2.040544 GCATCACGGGGGTCAACAG 61.041 63.158 0.00 0.00 0.00 3.16
150 151 2.033448 GCATCACGGGGGTCAACA 59.967 61.111 0.00 0.00 0.00 3.33
151 152 1.602323 TTGCATCACGGGGGTCAAC 60.602 57.895 0.00 0.00 0.00 3.18
152 153 1.602323 GTTGCATCACGGGGGTCAA 60.602 57.895 0.00 0.00 0.00 3.18
153 154 2.033448 GTTGCATCACGGGGGTCA 59.967 61.111 0.00 0.00 0.00 4.02
154 155 2.750237 GGTTGCATCACGGGGGTC 60.750 66.667 0.00 0.00 0.00 4.46
155 156 4.715523 CGGTTGCATCACGGGGGT 62.716 66.667 0.00 0.00 0.00 4.95
160 161 1.502990 TTGTCACCGGTTGCATCACG 61.503 55.000 2.97 0.00 0.00 4.35
161 162 0.238289 CTTGTCACCGGTTGCATCAC 59.762 55.000 2.97 0.00 0.00 3.06
162 163 0.107643 TCTTGTCACCGGTTGCATCA 59.892 50.000 2.97 0.00 0.00 3.07
163 164 1.453155 ATCTTGTCACCGGTTGCATC 58.547 50.000 2.97 0.00 0.00 3.91
164 165 2.632377 CTATCTTGTCACCGGTTGCAT 58.368 47.619 2.97 0.00 0.00 3.96
165 166 1.943968 GCTATCTTGTCACCGGTTGCA 60.944 52.381 2.97 3.56 0.00 4.08
166 167 0.727398 GCTATCTTGTCACCGGTTGC 59.273 55.000 2.97 0.15 0.00 4.17
167 168 2.386661 AGCTATCTTGTCACCGGTTG 57.613 50.000 2.97 0.00 0.00 3.77
168 169 2.301870 TGAAGCTATCTTGTCACCGGTT 59.698 45.455 2.97 0.00 31.48 4.44
169 170 1.899814 TGAAGCTATCTTGTCACCGGT 59.100 47.619 0.00 0.00 31.48 5.28
170 171 2.672961 TGAAGCTATCTTGTCACCGG 57.327 50.000 0.00 0.00 31.48 5.28
171 172 2.673368 GGTTGAAGCTATCTTGTCACCG 59.327 50.000 0.00 0.00 31.48 4.94
172 173 3.935828 GAGGTTGAAGCTATCTTGTCACC 59.064 47.826 0.00 0.00 31.48 4.02
173 174 4.826556 AGAGGTTGAAGCTATCTTGTCAC 58.173 43.478 0.00 0.00 31.48 3.67
174 175 5.952347 TCTAGAGGTTGAAGCTATCTTGTCA 59.048 40.000 0.00 0.00 31.48 3.58
175 176 6.458232 TCTAGAGGTTGAAGCTATCTTGTC 57.542 41.667 0.00 0.00 31.48 3.18
176 177 6.609212 TCATCTAGAGGTTGAAGCTATCTTGT 59.391 38.462 4.02 0.00 31.48 3.16
177 178 7.048629 TCATCTAGAGGTTGAAGCTATCTTG 57.951 40.000 4.02 0.00 31.48 3.02
178 179 7.667575 TTCATCTAGAGGTTGAAGCTATCTT 57.332 36.000 4.02 0.00 32.06 2.40
179 180 7.667575 TTTCATCTAGAGGTTGAAGCTATCT 57.332 36.000 4.02 0.00 35.75 1.98
180 181 8.723942 TTTTTCATCTAGAGGTTGAAGCTATC 57.276 34.615 4.02 0.00 35.75 2.08
181 182 7.281999 GCTTTTTCATCTAGAGGTTGAAGCTAT 59.718 37.037 21.92 0.00 35.75 2.97
182 183 6.595716 GCTTTTTCATCTAGAGGTTGAAGCTA 59.404 38.462 21.92 4.64 35.75 3.32
183 184 5.414144 GCTTTTTCATCTAGAGGTTGAAGCT 59.586 40.000 21.92 0.00 35.75 3.74
184 185 5.414144 AGCTTTTTCATCTAGAGGTTGAAGC 59.586 40.000 21.80 21.80 35.75 3.86
185 186 7.173907 TGAAGCTTTTTCATCTAGAGGTTGAAG 59.826 37.037 0.00 7.87 35.75 3.02
186 187 6.998074 TGAAGCTTTTTCATCTAGAGGTTGAA 59.002 34.615 0.00 3.79 33.40 2.69
187 188 6.533730 TGAAGCTTTTTCATCTAGAGGTTGA 58.466 36.000 0.00 0.00 0.00 3.18
188 189 6.808008 TGAAGCTTTTTCATCTAGAGGTTG 57.192 37.500 0.00 0.00 0.00 3.77
189 190 7.148340 CGATTGAAGCTTTTTCATCTAGAGGTT 60.148 37.037 0.00 0.00 0.00 3.50
190 191 6.314896 CGATTGAAGCTTTTTCATCTAGAGGT 59.685 38.462 0.00 0.00 0.00 3.85
191 192 6.238320 CCGATTGAAGCTTTTTCATCTAGAGG 60.238 42.308 0.00 0.00 0.00 3.69
192 193 6.713520 CCGATTGAAGCTTTTTCATCTAGAG 58.286 40.000 0.00 0.00 0.00 2.43
193 194 5.065218 GCCGATTGAAGCTTTTTCATCTAGA 59.935 40.000 0.00 0.00 0.00 2.43
194 195 5.065731 AGCCGATTGAAGCTTTTTCATCTAG 59.934 40.000 0.00 0.00 35.22 2.43
195 196 4.943705 AGCCGATTGAAGCTTTTTCATCTA 59.056 37.500 0.00 0.00 35.22 1.98
196 197 3.760684 AGCCGATTGAAGCTTTTTCATCT 59.239 39.130 0.00 0.00 35.22 2.90
197 198 4.102035 AGCCGATTGAAGCTTTTTCATC 57.898 40.909 0.00 0.00 35.22 2.92
198 199 5.841957 ATAGCCGATTGAAGCTTTTTCAT 57.158 34.783 0.00 0.00 40.56 2.57
199 200 6.112734 TCTATAGCCGATTGAAGCTTTTTCA 58.887 36.000 0.00 0.00 40.56 2.69
200 201 6.480320 TCTCTATAGCCGATTGAAGCTTTTTC 59.520 38.462 0.00 0.00 40.56 2.29
201 202 6.349300 TCTCTATAGCCGATTGAAGCTTTTT 58.651 36.000 0.00 0.00 40.56 1.94
202 203 5.918608 TCTCTATAGCCGATTGAAGCTTTT 58.081 37.500 0.00 0.00 40.56 2.27
203 204 5.537300 TCTCTATAGCCGATTGAAGCTTT 57.463 39.130 0.00 0.00 40.56 3.51
204 205 5.537300 TTCTCTATAGCCGATTGAAGCTT 57.463 39.130 0.00 0.00 40.56 3.74
205 206 5.537188 CTTTCTCTATAGCCGATTGAAGCT 58.463 41.667 0.00 0.00 43.20 3.74
206 207 4.151512 GCTTTCTCTATAGCCGATTGAAGC 59.848 45.833 0.00 3.62 0.00 3.86
207 208 5.537188 AGCTTTCTCTATAGCCGATTGAAG 58.463 41.667 0.00 0.00 38.14 3.02
208 209 5.537300 AGCTTTCTCTATAGCCGATTGAA 57.463 39.130 0.00 0.00 38.14 2.69
209 210 5.537300 AAGCTTTCTCTATAGCCGATTGA 57.463 39.130 0.00 0.00 38.14 2.57
210 211 7.307455 GGTTAAAGCTTTCTCTATAGCCGATTG 60.307 40.741 16.57 0.00 38.14 2.67
211 212 6.706716 GGTTAAAGCTTTCTCTATAGCCGATT 59.293 38.462 16.57 0.00 38.14 3.34
212 213 6.224584 GGTTAAAGCTTTCTCTATAGCCGAT 58.775 40.000 16.57 0.00 38.14 4.18
213 214 5.598769 GGTTAAAGCTTTCTCTATAGCCGA 58.401 41.667 16.57 0.00 38.14 5.54
214 215 4.444720 CGGTTAAAGCTTTCTCTATAGCCG 59.555 45.833 16.57 15.75 38.14 5.52
215 216 4.750598 CCGGTTAAAGCTTTCTCTATAGCC 59.249 45.833 16.57 7.56 38.14 3.93
216 217 4.211584 GCCGGTTAAAGCTTTCTCTATAGC 59.788 45.833 16.57 7.78 37.66 2.97
217 218 5.234543 GTGCCGGTTAAAGCTTTCTCTATAG 59.765 44.000 16.57 1.30 0.00 1.31
218 219 5.105064 AGTGCCGGTTAAAGCTTTCTCTATA 60.105 40.000 16.57 0.00 0.00 1.31
219 220 3.939592 GTGCCGGTTAAAGCTTTCTCTAT 59.060 43.478 16.57 0.00 0.00 1.98
220 221 3.007614 AGTGCCGGTTAAAGCTTTCTCTA 59.992 43.478 16.57 0.00 0.00 2.43
221 222 2.152016 GTGCCGGTTAAAGCTTTCTCT 58.848 47.619 16.57 0.00 0.00 3.10
222 223 2.095718 CAGTGCCGGTTAAAGCTTTCTC 60.096 50.000 16.57 9.79 0.00 2.87
223 224 1.880027 CAGTGCCGGTTAAAGCTTTCT 59.120 47.619 16.57 0.58 0.00 2.52
224 225 1.666023 GCAGTGCCGGTTAAAGCTTTC 60.666 52.381 16.57 1.70 0.00 2.62
225 226 0.313987 GCAGTGCCGGTTAAAGCTTT 59.686 50.000 17.30 17.30 0.00 3.51
226 227 1.524008 GGCAGTGCCGGTTAAAGCTT 61.524 55.000 20.55 0.00 39.62 3.74
227 228 1.971695 GGCAGTGCCGGTTAAAGCT 60.972 57.895 20.55 0.00 39.62 3.74
228 229 2.566529 GGCAGTGCCGGTTAAAGC 59.433 61.111 20.55 0.98 39.62 3.51
244 245 1.402787 AGCTTATTTGCCCCGATTGG 58.597 50.000 0.00 0.00 0.00 3.16
245 246 2.948979 TGTAGCTTATTTGCCCCGATTG 59.051 45.455 0.00 0.00 0.00 2.67
246 247 3.290948 TGTAGCTTATTTGCCCCGATT 57.709 42.857 0.00 0.00 0.00 3.34
247 248 2.949644 GTTGTAGCTTATTTGCCCCGAT 59.050 45.455 0.00 0.00 0.00 4.18
248 249 2.361789 GTTGTAGCTTATTTGCCCCGA 58.638 47.619 0.00 0.00 0.00 5.14
249 250 1.404035 GGTTGTAGCTTATTTGCCCCG 59.596 52.381 0.00 0.00 0.00 5.73
250 251 1.404035 CGGTTGTAGCTTATTTGCCCC 59.596 52.381 0.00 0.00 0.00 5.80
251 252 2.089201 ACGGTTGTAGCTTATTTGCCC 58.911 47.619 0.00 0.00 0.00 5.36
252 253 3.189702 TCAACGGTTGTAGCTTATTTGCC 59.810 43.478 19.47 0.00 0.00 4.52
253 254 4.156182 GTCAACGGTTGTAGCTTATTTGC 58.844 43.478 19.47 0.00 0.00 3.68
254 255 5.144359 GTGTCAACGGTTGTAGCTTATTTG 58.856 41.667 19.47 0.00 0.00 2.32
255 256 4.817464 TGTGTCAACGGTTGTAGCTTATTT 59.183 37.500 19.47 0.00 0.00 1.40
256 257 4.382291 TGTGTCAACGGTTGTAGCTTATT 58.618 39.130 19.47 0.00 0.00 1.40
257 258 3.994392 CTGTGTCAACGGTTGTAGCTTAT 59.006 43.478 19.47 0.00 0.00 1.73
258 259 3.068448 TCTGTGTCAACGGTTGTAGCTTA 59.932 43.478 19.47 0.00 34.03 3.09
259 260 2.159014 TCTGTGTCAACGGTTGTAGCTT 60.159 45.455 19.47 0.00 34.03 3.74
260 261 1.411246 TCTGTGTCAACGGTTGTAGCT 59.589 47.619 19.47 0.00 34.03 3.32
261 262 1.860676 TCTGTGTCAACGGTTGTAGC 58.139 50.000 19.47 11.88 34.03 3.58
262 263 3.186409 CCATTCTGTGTCAACGGTTGTAG 59.814 47.826 19.47 13.47 34.03 2.74
263 264 3.135225 CCATTCTGTGTCAACGGTTGTA 58.865 45.455 19.47 8.35 34.03 2.41
264 265 1.946768 CCATTCTGTGTCAACGGTTGT 59.053 47.619 19.47 0.00 34.03 3.32
265 266 1.946768 ACCATTCTGTGTCAACGGTTG 59.053 47.619 14.62 14.62 34.03 3.77
266 267 2.218603 GACCATTCTGTGTCAACGGTT 58.781 47.619 0.00 0.00 34.03 4.44
267 268 1.542547 GGACCATTCTGTGTCAACGGT 60.543 52.381 0.00 0.00 34.03 4.83
268 269 1.156736 GGACCATTCTGTGTCAACGG 58.843 55.000 0.00 0.00 33.09 4.44
269 270 1.877637 TGGACCATTCTGTGTCAACG 58.122 50.000 0.00 0.00 33.09 4.10
270 271 4.074970 AGATTGGACCATTCTGTGTCAAC 58.925 43.478 16.40 0.00 33.09 3.18
271 272 4.371624 AGATTGGACCATTCTGTGTCAA 57.628 40.909 16.40 0.00 33.09 3.18
272 273 4.371624 AAGATTGGACCATTCTGTGTCA 57.628 40.909 17.56 0.00 33.09 3.58
273 274 5.734720 TCTAAGATTGGACCATTCTGTGTC 58.265 41.667 17.56 0.00 0.00 3.67
274 275 5.762179 TCTAAGATTGGACCATTCTGTGT 57.238 39.130 17.56 6.91 0.00 3.72
275 276 6.351711 TCATCTAAGATTGGACCATTCTGTG 58.648 40.000 17.56 13.43 0.00 3.66
276 277 6.566079 TCATCTAAGATTGGACCATTCTGT 57.434 37.500 17.56 11.15 0.00 3.41
277 278 7.337689 TGTTTCATCTAAGATTGGACCATTCTG 59.662 37.037 17.56 8.13 0.00 3.02
278 279 7.405292 TGTTTCATCTAAGATTGGACCATTCT 58.595 34.615 12.26 12.26 0.00 2.40
279 280 7.630242 TGTTTCATCTAAGATTGGACCATTC 57.370 36.000 8.11 8.11 0.00 2.67
280 281 7.363268 GCTTGTTTCATCTAAGATTGGACCATT 60.363 37.037 0.00 0.00 0.00 3.16
281 282 6.096001 GCTTGTTTCATCTAAGATTGGACCAT 59.904 38.462 0.00 0.00 0.00 3.55
282 283 5.415701 GCTTGTTTCATCTAAGATTGGACCA 59.584 40.000 0.00 0.00 0.00 4.02
283 284 5.649831 AGCTTGTTTCATCTAAGATTGGACC 59.350 40.000 0.00 0.00 0.00 4.46
284 285 6.749923 AGCTTGTTTCATCTAAGATTGGAC 57.250 37.500 0.00 0.00 0.00 4.02
285 286 6.942005 TGAAGCTTGTTTCATCTAAGATTGGA 59.058 34.615 2.10 0.00 31.04 3.53
286 287 7.149569 TGAAGCTTGTTTCATCTAAGATTGG 57.850 36.000 2.10 0.00 31.04 3.16
287 288 8.295288 AGTTGAAGCTTGTTTCATCTAAGATTG 58.705 33.333 2.10 0.00 36.08 2.67
288 289 8.401490 AGTTGAAGCTTGTTTCATCTAAGATT 57.599 30.769 2.10 0.00 36.08 2.40
289 290 7.992754 AGTTGAAGCTTGTTTCATCTAAGAT 57.007 32.000 2.10 0.00 36.08 2.40
319 320 4.779987 CGCCTGGTTAAAGTTTTGTCTAC 58.220 43.478 0.00 0.00 0.00 2.59
358 360 5.831997 AGCTTTTCTGTCAATGGTTACAAC 58.168 37.500 0.00 0.00 0.00 3.32
362 364 5.049680 GTCGAAGCTTTTCTGTCAATGGTTA 60.050 40.000 0.00 0.00 0.00 2.85
374 376 6.903883 TTCCATATACAGTCGAAGCTTTTC 57.096 37.500 0.00 0.00 0.00 2.29
380 382 6.291849 CGAGCTTTTTCCATATACAGTCGAAG 60.292 42.308 0.00 0.00 0.00 3.79
384 386 6.238130 GGTTCGAGCTTTTTCCATATACAGTC 60.238 42.308 0.00 0.00 0.00 3.51
387 389 4.569162 CGGTTCGAGCTTTTTCCATATACA 59.431 41.667 0.00 0.00 0.00 2.29
388 390 4.025145 CCGGTTCGAGCTTTTTCCATATAC 60.025 45.833 0.00 0.00 0.00 1.47
399 401 2.283676 TCTCCCCGGTTCGAGCTT 60.284 61.111 0.00 0.00 0.00 3.74
405 411 3.908643 AACTTATTCTCTCCCCGGTTC 57.091 47.619 0.00 0.00 0.00 3.62
412 418 7.148623 CGTGTCTGGTTAAAACTTATTCTCTCC 60.149 40.741 0.00 0.00 0.00 3.71
420 426 3.560896 GCACCGTGTCTGGTTAAAACTTA 59.439 43.478 0.00 0.00 41.38 2.24
427 433 1.070105 GGTGCACCGTGTCTGGTTA 59.930 57.895 22.49 0.00 41.38 2.85
430 436 1.079819 CTAGGTGCACCGTGTCTGG 60.080 63.158 29.68 10.64 42.08 3.86
437 443 2.969443 CAACTTTTCTAGGTGCACCG 57.031 50.000 29.68 17.06 42.08 4.94
444 477 2.096417 CGACGGTTGCAACTTTTCTAGG 60.096 50.000 27.64 10.23 0.00 3.02
461 494 2.803451 AGCAAGCTTTCTCTATCGACG 58.197 47.619 0.00 0.00 0.00 5.12
463 496 5.238868 ACGTATAGCAAGCTTTCTCTATCGA 59.761 40.000 21.53 0.00 0.00 3.59
467 500 5.578005 ACACGTATAGCAAGCTTTCTCTA 57.422 39.130 0.58 2.24 0.00 2.43
469 502 5.532025 AAACACGTATAGCAAGCTTTCTC 57.468 39.130 0.58 0.00 0.00 2.87
495 601 2.290367 CGTGTCACTGATTCCAGCAAAA 59.710 45.455 0.65 0.00 44.16 2.44
525 634 3.937706 CCAGCAAATAGACTCTCTGGTTG 59.062 47.826 0.00 0.00 37.05 3.77
538 647 2.124901 CGCCGGTCCCAGCAAATA 60.125 61.111 1.90 0.00 0.00 1.40
555 664 4.385405 AGCTCGCCACTGCCTGAC 62.385 66.667 0.00 0.00 0.00 3.51
583 692 3.414700 CGTCGCTGGTGCAACTCC 61.415 66.667 2.04 0.00 39.64 3.85
584 693 3.414700 CCGTCGCTGGTGCAACTC 61.415 66.667 2.04 0.00 39.64 3.01
585 694 4.235762 ACCGTCGCTGGTGCAACT 62.236 61.111 2.04 0.00 41.85 3.16
592 701 4.742201 CTCCACCACCGTCGCTGG 62.742 72.222 4.99 4.99 34.62 4.85
599 708 4.680237 TTCGCAGCTCCACCACCG 62.680 66.667 0.00 0.00 0.00 4.94
600 709 2.743928 CTTCGCAGCTCCACCACC 60.744 66.667 0.00 0.00 0.00 4.61
601 710 2.743928 CCTTCGCAGCTCCACCAC 60.744 66.667 0.00 0.00 0.00 4.16
602 711 2.922503 TCCTTCGCAGCTCCACCA 60.923 61.111 0.00 0.00 0.00 4.17
603 712 2.125350 CTCCTTCGCAGCTCCACC 60.125 66.667 0.00 0.00 0.00 4.61
604 713 1.739562 CACTCCTTCGCAGCTCCAC 60.740 63.158 0.00 0.00 0.00 4.02
605 714 2.659016 CACTCCTTCGCAGCTCCA 59.341 61.111 0.00 0.00 0.00 3.86
606 715 2.817396 GCACTCCTTCGCAGCTCC 60.817 66.667 0.00 0.00 0.00 4.70
607 716 2.817396 GGCACTCCTTCGCAGCTC 60.817 66.667 0.00 0.00 0.00 4.09
608 717 4.400961 GGGCACTCCTTCGCAGCT 62.401 66.667 0.00 0.00 0.00 4.24
609 718 4.400961 AGGGCACTCCTTCGCAGC 62.401 66.667 0.00 0.00 45.47 5.25
610 719 2.435586 CAGGGCACTCCTTCGCAG 60.436 66.667 0.00 0.00 45.47 5.18
611 720 3.241530 ACAGGGCACTCCTTCGCA 61.242 61.111 0.00 0.00 45.47 5.10
612 721 2.743928 CACAGGGCACTCCTTCGC 60.744 66.667 0.00 0.00 45.47 4.70
613 722 2.743928 GCACAGGGCACTCCTTCG 60.744 66.667 0.00 0.00 45.47 3.79
614 723 1.673665 CAGCACAGGGCACTCCTTC 60.674 63.158 0.00 0.00 45.47 3.46
615 724 2.433446 CAGCACAGGGCACTCCTT 59.567 61.111 0.00 0.00 45.47 3.36
622 731 3.225798 TGGTTTGCAGCACAGGGC 61.226 61.111 0.00 0.00 45.30 5.19
627 736 2.050985 GCTCGTGGTTTGCAGCAC 60.051 61.111 0.00 0.00 46.27 4.40
628 737 2.203195 AGCTCGTGGTTTGCAGCA 60.203 55.556 0.00 0.00 34.08 4.41
629 738 2.253452 CAGCTCGTGGTTTGCAGC 59.747 61.111 0.00 0.00 0.00 5.25
630 739 1.280746 CACAGCTCGTGGTTTGCAG 59.719 57.895 8.03 0.00 42.34 4.41
631 740 3.419828 CACAGCTCGTGGTTTGCA 58.580 55.556 8.03 0.00 42.34 4.08
638 747 2.047844 CTCCACCCACAGCTCGTG 60.048 66.667 8.73 8.73 45.92 4.35
639 748 4.008933 GCTCCACCCACAGCTCGT 62.009 66.667 0.00 0.00 32.48 4.18
640 749 2.351244 TAGCTCCACCCACAGCTCG 61.351 63.158 0.00 0.00 42.60 5.03
641 750 1.219393 GTAGCTCCACCCACAGCTC 59.781 63.158 0.00 0.00 42.60 4.09
643 752 0.955919 GTTGTAGCTCCACCCACAGC 60.956 60.000 0.00 0.00 35.73 4.40
644 753 0.670546 CGTTGTAGCTCCACCCACAG 60.671 60.000 0.00 0.00 0.00 3.66
645 754 1.369692 CGTTGTAGCTCCACCCACA 59.630 57.895 0.00 0.00 0.00 4.17
646 755 2.033194 GCGTTGTAGCTCCACCCAC 61.033 63.158 0.00 0.00 0.00 4.61
647 756 2.214216 AGCGTTGTAGCTCCACCCA 61.214 57.895 0.00 0.00 45.67 4.51
648 757 2.663196 AGCGTTGTAGCTCCACCC 59.337 61.111 0.00 0.00 45.67 4.61
675 784 0.391130 TAGTCATTGCCGTGCTCCAC 60.391 55.000 0.00 0.00 0.00 4.02
676 785 0.541392 ATAGTCATTGCCGTGCTCCA 59.459 50.000 0.00 0.00 0.00 3.86
677 786 1.202580 AGATAGTCATTGCCGTGCTCC 60.203 52.381 0.00 0.00 0.00 4.70
678 787 1.863454 CAGATAGTCATTGCCGTGCTC 59.137 52.381 0.00 0.00 0.00 4.26
679 788 1.945387 CAGATAGTCATTGCCGTGCT 58.055 50.000 0.00 0.00 0.00 4.40
680 789 0.305922 GCAGATAGTCATTGCCGTGC 59.694 55.000 0.00 0.00 31.79 5.34
681 790 1.596260 CAGCAGATAGTCATTGCCGTG 59.404 52.381 0.00 0.00 38.58 4.94
682 791 1.945387 CAGCAGATAGTCATTGCCGT 58.055 50.000 0.00 0.00 38.58 5.68
683 792 0.585357 GCAGCAGATAGTCATTGCCG 59.415 55.000 0.00 0.00 38.58 5.69
684 793 0.585357 CGCAGCAGATAGTCATTGCC 59.415 55.000 0.00 0.00 38.58 4.52
685 794 0.585357 CCGCAGCAGATAGTCATTGC 59.415 55.000 0.00 0.00 38.09 3.56
686 795 1.202568 TCCCGCAGCAGATAGTCATTG 60.203 52.381 0.00 0.00 0.00 2.82
687 796 1.123077 TCCCGCAGCAGATAGTCATT 58.877 50.000 0.00 0.00 0.00 2.57
688 797 1.346062 ATCCCGCAGCAGATAGTCAT 58.654 50.000 0.00 0.00 0.00 3.06
689 798 1.123077 AATCCCGCAGCAGATAGTCA 58.877 50.000 0.00 0.00 0.00 3.41
690 799 1.506493 CAATCCCGCAGCAGATAGTC 58.494 55.000 0.00 0.00 0.00 2.59
691 800 0.107456 CCAATCCCGCAGCAGATAGT 59.893 55.000 0.00 0.00 0.00 2.12
692 801 0.394192 TCCAATCCCGCAGCAGATAG 59.606 55.000 0.00 0.00 0.00 2.08
693 802 0.106708 GTCCAATCCCGCAGCAGATA 59.893 55.000 0.00 0.00 0.00 1.98
694 803 1.153086 GTCCAATCCCGCAGCAGAT 60.153 57.895 0.00 0.00 0.00 2.90
695 804 2.268920 GTCCAATCCCGCAGCAGA 59.731 61.111 0.00 0.00 0.00 4.26
696 805 3.197790 CGTCCAATCCCGCAGCAG 61.198 66.667 0.00 0.00 0.00 4.24
701 810 3.259751 GTACGCGTCCAATCCCGC 61.260 66.667 18.63 0.00 46.10 6.13
702 811 1.588139 GAGTACGCGTCCAATCCCG 60.588 63.158 18.63 0.00 0.00 5.14
703 812 0.248949 GAGAGTACGCGTCCAATCCC 60.249 60.000 18.63 0.00 0.00 3.85
704 813 0.591741 CGAGAGTACGCGTCCAATCC 60.592 60.000 18.63 1.47 34.85 3.01
705 814 0.376152 TCGAGAGTACGCGTCCAATC 59.624 55.000 18.63 8.47 40.02 2.67
706 815 0.377554 CTCGAGAGTACGCGTCCAAT 59.622 55.000 18.63 0.00 40.02 3.16
707 816 1.792301 CTCGAGAGTACGCGTCCAA 59.208 57.895 18.63 0.00 40.02 3.53
708 817 2.747822 GCTCGAGAGTACGCGTCCA 61.748 63.158 18.63 0.00 40.02 4.02
709 818 2.023041 GCTCGAGAGTACGCGTCC 59.977 66.667 18.63 3.38 40.02 4.79
710 819 2.349869 CGCTCGAGAGTACGCGTC 60.350 66.667 18.63 7.94 40.02 5.19
711 820 3.862402 CCGCTCGAGAGTACGCGT 61.862 66.667 19.17 19.17 39.93 6.01
713 822 2.432841 CTAGCCGCTCGAGAGTACGC 62.433 65.000 18.75 12.17 0.00 4.42
714 823 1.152989 ACTAGCCGCTCGAGAGTACG 61.153 60.000 18.75 10.02 0.00 3.67
715 824 1.794116 CTACTAGCCGCTCGAGAGTAC 59.206 57.143 18.75 7.50 0.00 2.73
716 825 1.270199 CCTACTAGCCGCTCGAGAGTA 60.270 57.143 18.75 13.19 0.00 2.59
717 826 0.533308 CCTACTAGCCGCTCGAGAGT 60.533 60.000 18.75 12.71 0.00 3.24
718 827 1.231958 CCCTACTAGCCGCTCGAGAG 61.232 65.000 18.75 13.89 0.00 3.20
719 828 1.227883 CCCTACTAGCCGCTCGAGA 60.228 63.158 18.75 0.00 0.00 4.04
720 829 2.262303 CCCCTACTAGCCGCTCGAG 61.262 68.421 8.45 8.45 0.00 4.04
721 830 2.203308 CCCCTACTAGCCGCTCGA 60.203 66.667 0.00 0.00 0.00 4.04
722 831 2.203308 TCCCCTACTAGCCGCTCG 60.203 66.667 0.00 0.00 0.00 5.03
731 840 2.245143 GAGCACCTCCCTCCCCTACT 62.245 65.000 0.00 0.00 0.00 2.57
779 1008 2.094752 CGTACATGGGCCTTTTCTTTGG 60.095 50.000 4.53 0.00 0.00 3.28
780 1009 2.817258 TCGTACATGGGCCTTTTCTTTG 59.183 45.455 4.53 0.00 0.00 2.77
781 1010 3.149005 TCGTACATGGGCCTTTTCTTT 57.851 42.857 4.53 0.00 0.00 2.52
782 1011 2.871096 TCGTACATGGGCCTTTTCTT 57.129 45.000 4.53 0.00 0.00 2.52
783 1012 2.817844 GTTTCGTACATGGGCCTTTTCT 59.182 45.455 4.53 0.00 0.00 2.52
784 1013 2.094906 GGTTTCGTACATGGGCCTTTTC 60.095 50.000 4.53 0.00 0.00 2.29
785 1014 1.890489 GGTTTCGTACATGGGCCTTTT 59.110 47.619 4.53 0.00 0.00 2.27
786 1015 1.541379 GGTTTCGTACATGGGCCTTT 58.459 50.000 4.53 0.00 0.00 3.11
787 1016 0.675522 CGGTTTCGTACATGGGCCTT 60.676 55.000 4.53 0.00 0.00 4.35
788 1017 1.078708 CGGTTTCGTACATGGGCCT 60.079 57.895 4.53 0.00 0.00 5.19
789 1018 1.078988 TCGGTTTCGTACATGGGCC 60.079 57.895 0.00 0.00 37.69 5.80
790 1019 1.363885 GGTCGGTTTCGTACATGGGC 61.364 60.000 0.00 0.00 37.69 5.36
791 1020 1.079875 CGGTCGGTTTCGTACATGGG 61.080 60.000 0.00 0.00 37.69 4.00
792 1021 0.388907 ACGGTCGGTTTCGTACATGG 60.389 55.000 0.00 0.00 37.88 3.66
793 1022 0.986992 GACGGTCGGTTTCGTACATG 59.013 55.000 0.00 0.00 39.88 3.21
794 1023 0.597568 TGACGGTCGGTTTCGTACAT 59.402 50.000 3.34 0.00 39.88 2.29
795 1024 0.383590 TTGACGGTCGGTTTCGTACA 59.616 50.000 3.34 0.00 39.88 2.90
825 1054 3.414700 GCGGTCTTGCAGTCGGTG 61.415 66.667 0.00 0.00 34.15 4.94
832 1061 1.442520 GTACGTACGCGGTCTTGCA 60.443 57.895 16.72 0.00 43.45 4.08
833 1062 1.442520 TGTACGTACGCGGTCTTGC 60.443 57.895 20.18 0.00 43.45 4.01
834 1063 0.385849 TGTGTACGTACGCGGTCTTG 60.386 55.000 28.51 0.00 43.45 3.02
835 1064 0.110056 CTGTGTACGTACGCGGTCTT 60.110 55.000 31.02 0.00 43.45 3.01
836 1065 1.499056 CTGTGTACGTACGCGGTCT 59.501 57.895 31.02 0.00 43.45 3.85
837 1066 4.047030 CTGTGTACGTACGCGGTC 57.953 61.111 31.02 15.43 43.45 4.79
839 1068 1.512734 GGACTGTGTACGTACGCGG 60.513 63.158 35.16 35.16 45.91 6.46
840 1069 1.860423 CGGACTGTGTACGTACGCG 60.860 63.158 28.51 24.50 44.93 6.01
841 1070 1.512734 CCGGACTGTGTACGTACGC 60.513 63.158 28.07 28.07 38.33 4.42
842 1071 0.729116 ATCCGGACTGTGTACGTACG 59.271 55.000 20.18 15.01 38.33 3.67
843 1072 2.677836 TGTATCCGGACTGTGTACGTAC 59.322 50.000 18.90 18.90 38.33 3.67
844 1073 2.984562 TGTATCCGGACTGTGTACGTA 58.015 47.619 6.12 0.00 38.33 3.57
845 1074 1.825090 TGTATCCGGACTGTGTACGT 58.175 50.000 6.12 0.00 38.33 3.57
846 1075 2.095110 TGTTGTATCCGGACTGTGTACG 60.095 50.000 6.12 0.00 39.92 3.67
847 1076 3.248266 GTGTTGTATCCGGACTGTGTAC 58.752 50.000 6.12 5.65 0.00 2.90
848 1077 2.892215 TGTGTTGTATCCGGACTGTGTA 59.108 45.455 6.12 0.00 0.00 2.90
849 1078 1.689813 TGTGTTGTATCCGGACTGTGT 59.310 47.619 6.12 0.00 0.00 3.72
850 1079 2.029380 TCTGTGTTGTATCCGGACTGTG 60.029 50.000 6.12 0.00 0.00 3.66
861 1090 3.738982 CCTCATTGTGGTCTGTGTTGTA 58.261 45.455 0.00 0.00 0.00 2.41
878 1108 1.140252 GCCGTCCTATTTAAGGCCTCA 59.860 52.381 5.23 0.00 46.10 3.86
916 1146 3.684788 CGAGTATCTTTTTGGAGGGTGTG 59.315 47.826 0.00 0.00 0.00 3.82
923 1161 8.624367 TTTTATTGGTCGAGTATCTTTTTGGA 57.376 30.769 0.00 0.00 0.00 3.53
1117 1362 0.103208 ACGGAATCAGGCGACAGATC 59.897 55.000 0.00 0.00 35.23 2.75
1143 1388 2.025418 AAAGACAAGGGCGTACGCG 61.025 57.895 31.78 20.97 43.06 6.01
1218 1467 5.235850 TGAAAACTTGGATACTGGCTACA 57.764 39.130 0.00 0.00 37.61 2.74
1520 1785 2.730672 GCTGCGCGACGAACAATCT 61.731 57.895 12.10 0.00 0.00 2.40
2420 3277 4.286808 TCAAATCTCTCAGGGTCATTGACA 59.713 41.667 18.09 0.00 33.68 3.58
2661 4241 9.636879 CATAATAAAACACAACAATGATCACCA 57.363 29.630 0.00 0.00 0.00 4.17
2781 4373 6.966021 TCTACATGTTTGTTTTTGTCTAGGC 58.034 36.000 2.30 0.00 37.28 3.93
2841 4436 7.490000 ACCCTTCTTATAACTAGTTGTCATCG 58.510 38.462 18.56 2.30 0.00 3.84
2970 4588 9.855021 TTTAACTTGAAACTCTCCTTGAAAAAG 57.145 29.630 0.00 0.00 0.00 2.27
3074 4753 7.961326 TTACGTAAAAGTATTACTCCCTCCT 57.039 36.000 5.31 0.00 0.00 3.69
3134 4831 4.397420 CAACGGGGATGGATCATTCATAA 58.603 43.478 0.00 0.00 0.00 1.90
3265 5061 3.279434 CAAGGTATACAGGGGCAAGAAC 58.721 50.000 5.01 0.00 0.00 3.01
3267 5063 1.211949 GCAAGGTATACAGGGGCAAGA 59.788 52.381 5.01 0.00 0.00 3.02
3550 5489 8.306761 AGATTCAATAACATCACCTTTTTGGAC 58.693 33.333 0.00 0.00 39.71 4.02
3582 5521 2.608546 TGTGGTAGAAACACGTTTTCCG 59.391 45.455 15.14 0.00 41.64 4.30
3637 5593 8.458843 AGCCAACAACTATCACACAAATATAAC 58.541 33.333 0.00 0.00 0.00 1.89
3694 5737 8.892723 TCAGCATATTTTCGAACTGATAATTGT 58.107 29.630 9.18 0.00 31.73 2.71
3739 5782 5.886960 AATATGAACTTCAGCACCTGAAC 57.113 39.130 3.69 0.00 44.27 3.18
3933 5994 6.494893 TCTCCAAGTTCGGATAAATTTGTG 57.505 37.500 0.00 0.00 33.56 3.33
4206 6301 1.152694 ACAACCTGCTGCACACCAT 60.153 52.632 0.00 0.00 0.00 3.55
4248 6777 5.405935 AAGATGGATGCTTGGGTAAAAAC 57.594 39.130 0.00 0.00 0.00 2.43
4274 6804 5.126545 ACCCAAAAACTTCCAAGTCTACAAC 59.873 40.000 0.00 0.00 38.57 3.32
4421 6962 7.713073 TGTTTTGTATTCCCATCCAAAAAGAAC 59.287 33.333 0.00 0.00 38.20 3.01
4478 7020 5.543790 AGTGCCAAATAAACAATCCTTCCTT 59.456 36.000 0.00 0.00 0.00 3.36
4480 7022 5.047377 TGAGTGCCAAATAAACAATCCTTCC 60.047 40.000 0.00 0.00 0.00 3.46
4498 7040 7.005062 ACGAATTATAACACAGAATGAGTGC 57.995 36.000 0.00 0.00 39.59 4.40
4792 7348 3.066380 TCGTCTTAGCGTGTAGTGTACA 58.934 45.455 0.00 0.00 36.08 2.90
4803 7359 0.249073 CACATCCCCTCGTCTTAGCG 60.249 60.000 0.00 0.00 0.00 4.26
4812 7368 1.807814 AGGATACACCACATCCCCTC 58.192 55.000 0.00 0.00 42.63 4.30
4835 7391 4.669206 AGATCTGTATCAGCAGTTCAGG 57.331 45.455 0.00 0.00 37.55 3.86
4882 7438 9.065871 GTCTTGTTGTTGATATATTTTCAGTGC 57.934 33.333 0.00 0.00 0.00 4.40
4887 7443 9.065871 GCACTGTCTTGTTGTTGATATATTTTC 57.934 33.333 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.