CLUSTAL X (1.81) multiple sequence alignment input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 CAACGCCTCCTTCCTCCCTCTTTCAAGCAACCCCCACCTCTGGGCACACA chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 CGAGCTGCAATGCGCCCAGAGCGAATGCTGTAACGGTGATGGACGGGAGC chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 AGCGACCAACGGCGAGCATTGGCCTGCGACAGAGGCAATGCTAGAACCGC chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 TGTTGACCCCCGTGATGCAACCGGTGACAAGATAGCTTCAACCTCTAGAT chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 GAAAAAGCTTCAATCGGCTATAGAGAAAGCTTTAACCGGCACTGCCAATC chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 GGGGCAAATAAGCTACAACCGTTGACACAGAATGGTCCAATCTTAGATGA chr5A_291 ----------------------------------------TCTTAGATGA chr4A_291 ----------------------------------------TCTTAGATGA chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 AACAAGCTTCAACTAGACAGTAGACAAAACTTTAACCAGGCG-CTGCTCA chr5A_291 AACAAGCTTCAACTAGACAATAGACAAAACTTTAACCAGGCGACTGCTCA chr4A_291 AACAAGCTTCAACTAGACAATAGACAAAACTTTAACCAGACGACTGCTCA chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------S------------------------------ forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 AACGAAAAAGTTGTAACCATTGACAGAAAAGCTTCGACTGTATATGGAAA chr5A_291 AACGAAAAATTTGCAACCATTGACAAAAAAGTTTCAACCATATATGGAAA chr4A_291 AACGAAAAATTTGCAACCATTGACAAAAAAAATTCAACCATATATGGAAA chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs ---------S---S-----------S-----S---S--SS---------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 A----AGCTCGAACCGGGGAGAGAATAAGTTTTAACCAGACACGGT---- chr5A_291 GAGCTAGCTCTAACCGGCGAGAGAAAAGGTTTCAAACAGACATGGCGCAT chr4A_291 GAGCTAGCTCTAACCGGCGAGAGAAAAAGTTTCAAAG------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs S---------S------S-------S------S--S------S--S---- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -----------------------GCACCTAGAAAAGTTGCAACCGTCGAT chr5A_291 CCCTAAAAAAAAACAGACACGGCGCAACTAGAAAAGTTGCAACTGCCGAC chr4A_291 --------------AGACACGGCGCAACTAGAAAAGTTGCAACTGCCGAC chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs --------------------------S----------------S-S---S forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 AGAGAAAGCTTGCTA----------------------------------- chr5A_291 AAAGAAATCTTCAATTGTATATGGAAAAAGCTTCAATTGGCGACACAAAA chr4A_291 AAAGAAATCTTCAATTGTATATGGAAAAAGCTTCAATTGGCGACACAAAA chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -S-----S---SSSS----------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 --------------------------------------TACGTGTTTTTT chr5A_291 AACTTCAACTGGCGACCAGGGGAGGGAGACGAAGATGGTACGTGTTTTTT chr4A_291 AACTTCAACCGGCGACCAGGGGAGGGAGACGAAGATGGTACGTGTTTTTT chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 TTT---TGCTGGAATCAGTGACACGAAAAGCTGCAACCAGAGAGTCTATT chr5A_291 ATTTTTTGCTGGAATCAGTGACACGAAAAGCTGTAACCAGAGAGTCGATT chr4A_291 ATTTTTTGCTGGAATCAGTGACACGAAAAGCTGTAACCAGAGAGTCGATT chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs S--------------------------------S------------S--- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 TGCTGGGACCGGCGTCAGGCAGTGGCGAGCTGCGACGGTGGGGAGTTGCA chr5A_291 TGCTGGGACCGGCATCAGGCAGTGGCAAGCTGCGACGGTGGA-------- chr4A_291 TGCTGGGACCGGCATCAGGCAGTGGCAAGCTGCGACGGTGGA-------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------S------------S--------------SSSSSSSSS forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 CCAGCGACGGTGGTGGAGCTGCGAAGGAGTGCCCTGTGCTGCAAACCACG chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 AGCTGTGGGTGGAGCTACAACGCTGGCGCCCGCGTGGAGCACGGCAATGA chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 CTATCTGCTGCGGGATTGGACGCGTACTCTCGAGCGGCTAGTAGGGGAGG chr5A_291 -------------------------------GAGCGGCTGGTAGGTGAGG chr4A_291 -------------------------------GAGCGGCTGGTAGGTGAGG chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-----S---- forward_821 -TATCTGCTGCGGGATTGGAC----------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 GAGGTGCTCCACGCCGGAGAC----------------------------- chr5A_291 GAGGTGCTCCACACCGGAGACGTCGCTGGGATCGAGGGGG-GAGGATTGA chr4A_291 GAGGTGCTCCACACTGGAGACGTCGCTGGGATCAAGGGGGAGAGGATTGA chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs ------------S------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 GGGGTGGGCAATGGCGTCGAGCGAAGACGAACCAGCTTCAGTTCAATCTG chr4A_291 GGGGTGGGCAATGGCGTCGAGCGAAGACGAACCAGCTTCAGTTCAATCTG chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -----------------------------------------CGGCGCCTA chr5A_291 AAGCGTTCACGGAGGGCCAGATCGGACGCTCGCGCGGTGACCGGCGCCTA chr4A_291 AAGCGTTCACGGAGGGCCAGATCGGACGCTCGCGCGGTGACCGGCGCCTA chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 CCAGCCGCCAAAGAAAAGGCCCATGTACGAAACCGACCGTCAATCTGCCA chr5A_291 CCA---------------------GTACGAAACCGACCGTCAATCTGCCA chr4A_291 CCAGT---------------------ACGAAACCGACCGTCAATCTGCCA chr4A_793 CCAGT---------------------ACGAAACCGACCGTCAATCTGCCA chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs ----SSSSSSSSSSSSSSSSSSSS-------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 ACACACCGACTGCAAGACCGCGTACGTACACAGTCCGGATAC-AACACAG chr5A_291 ACAGACCGAC-------------------ACAGTCCGGAAACTAACACAG chr4A_291 ACAGACTGAC-------------------ACAGTCCGGAAACTAACACCG chr4A_793 ACAGACTGAC-------------------ACAGTCCGGAAACTAACACAG chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs ---S------SSSSSSSSSSSSSSSSSSS----------S---------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 ACCACAATGAGGCCTTAAATAGGACGGCGTTGGCGTCGACTGAGAC---- chr5A_291 ACCACAACGAGGCCTTAAATAGGACGGCGTTGGCGTCGACTGAGAGTCTG chr4A_291 ACCACAACGAGGCCTTAAATAGGACGGCGTTGGCGTCGACTGAGAGTCTG chr4A_793 ACCACAACGAGGCCTTAAATAGGACGGCGTTGGCGTCGACTGAGAGTCTG chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------S-------------------------------------S---- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 ----ACACCCTCCAAAAAGATACTCGACCAATAAAAGACAGAGTCGGCGG chr5A_291 AGATACACCCCCCAAAAAGATACTCGACCAATAAAAGACAGAGTCGGCGG chr4A_291 AGATACACCCCCCAAAAAGATACTCGACCAATAAAAGACAGAGTCGGCGG chr4A_793 AGATACACCCCCCAAAAAGATACTCGACCAATAAAAGACAGAGTCGGCGG chr5B_943 -----------------------------AATAAAAGACTCGGTCG--GG chr5A_957 -------------------------------------------TCGGCGG chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs ----------S--------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 --------------------------------------------ATGAGT chr5D_1_TraesCS5D01G005200 CGCGATTGCAAAGGGGATCGGCGATCAG-------AACAAGAAGATGAGT chr5A_291 CGCGATTGCAAAGGGGATCGGCGATCAG-------AACAAGAAGATGAGT chr4A_291 CGCGATTGCAAAGGGGATCGGCGATCAG-------AACAAGAAGATGAGT chr4A_793 CGCGATTGCAAAGGGGATCGGCGATCAG-------AACAAGAAGATGAGT chr5B_943 GGCGATTGCAAGA-GGATCGGCCATGCGAA----CAAGAAGATGATGAGT chr5A_957 CGCGATTGCAAGA-GGATCGGCGATGCGCGCGAGCAAGAAGATGTTGAGC chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 GCGGGTGTGGAGAAGCCAAACAACAAAAGGGCCACGGCGGCCGATCCGAC chr5D_1_TraesCS5D01G005200 GCGGGTGTGGAGAAGCCAAACAACAAAAGGGCCACGGCGGCCGATCCGAC chr5A_291 GCGGGTGTGGAGAAGCCAAACAACAAAAGGGCCACGGCGGCCGATCCGAC chr4A_291 GCGGGTGTGGAGAAGCCAAACAACAAAAGGGCCACGGCGGCCGATCCGAC chr4A_793 GCGGGTGTGGAGAAGCCAAACAACAAAAGGGCCACGGCGGCCGATCCGAC chr5B_943 GCGGGTGTGAAGAAGCCCAACAACAAAAGGGCCACGGCGGCCGATCCGAC chr5A_957 GCGGGCGTGGAGAAGCCCAATAACAAAAGGGCCACGGCGGCCGATCCGAC chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 CAGCCGAGGCGATGCCGACGCCAAGAGGACGAAAAGGAATCCGGGGAGCG chr5D_1_TraesCS5D01G005200 CAGCCGAGGCGATGCCGACGCCAAGAGGACGAAAAGGAATCCGGGGAGCG chr5A_291 CAGCCGAGGCGATGCCGACGCCAAGAGGACGAAAAGGAATCTGGGGAGCG chr4A_291 CAGCCGAGGCGATGCCGACGCCAAGAGGACGAAAAGGAATCTGGGGAGCG chr4A_793 CAGCCGAGGCGATGCCGACGCCAAGAGGACGAAAAGGAATCTGGGGAGCG chr5B_943 CAGCCGAGGCAATGCCGACGCGAAGAAGAGGAAGAGGGATCCGGAGAGCC chr5A_957 CAGCCGAGGCGATACCAACGCGAAGAAGACGAAGAGGGATCCG------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 ACGGGGAAGATGATCTGTCGCCTGATTCCGTCGACCACGCGTACGCCCTT chr5D_1_TraesCS5D01G005200 ACGGGGAAGATGATCTGTCGCCTGATTCCGTCGACCACGCGTACGCCCTT chr5A_291 ACGGGGAAGATACTCTGTCGCCTGGTTCCGTCGACCATGCGTACGCCCTT chr4A_291 ACGGGGAAGATACTCTGTCGCCTGGTTCCGTCGACCATGCGTACGCCCTT chr4A_793 ACGGGGAAGATACTCTGTCGCCTGGTTCCGTCGACCATGCGTACGCCCTT chr5B_943 ACGGAGAAGAGAATCTG------------GTCGACCGTGCTTACGCCCT- chr5A_957 -----------------TCGCCTGAT-----------TGCGTACGCCCTC chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -----------S-------------------------S------------ forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 GTCTTTGCCAAGATTGCACAAGACGAAATAGACCAAGAGTCAGG----TA chr5D_1_TraesCS5D01G005200 GTCTTTGCCAAGATTGCACAAGACGAAATAGACCAAGAGTCAGG----TA chr5A_291 GTCTTTGCCAAGATTGCACAAGACGAAATAGACCAAGAGTCAGGTATATA chr4A_291 GTCTTTGCCAAGATTGCACAAGACGAAATAGACCAAGAGTCGGGTATATA chr4A_793 GTCTTTGCCAAGATTGCACAAGACGAAATAGACCAAGAGTCGGGTATATA chr5B_943 GTCTTTGCCAAGATTGCACAAGACGAGATCGACAGAGAGTCAGGTCTG-- chr5A_957 GTCTTTGCCAAGATTGCACAAGACGAGATCGACAAAGAGTCAGGTC---- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 TATGATTGCGCTATCCTGTAGCCAGTATCCAAGTTTTCAACCGAGAATTC chr5D_1_TraesCS5D01G005200 TATGATTGCGCTATCCTGTAGCCAGTATCCAAGTTTTCAACCGAGAATTC chr5A_291 TATGATTGCGCCATCCCGTAGCCACTATCCAAGTTTTCAACCGAGAATTC chr4A_291 TATGATTGCGCCATCCCGTAGCCACTATCCAAGTTTTCAACCGAGAAGTC chr4A_793 TATGATTGCGCCATCCCGTAGCCACTATCCAAGTTTTCAACCGAGAATTC chr5B_943 ------------ATCCCGTGGCCACTATCCAAATTTTCAATCGAATTCCT chr5A_957 --TGATTGCGCTATCCCGTAGCCACCATCCAAGTTTTCATTCGAATTCCT chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs ----------------S-------S------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -----TTGCGCTATCCTGTAGCCAG------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 CTAAATAATTATACAAATTGTCTTCCTCTGCTCG---------TG----- chr5D_1_TraesCS5D01G005200 CTAAATAATTATACAAATTGTCTTCCTCTGCTCG---------TG----- chr5A_291 CTAAATAATTATACAAATTGTCTTCCTCTTCTCG---------TGTATGA chr4A_291 CTAAATAATTATACAAATTGTCTTCCTCTGCTCG---------TG----- chr4A_793 CTAAATAATTATACAAATTGTCTTCCTCTCCTCG---------TG----- chr5B_943 AATAATGATGGTACAAATTGTCTTCGTGTGCTCATCATCAG--------- chr5A_957 AA--ATAATGGTACAGACCGTCTTCATCTGCTCATGTGTGATCTG----- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 TATGATCTGATCGATATCTGTTTATGTTC--CTGCCGCCTGTAGCTCCCC chr5D_1_TraesCS5D01G005200 TATGATCTGATCGATATCTGTTTATGTTC--CTGCCGCCTGTAGCTCCCC chr5A_291 TATGATCTGATCGATATCTGTTTATGTTC--CTGCCGCCTGTAGCTCCCC chr4A_291 TATGATCTGATCGATATCTGTTAATGTTC--CTGCAGCCTGTAGCTCCCA chr4A_793 TATGATCTGATCGATATCTGTTAATGTTC--CTGCCGCCTGTAGCTCCCA chr5B_943 --TGATCTGATCGACATATGTTGA-----------TGCGTGTAGCTCCCC chr5A_957 AATCATCTGACCGATATATGTTTATGTTG--CTGCCGCCTGTAGCTCCCC chr3B_1299 ----------TCGATATATATTTATGTTCTACTTCTGCCTGTAGCTCCCC chr5B_1301 ------------GATATGTATTTATGTTCTACTTCTGCCTGTAGCTCCCC chr5A_1302 -------------ATATATATTTATGTTCTACTTCTGCCCGTAGCTCCCC chr5A_1302 -------------ATATATATTTATGTTCTACTTCTGCCTGTAGCTCCCC chr5A_1302 -------------ATATATATTTATGTTCTACTTCTGCCTGTAGCTCCCC chr5D_1323 ------------------------------------GCCTGTAGCTCCCC chr5B_1324 -------------------------------------CCTGTAGCTCCCC chr5B_1324 -------------------------------------CCTGTAGCTCCCC chr5B_1328 -----------------------------------------TAGCTCCCC chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 GCCCTGTGCAAATTCCTACAATCGCTTACTTCAAACCTCCGACCTTGTTT chr5D_1_TraesCS5D01G005200 GCCCTGTGCAAATTCCTACAATCGCTTACTTCAAACCTCCGACCTTGTTT chr5A_291 GCCCTGTGCAAATTCCTACAATCGCTTACTTCAAACCTCCGACCTTGTTT chr4A_291 GCCCTGTGCAAATTCCTACAATCGCTTACTTCAAACCTCCGACCTTGTTT chr4A_793 GCCCAGTGCAAATTCCTACAATCGCTTACTTCAAACCTCCGACCTTGTTT chr5B_943 GCCCTGTGCAAATTCCTACCATCGCTTACTTCAAACCTCCGACCTTGTTT chr5A_957 GCCCTGTGCAAATTCCTACCATCGCTTACTTCAAACCTCCCACCTTGTTT chr3B_1299 GCCCTGTGAAAATTGCCACGCTCAACTACTACAAACCTGCCACCAGGTTT chr5B_1301 GCCCTGTGAAAATTGCCACGCTCGACTACTACAAACCTGCCACCAGGTTT chr5A_1302 GCCCTGTGAAAATTTCTCCGCTCGACTACTACAAACCTGCCACCAGGTTT chr5A_1302 GCCCTGTGAAAATTGCTACGCTCGACTACTACAAACCTGCCACCAGGTTT chr5A_1302 GCCCTGTGAAAATTGCTACGCTCGACTACTACAAACCTGCCACCAGGTTT chr5D_1323 GCCCTGTGAAAATTGCCACGCTCGACTACTACAAACCTGCCACCAGGTTT chr5B_1324 GCCCTGTGAAAATTGCTACGCTCGACTACTACAAACCTCCCACCAGGTTT chr5B_1324 GCCCTGTGAAAATTGCTACGCTCGACTACTACAAACCTCCCACCAGGTTT chr5B_1328 CGCCTGTGAAAATCCCTACGCTCGACTACTTCAAACCCCCGACCAGGTTT chr5A_1369 --------------------------------AAACCTGCCACCAGGTTT chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 CACACTGATGAGCTCTTTTCTGTCCGTCGATCTGGAACAAAGGCCGTGCT chr5D_1_TraesCS5D01G005200 CACACTGATGAGCTCTTTTCTGTCCGTCGATCTGGAACAAAGGCCGTGCT chr5A_291 CACACTGATGAGCTCTTTTCTGTCCGTCGGTCTGGAACAAAGGCCGTGCT chr4A_291 CACACTGATGAGCTCTTTTCTATCCGTCGATCTGGAACAAAGGCCGTGCT chr4A_793 CACACTGATGAGCTCTTTTCTATCCGTCGATCTGGAACAAAGGCCGTGCT chr5B_943 CACTCTGATGAGCTCTTTTCTGTCCGTCGATCTGGAAAAAAGGCCGTCCT chr5A_957 CACACCGACGAGCTCCTTTCCGTCCGTCAATCTGGAAGAAAGGCCGTGCT chr3B_1299 CACACCATCGAGCTTTTCCCCGTCCGTCGATCCGGAAGCAAGGCCGTGCT chr5B_1301 CACACCGTCGAGCTTTTCCCCGTCCGTCGATCCGGAAGCAAGGCCGTGCT chr5A_1302 CACACCATCGAGCTTTTCCCCGTCTTTCGATCCGGAAGCAAGGCTGTGCT chr5A_1302 CACACCATCGAGCTTTTCCCCGTCTTTCGATCCGGAAGCAAGGCTGTGCT chr5A_1302 CACACCATCGAGCTTTTCCCCGTCTTTCGATCCGGAAGCAAGGCTGTGCT chr5D_1323 CACACCGTCGAGCTTTTCCCCGTCCGTCGATCCGGAAGCAAGGCCGTGCT chr5B_1324 CACACCGTCGAGCTTTTCCCCGTTTGTCGATCCGGAAGCAAGGCAGTACT chr5B_1324 CACACCGTTGGGCTTTTCCCCGTTTGTCGATCCGGAAGCAAGGCGGTACT chr5B_1328 CACACCGCCGAGGTCTTTGCCGTCCGTGATTC---AAGCGAGGCCGCGCT chr5A_1369 CACACCATCGAGCTTTTCCCCGTCTTTCGATCCGGAAGCAAGGCTGTGCT chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 CTCGGCAGCCAAATTTCTTCTAGGGGTTTCATCCTCTCTCGGTACGTGCA chr5D_1_TraesCS5D01G005200 CTCGGCAGCCAAATTTCTTCTAGGGGTTTCATCCTCTCTCGGTACGTGCA chr5A_291 CTCGGCAGCCAAATTTCTTCTAGGGGTTTCATCCTCTCTCGGTACGTGCA chr4A_291 CTCGGCAGCCAAATTTCTTCTAGGGGTTTCATCCTCTCTCGGTACGTGCA chr4A_793 CTCGGCAGCCAAATTTCTTCTAGGGGTTTCATCCTCTCTCGGTACGTGCA chr5B_943 CTCGGCTGCCAAATTTCTGTTAGGGGTTTCATCCTCTCTTGGTACGTGCA chr5A_957 CTCGGCTGCCAAATTTCTTCTAGGGGTCTCATCCTCTCTTGGTACGTT-- chr3B_1299 CCTCGCTGCGAAATTTCTTCTAGGGATTTCATCCTCTCTCGGTACTTTTA chr5B_1301 CCTCGCTGCGAAATTTCTTCTAGGGATTTCATCCTTTCTCGGTACTTTTA chr5A_1302 CCTCGCTGCGAAATTTCTTCTAGGGATTTCATCCTCTTGCGGTACTTTTA chr5A_1302 CCTCGCTGCGAAATTTCTTCTAGGGATTTCATCCTCTCGTGGTACTTTTA chr5A_1302 CCTCGCTGCGAAATTTCTTCTAGGGATTTCATCCTCTCGTGGTACTTTTA chr5D_1323 CCTCGCTGCGAAATTTCTTCTAGGGATTCCATCCTCTCTCGGTACTTTTA chr5B_1324 CCGCGCCGCAAAATTTCTTCTAGGGGTTTCATCCTCTCTCAGTACTTTTA chr5B_1324 CCACGCCGCTAAATTTCTTCTAGGGGTTTCATCCTCTCTCGGTACTTTTA chr5B_1328 CTCTGCTGCCAAATTTCTCCTAGGGGTTTCATCCTCTCTTGGTATGTAG- chr5A_1369 CCTCGCTGCGAAATTTCTTCTAGGGATTTCATCCTCTCGCGGTACTTTTA chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 TATGTGGTCTTGTACTACGTACCCTCCATGTTTCA--------------- chr5D_1_TraesCS5D01G005200 TATGTGGTCTTGTACTACGTACCCTCCATGTTTCA--------------- chr5A_291 TATGTGGTCTTGTACTACGTACCCTCCATGTTTCG--------------- chr4A_291 TATGTGGTCTTGTACTACGTACCCTCCATGTTTCG--------------- chr4A_793 TATGTGGTCTTGTACTACGTACCCTCCATGTTTCG--------------- chr5B_943 TATGTAGCCTTGTACCCTCTAATCCTCTGTAT--GATTCGGA-------T chr5A_957 --------CTAATCCTCTGTA----------T--GTTTCGGA-------T chr3B_1299 TATGTATCCTTGTACCCTCTA----------T--GATTTGGA-------T chr5B_1301 TATGTATCCTTGTACCCTCTA----------T--GATTTGGA-------T chr5A_1302 TATGTATCCTTGTACACTCTA----------T--GATTTGGA-------T chr5A_1302 TATGTATCCTTGTACACTCTA----------T--GATTTGGA-------T chr5A_1302 TATGTATCCTTGTACACTCTA----------T--GATTTGGA-------T chr5D_1323 TATGTATCCTTGTGCCCTCTA----------T--GATTTGGA-------T chr5B_1324 TGTGTAACCTTGCACCCTCTA----------TATGATTTGGATTATTTGT chr5B_1324 TGTGTAACCTTGCACCCTCTA----------TATGATTTGGATTATTTGT chr5B_1328 TATATGTATATGCAGCCTCTC----------T--GTTTTGAA-------T chr5A_1369 TATGTATCCTTGTACACTCTA----------T--GATTTGGA-------T chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs ----------------------------------S--------------- forward_821 -------------------------------------------------- reverse_1785 ----------------------------------AGATTGTTCGTCGCGC forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------ACTACGTACCCTCCATGTTTCA--------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -----G-------ATTGTTCGTCG--CG---------CAGCTTGATCG-- chr5D_1_TraesCS5D01G005200 -----G-------ATTGTTCGTCG--CG---------CAGCTTGATCG-- chr5A_291 -----G-------ATTGTTCGTCG--CG---------CAGCTTGATCG-- chr4A_291 -----G-------ATTGTTCGTCG--CG---------CAGCTTGATCG-- chr4A_793 -----G-------ATTGTTCGTCA--CG---------CAGCTTGATCG-- chr5B_943 TTTTTT-------ATCCATCGCCGCACG---------CAACTTAACATAT chr5A_957 TTTTTG-------ATCCATCGCCGCACG---------CAACTTAACGTAT chr3B_1299 TAGTTG-------ATCCGTCGTCT--CG---------CAACTTAAC---- chr5B_1301 TAGTTG-------ATCCGTCGTCT--CG---------CAACTTAAC---- chr5A_1302 TAGTTG-------ATCCGTCGTCG--CG---------CAACTTAAC---- chr5A_1302 TAGTTG-------ATCCGTCGTCG--CG---------CAACTTAAC---- chr5A_1302 TAGTTG-------ATCCGTCGTCG--CG---------CAACTTAAC---- chr5D_1323 TAGTTG-------ATCCGTCGTCT--CG---------CAACTTAAC---- chr5B_1324 TATTTG-------ATTCGTCGTCGTGCGTGCAACTTACAACATACA---- chr5B_1324 TATTTG-------ATTCGTCGTCGTGTGTGCAACTTACAACATACA---- chr5B_1328 TGACGATTGATCCATCGTCCGTCG--CG---------CAACTTAAAAA-- chr5A_1369 TAGTTG-------ATCCGTCGTCG--CG---------CAACTTAAC---- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 AGC----------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -TATATCTTGTGCTTGAATCACACAGATGGTGAACCGCTAAGACGGTGCT chr5D_1_TraesCS5D01G005200 -TATATCTTGTGCTTGAATCACACAGATGGTGAACCGCTAAGACGGTGCT chr5A_291 -TATATCTTGTGCTTGAATCACACAGATGGTGAACCGCTAAGACGGTGCT chr4A_291 -TATATCTTGTGCTTGAATCACACAGATGGTGAACCACTAAGACGGTGCT chr4A_793 -TATATCTTGTGCTTGAATCACACAGATGGTGAACCACTAAGACGGTGCT chr5B_943 ATATTAATTGTGTTTGAATCACAAAGATGGTGAACCGCTAAGACGGTGCT chr5A_957 ATATTAATTGTGCTTGAATCACACAGATGGTGAGCCGCTAAGACGGTGCT chr3B_1299 ATATATATTGTGTTTGAATCAGACAGATGGTGAACCGCTCAGACGGTGCT chr5B_1301 ACATATATTGTGTTTGAATCACACAGATGGTGAACCGCTCAGACGGTGCT chr5A_1302 ATATATATTGTGTTTGAATCACACAGATGGTGAACCGCTAAGAAGGTGCT chr5A_1302 ATATATATTGTGTTTGAATCACACAGATGGTGAACCGCTAAGAAGGTGCT chr5A_1302 ATATATATTGTGTTTGAATCACACAGATGGTGAACCGCTAAGAAGGTGCT chr5D_1323 ATATATATTGTGTTTGAATCACACAGATGGTGAACCGCTCAGACGGTGCT chr5B_1324 ATATATATTGTGCTTGAATCACACAGATGGTAGGCCGCTAAGATGGTGCT chr5B_1324 ATATATATTGTGCTTGAATCACATAGATGGTAGGCCGCTAAGACGGTGCT chr5B_1328 -TGTATGTATC----GATTCACGCAGATGGTGAACCGCTGAGACGCTGCT chr5A_1369 ATATATATTTTGTTTGAATCACACAGATGGTGAACCGCTAAGAAGGTGCT chr4A_1586 ----------------------------------------AGACGGTGCT chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 CTGGCTTCTGGATTGATTGGGATGAGGAGAGGAAAACCGGCCTTGTTCTG chr5D_1_TraesCS5D01G005200 CTGGCTTCTGGATTGATTGGGATGAGGAGAGGAAAACCGGCCTTGTTCTG chr5A_291 CTGGCTTCTGGATTGATTGGGATGAGGAGAGCAAAACCGGCCTTGTTCTG chr4A_291 CTGGCTTCTGGATTGATTGGGATGAGGAGAGCAAAACCGGCCTTGTTCTG chr4A_793 CTGGCTTCTAGATTGATTGGGATGAGGAGAGCAAAACCGGCCTTGTTCTC chr5B_943 CTGGCCTCTGGGTTGATTGGGATGAGGAGAGCAAAACCGGCCTTGTTCTG chr5A_957 CTGGCTTCTGGGTTGATTGGGATGAGGAGAGCAGAACCGGCCTTGTTCTG chr3B_1299 CTGGCTTCTGGGTCGATTGGGATGAGGAGAAGAAAACTGGCCTTGTTTTG chr5B_1301 CTGGCTTCTGGGTCGATTGGGATGAGGAGAAGAAAACTGGCCTTGTTTTG chr5A_1302 CTGGCTTCTGGGTCGATTGGGATGAGGAGAAGAAAACTGGCCTTGTTTTG chr5A_1302 CTGGCTTCTGGGTCGATTGGGATGAGGAGAAGAAAACTGGCCTTGTTTTG chr5A_1302 CTGGCTTCTGGGTCGATTGGGATGAGGAGAAGAAAACTGGCCTTGTTTTG chr5D_1323 CTGGCTTCTGGGTCGATTGGGTTGAGGAGAAGAAAACTGGCCTTGTTTTG chr5B_1324 CTGGCCTCTGGGTCGATTGGGATGTGTAGAAGAAAACTGGCCTTGTTTTG chr5B_1324 CTGGCCTCTGGGTCGATTGGGATGTGTAGAAGAAAACTGGCCTTGTTTTG chr5B_1328 CCGGCTTCTGGGTCGATTGGGATGAGGACAAGAAAACCGGCCTTGTTTTG chr5A_1369 CTGGCTTCTGGGTCGATTGGGATGAGGAGAAGAAAACTGGCCTTGTTTTG chr4A_1586 CCGGCTTCTGGGTCGATTGGGACGAGGACAAGAAAACCGGCCTTGTTTTG chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 ACAACCGCGCGGCTGATTCGCACAAAGGATGCTCCTGTCAGCGTCTGGTC chr5D_1_TraesCS5D01G005200 ACAACCGCGCGGCTGATTCGCACAAAGGATGCTCCTGTCAGCGTCTGGTC chr5A_291 ACAACCGCGCGGCTGATTCGCACAAAGGATGCTCCTGTCAGCGTCTGGTC chr4A_291 ACAACCGCGTGGCTGATTCGCGCAAAGGATGCTCCTGTCAGCGTCTGGTC chr4A_793 ACAACCGCGTGGCTGATTCGCACAAAGGATGCTCCTGTCAGTGTCTGGTC chr5B_943 ACAACCGCGCGGCTGATTCGCACAAAGGATGCTCCTGTCAGCGTCTGGTC chr5A_957 ACAACCGCGCGGCTGATTCGCACAAAGGATGCTCCTGTCAGCGTCTGGTC chr3B_1299 ACAACTGCGCGGCTGATTCGCATAAAGGATGCTCCTTACAGTGTCTGGTC chr5B_1301 ACAACTGCGCGGCTGATTCGCACAAAGGATGCTCCTTACAGTGTCTGGTC chr5A_1302 ACAACTGCGCGGCTGATTCGCACAAAGGATGCTCCTTACAGTGTCTGGTC chr5A_1302 ACAACTGCGCGGCTGATTCGCACAAAGGATGCTCCTTACAGTGTCTGGTC chr5A_1302 ACAACTGCGCGGCTGATTCGCACAAAGGATGCTCCTTACAGTGTCTGGTC chr5D_1323 ACAACTGCGCGGCTGATTCGCACAAAGGATGCTCCTTACAGTGTCTGGTC chr5B_1324 ACAACTGCGCAGCTGATTCGCACAAAGGATGCTCCTTACAGTGTCTGGTC chr5B_1324 ACAACTGCGCGGCTGATTCGCACAAAGGATGCTCCTTACAGTGTCTGGTC chr5B_1328 ACAACCGCGCGTCTGATTCGCACAAAGGACTCTCCTGACAGCAGCTGGTC chr5A_1369 ACAACTGCGCGGCTGATTCGCA---AGGATGCTCCTTACAGTGTCTGGTC chr4A_1586 ACAACTGCGTGGCTGATTCGCACAAAGGATGCTCCTTTCAGCGTCTGGTC chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 AGGCGGTGAAGAGTATGCTACAAACGCTGATGTGAGTCAA----TGTGTT chr5D_1_TraesCS5D01G005200 AGGCGGTGAAGAGTATGCTACAAACGCTGATGTGAGTCAA----TGTGTT chr5A_291 AGGCGGTGAAGAGTATGCTACAAACGCTGATGTGAGTCAA----TGTGTT chr4A_291 AGGCGGTGAAGAGTATGCTACAAACGCTGATGTGAGTCAA----TGTGTT chr4A_793 AGGCGGTGAAGAGTATGCTACAAACGCTGATGTGAGTCAA----TGTGTT chr5B_943 AGGCGGTGAAGAGTATGCTACAAATGCTCATGTGAGTCAA----TGTGCT chr5A_957 AGGCGGTGAAGAGT------------------------------------ chr3B_1299 AGGCGGTGAAGAGTATGCTACAGATGCTGATGTGAGTCAA----TGTGCT chr5B_1301 AGGCGGTGAAGAGTATGCTACAGATGCTGATGTGAGTCAA----TGTGCT chr5A_1302 AGGCGGTGAAGAGTATGCTACAGATGCTGATGTGAGTCAA----TGTGCT chr5A_1302 AGGCGGTGAAGAGTATGCTACAGATGCTGATGTGAGTCAA----TGTGCT chr5A_1302 AGGCGGTGAAGAGTATGCTACAGATGCTGATGTGAGTCAA----TGTGCT chr5D_1323 AGGCGGTGAAGAGTATGCTACAGATGCTGATGTGAGTCAA----TGTGCT chr5B_1324 AGGGGGTGAAGAGTACGCTACAGCTGCTGATGTGAGTCAA----TGTGCT chr5B_1324 AGGGGGTGAAGAGTATGCTACAGATGCTGATGTGAGTCAA----TGTGCT chr5B_1328 AGGTGGCGAAGAGTATGCTCCTCGTGCTGATGTGAGTTAAATGTTGTGTT chr5A_1369 AGGCGGTGAAGAGTATGCTACAGATGCTGATGTGAGTCAA----TGTGCT chr4A_1586 AGGCGGCGAAGAGTATGCCCCTCATGCTGATGTGAGTCATATGTAGTGTT chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 TCTTCTATTAATGTACTT-------------------------------- chr5D_1_TraesCS5D01G005200 TCTTCTATTAATGTACTT-------------------------------- chr5A_291 TCTTCTATTAATGTACTT-------------------------------- chr4A_291 TCTTCTATTAATGTA-TT-------------------------------- chr4A_793 TCTTCTATTAATGTA-TT-------------------------------- chr5B_943 TCTTCTATTAATTTA-TATATATATCCTTTTTTTGCGGGGAAATTTTTAT chr5A_957 -------------------------------------------------- chr3B_1299 TCTTCTATTAATTTC-TGTATATG-------------------------- chr5B_1301 TCTTCTATTAATTTC-TGTACATG-------------------------- chr5A_1302 TTTTCTATTAATTTC-TATATATG-------------------------- chr5A_1302 TTTTCTATTAATTTC-TATATATG-------------------------- chr5A_1302 TTTTCTATTAATTTC-TATATATG-------------------------- chr5D_1323 TCTTCTATTAATTTC-TGTATATG-------------------------- chr5B_1324 TCTTCTATTAATTTC-TGTATATG-------------------------- chr5B_1324 TCTTCTATTAATTTC-TGTATATG-------------------------- chr5B_1328 TCTTCTTAAAAATTT-GTATCATT-------------------------- chr5A_1369 TTTTCTATTAATTTC-TATATATG-------------------------- chr4A_1586 TCTTCTGAAAATTTC-TACCCTTG-------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 ----------------TCTT-------TGGTTCCATCGT-----AAATAA chr5D_1_TraesCS5D01G005200 ----------------TCTT-------TGGTTCCATCGT-----AAATAA chr5A_291 ----------------TCTTTTCAAACTGGTTCCATCGG-----ATATAA chr4A_291 ----------------TCTTTTCAAACTGGTTCCGTCGT-----AAATAA chr4A_793 ----------------TCTTTTCAAACTGGTTCCGTCGT-----AAATAA chr5B_943 ATATATACATGTACTATCTTTTCCAGCTGGTTCCATCTC-----AAATAA chr5A_957 -------------------------------------------------- chr3B_1299 -------CATGTACTATCTTTTACAGCTGGTTCCATCTC-----AAATAA chr5B_1301 -------CATGTACTATCTTTTACAGCTGGTTCCATCTC-----AAATAA chr5A_1302 -------CATGTACTATCTTTTACAGCTGGTTCCATCTA-----AAAAAA chr5A_1302 -------CATGTACTATCTTTTACAGCTGGTTCCATCTA-----AAAAAA chr5A_1302 -------CATGTACTATCTTTTACAGCTGGTTCCATCTA-----AAAAAA chr5D_1323 -------CATGTACTATCTTTTACAGCTGGTTCCATCTC-----AAATAA chr5B_1324 -------CATGTGCTATCTTTTACAGCTGGTTCCATCTC-----AAATAA chr5B_1324 -------CATGTACTATCTTTTACAGCTGGTTCCATCTC-----AAATAA chr5B_1328 -------CTTTTCCAGC-----CCAGCCGCTTCCACCCCCAAATAAATAA chr5A_1369 -------CATGTACTATCTTTTACAGCTGGTTCCATCTA-----AAAAAA chr4A_1586 -------TATGAT---TCTTTTCCAGCCGCTCCCACCCC-----A----- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 ATAAATTAATCTCCGGTGTAAATCTAACTAGTTGCAATTCACATG--TTT chr5D_1_TraesCS5D01G005200 ATAAATTAATCTCCGGTGTAAATCTAACTAGTTGCAATTCACATG--TTT chr5A_291 ATAAATTAATCTCCGGTGTAAATCTAACTAGTTGCAATTCACAAG--TTT chr4A_291 ATAAATTAATCTCCGGTGTAAATCTAACTAGTTGCAATTCACATGTTTTT chr4A_793 ATAAATTAATCTCCGGTGTAAATCTAACTAGTTGCAATTCACATGT-TTT chr5B_943 ATAAATTATTCGCTG--GTAAATCTAACTAGCTGGAATTCACATGC-TTT chr5A_957 -------------------------------------------------- chr3B_1299 ATAAAATAATCTTGGTGTA------------TTGCAATTCACATAT-TTT chr5B_1301 ATAAAATAATCTTGGTGTA------------TTGCAATTCACATAT-TTT chr5A_1302 TGATAATCT------TGTA------------TTGCAATTCACATGT-TTT chr5A_1302 TGATAATCT------TGTA------------TTGCAATTCACATGT-TTT chr5A_1302 TGATAATCT------TGTA------------TTGCAATTCACATGT-TTT chr5D_1323 ATAAAATAATCTTGGTGTA------------TTGCAATTCACATAT-TTT chr5B_1324 ATAAAATAATCTCGGTGTA------------TTGCAATTCACATAT-TTT chr5B_1324 ATAAAATAATCTCGGTGTA------------TTGCAATTCACATA--TTT chr5B_1328 CTAAATAAATCTCCGGTGTAAATCTAACTAGTTGCAATTCTCTTGT-TTT chr5A_1369 TGATAATCT------TGTA------------TTGCAATTCACATGT-TTT chr4A_1586 --AAATAAATCTCCGGTGTAAATCTAACTAGTTGCAATTCACTTGT-TTT chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 TT---T-------------------------------------------- chr5D_1_TraesCS5D01G005200 TT---T-------------------------------------------- chr5A_291 TT---T-------------------------------------------- chr4A_291 TT---T-------------------------------------------- chr4A_793 TT---T-------------------------------------------- chr5B_943 CT---TG------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 TTCTATG------------------------------------------- chr5B_1301 TTCTATG------------------------------------------- chr5A_1302 TTGTGTG------------------------------------------- chr5A_1302 TTGTGTG------------------------------------------- chr5A_1302 TTGTGTG------------------------------------------- chr5D_1323 TTCTATG------------------------------------------- chr5B_1324 TT-TGTG------------------------------------------- chr5B_1324 TTGTGTG------------------------------------------- chr5B_1328 TCTTGTG------------------------------------------- chr5A_1369 TTGTGTG------------------------------------------- chr4A_1586 TT---TTGTGTGTGTGTGTGTGCTACTATTAGCCTTTCCTAGTAACAAAA chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 TGAAAGCGGCACATGTGTTTGCTTACTAAGCATTGTTCAAAAATCATATA chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 TTAATCTGTTCCATAACTTTTCTTCAGTTCACTGTTCATTTGCAAAGGAC chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------CTTG-----CTATTGGCCTTTTC---AAATA chr5D_1_TraesCS5D01G005200 -------------------CTTG-----CTATTGGCCTTTTC---AAATA chr5A_291 -------------------CTTG-----CTATTGGCCTTTTC---AAATA chr4A_291 -------------------CTTG-----CTATTGGCCTTTTC---AAATA chr4A_793 -------------------CTTG-----CTATTGGCCTTTTC---AAATA chr5B_943 ---------------------TG-----CTATTGGCCTTTTC---AAATA chr5A_957 -------------------------------------------------- chr3B_1299 ---------------------TG-----CTATTGGCCTTTTC---TAATA chr5B_1301 ---------------------TG-----CTATTGGCCTTTTC---TAATA chr5A_1302 ---------------------TG-----CTATTGGCCTTTTC---TAATA chr5A_1302 ---------------------TG-----CTATTGGCCTTTTC---TAATA chr5A_1302 ---------------------TG-----CTATTGGCCTTTTC---TAATA chr5D_1323 ---------------------TG-----CTATTGGCCTTTTC---TAATA chr5B_1324 ---------------------TT-----CTATTGGCCTTTTC---TAATA chr5B_1324 ---------------------TT-----CTATTGGCCTTTTC---TAATA chr5B_1328 ---------------------TGTGCTACTATTGGCCTTTCCTAATAATA chr5A_1369 ---------------------TG-----CTATTGGCCTTTTC---TAATA chr4A_1586 AGAGCACATGTTTTTTGTGCTGG-----CTATTGGCCTTTTC---CGATA chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 ACAAAATGGAAACAAAACATGTGT---TTGCTTAC-----------TATT chr5D_1_TraesCS5D01G005200 ACAAAATGGAAACAAAACATGTGT---TTGCTTAC-----------TATT chr5A_291 ACAAAATGGAAACAAAACATATGTG-TTTGCTTAC-----------TATT chr4A_291 ACAAAATGGAAACAAAACA--TGTG-TTTGCTTAC-----------TATT chr4A_793 ACAAAATGGAAACAAAACA--TGTG-TTTGCTTAC-----------TATT chr5B_943 ACAAAATGGAAACAACACA--TGTG-TTTGCTTACTGTTCA--------T chr5A_957 -------------------------------------------------- chr3B_1299 ACTAAATGGAAACAAAACA--CGCC-TTCGCTTAC-----------CATT chr5B_1301 ACTAAATGAAAACAAAACA--CGCC-TTCGCTTAC-----------CATT chr5A_1302 ACGAAATGGAAACAAAACA--CACC-TTCGCTTAC--------------- chr5A_1302 ACGAAATGGAAACAAAACA--CACC-TTCGCTTAC--------------- chr5A_1302 ACGAAATGGAAACAAAACA--CACC-TTCGCTTAC--------------- chr5D_1323 ACAAAATGGAAACAAAACA--CGCC-TTCGCTTAC-----------CATT chr5B_1324 ACAAAATGGAAACAAAACA--GGCC-TTCGCTTAC-----------CATT chr5B_1324 ACAAAATGGAAACAAAACA--CACC-TTCGCTTAC-----------CATA chr5B_1328 ACAAAATGGAAACGGCACA--TGTG-TTTGCTTACTAAGCATTGTTCA-- chr5A_1369 ACGAAATGGAAACAAAACA--CACC-TTCGCTTAC-----------CA-- chr4A_1586 GCAAAAGGGAAACATCATA--TGCGATTTGCTTACTAGGCAT----TATT chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs --------------------S----------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 AAAAAATCCTATATAATCTGTCTCACAAC--TTTTTTA------------ chr5D_1_TraesCS5D01G005200 AAAAAATCCTATATAATCTGTCTCACAAC--TTTTTTA------------ chr5A_291 CAAAAATCCTATATAATCTGTCTCACAAC-TTTTTTTA------------ chr4A_291 CAAAAATCCTATATAATCAGTCTCACAACTTTTTCTTA------------ chr4A_793 CAAAAATCCTATATAATCAGTCTCACAACTTTTTCTTA------------ chr5B_943 CAAATATCTTATATAATCTGGCACGCAACTTTTTCTTA------------ chr5A_957 -------------------------------------------------- chr3B_1299 CAAAAATCGTATATAATCTGTTCTGCAAC-TTTGTTTA------------ chr5B_1301 CAAAAATCGTATATAATCTGTTCTGCAAC-TTTTTTTA------------ chr5A_1302 CAAAAGTCGTATATAATCTGTTCTGCAAC-CATTTTTA------------ chr5A_1302 CAAAAGTCGTATATAATCTGTTCTGCAAC-CATTTTTA------------ chr5A_1302 CAAAAGTCGTATATAATCTGTTCTGCAAC-CATTTTTA------------ chr5D_1323 CAAAAATCGTATATAATCTGTTCTGCAAC-TTTGTTTA------------ chr5B_1324 CAAAAATCGTATATAATCTGGTCTGCAAC-TTTTTTTA------------ chr5B_1324 CAAAAATCGTATATAATCTGTTCCGCAAC-TTTTTTTA------------ chr5B_1328 --AAAATCTTATATAATCTGCCCCGCAGC-CTTTTTTAGGTCAATGTTCA chr5A_1369 --AAAGTCGTATATAATCTGTTCTGCAAC-CATTTTTA------------ chr4A_1586 CAAAATTCTAATACAATCTGTTCCGCAACTTTTTTT-------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs S------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 TTTGTTAGATTACACCAATGCAAGCACATGTTTTTTTGTGCTATACATAT chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 TGGCCTTTCGATTTAATAACAAAATGGAAATAGCATATGTGATTTTCTTA chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 CTAATTAAGCATTGTTCAAATCTCTAGTACAATCTGTTCCGGAACTTTCT chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 TTTCAGAACTGTTCATTTGGTAGACAAGACATGCTTTTTGTGCTCTTGGC chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 CTTCTCTAGTTAGTAACAAAATGGGAACATCATATGTGCAAATCTCTAAT chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 ---------------------------GGTCACTGTTCATTTGCTAAATG chr5D_1_TraesCS5D01G005200 ---------------------------GGTCACTGTTCATTTGCTAAATG chr5A_291 ---------------------------GGTCACTGTTCATTTGCTAAATG chr4A_291 ---------------------------GGTCACTGTTCATTTGCTAAATG chr4A_793 ---------------------------GGTCACTGTTCATTTGCTAAGTG chr5B_943 ---------------------------GGTCACTGTTCATTTGCTGAATG chr5A_957 -------------------------------------------------- chr3B_1299 ---------------------------GGTCACTGTTCATTTGCTAAATG chr5B_1301 ---------------------------GGTCACTGTTCATTTGCTAAATG chr5A_1302 ---------------------------GGTCACTGTTCATTTGCTAAATG chr5A_1302 ---------------------------GGTCACTGTTCATTTGCTAAATG chr5A_1302 ---------------------------GGTCACTGTTCATTTGCTAAATG chr5D_1323 ---------------------------GGTCACTGTTCATTTGCTAAATG chr5B_1324 ---------------------------GGTCACTGTTCATTTGCTAAATG chr5B_1324 ---------------------------GGTCACTGTTCATTTGCTAAATG chr5B_1328 ACAATCTGTTCCGGAACTTTCTTCTCAGGTCACTGTTCATTTGCTAAATG chr5A_1369 ---------------------------GGTCACTGTTCATTTGCTAAATG chr4A_1586 --------------------------AGGTCACTGTTCATTTGCTAAATG chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 GCACCAGTGCAAAGGGTCAGCTGGTCTATCACCAGCCCCACTATGATCTC chr5D_1_TraesCS5D01G005200 GCACCAGTGCAAAGGGTCAGCTGGTCTATCACCAGCCCCACTATGATCTC chr5A_291 GCACCAGTGCAAAGGGCCAGCTGGTCTATCACCAGCCCCACTACGATCTC chr4A_291 GCACCAGTGCAAAGGGCCAGCTGGTCTATCACCAGCCCCACTATGATCTC chr4A_793 GCACCAGTGCAAAGGGCCAGCTGGTCTATCACCAGCCCCACTATGATCTC chr5B_943 GCACAAGTGCAAAGGGCCAGCTGGTCTATCACCAGCCCCACTATGATCTC chr5A_957 -------------------------------------------------- chr3B_1299 GCACCAGTGCAAAGGGCCAGCTGGTCTATCTCCAGCCCCACTACGATCTC chr5B_1301 GCACCAGTGCAAAGGGCCAGCTGGTCTATCTCCAGCCCCACTACGAGCTC chr5A_1302 GCACCAGTGCAAAGGGCCAGCTGGTCTATCTCCAGCCCCACTACGATCTC chr5A_1302 GCACCAGTGCAAAGGGCCAGCTGGTCTATCTCCAGCCCCACTACGATCTC chr5A_1302 GCACCAGTGCAAAGGGCCAGCTGGTCTATCTCCAGCCCCACTACGATCTC chr5D_1323 GCACCAGTGCAAAGGGCCAGCTGGTCTATCTCCAGCCCCACTACGATCTC chr5B_1324 GCACCGGTGCAAAGGGCCAGCTGGTGTATCTCCAGCCCCACTACGATCTC chr5B_1324 GCACCAGTGCAAAGGGCCAGCTGGTGTATCTCCAGCCCCACTACGATCTC chr5B_1328 GCACCAGTGCAAAGGGCAATCTGGTCTACTATCAGCCTCATTACGATATC chr5A_1369 GCACCAGTGCAAAGGGCCAGCTGGTCTATCTCCAGCCCCACTACGATCTC chr4A_1586 GCACCAGTGCAAAGGGCACGCTGGTCTACTATCAGCCCCATTACGATATC chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs ----------------S--------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 GCTTTCCTGAATGTTCAGATGGATCAACCAATCAAGTTACCATCTTTTAA chr5D_1_TraesCS5D01G005200 GCTTTCCTGAATGTTCAGATGGATCAACCAATCAAGTTACCATCTTTTAA chr5A_291 GCTTTCCTGAATGTTCAGATGGATCAACCAATCAAGTTACCATCTTTTAA chr4A_291 GCTTTCCTGAATGTTCAGATGGATCAACCAATCAAGTTACCATCTTTTAA chr4A_793 GCTTTCCTGAATGTTCAGATGGATCAACCAATCAAGTTACCATCTTTTAA chr5B_943 GCTTTGCTGAACGTTCAGGTGAATCAACCAATCAAGTTACCATCTTTTAA chr5A_957 -------------------------------------------------- chr3B_1299 GCTTTCCTGAGTGTTCAGATGGATCAACCAATCAACTTACCATCTTTGAA chr5B_1301 GCTTTCCTGAGCGTTCAGGTGGATCAACCAATCAACTTGCCATCTTTGAA chr5A_1302 GCTTTCCTGAGCGTTCAGGTGGATCAACCAATCAACTTACCATCTTTGAA chr5A_1302 GCTTTCCTGAGCGTTCAGGAGGATCAACCAATCAACTTACCATCTTTGAA chr5A_1302 GCTTTCCTGAGCGTTCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr5D_1323 GCTTTCCTGAGCGTTCAGGTGGATCAACCAATCAACTTACCATCTTTGAA chr5B_1324 GCTTTCCTGAGCGTTCAGGTGGATCAACCAATCAACGTACCATCTTTGAA chr5B_1324 GCTTTCTTGAGCGTTCAGGTGGATCAACCAATCAACGTACCATCTTTGAA chr5B_1328 GCTTTCTTGAATGTTGAGGTGGGCCAACCAATCAAGTTACCATCCTTTCG chr5A_1369 GCTTTCCTGAACGTTCAGGTGGATCAACCAATCAACTTACCATCTTTGAA chr4A_1586 GCTTTCTTGAATGTTGAGGTGGATCAACCAATCAAGTTACCAACTTTTTG chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 TGAAGAAGATGTAGAATTTGCTCAAAAGATTTTTCGACTCGGAAGAGACA chr5D_1_TraesCS5D01G005200 TGAAGAAGATGTAGAATTTGCTCAAAAGATTTTTCGACTCGGAAGAGACA chr5A_291 TGAAAAAGATGTAGAATTTGCTCAAAAGATTTTTCGACTTGGAAGAGACA chr4A_291 TGAAAAAGATGTAGAATTTGCTCAAAAGATTTTTCGACTTGGAAGAGACA chr4A_793 TGAAAAAGATGTAGAATTTGCTCAAAAGATTTTTCGACTTGGAAGAGACA chr5B_943 TGAAAAAGATGTAGAATTTGCTTAGAAGGTTTTTCGGCTCGGAAGAGACA chr5A_957 -------------------------------------------------- chr3B_1299 TGAAAAAGATGTAGAATTTGCTCAAGAGGTTTTTCGGCTCGGAAGAGACA chr5B_1301 TGAAAAAGATGTAGAATTTGCTCAAGAGGTTTTTCGGCTCGGAAGAGACA chr5A_1302 TGAAAAAGATGTAGAATTTGCTCAAGAGGTTTTTCGGCTCGGAAGAGACA chr5A_1302 TGAAAAAGATGTAGAATTTGCTCAAGAGGTTTTTCGGCTCGGAAGAGACA chr5A_1302 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr5D_1323 TGAAAAAGATGTAGAATTTGCTCAAGAGGTTTTTCGGCTCGGAAGAGACA chr5B_1324 TGAAAAAAATGTAAAATTTGCTCAAGAGGTTTTTCGGCTCGGAAGAGACA chr5B_1324 TGAAAAAAATGTAAAATTTGCTCAAGAGGTTTTTTGGTTCAGAAGAGACA chr5B_1328 TGAAGAAGATGTAAAATTTGCTCAAGATGTTTTTCGGCTCGGAAGAGACG chr5A_1369 TGAAAAAGATGTAGAATTTGCTCAAGAGGTTTTTCGGCTCAGAAGAGACA chr4A_1586 TGAAAAGGATGTAAAATTTGCCGAAGACATTTTTCGGATCGGAAGAGACA chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 ATGCCTTAAATCTAAGGATAACATATGCTAGAGCAGAATATCTGAATCCA chr5D_1_TraesCS5D01G005200 ATGCCTTAAATCTAAGGATAACATATGCTAGAGCAGAATATCTGAATCCA chr5A_291 ATGCCTTAAATCTAAGGATAACATATGCTAGAGCAGAATATCTGAATCCA chr4A_291 ATGCCTTAAATCTAAGGATAACATATGCTAGAGCAGAATATCTGAATCCA chr4A_793 ATGCCTTAAATCTAAGGATAACATATGCTAGAGCAGAATATCTGAATCCA chr5B_943 ATTCCTTAAATCTAAGGATAACATATGCTAGAGCAGAATATGTGAATCCA chr5A_957 -------------------------------------------------- chr3B_1299 ATTCCTTAAATCTAAGGATAACATATGCCAGGGCAGAATATTTGAATCCA chr5B_1301 ATTCCTTAAATCTAAGGATAACATATGCCAGGGCAGAATATTTGAATCCA chr5A_1302 ATTCCTTAAATCTAAGGATAACATATGCCAGGGCAGAATATTTGAATCCA chr5A_1302 ATTCCTTAAATCTAAGGATAACATATGCCAGGGCAGAATATTTGAATCCA chr5A_1302 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr5D_1323 ATTCCTTAAATCTAAGGATAACATATGCCAGGGCAGAATATTTGAATCCA chr5B_1324 ATTCCTTGGATCTAAGGATGACATATGCTAGGGCAGAATATTTGAATCCA chr5B_1324 ATTCCTTGGATCTAAGGATAACATATGCTAGGGCAGAATATTTGAATCCA chr5B_1328 ATTCCTTAAATCTAAGGATAACATATGCTAGGGCAGAATATAAGAATCCA chr5A_1369 ATTCCTTAAATCTAAGGATAACATATGCCAGGGCAGAATATTTGAATCCA chr4A_1586 ATTCCTTAAATCTAAGGATAACATATGCTAGGGCAGAATATCGGAATCCA chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 ACCATGTATGAACGGTACCACAATATATATTTCCGTTCTCCAGATGGCCA chr5D_1_TraesCS5D01G005200 ACCATGTATGAACGGTACCACAATATATATTTCCGTTCTCCAGATGGCCA chr5A_291 AGCATGTATGAACGGTACCACAATATATATTTCCGTTCTCCAGATGGCCA chr4A_291 ACCATGTATGAACGGTACCACAATATATATTTCCGTTCTCCAGATGGCCA chr4A_793 ACCATGTATGAACGGTACCACAATATATATTTCCGTTCTCCAGATGGCCA chr5B_943 ACCATGTATGAGCGGCACCACAATGTGTATTTATGTTCTCCAGATGGCCA chr5A_957 -------------------------------------------------- chr3B_1299 ACCATGTTTGAGCGGCACCACAATGTATACCTCCGTTCTCCAGATGGCCA chr5B_1301 ACCATGTTTGAGCGGCACCACAATGTATACTTCCGTTCTCCAGATGGCCA chr5A_1302 ACTATGTTTGAGCGGCACCACAATGTATACTTCCGTTCTCCAGATGGCCA chr5A_1302 ACCATGTTTGAGCGGCACCACAATGTATACTTCCGTTCTCCAGATGGCCA chr5A_1302 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr5D_1323 ACCATGTTTGAGCGGCACCACAATGTATACTTCCGTTCTCCAGATGGCCA chr5B_1324 ACCATGTTTGAGCGGCACCACAATGTATATTTCCGTTCTCCAGATGGCCA chr5B_1324 ACCATGTTTGAGCGGCATCACAATGTATATTTCCGTTCTCCAGATGTCCA chr5B_1328 AACATGTACCGGCGGTACCACAATGCGCACTTCCGATCTCCAGATGACCA chr5A_1369 ACCATGTTTGAGCGGCACCACAATGTATACTTCCGTTCTGCAGATGGCCA chr4A_1586 AGCATGTACCGCCGGTACCACAATGTGCACTTCCGTTCTCCAGATGGCCA chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 TGGCGATGATAATGAGGTAATATATCTTATCATGAGATAGTA-TTGTATA chr5D_1_TraesCS5D01G005200 TGGCGATGATAATGAGGTAATATATCTTATCATGAGATAGTA-TTGTATA chr5A_291 TGGCGATGATAATGAGGTAATATATCTTATCATGAGATAGTA-TTGTATA chr4A_291 TGGCGATGATAATGAGGTAATATATCTTATCATGAGATAGTA-TTGTATA chr4A_793 TGGCGATGATAATGAGGTAATATATCTTATCATGAGATAGTA-TTGTATA chr5B_943 TTGCAATGATAATGAGGTAATATATCATATTATGAGATAGTA-TTATATA chr5A_957 -------------------------------------------------- chr3B_1299 TGGTGATGATAATGAGGTGATATATCTTATCATTAGATAGAA-TTATATA chr5B_1301 TGGTGATGATAATGAGGTGATATATCTTATCATTAGATAGAA-TTATATA chr5A_1302 TGGTGATGATAATGAGGTGATATATCTTATCATTAGATAGTA-TTATATA chr5A_1302 TGGTGATGATAATGAGGTGATATATCTTATCATTAGATAGTA-TTATACA chr5A_1302 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr5D_1323 TGGTGATGATAATGAGGTGATATATCTTATCATTAGATAGAA-TTATATA chr5B_1324 TGGCGATGATAATGAGGTAATATATCTTATCATTTGATAGTGGTGATATA chr5B_1324 TGGCGATGATAATGAGGTAATATATCTTATCATTTGATAGTA-TGATATA chr5B_1328 TGGTGATGATAATGAGGTAATATATCTTATCATGAGATAGTA-TTATATA chr5A_1369 TGGTGATGATAATGAGGTGATATATCTTATCATTAGATAGTA-TTATATA chr4A_1586 TGGTGATGATAATGAGGTAATGTATCTTATCATGAGGTAGTA-CTATATG chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 CATTTGTTACAATTTTGAGTTTTGTTTGATGACAACTTTGTGTTCTATAT chr5D_1_TraesCS5D01G005200 CATTTGTTACAATTTTGAGTTTTGTTTGATGACAACTTTGTGTTCTATAT chr5A_291 GATTTGTTACAATTTTGAGTTTTGTTTCATGACAACTTTGTGTTCTATAT chr4A_291 GATTTGTTACAATTTTGAGTTTTGTTTCATGACAACTTTGTGTTCTATAT chr4A_793 GATTTGTTACAATTTTGAGTTTTGTTTCATGACAACTTTGTGTTCTATAT chr5B_943 CATTTGTTACAATTT-GAGTTTTGTTTGATGACATCTTTTTGTTCTATAT chr5A_957 -------------------------------------------------- chr3B_1299 CATTTGGTACAGTTTTGAGTTTTGTGTGATGTCATCTTTATGTTCTATAT chr5B_1301 CATTTGGTACAGTTTTGAGTTTTGTGTGATGTCATCTTTATGTTCTATAT chr5A_1302 CATTTGGTACAGTTTTGAGTTTTGTGTGATGTCATCTTTGTGTTCTATAT chr5A_1302 CATTTGGTACAGTTTTGAGTTTTGTGTGATGTCATCTTTATGTTCTATAT chr5A_1302 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr5D_1323 CATTTGGTACAGTTTTGAGTTTTGTGTGATGTCATCTTTATGTTCTATAT chr5B_1324 CATTTGGTATAGTTTTGAGTTTCATGTGATGTCATCTTTAAGTTCTATAT chr5B_1324 CAGTTGGTATAGTTTTGAGTTCCGGGTGATGTCATCTTTAAGTTCTATAT chr5B_1328 CATTTGTTACAACTATTAGTTTTTCTATGTCATTTGTT------------ chr5A_1369 CATTTGGTACAGTTTTGAGTTTTGTGTGATGTCATCTTTATGTTCTATAT chr4A_1586 CATTTGTTACAACTTTGAGTTTTTCTATGTCATTTGTT------------ chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 TGCTATCTATTGTTATAAGATTTTCCTTGTTCTTGCAAACTCTCATAT-- chr5D_1_TraesCS5D01G005200 TGCTATCTATTGTTATAAGATTTTCCTTGTTCTTGCAAACTCTCATAT-- chr5A_291 TGCTATCTATTGTTATAAGATTTTCCTTGTTCTTGCAAACTCTCATAT-- chr4A_291 TGCTATCTATTGTTATAAGATTTTCCTTGTTCTTGCAAACTCTCATAT-- chr4A_793 TGATATCTATTGTTATAAGATTTTCCTTGTTCTTGCAAACTCTCATAT-- chr5B_943 TGCAATATACTATTATAACATGTTTGTTGTTCTTGCAAACTCTCGTAT-- chr5A_957 -------------------------------------------------- chr3B_1299 TGCAATCTATTGTTATAACATTTTTTT-GTTCTTGCAAACTTTCATATAT chr5B_1301 TGCAATCTATTGTTATAACATTTTTTTTGTTCTTGCAAACTTTCATATAT chr5A_1302 TGCAATCTATTGTTATAACATTTTTTTTGTTCTTGCAAAGTTTCATATAT chr5A_1302 TGCAATCTATTGTTATAACATTTTTTTTGTTCTTGCAAACTTTCATATAT chr5A_1302 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr5D_1323 TGCAATCTATTGTTATAACATTTTTTTTGTTCTTGCAAACTTTCATATAT chr5B_1324 TGCAATCTATTGTTATAACATTTTTCTTGTTCTCGCTAA--CTCATATAT chr5B_1324 TGCAATCTATTGTTATAACATTTTTCTTGTTCTTGCTAACTCTCATATAT chr5B_1328 ------------TTATAACATCTTTCTTGTTACTGTAAACTCTCATGT-- chr5A_1369 TGCAATCTATTGTTATAACATTTTTTTTGTTCTTGCAAACTTTCATATAT chr4A_1586 ------------TTATAACATTTTTCTTATTACTGTAAATTCTCATGT-- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 GTTGCCAATATGAATTGTTGCAGTATGACAATG--GGGGGCCAGTTATTG chr5D_1_TraesCS5D01G005200 GTTGCCAATATGAATTGTTGCAGTATGACAATG--GGGGGCCAGTTATTG chr5A_291 GTTGCCAATATGAATTGTTGCAGTATGACAATG--GGGGGCCAGTTATTG chr4A_291 GTTGCCAATATGAATTGTTGCAGTATGACAATG--GGGGGCCAGTTATTG chr4A_793 GTTGCCAATATGAATTGTTGCAGTATGACAATG--GGGGGCCAGTTATTG chr5B_943 GTTGCTAGTATGAATTGTTACAGTATGACAATG--GGGGGCCGGTTATTG chr5A_957 ---------ATGAATTGTTACAGTATGACAATG--GGGGTCCAGTTATTG chr3B_1299 GTTGCCAATATGAATTGTTGTAGTTTGACTATG--GGGGGCCAGTTATTG chr5B_1301 GTTGCCAATATGAATTGTTGCAGTTTGACTATG--GGGGGCCAGTTATTG chr5A_1302 GTTGCCAATATGAATTGTTGCAGTTTGACTATG--GGGGGCTAGTTATTG chr5A_1302 GTTGCCAATATGAATTGTTGCTGTTTGACTATG--GGGGGCCAGTTATTG chr5A_1302 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-- chr5D_1323 GTTGCCAATATGAATTGTTGCAGTTTGACTATG--GGGGGCCAGTTATTG chr5B_1324 GTTGCCAACATTAATTGTTGCAGTATGACAATGGGGGGGGGCACTTATTG chr5B_1324 GTTGCCAACATGAATTGTTGCAGTAT------------------------ chr5B_1328 TTTGTCAATGTGAATTGTTGTAGTATGACAATG--GAGGCCTAGTCATTG chr5A_1369 GTTGCCAATATGAATTGTTGCAGTTTGACTATG--GGGGGCCAGTTATTG chr4A_1586 TTTGTCAATATGAATTGTTGTAGTATGACAATG--GGGGACTAGTCATTG chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 AC-TTGGGTGGAAAAGTGGTCGGAATTGTCAATGACCCTGAGAGATTTGA chr5D_1_TraesCS5D01G005200 AC-TTGGGTGGAAAAGTGGTCGGAATTGTCAATGACCCTGAGAGATTTGA chr5A_291 AC-TTGGGTGGAAAAGTGGTCGGAATGGTCAATGACCCTGAGAGATTTGA chr4A_291 AC-TTGGGTGGAAAAGTGGTCGGAATGGTCAATGACCTTGAGAGATTTGA chr4A_793 AC-TTGGGTGGAAAAGTGGTCGGAATGGTCAATGACCCTGAGAGATTTGA chr5B_943 ACTTTGGATGGAAAAGTTGTCGGAATGGTCAACGACCCTGAGAGATTTGA chr5A_957 AC-TTGGATGGAGAAGTTGTTGGAATGGTCAACGACCCTGAGAGATTTGA chr3B_1299 AC-CTGTGTGGAGAAGTTGTCGGAATGGTCAACGACCCTAAGAGATTTGG chr5B_1301 AC-CTGTGTGGAGAAGTTGTCGGAATGGTCAACGACCCTAAGAGATTTGG chr5A_1302 AC-CTGCGTGGAGAAGTTGTCGGAATGGTCAACGTCCCTAAGAGATTTGG chr5A_1302 AC-CTGCGTGGAGAAGTTGTCGGAATGGTCAACGTCCCTAAGAGATTTGG chr5A_1302 -------------------------------------------------- chr5D_1323 AC-CTGTGTGGTGAAGTTGTCGGAATGGTCAACGACCCTAAGAGATTTGG chr5B_1324 AC-TTGGGTGGAGAAGTTGTCGGAATGGTCAACGTCCCTAAGTGATTCAG chr5B_1324 -------------------------------------------------- chr5B_1328 AC-TTGAATGAAAACGTTGTCGGAATGGTCAACCTCCCTAAGAGATTTGG chr5A_1369 AC-CTGCGTGGAGAAGTTGTCGGAATGGTCAACGTCCCTAAGAGATTTGG chr4A_1586 AC-TTGAAGGAGAAAGTTGTCGGAATGGTCAACCTCCCTAAGAGATTTGG chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs --------------------------S----------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 --------------------------TGTCAATGACCCTGAGAGATTTGA forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 GTCTTTTATACCTTCTTCCATTGTGCTCAATTGTTTGGATTCATGGAGGA chr5D_1_TraesCS5D01G005200 GTCTTTTATACCTTCTTCCATTGTGCTCAATTGTTTGGATTCATGGAGGA chr5A_291 GTCTTTTATACCTTCTTCCATTGTGCTCAATTGTTTGGATTCATGGAGGA chr4A_291 GTCTTTTATACCTTCTTCCATTGTGCTCAATTGTTTGGATTCATGGAGGA chr4A_793 GTCTTTTATACCTTCTTCCATTGTGCTCAGTTGTTTGGATTCATGGAGGA chr5B_943 GTCTTTTATATCTTCTTCCATTTTGCTCAATTGTTTGGATTCATGGAGGA chr5A_957 GTCTTTTATACCTTCTTCCATTTTGCTCAATTGTTTGGATTCATGGAGGA chr3B_1299 GTCTTTTATACCTTCTTCCATTTTGCTCAATTGTTTGGATTCATGGAAGA chr5B_1301 GTCTTTTATACCTTCTTCCATTTTGCTCAATTGTTTGGATTCATCGAAGA chr5A_1302 GTCTTTCATACCTTCTTCCATTTTGCTCAATTGTTCGGATTCATGGAAGA chr5A_1302 GTCTTTCATACCTTCTTCCATTTTGCTCAATTGTTTGGATTCATGGAAGA chr5A_1302 -------------------------------------------------- chr5D_1323 GTCTTTTGTACCTTCTTCCATTTTGCTCAATTGTTTGGATTCATGGAAGA chr5B_1324 GTCTTTCATACCTTCTTCCATTTTGCTCAATTGTTTGGATTCATGGAAGA chr5B_1324 -------------------------------------------------- chr5B_1328 GTCTTTTATACCTTCTTCCATTTTGCTCAACTGTTTGGATTCATGGAAGA chr5A_1369 GTCTTTCATACCTTCTT-CATTTTGCTCAATTGTTTGGATTCATGGAAGA chr4A_1586 GTCTTTTATACCGTCTTCCATTTTGCTCAATTGTTTGGATGCATGGAAGA chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 AATATCGGTACGTTTTCCCTCTTAGTTCTGTAATGGTATCAATGAA---- chr5D_1_TraesCS5D01G005200 AATATCGGTACGTTTTCCCTCTTAGTTCTGTAATGGTATCAATGAA---- chr5A_291 AATATCAGTACGTTTTTCCTCTCAGTTCTGTAATGGTATCAATGAA---- chr4A_291 AATATCGGTACGTTTTTCCTCTCAGTTCTGTAATGGTATCAATGAA---- chr4A_793 AATATCGGTACGTTTTTCCTCTCAGTTCTGTAATGGTATCAATGAA---- chr5B_943 AATATCGGTACATTTTTCCTCTCAGTTCTGTCATGGTATCAATGAA---- chr5A_957 AATATCGGTACGGTTTCCCTTTCAGTTCTGTGATGGACACAATGAA---- chr3B_1299 AATATCAGTACGTTTTTTCTCTCAGTGCTGTGATAGTATTAGA------- chr5B_1301 AATATCAGTACGTTTTCTCTCTCAGTGCTGTCATAGTATTAGA------- chr5A_1302 AATATCAGTACGTTTTCTCTCTCAGTGCTGTGATAGTATTAGA------- chr5A_1302 AATATCAGTACGTTTTCTCTCTCAGTGCTGTGATAGTATTAGA------- chr5A_1302 -------------------------------------------------- chr5D_1323 AATATCAGTACGTTTTTTCTCTCAGTGCTGTGATAGTATTAGA------- chr5B_1324 AATATTAGTATGTTTTTTCTCTCAATGTTGTGATAGTATCAGA------- chr5B_1324 -------------------------------------------------- chr5B_1328 AATATCGGTGCGTTTTTCCTCTCACCTCTGAGATAGTATCTATATGATTG chr5A_1369 AATATCAGTACGTTTTCTCTCTCAGTGCTGTGATAGTATTAGA------- chr4A_1586 AATATCGGTTTGTTTTTCCTCTCAGCTCTGTGATAGCATCTATATGATTA chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs ----------------------S--------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -----------------AATGTGTTC--CCCTATTGTTTCTTTTCT-ACT chr5D_1_TraesCS5D01G005200 -----------------AATGTGTTC--CCCTATTGTTTCTTTTCT-ACT chr5A_291 -----------------AATGTGTTCTCCCCTATTGTTTCTTTTTC-ACT chr4A_291 -----------------AATGTGTTCTCCCCTATTGTTTCTTTTTT-ACT chr4A_793 -----------------AATGTGTTCTCCCCTATTGTTTCTTTTTT-ACT chr5B_943 -----------------AATGTATTCTCTCCTGTTGTTTCTTTTTTTAGT chr5A_957 -----------------AATGTGTTCTCTCCTATTGTTTCTTTTTT-AGT chr3B_1299 ---------------CTAATGTGGTG--TCTCCTAATTGTTATTTTTACC chr5B_1301 ---------------CTAATGTGGTG--TCTCCTAATTGTTCTTTTTACC chr5A_1302 ---------------CTAATGTGGTG--TCTCCTAATTGTTCTTTTTACG chr5A_1302 ---------------CTAATGTGGTG--TCTCCTAATTGTTCTTTTTACG chr5A_1302 -------------------------------------------------- chr5D_1323 ---------------CTAATGTGGTG--TCTCCTAATTGTTCTTTTTACC chr5B_1324 ---------------CTAATGTGGTG--TCTCCTAATTGTTCTTTTTACG chr5B_1324 -------------------------------------------------- chr5B_1328 ATTGGTGATGCTAAGCTAATGTGTTC--CCTCCTATGTTTTCTTCTTACT chr5A_1369 ---------------CTAATGTGGTG--TCTCCTAATTGTTCTTTTTACG chr4A_1586 TTTGATAATGCTAAGCTAATGTGTTC--CTCC-----TATTTTTTCTTCT chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 TA-TTGTTAGGAGTCGGACTATTTCTCATAG--TATCTATTTTATCATTT chr5D_1_TraesCS5D01G005200 TA-TTGTTAGGAGTCGGACTATTTCTCATAG--TATCTATTTTATCATTT chr5A_291 TA-TTGTTAGAAGTCGAACTATTTCTCGTAG--TATCTGTTTTATCATTT chr4A_291 TA-TTGTTAGAAGTCGAACTATTTCTCGTAG--TATCTGTTTTATCATTT chr4A_793 TA-TTGTTAGAAGTCGAACTATTTCTCGTAG--TATCTGTTTTATCATTT chr5B_943 TA-TTGTTAGGATTTGAACTATTTCTCGTAG--TATCTATTTTATCATTT chr5A_957 TA-TCGTTAGGAGTCAAACTATTTCTCATAGTATATCTATTTTATCATTT chr3B_1299 TATTTTT-AGGAGTC--ATTATTTTTAGTGG--TATCTATTTCCTCACTT chr5B_1301 TATTTTT-AGGAGTC--ATTACTTTTAGTAG--TGTCTATTTTCTCACTT chr5A_1302 TATTTTT-AGGAGTC--ATTATTTTTAGTAG--TATCTATTTTCTCACTT chr5A_1302 TATTTTT-AGGAGTC--ATTATTTTTAGTAG--TATCTATTTTCTCACTT chr5A_1302 -------------------------------------------------- chr5D_1323 TA-TTTT-AGGAGTC--ATTATTTTTAGTAG--TATCTATTTTCTCACTT chr5B_1324 TA-TTTTTAGGAGTCAAATTATTTTTAGTAG--TATCTATTTTCTCACTT chr5B_1324 -------------------------------------------------- chr5B_1328 TA-TTGTTAGAAGTAGAACTAATTTTTGTAG--TATCTATTTGCTCACTT chr5A_1369 TA-TTTTTAGGAGTC--ATTATTTTTAGTAG--TATCTATTTTCTCACTT chr4A_1586 TA-TTGTTAGAAGTCGAACTATTTTTTGTAG--TATCTATTTGCTCACTT chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs ----------------S--------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 TTATGCAATCT--------------------------------------- chr5D_1_TraesCS5D01G005200 TTATGCAATCT--------------------------------------- chr5A_291 TTATGCAATCT--------------------------------------- chr4A_291 TTATGCAATCT--------------------------------------- chr4A_793 TTATGCAATCT--------------------------------------- chr5B_943 TTATGCAATTT--------------------------------------- chr5A_957 TTATGCAATTT--------------------------------------- chr3B_1299 TTATGGAATTT--------------------------------------- chr5B_1301 TTATGAAATTT--------------------------------------- chr5A_1302 TTATGAAATTT--------------------------------------- chr5A_1302 TTATGAAATTT--------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 TTATGAAATTT--------------------------------------- chr5B_1324 TTATGAAATTT--------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 TTATGCAATTTAACAATCTTCAGGATATCGGTAACTGGTAGCATATCGGT chr5A_1369 TTATGAAATTT--------------------------------------- chr4A_1586 TTATGCAATTTAACAATGT--------TCGGTAATTGGTAGCATATCTGT chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 TGGGTGCTGAGTAGGGATAAATTGGCTTATCAGCCTGTTAACTGAATTCA chr5A_1369 -------------------------------------------------- chr4A_1586 TGGGTGCTGACTAGGGATTAATCGGCTTATCAGCCTATTAACTGAATTTA chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 TTGGTAGGTTAACTAGGGCCATGTCTATATATATCCTAGGCTGCATCTGA chr5A_1369 -------------------------------------------------- chr4A_1586 TTGGTAGGTTGACTAGGG-----------TATATCCTAGCCTGCATCTGA chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 ATTGCTTTTCAATATTGGAGCACATGCTGCAGTAGAAGCAGCCATAGATT chr5A_1369 -------------------------------------------------- chr4A_1586 ATTTCTTTTCCATGTTGGAGCACTTGCTGCAGCAGAAGAAGCCATAGATT chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 GCAGCAAATGCCAAATGCACCACACCAGTGCATTCTAGGTACTACATAGG chr5A_1369 -------------------------------------------------- chr4A_1586 GCTACAAATGTCAAATGCACCACATCAGTATATAGTAGATACTACATAGG chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 AGAGCAGCACTGCAGCAGTATTACATCACAGAGGAGAAGAGTTTACCTTG chr5A_1369 -------------------------------------------------- chr4A_1586 AGAGCAGCAA--CAGCAGTATTACATCACAGAGGAGAGGAGTTTAACTTG chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 CGGCCTGTTGATGCCATGGATAGACGACAGGAGGAGCAGATGACGAAGCA chr5A_1369 -------------------------------------------------- chr4A_1586 CTACGTCAGCGGCAGCTCAGAGCACGG----------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 GCTGGAGGAGTGGAGATGTGTCCGCTGCGGTGATGCAGGCAGCTGCTTGA chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 GGAGGGTCAACGCAGACGGCTGCTTGGCGCGGGGGCTGCTCCTCGATGAG chr5A_1369 -------------------------------------------------- chr4A_1586 ----------------------------GCTGTGGCTGCTACTCCATGAG chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 CGGGAGAGATC-----ATGGACCAACCTAATGCGTGGGAGGCTGTGGGTA chr5A_1369 -------------------------------------------------- chr4A_1586 CGGGAGAATGGAGGGAATGGTCTAACCTAATGCGCGATAGGCTTTGGGGA chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 AAGGGAGGGAACAGGCTAAATTCGGGCCAAAATCGCCCAGGCAGTTAATC chr5A_1369 -------------------------------------------------- chr4A_1586 AAGGGAGGGAACGGGCTAAATTTGGGCCAAAATTGCCCAGGCAGTTAATC chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 GACCCAGCCAATAATTTGGTCTGACAAGTCGATTAATCTGCTTGTTAGAC chr5A_1369 -------------------------------------------------- chr4A_1586 GGCCCAGCTGACAATTTGGTCTGAC-AGCCAATTAATCGGCTTATCAGAC chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 AGATAAATTGGTCCACCCAGTTAATTGCGTGAATAGGTCATTTTTAACTG chr5A_1369 -------------------------------------------------- chr4A_1586 AGGTAAATCGATCCACCCAGTTAATTGCGTGAATAGGTGGTTTTCATATC chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 ACTGGTATGC-------CGATTAACTGGCAGATATATATTTTGAACAGTG chr5A_1369 -------------------------------------------------- chr4A_1586 GGCAGGTGGTCGAGAGACGATTAACTATCCGATATGTTCTCAGAGC---- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 ------AATGACCATAA-GTTATGTATAGATTCTAAAACAT--GGTGATC chr5D_1_TraesCS5D01G005200 ------AATGACCATAA-GTTATGTATAGATTCTAAAACAT--GGTGATC chr5A_291 ------AATGACCATAA-GTTATGTATAGATTCTACAACAA--GGTGATC chr4A_291 ------AATGAACATAA-GTTATGTATAGATTCTACAACAA--GGTGATC chr4A_793 ------AATGACCATAA-GTTATGTATAGATTCTACAACAA--GGTGATC chr5B_943 ------AATGACCATAAAATTATGTAAAGATTCTATAAAAA--AGTGATC chr5A_957 ------AATGACCATAAAGTTATGTAAAGATTCTAAAAAGA--AGTGAGC chr3B_1299 ------AATTACCATAA-GTTGTGTAAAGATTCTCAAAGAATATATATGT chr5B_1301 ------AATTACCATAA-GTTGTGTAAAGATTCTCAAA------------ chr5A_1302 ------AATGACCATAA-GTTGTGTAAGATT------------------- chr5A_1302 ------AATGACCATAA-GTTGTGTAAAGATTTTCAAAGAAAATATCATC chr5A_1302 -------------------------------------------------- chr5D_1323 ------AATTACCATAA-GTTGTGTAAAGATTCTCAAAGAATATATATGT chr5B_1324 ------AATGACCATAA-GTTGTGTAAAGATTCTCATAGAAAATACCATC chr5B_1324 -------------------------------------------------- chr5B_1328 CAATTTAATGACCATAG-GTTATGTTAAGATTCTCAAAGAAAATGTGATC chr5A_1369 ------AATGACCATAA-GTTGTGTAAAGATTTTCAAAGAAAATATCATC chr4A_1586 --------------------------------------AAA--TGTGATC chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs ----------------------------------------S--------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 ATTGTTGTGTTTTATTATGTATATATA--CAGAGA--GATATGTT----- chr5D_1_TraesCS5D01G005200 ATTGTTGTGTTTTATTATGTATATATA--CAGAGA--GATATGTT----- chr5A_291 ATTGTTGTGTTTTATTATGTATATATA--CAGAGA--GATATGTT----- chr4A_291 ATTGTTGTGTTTTATTATGTATATATA--CAGAGA--GATATGTT----- chr4A_793 ATTGTTGTGTTTTATTATGTATATATA--CAGAGA--GATATGTT----- chr5B_943 ATTGTCGTATT---TTATGTATATATA--TAGAGA--CATATGTTTGAAT chr5A_957 ATTGTCGTATT---TTATGTATATATA--TAGAGAGACATATGTTTAAAA chr3B_1299 G----------------TGTATATATA--TATAT---------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 ATCATCTC----------------------------------GTTTGAAC chr5A_1302 -------------------------------------------------- chr5D_1323 G----------------TGTGTGTATACATATAT---------------- chr5B_1324 ATTGTCGTGTT---TTATGTAT---------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 ATTGTCGTGTT---TTATGTATAGACA--TGC--AGTCATATGTTTGTAC chr5A_1369 ATCATCTC----------------------------------GTTTGAAC chr4A_1586 AGTGCCTTTTT---TTATGTATATATA--CATAG--TCGTATGTCTGAAC chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -AGTGGCTGCAATAAATAACTTAACAACAATAATCATTTATAAGCAAATC chr5D_1_TraesCS5D01G005200 -AGTGGCTGCAATAAATAACTTAACAACAATAATCATTTATAAGCAAATC chr5A_291 -AGTGGCTGCAATATATAACTTAACAACAATAATCATTTATAAGCAAATC chr4A_291 -AGTGGCTGCAATATATAACTTTACAACAATAATCATTTATAAGCAAATC chr4A_793 -AGTGGCTGCAATATATAACTTTACAACAATAATCATTTATAAGCAAATC chr5B_943 AAGTGGCTGTAATAAATAATTTAATAATAATAGTAATTTATAAGGAAATC chr5A_957 AAGTGGCTGCAATAAATAATTTAACAATAATAATCATTTATAAGGAAATC chr3B_1299 -----------------------------ATACTCATTTGTAAGAAAATC chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 ATGTGGCTACAGTAAATAATTTAGCAATAATGCTCATTTGTAAGAAAATC chr5A_1302 -------------------------------------------------- chr5D_1323 -----------------------------ATACTCATTTGTAAGAAAATC chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 AAGTGGCTAAATTAAACAATTTAGCAATAATAATTATTTATAAGCAAATC chr5A_1369 ATGTGGCTACAGTAAATAATTTAGCAATAATGCTCATTTGTAAGAAAATC chr4A_1586 AAGTGGCTGT---------------AATAATAATTATTTATAAGTAAATC chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 AAGAACTGGGTCTTTGAGGGGGGCCTAGACAAAAACAAACATGTA--GAA chr5D_1_TraesCS5D01G005200 AAGAACTGGGTCTTTGAGGGGGGCCTAGACAAAAACAAACATGTA--GAA chr5A_291 AAGAACTGGGTCT-------------AGACAAAAACAAACATCTA--GAA chr4A_291 AAGAACTGGGTCT-------------AGACAAAAACAAACATCTA--GAA chr4A_793 AAGAACTGGGTCT-------------AGACAAAAACAAACATCTA--GAA chr5B_943 ATGAACTGGGTCTTTGATGGGG-CCTAGACAAAAACAAACATGTA--GAA chr5A_957 ATGAACTGGGTCTTTGATGGGG-CCTAGACAAAAATAAACATGTATAGAA chr3B_1299 AAGAACTAGATCTTTGATGGGG-CCTAGATAGGAAGAAACAAGTA--GAA chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 AAGAACTAGATCTTTGATGGGG-CCTAGATAGGAAGAAACAAGTA--GAA chr5A_1302 -------------------------------------------------- chr5D_1323 AAGAACTAGATCTTTGATGGGG-CCTAGATAGGAAGAAACAAGTA--GAA chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 AAGAACTGAA-----------------------AATAAACAAGTA--GGA chr5A_1369 AAGAACTAGATCTTTGATGGGG-CCTAGATAGGAAGAAACAAGTA--GAA chr4A_1586 AAGAACTAGA-----------------------AATAAACAAGTG--GGA chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -----------------S----S--------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 CCACGCTGAGATGCTGAGAGTAC-AAAATGGATTACGATGACAACTAGTT chr5D_1_TraesCS5D01G005200 CCACGCTGAGATGCTGAGAGTAC-AAAATGGATTACGATGACAACTAGTT chr5A_291 CCACGCTGAGATGCTGAGAGTAC-AAAATGGATTATGATGACAACTAGTT chr4A_291 CCACGCTGAGATGCTGAGAGTAC-AA-ATGGATTATGATGACAACTAGTT chr4A_793 CCACGCTGAGATGCTGAGAGTAC-AA-ATGGATTATGATGACAACTAGTT chr5B_943 TCACACTGAGATGCT-AGAGTACAAA-ATGGATTATGATGACAACTAGTT chr5A_957 CCACGCTGAGATGCTGAGAGTACAAA-ATGGATTATGATGACAACTAGTT chr3B_1299 CG--------GCGCTGAGAGTGCAAA-ATGTG------------------ chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 CG--------GCGCTGAGAGTGCAAA-ATGTG------------------ chr5A_1302 -------------------------------------------------- chr5D_1323 CG--------GCGCTGAGAGTGCAAA-ATGTG------------------ chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 CC--------ATGCTGAGACTACAAA-ATGGTTCATGATGACAATTATAT chr5A_1369 CG--------GCGCTGAGAGTGCAAA-ATGTG------------------ chr4A_1586 CC--------GCAGCGAGACTACAAA-ATGGTTCATGATGACAACTATTT chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -----------------------------------S-------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 ATAAGAAGGG------------------TTCTGCTTTGCATGTCCTTAGC chr5D_1_TraesCS5D01G005200 ATAAGAAGGG------------------TTCTGCTTTGCATGTCCTTAGC chr5A_291 ATAAGAAGGG------------------TTCTGCTTTG-ATGTCCTTAGC chr4A_291 ATAAGAAGGG------------------TTCTGCTTTG-ATGTCCTTAGC chr4A_793 ATAAGAAGGG------------------TTCTGCTTTG-ATGTCCTTAGC chr5B_943 ATAAGAAGGC------------------TTCTGCTTTGCATGTGCTTGGC chr5A_957 ATAAGAAGGG------------------TTTTGCTTTGCATGTCCTTGGC chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 ATAATAAGGAACTGATAAGGCATTATAATTCCGATTCATATGTCTTCAGC chr5A_1369 -------------------------------------------------- chr4A_1586 ATAAGAAGGAACTGATAAGACTTTATAATTCTGCTTCGCATGTCTTTAGC chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 CAAGTTCTAGAGTAAAGTTTAATGGAAAAC---TATGTTTTAGGCTTT-T chr5D_1_TraesCS5D01G005200 CAAGTTCTAGAGTAAAGTTTAATGGAAAAC---TATGTTTTAGGCTTT-T chr5A_291 CAAGTTCTAGAGTAAAGTTTAATGGAAAAAAAATATGTTTTAGGCTTT-T chr4A_291 CAAGTTCTAGAGTAAAGTTTAATGGAAAAAAA-TATGTTTAAGGCTTT-T chr4A_793 CAAGTTCTAGAGTAAAGTTTAATGGAAAAAAAATATGTTTTAGGCTTT-T chr5B_943 CAAGTTCTAGGGTAAAGTTTAATGAAAAAC---TATGTTTTAGGCTTT-G chr5A_957 CAAGTTCTACGGTAAAGTTTAATGGAAAAC---TATGTTTTAGGCTTT-T chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 CAAATTGTAGTGTAAAGTTAAATGGAAATC---TATGCTTTAGGTTCTCT chr5A_1369 -------------------------------------------------- chr4A_1586 CAAATTGTAGAGTGAAGTTAAATGAAAAAC---TATGTTTTAGGTTTTCT chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 CTCTCAATTTTGATGGACAA-TTTTCCTGAAGCCATCCTTTTTCAAGGAG chr5D_1_TraesCS5D01G005200 CTCTCAATTTTGATGGACAA-TTTTCCTGAAGCCATCCTTTTTCAAGGAG chr5A_291 CTCTCAATTTTGATGGACAA-TTTTCCTGAAGCCATCTTTTTTCAAGGAG chr4A_291 CTCTCAATTTTGATGGACAA-TTTTCCTGAAGCCATCTTTTTTCAAGGAG chr4A_793 CTCTCAATTTTGATGGACAA-TTTTCCTGAAGCCATCTTTTTTCAAGGAG chr5B_943 CTCACATTTTTTATGGACAGTTTT-CCTGAAGTCATCTTTTTTCATGGGG chr5A_957 CTCTCTATTTTGATGGACAA-TTT-CCTGAAGCCATCTTTTTTCAAGGAG chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 CTCTCAATTTTGATGGACAG-TTTTCCT---------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 CTTA--------ATGGACAA-TTTTCCT---------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------S------------ forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 AGTTTCAAGTTAAACCTATGAGATATTCATGAACAAATGTATTTTGTGAT chr5D_1_TraesCS5D01G005200 AGTTTCAAGTTAAACCTATGAGATATTCATGAACAAATGTATTTTGTGAT chr5A_291 AGTTTCAAGTTAAACCTATGAGATATTCATGAACAAATGTATT------- chr4A_291 AGTTTCAAGTTAAACCTATGAGATATTCATGAACAAATGTATT------- chr4A_793 AGTTTCAAGTTAAACCTATGAGATATTCATGAACAAATGTATT------- chr5B_943 AGTTTCAAGTTAAACCTATGAGATATTTGTGAACAAATGTATTTTGTGAT chr5A_957 AGTTTCAAGTTAAACCTATGAGATATTCATTAACAAATATATTTTGTGAT chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 ----------TAAACCTAGGAGATATTCAAGTAC-----TCTTTTGTGGT chr5A_1369 -------------------------------------------------- chr4A_1586 ----------GAAACCTAGGAGATATTCAAATGTTTT----TTTTGTGGT chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 ACTCAGCCGTTCTCAG---------------------------------- chr5D_1_TraesCS5D01G005200 ACTCAGCCGTTCTCAG---------------------------------- chr5A_291 -CTCAGCCGTTCTCAGTCGTAATGAAATATGATGTACTCCCTCCGTCCCA chr4A_291 -CTCAGCCGTTCTCAGTCATAATGAAATATGATGTACTCCCTCCGTCCCA chr4A_793 -CTCAGCCGTTCTCAGTCATATTGAAATATGATGTACTCCCTCCGTCCCA chr5B_943 ACTCAATTGTTCTCAG---------------------------------- chr5A_957 ACTCAATTGTTCTCAG---------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 ACTCAAGTGTTCCTGG---------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 ACTTAGTTGTTCTCGG---------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 ---------------------------TCAAAAACGCTCTTATATTATGG chr5D_1_TraesCS5D01G005200 ---------------------------TCAAAAACGCTCTTATATTATGG chr5A_291 TAATATAAGAGCGTTTTTGAG--TGTGTCAAAAACGCTCTTATATTATGG chr4A_291 TAATATAAGAGCGTTTTTGACATTGTGTCAAAAACGCTCTTATATTATGG chr4A_793 TAATATAAGAGCGTTTTTGACATTGTGTCAAAAACGCTCTTATATTATGG chr5B_943 ---------------------------TCATAAGGAGATACTCAATT--- chr5A_957 ---------------------------TCATAATGAAATACTCAGTT--- chr3B_1299 -----------------------------------------------T-- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -----------------------------------------------T-- chr5A_1302 -------------------------------------------------- chr5D_1323 -----------------------------------------------T-- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 ---------------------------TTATATTGGAATATGATGTTT-- chr5A_1369 -----------------------------------------------T-- chr4A_1586 ---------------------------TCATATTGAAATATTATGTTT-- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 GAAGGAGGGAGTAATACTTTTACGTAATATCATGAAAATCCCTCTTT-A- chr5D_1_TraesCS5D01G005200 GAAGGAGGGAGTAATACTTTTACGTAATATCATGAAAATCCCTCTTT-A- chr5A_291 GACGGAGGGAGTAATTCTTTTACATAATATCATGAAAGTCCCTCTTT-A- chr4A_291 GACGGAGGGAGTAATTCTTTTACATAATATCATGAAAGTCCCTCTTT-A- chr4A_793 GACGGGGGGAGTAATTCTTTTACATAATATCATGAAAGTCCCTCTTT-A- chr5B_943 --------------------------------AATT---CCCTCTACTAT chr5A_957 --------------------------------AATC---CCCTCTACTAT chr3B_1299 --------------TACTTTTACGTAATACCAAATC---CCCTCTATGA- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 --------------TACTTTTACGTAATATCAAATC---CACTCTATGA- chr5A_1302 -------------------------------------------------- chr5D_1323 --------------TACTTTTACGTAATATCAAATC---CCCTCTATGA- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 --------------TACTTCTACGTAATGTCATGAAAACCCGTCTTTGA- chr5A_1369 --------------TACTTTTACGTAATATCAAATC---CCCTCTATGA- chr4A_1586 --------------TACTT-TACGTAATATCATGAAAAACCGTCTTTTA- chr5A_3087 --------------TACTT-TACGTAATATCATGAAAAACCGTCTTTTA- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs --S----------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 ----------------GCATTTGTCAACTATTATGAATGATCCA------ chr5D_1_TraesCS5D01G005200 ----------------GCATTTGTCAACTATTATGAATGATCCA------ chr5A_291 ----------------GCATTTGTCAACTACTATGAATGATTCA------ chr4A_291 ----------------GCATTTGTCAACTACTATGAATGACTCA------ chr4A_793 ----------------GCATTTGTCAACTACTATGAATGACTCA------ chr5B_943 TTTGTGATACTCAAATACATTTGTCAACTACTATGAATGATTCA------ chr5A_957 TTTGTGATACTCAAATGCATTTGTCAACTACTATGAATGATTCA------ chr3B_1299 ----------------GTTTTTGTCAACTACTATGAACGATTCA------ chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 ----------------GTTTTTGTCAACTACTATGAACGATTCA------ chr5A_1302 -------------------------------------------------- chr5D_1323 ----------------GTTTTTGTCAACTACTATGAACGATTCA------ chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 ----------------GCATTTTTCAACTACAATGAATGATTCA------ chr5A_1369 ----------------GTTTTTGTCAACTACTATGAACGATTCA------ chr4A_1586 ----------------GCATTTTTCAACTACTGTGAATGATCCAAAGAAT chr5A_3087 ----------------GCATTTTTCAACTACTGTGAATGATCCAAAGGCT chr5B_3137 --------------------------------ATGAATGATTCC------ chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs ------------------------------S------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 ------TCCCCGTTGGGCCTTTC-TGAAGCCTAT--TTGAATCAAAATAA chr5D_1_TraesCS5D01G005200 ------TCCCCGTTGGGCCTTTC-TGAAGCCTAT--TTGAATCAAAATAA chr5A_291 ------TCCCCGTTGGGCCTTTC-TAAAGTCTAT--TTGAATCAAT-TAA chr4A_291 ------TCCCCTTTGGGCCTTTC-TAAAGTCTAT--TTGAATCAAT-TAA chr4A_793 ------TCCCCTTTGGGCCTTTC-TAAAGTCTAT--TTGAATCAAT-TAA chr5B_943 ------TCCCCGTTGGGCCTTTC-TAAACTCTAT--TTGAATCAAAATAA chr5A_957 ------TCCCCGTTGGACCTTTC-TGAACTCTATTTTTGACTCAAAATAA chr3B_1299 ------TCCCTGTTGGGCCTTTC-TGAACTCTAT--TTGAATCAAAATAT chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 ------TCCCTGTTGGGCCTTTC-TGAACTCTAT--TTGAATCAAAATAT chr5A_1302 --------------------TTC-TGAACTCTAT--TTGAATCAAAATAT chr5D_1323 ------TCCCTGTTGGGCCTTTC-TGAACTCTAT--TTGAATCAAAATAT chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 ------TCCCCTTTGGGCC-TTTTTGAACTTTAT--TTGTATCAAAATAT chr5A_1369 ------TCCCTGTTGGGCC-TTC-TGAACTCTAT--TTGAATCAAAATAT chr4A_1586 GATTCCTCCCCTTAGGGTC-TTTTTGAGCTTTAT--TTGAATCAAAATAG chr5A_3087 TTGTTGTCCCCTTAGGGTC-TTTTTGAGCTTTAT--TCGAATCAAAATAG chr5B_3137 ------TCCCCTTTGGGTC-TTTTTGAGCTCTAT--TTGAATCAAAATAG chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -----------------------------S-------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -----------CGTTGGGCCTTTCTGAAGC-------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 TTGGTTATTGT--------------------------------------- chr5D_1_TraesCS5D01G005200 TTGGTTATTGT--------------------------------------- chr5A_291 TTGGTTATTGT--------------------------------------- chr4A_291 TTGGTTATTGT--------------------------------------- chr4A_793 TTGGTTATTGT--------------------------------------- chr5B_943 TTGGTTATTGT--------------------------------------- chr5A_957 TTGGTTATTGT--------------------------------------- chr3B_1299 TTAATTATTAT--------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 TTGATTATTGT--------------------------------------- chr5A_1302 TTGATTATTGT--------------------------------------- chr5D_1323 TTGATTATTGT--------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 TTGTTGACCGTTAGATAGAAGTTGGATTCCACTAAAGATGACTTATTTTG chr5A_1369 TTGATTATTGT--------------------------------------- chr4A_1586 TTTGTTACC----------------------------------------- chr5A_3087 TTTGTTACCG---------------------------------------- chr5B_3137 TTGGTTACCGT--------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------TGTGTTT chr5D_1_TraesCS5D01G005200 -------------------------------------------TGTGTTT chr5A_291 -------------------------------------------TGTGTTT chr4A_291 -------------------------------------------TGTGTTT chr4A_793 -------------------------------------------TGTGTTT chr5B_943 -------------------------------------------TGTTTTT chr5A_957 -------------------------------------------TGTTTTT chr3B_1299 -------------------------------------------TGATTTT chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------TGATTTT chr5A_1302 -------------------------------------------TGATTTT chr5D_1323 -------------------------------------------TGATTTT chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 AAAGGATTACTTACTCTTGTATACCTTTCTCAAAATATGTTGAT--TTTT chr5A_1369 -------------------------------------------TGATTTT chr4A_1586 -------------------------------------------T--TTTT chr5A_3087 -------------------------------------------T--TTTT chr5B_3137 -------------------------------------------T--TTTT chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 T-TTGACATGTTAAGATAGAAGCTCAATTCCACCAAA-GATTGCTTACTC chr5D_1_TraesCS5D01G005200 T-TTGACATGTTAAGATAGAAGCTCAATTCCACCAAA-GATTGCTTACTC chr5A_291 T-TTGACATGTTAAGATAGAAGCTCGATTCCACCAAA-GATTGCTTACTC chr4A_291 T-TTGACATGTTAAGATAGAAGCTCGATTCCACCAAA-GATTGCTTACTC chr4A_793 T-TTGACATGTTAAGATAGAAGCTCGATTCCACCAAA-GATTGCTTACTC chr5B_943 TCTTGACACGTTAAGATAGAAGCTCGATTCCACCAAA-GGTTGCTTATTT chr5A_957 TCTTGACATGCTAAGATAGAAGCTCGATTCCACCAAT-GTTTGCTTATTT chr3B_1299 TCTAACACG--TTAGATGGAAGCCTGGTTCCACCAAA-G----------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 T-TAACATG--TTAGATGGAAGCCTGGTTCCACCAAA-G----------- chr5A_1302 T-TAACATG--TTAGATGGAAGCCTGGTTCCACCAAA-G----------- chr5D_1323 TTTAACACG--TTAGATGGAAGCCTGGTTCCACCAAA-G----------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 T-TAACATG--TTAAATAAAAGTTGAGTTCCACCAAATGTTTGCTTATTT chr5A_1369 T-TAACATG--TTAGATGGAAGCCTGGTTCCACCAAA-G----------- chr4A_1586 T-TAACATG--TTAGATAGAAGTTGAATTCCACCAAA-G----------- chr5A_3087 T-TAACATG--TTAGATAGAAGTTGAATTCCACCAAA-G----------- chr5B_3137 T-TAACATG--TTAGATAGAAGCTGAATTCCACAAAA-G----------- chr4A_3219 ------------AAGATAGAAGTTGGATTCTACTAAA-G----------- chr5B_3237 ------------------------------CACCAAA-G----------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 TGAAAGTTTTGTTCTTGC-CCCTGTATACCTTGCTTGAAATACATTAA-- chr5D_1_TraesCS5D01G005200 TGAAAGTTTTGTTCTTGC-CCCTGTATACCTTGCTTGAAATACATTAA-- chr5A_291 TGAAAGTGTTATACTTGCGCCCTGTATACCTTGCTTGAAATATATTAA-- chr4A_291 TGAAAGTGTTATACTTGCGCCTTGTATACCTTTCTTGAAATATATTAA-- chr4A_793 TGAAAGTGTTATACTTGCGCCTTGTATACCTTTCTTGAAATATATTAA-- chr5B_943 TGAAAATGTTA--CTTGC-CCATGTATACCTTGCTTGAAATATACTAA-- chr5A_957 TGAAAATGTTA--CTTGC-CCATGTATACCTTGCTTAAAATATTCTAA-- chr3B_1299 ---------------------------------------ATATGTTGA-- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 ---------------------------------------ATATGTTAAAT chr5A_1302 ---------------------------------------ATATGTTAAAT chr5D_1323 ---------------------------------------ATATGTTAAAT chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 CGAGAAGTTTA--CA----------------------------------- chr5A_1369 ---------------------------------------ATATGTTAAAT chr4A_1586 ---------------------------------------ATTGCTTATCG chr5A_3087 ---------------------------------------ATTGCTTATCG chr5B_3137 ---------------------------------------ACTGCTTATTG chr4A_3219 ---------------------------------------ATGGCTTATTT chr5B_3237 ---------------------------------------ATTGCTTATTT chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs ----------S-S-----------------------------S------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 ------------TCTTGCCCCTGTATACCTTGC----------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -ATGAT-------------------------------------------- chr5D_1_TraesCS5D01G005200 -ATGAT-------------------------------------------- chr5A_291 -ATGAT-------------------------------------------- chr4A_291 -ATGAT-------------------------------------------- chr4A_793 -ATGAT-------------------------------------------- chr5B_943 -ATGAT-------------------------------------------- chr5A_957 -ATGAT-------------------------------------------- chr3B_1299 -AGGAT-------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 GATGAT-------------------------------------------- chr5A_1302 GATGAT-------------------------------------------- chr5D_1323 G---AT-------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 --------------ACTCCTGTA--------TACCTTGCTCGAAATATGT chr5A_1369 GATGAT-------------------------------------------- chr4A_1586 TGGAAGGGTTACTTACTCCTGTA--------TACCTGGCTCGAAATATGT chr5A_3087 TGGAAGGGTTACTTACTCCTGTA--------TACCTGGCTCGAAATATGT chr5B_3137 TGGAAGGGTTACTTACTCCTGTA--------TACCTGGCTCGAAATATGT chr4A_3219 TTGAAAGGTTACT--------TACTCATGTCTACCTTGCTCGAAATATGT chr5B_3237 TGAAAGGTTTTGT--------TA--------TACCTTGCTCGAAATATGT chr5A_3303 -ATGAT-------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 TGATTTTTTTTAACATGTTAGATAGAAACACTAAAGATTGCTTATTTTGA chr5A_1369 -------------------------------------------------- chr4A_1586 T------------------------------------------------- chr5A_3087 T------------------------------------------------- chr5B_3137 T------------------------------------------------- chr4A_3219 T------------------------------------------------- chr5B_3237 T------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------TATCTGA chr5D_1_TraesCS5D01G005200 -------------------------------------------TATCTGA chr5A_291 -------------------------------------------TATCTGA chr4A_291 -------------------------------------------TATCTGA chr4A_793 -------------------------------------------TATCTGA chr5B_943 -------------------------------------------TATCTGA chr5A_957 -------------------------------------------TATCTGG chr3B_1299 -------------------------------------------TATCTGA chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------TATCTGA chr5A_1302 -------------------------------------------TATCTGA chr5D_1323 -------------------------------------------TATCTGA chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 AAGGTTTCGACGATATACCTTGCTCGAAATATGTTAAAA-TGGTGTCTGA chr5A_1369 -------------------------------------------TATCTGA chr4A_1586 ------------------------------------AAA-TGGTGTCTGA chr5A_3087 ------------------------------------AAA-TGGTGTCTGA chr5B_3137 ------------------------------------AAA-TGGTGTCTGA chr4A_3219 ------------------------------------AAA-CGGTATCTGA chr5B_3237 ------------------------------------AAAATGGTGTCTGA chr5A_3303 -------------------------------------------TATCTGA chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 TTTGATGTAGGCATTTCGCCCGGCCCCATCTTGGAATGACGTTTAAGGCC chr5D_1_TraesCS5D01G005200 TTTGATGTAGGCATTTCGCCCGGCCCCATCTTGGAATGACGTTTAAGGCC chr5A_291 TTTGATGTAGGCATTTCGCCCGGCCCCATCTTGGAATGACGTTTAACGCC chr4A_291 TTTGATGTAGGCATTTCGCCCGGCCCCATCTTGGAATGACGTTTAAGGCC chr4A_793 TTTGATGTAGGCATTTCGCCCGGCCCCATCTTGGAATGACGTTTAAGGCC chr5B_943 TTTGATGTAGGCATTTTGCCTGGCCCCATCTTGGAATGGCGTTTAAGGCC chr5A_957 TTTGATGTAGGCATTTCGCCTGGCCCCAACTTGGAATGACGTTTAAGGCC chr3B_1299 TTTGATGTAGGCACATCGCCCGGCCTCATCTTGGAATGATGTTTAAGGAC chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 TTTGATGTAGGCACATCGCCCGGCCTCATCTTGGAATGATGTTTAAGGAC chr5A_1302 TTTGATGTAGGCACATCGCCCGGCCTCATCTTGGAATGATGTTTAAGGAC chr5D_1323 TTTGACGTAGGCACATCGCCCGGCCTCATCTTGGAATGATGTTTAAGGAC chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 TTTGGTGTAGGTGCATCGCCCGGCCCCATCTTGGGATGATGTTTCAAGCC chr5A_1369 TTTGATGTAGGCACATCGCCCGGCCTCATCTTGGAATGATGTTTAAGGAC chr4A_1586 TTTGGCGCAGGTACATCGCTCGGCCCCATCTTGGGATGATGTTTGAGGCC chr5A_3087 TTTGGTGCAGGTTCATCGCTCGGCCCCATCTTGGGATGATGTTTGAGGCC chr5B_3137 TTTGGCGCAGGTACATCGCTCGGCCCCATCTTGGGATGACGTTTGAGGCC chr4A_3219 TTTGGTGTAGGTACATCGCTCGGCCCCATCTTGGGATGACGTTTAAGGCC chr5B_3237 TTTGGTGTAGGTGCATCGCCCGGCCCCATCTTGGGATGATGTTTCAAGCC chr5A_3303 TTTGATGTAGGCACATCGCCCGGCCTCATCTTGGAATGATGTTTAAGGAC chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 ATCGAACTTCTAGAACCTGCTCATGTTGACATGTTATGGCGTATGTATAA chr5D_1_TraesCS5D01G005200 ATCGAACTTCTAGAACCTGCTCATGTTGACATGTTATGGCGTATGTATAA chr5A_291 ATCGAACTTCTAGAACCTTCTCATGTTGACATGTTATGGCGTATGTATAA chr4A_291 ATCGAACTTCTAGAACCTTCTCATGTTGACATGTTATGGCGTATGTATAA chr4A_793 ATCGAACTTCTAGAACCTTCTCATGTTGACATGTTATGGCGTATGTATAA chr5B_943 ATCGAACTTCTAGAACCTGCTCATATTGACATGTTGTGGCGTATGTATGA chr5A_957 ATCGAACTTCTAGAACCTGCTCATGCTGACATGTTATGGCATATGTTTAA chr3B_1299 ATCAAACTTCTAGAACCTGCTCATGTTGACATGTTATGGCGTAAGTTTAA chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 ATCAAACTTCTAGAACCTGCTCATGTTGACATGTTATGGCGTATGTTTAA chr5A_1302 ATCAAACTTCTAGAACCTGCTCATGTTGACATGTTATGGCGTATGTTTAA chr5D_1323 ATCAAACTTCTAGAACCTGCTCATGTTGACATGTTATGGCGTAAGTTTAA chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 ATCAAGCTTCTAGAACCTGCTCATGTTGACATGTTATGGCGTATGTATAA chr5A_1369 ATCAAACTTCTAGAACCTGCTCATGTTGACATGTTATGGCGTATGTTTAA chr4A_1586 ATCAAGCATCTAGAGCCTGCTCATGTTGACATGTTATGGCGTATGTATAA chr5A_3087 ATCAAGCATCTAGAGCCTGCTCATGTTGACATGTTATGGCGTATGTATAA chr5B_3137 ATCAAGCTTCTAGAGCCTGCTCATGTTGATATGTTATGGCGTATGTATAA chr4A_3219 GTCAAGCTTCTACAGCCTGCTCATGTTGACATGTTATGGCGCATGTGTAA chr5B_3237 ATCAAGCTTCTAGAACCTGCTCATGTTGACATGTTATGGCGAATGTATAA chr5A_3303 ATCAAACTTCTAGAACCTGCTCATGTTGACATGTTATGGCGTATGTTTAA chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 CATTGATGACGGTCTTGTTGTTCAAGAGGTAGGGT--AATGATTTCCTCG chr5D_1_TraesCS5D01G005200 CATTGATGACGGTCTTGTTGTTCAAGAGGTAGGGT--AATGATTTCCTCG chr5A_291 CATTGATGACGGTCTTGTCGTTCAAGAGGTAGGGTGTAATGATTTCCTCG chr4A_291 CATTGATGACGGTCTTGTTGTTCAAGAGGTAGGGT--AATTATTTCCTCG chr4A_793 CATTGATGACGGTCTTGTTGTTCAAGAGGTAGGGT--AATTATTTCCTCG chr5B_943 CATTGATGACGGCCTTG--------------------------------- chr5A_957 CATTGATGACGGTCTTGTTGTTCAAGAGGTAGGGT--AATGACTTCATGG chr3B_1299 CATTGATGATGGTCTTATTGTTGAAGAGGTAGG-T--AATGACTTCCTGA chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 CATTGATGATGGTCTTATTGTTCAAGAGGTAGG-T--AATGACTTCCTGA chr5A_1302 CATTGATGATGGTCTTATTGTTCAAGAGGTAGG-T--AATGACTTCCTGA chr5D_1323 CATTGATGATGGTCTTATTGTTCAAGAGGTAGG-T--AATGACTTCCTGA chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 CATTGATCATGGTCTTATTGTTCAAGAGGAATG-T--AATGGCTTCTTGA chr5A_1369 CATTGATGATGGTCTTATTGTTCAAGAGGTAGG-T--AATGACTTCCTGA chr4A_1586 CATTGATCATGGTCTTATTGTTCAAGAGGTATG-T--AATGGCTTCCTGA chr5A_3087 CATTGATCATGGTCTTATTGTTCAAGAGGTATG-T--AATGGCTTCCTGA chr5B_3137 CATTGATCATGGTCTTATTGTTCAAGAGGTATG-T--AATGGCTTCCTGA chr4A_3219 CATTGATGACGGTCTTGTTGTTCAGGAGGTATA-T--AACGCCTTCCTCA chr5B_3237 CATTGATCATGGTCTTATTGTTCAAGAGGTATG-T--AATGGCTTCCTGA chr5A_3303 CATTGATGATGGTCTTATTGTTCAAGAGGTAGG-T--AATGACTTCCTGA chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 AGGTGCTCTATTTCTCATGTATGTAGTGGTTAATTATTTGGCAATTGAAC chr5D_1_TraesCS5D01G005200 AGGTGCTCTATTTCTCATGTATGTAGTGGTTAATTATTTGGCAATTGAAC chr5A_291 AGGTGCTCTATTTCTCATGCATGTAGTGGTTAATTATTTGGCAACTGAAA chr4A_291 AGGTGCTCTATTTCTCATGCATGTAGTGGTTAATTATTTGGCAATTGAAA chr4A_793 AGGTGCTCTATTTCTCATGCATGTAGTGGTTAATTATTTGGCAATTGAAA chr5B_943 --GTGCTCAATTTCTCATGCATGTAGTGGTTAATTATTTGGCAATTGAAC chr5A_957 AGGTGCTCAATTTCTCATGCATGTAGTGGTTAATTATTTGGCAATTGAAC chr3B_1299 AAGTGCTCAATTTCTCATCTGTGTAAA-GTTAA-TTATTGACGTTTGAAC chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 AAGTGCTCAATTTCTCATCTGTGTAAAGGTTAA-TTATTGACATTTGAAC chr5A_1302 AAGTGCTCAATTTCTCATCTGTGTAAAGGTTTA-TTATTGACATTTGAAC chr5D_1323 AAGTGCCCAATTTCTCATCTGTGTAAA-GTTAA-TTATTGACGTTTGAAC chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 AGGTGACCCTTTTCCCATGTGTATATGGTATAATTGTTTGGCAATTGAAC chr5A_1369 AAGTGCTCAATTTCTCATCTGTGTAAAGGTTTA-TTATTGACATTTGAAC chr4A_1586 AGGTGCTCTTTTTCCCATGTGTATATGGTATAACTATTTGGCAATTGAAC chr5A_3087 AGGTGCTCTTTTTCCCATGTGTATATGGTATAACTATTTGGCAATTGAAC chr5B_3137 AGGTGCTCTTTTTCCCATGTGTATATGGTATAACTATTTGGCAATTGAAC chr4A_3219 AAGTGCTATTTTTCCCATGCGTATATGGTTTAATTATTTGGCAATTGAAC chr5B_3237 AGGTGCTCTTTTTCCCATGTGTATATGGTATAATTGTTTGGCAATTGAAC chr5A_3303 AAGTGCTCAATTTCTCATCTGTGTAAAGGTTAATTATT-GACATTTGAAC chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 CCTAGGTGTCGAAAGGATCTAATGCTGAGATACTCGGAGTCCAAAAAGGT chr5D_1_TraesCS5D01G005200 CCTAGGTGTCGAAAGGATCTAATGCTGAGATACTCGGAGTCCAAAAAGGT chr5A_291 CCTAGGTGTCAAAAGGATCTAATGCTGAGATACTCGGAATCCAAAAAGGT chr4A_291 CCTAGGTGTCAAAAGGATCTAATGCTGAGATACTCGGAATCCAAAAAGGT chr4A_793 CCTAGGTGTCAAAAGGATCTAATGCTGAGATACTCGGAATCCAAAAAGGT chr5B_943 CCTAGGTGTCAAAGGGATCTAATGCTGAGACACTCGGAATCCAAAAAGGT chr5A_957 CCTGGGTGTCAAAGGGATCTAATGCTGAGATACTCGGAATCCAAAAAGGT chr3B_1299 CTTAGGTGTCGGGAGGATCTCCTGCTGAGAAATTTGGAATCCAAAAAGGT chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 ATTAGGTGTCGGGAGGGTCGCCTGCTGAGAAATTTGGAATCCAAAAAGGT chr5A_1302 ATTAGGTGCCGGGAGGGTCGCCTGCTGAGAAATTTGGAATCCAAAAAGGT chr5D_1323 CTTAGGTGTCGGGAGGATCTCCTGCTGAGAAATTTGGAATCCAAGAAGGT chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 CCTAGGTGTCGAAAGGATCTAATGCTGAGATACTCGGAATCCAAAAAGGT chr5A_1369 ATTAGGTGCCGGGAGGGTCGCCTGCTGAGAAATTTGGAATCCAAAAAGGT chr4A_1586 CCTAGGTGTCGAAAGGATCTAATGCTGAGATACTCGGAATCCAAAAAGGT chr5A_3087 CCTAGGTGTCGAAAGGATCTAATGCTGAGATACTCGGAATCCAAAAAGGT chr5B_3137 CCTAGGTGTCGAAAGGATCTAATGCTGAGATACTCGGAATCCAAAAAGGT chr4A_3219 CTTAGGTGTCTAAAGGATCTAATGCTGAGATACTCGGAATCCAAGAAGGT chr5B_3237 CCTAGGTGTCGAAAGGATCTAATGCTGAGATACTCGGAATCCAAAAAGGT chr5A_3303 ATTAGGTGTCGGGAGGGTCGCCTGCTGAGAAATTTGGAATCCAAAAAGGT chr5B_4221 -------------------------------------------------- SNPs --------------------------------------S----------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 GATGTTATTGAATCTATCAACGGAAAACGTGTTTCTACCACAATTGAGGT chr5D_1_TraesCS5D01G005200 GATGTTATTGAATCTATCAACGGAAAACGTGTTTCTACCACAATTGAGGT chr5A_291 GATGTTATTGAATCTATCAATGGGAAACGTGTTTCTACAACAATTGAGGT chr4A_291 GATGTTATTGAATCTATCAATGGAAAACGTGTTTCTACAACAATTCAGGT chr4A_793 GATGTTATTGAATCTATCAATGGAAAACGTGTTTCTACAACAATTGAGGT chr5B_943 GATGTTATTGAATCTATCAATGGAAAGCATGTTTTTACCACAATTGAGGT chr5A_957 GATTTTATTGAATCTATCAATGGAAAACGTATTTCTACCACAATTGAGGT chr3B_1299 GATATTATTGAATCTTTCAGTGGAAAGCCTGTTTCTTCCACAATTGAGGT chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 GATATTATCGAATCTTTCAATGGAAAGCATGTTTCTTCCACAATTGAGGT chr5A_1302 GATATTATCGAATCTTTCAATGGAAAGCCTGTTTCTTCCACAATTGAGGT chr5D_1323 GATATTATTGAATCTTTCAGTGGAAAGCCTGTTTCTTCCACAATTGAGGT chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 GATGCTATTGAATCTATCAATGGAAAACCTGTTTCTACCACAATCGAGGT chr5A_1369 GATATTATCGAATCTTTCAATGGAAAGCCTGTTTCTTCCACAATTGAGGT chr4A_1586 GATGTTATTGAATCTATCAATGGAAAACCTGTTTCTACCACAATTGAGGT chr5A_3087 GATGTTATTGAATCTATCAATGGAAAACCTGTTTCTACCACAATTGAGGT chr5B_3137 GATGTTATTGAATCTATCAATGGAAAACCTGTTTCTACCACAATTGAGGT chr4A_3219 GATCTTATTGAATGTATGAATGGAAAATGCATTTCTACCACAATTGAGGT chr5B_3237 GATGTTATTGAATCTATCAATGGAAAACCTGTTTCTACCACAATCGAGGT chr5A_3303 GATATTATCGAATCTTTCAATGGAAAGCCTGTTTCTTCCACAATTGAGGT chr5B_4221 -------------------------------------------------- SNPs --------------------S----------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 GGGTGTATTA-----------------ATGAGGTGAAAATAAGTTATATT chr5D_1_TraesCS5D01G005200 GGGTGTATTA-----------------ATGAGGTGAAAATAAGTTATATT chr5A_291 GGGTGTATTA-----------------ATGAGGTGAAAATAAATTATATT chr4A_291 GGGTGTATTA-----------------ATGAGGTGAAAATAAATTATATT chr4A_793 GGGTGTATTA-----------------ATGAGGTGAAAATAAATTATATT chr5B_943 GGGTGTATTA-----------------ATGAGCTGAAAATAAATTACATG chr5A_957 GGGTGTATTA-----------------ATGAGCTGAAAAGAAATTACATG chr3B_1299 GAGTGAATTAGAGATTT-GTTAGGTAAACGAATTGAAAATAAATTTCATT chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 GAGTGAATTAGAGATTT-GTTAGGTAAACAAATTGAAAATAAATTTAATT chr5A_1302 GAGTGAATTAGAGATTT-GTTAGGTAAACAAACTGAAAATAAATTTAATT chr5D_1323 GAGTGAATTAGAGAGTT-GTTAGGTAAACGAACTGAAAATAAATTTCATT chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 GGGTGTAATAGAGATTT-GTTAGGTTAATGAGTTGAAAATAAATTACATT chr5A_1369 GAGTGAATTAGAGATTT-GTTAGGTAAACAAACTGAAAATAAATTTAATT chr4A_1586 GGGTGTATTAGAGATTTTATTAGGTTAATGAGTTGAAAATAAATTACATT chr5A_3087 GGGTGTATTAGAGATTTTGTTAGGTTAGTGAGTTGAAAATAAATTACATT chr5B_3137 GGGTGTATTAGGATTTT-GTTAGGTTAATGAGTTGAAAATAAATTACATT chr4A_3219 GGGTGTATTAGGTATTT-GTTAGGTTAATAAAGTGAAAATAAATTATATT chr5B_3237 TGGTGTATTAGAGATTT-GTTAGGTTAATGAGTTGAAAATAAATTACATT chr5A_3303 GAGTGAATTAGAGATTT-GTTAGGTAAACAAACTGAAAATAAATTTAATT chr5B_4221 -------------------------------------------------- SNPs ------------------------------------------S------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 T-GTGTGA------------------------------------------ chr5D_1_TraesCS5D01G005200 T-GTGTGA------------------------------------------ chr5A_291 T-TTGTGA------------------------------------------ chr4A_291 T-TTGTGA------------------------------------------ chr4A_793 T-TTGTGA------------------------------------------ chr5B_943 C---GTGA------------------------------------------ chr5A_957 C---GCGA------------------------------------------ chr3B_1299 T-CTGTGA------------------------------------------ chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 T-GTGTGA------------------------------------------ chr5A_1302 T-GTGTGA------------------------------------------ chr5D_1323 T-GTGTGA------------------------------------------ chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 T-GTGTGA------------------------------------------ chr5A_1369 T-GTGTGA------------------------------------------ chr4A_1586 TTGTGTGA------------------------------------------ chr5A_3087 T-GTGTGA------------------------------------------ chr5B_3137 T-GTGTGA------------------------------------------ chr4A_3219 T-CTGTGA------------------------------------------ chr5B_3237 T-GTGTGGTACTCCCTCCGTTCCAAAATAGATGACTCAACTTTGTATTAA chr5A_3303 T-GTGTGA------------------------------------------ chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 ------------------------------------------TAGTTGTT chr5D_1_TraesCS5D01G005200 ------------------------------------------TAGTTGTT chr5A_291 ------------------------------------------TAGTTGTT chr4A_291 ------------------------------------------TAGTTGTT chr4A_793 ------------------------------------------TAGTTGTT chr5B_943 ------------------------------------------TAGTTGGT chr5A_957 ------------------------------------------TAGTTGGT chr3B_1299 ------------------------------------------T-TTTAGT chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 ------------------------------------------TATTTAGT chr5A_1302 ------------------------------------------TATTTAGT chr5D_1323 ------------------------------------------TATTTAGT chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 ------------------------------------------TAGTTGTT chr5A_1369 ------------------------------------------TATTTAGT chr4A_1586 ------------------------------------------TAGTTGGT chr5A_3087 ------------------------------------------TAGTTGGT chr5B_3137 ------------------------------------------TAGTTGGT chr4A_3219 ------------------------------------------TATTCGTT chr5B_3237 CTTTAGTACAAAGTTGGATCATCTATTTTGGAACGGAGGGAGTAGTTGTT chr5A_3303 ------------------------------------------TATTTAGT chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 GGCTTCACGGTCTTGACTGCAATGTTTTTTCT--CTACAATTATCAGTTC chr5D_1_TraesCS5D01G005200 GGCTTCACGGTCTTGACTGCAATGTTTTTTCT--CTACAATTATCAGTTC chr5A_291 GGCTTCACGGTCTTGACTGCAATATTTTTTCT--CTGCAATTATCAGTTC chr4A_291 GGCTTCACGGTCTTGACTGCAATGTTTTTTCT--CTGCAATTATTAGTTC chr4A_793 GGCTTCACGGTCTTGACTGCAATGTTTTTTCT--CTGCAATTATCAGTTC chr5B_943 GCCTTCATGGTCTTGACTGCAATGTTTTTTCT--ATGCAATTATTAGTTG chr5A_957 GTCTTCATGGTCTTGACTGCAATGTTTTTTAT--CTGCAATTATCAGTTG chr3B_1299 AGCTTCACGGTCTTGACTAGAATGTTTTCGTTTCCTGCAACTATCAGCTG chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 AACTTCACGGTCTTGACTAGAATGTTTTTGTTTCCTGCAATTATCAGTTG chr5A_1302 AACTTCACGGTCTTGACTAGAATGTTTTTGTTTCCTGCAATTATCAGTTG chr5D_1323 AGCTTCACGGTCTTGACTAGAATGTTTTCGTTTCCTGCAATTATCAGCTG chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 AGCTTCACGGTCTTGACTGCAATGTTTTTTCT--CTGCAATTGTCAGTTG chr5A_1369 AACTTCACGGTCTTGACTAGAATGTTTTTGTTTCCTGCAATTATCAGTTG chr4A_1586 AGCTTCACGGTCTTGACTGCAATGTTTTTTCT--CTGTAATTATCAGTTG chr5A_3087 AGCTTCACGGTCTTGAGTGCAATGTTTTTTCT--CTGTAATTATCAGTTG chr5B_3137 AGCTTCACGGCCTTGACTGCAATGTTTTTTCT--CTGTAATTATCAGTTG chr4A_3219 TGCTTCATCCTCTTGACTTCTATGTTATTTTT--CTGAAATTATCAGTTG chr5B_3237 AGCTTCACGGTCTTGACTGCAATGTTTTTTCT--TTGCAATTGTCAGTTG chr5A_3303 AACTTCACGGTCTTGACTAGAATGTTTTTGTTTCCTGCAATTATCAATTG chr5B_4221 -------------------------------------------------- SNPs ------------------------------------S------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 GAAAATATGCTGATGAGCACATGCAAGGTCCGTTCAG------------- chr5D_1_TraesCS5D01G005200 GAAAATATGCTGATGAGCACATGCAAGGTCCGTTCAG------------- chr5A_291 GAAAATATGCTGATGAGCACATGCAAGGTCCCTTCAG------------- chr4A_291 GAAAATATGCTGATGAGCACATGCAAGGTCCCTTCAG------------- chr4A_793 GAAAATATGCTTATGAGCACATGCAAGGTCCCTTCAG------------- chr5B_943 GAAAATACACTGATGAGCACATGCAAGGGCCCTTCAG------------- chr5A_957 GAAAATACGCTGATGAGCACATGCAAGGGACCTCCAG------------- chr3B_1299 GAAAATACACTGATGAGCATATACAAGGGAACCTTAG------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 GAAAATACACTGATGAGCATATACAAGGGAACTTTAG------------- chr5A_1302 GAAAATACACTGATGAGCATATACAAGGGAACTTTAG------------- chr5D_1323 GAAAATACACTGATGAGCATATACAAGGGAACCTTAG------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 GAAAATACGCTGATGATCACATGCAAGGGCACTTCAG------------- chr5A_1369 GAAAATACACTGATGAGCATATACAAGGGAACTTTAG------------- chr4A_1586 GAGAATATGCTGATGAGCACATGCAAGGGCCT------------------ chr5A_3087 GAGAATATGCTGATGAGCACATGCAAGGGCCT------------------ chr5B_3137 GAGAATATGCTGATGAGCACATGCAAGGGCCT------------------ chr4A_3219 GAAAATACGTTGATGAGCCTATGCAAAGGCCCTTCAGACAGCCAAAATGG chr5B_3237 GAAAATACGCTGATGATCACATGCAAGGGCCCTTCAG------------- chr5A_3303 GAAAATACACTGATGAGCATATACAAGGGAACTTTAG------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------S------------------ forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -----GTGCTGAAGTTCATATTTCTGTAAGTACATTTCTATATCATAACA chr5D_1_TraesCS5D01G005200 -----GTGCTGAAGTTCATATTTCTGTAAGTACATTTCTATATCATAACA chr5A_291 -----ATGTTGAAGTTCATATTTCTGTAAGTACATTTCTATATCATAACA chr4A_291 -----GTGTTGAAGTTCATATTTCTGTAAGTACATTTCTATATCATAACA chr4A_793 -----GTGTTGAAGTTCATATTTTTGTAAGTACATTTCTATATCATAACA chr5B_943 -----GTGCTGACGTTCATATTTCTGTAAGTA--------TATCATAACG chr5A_957 -----GTGCTGAAGTTCATATTTCTGTAAGT--------ATATCATAACG chr3B_1299 -----ATGCTGAAGTTCATATTTCTGTAAGTTCATTTCTATAT-ATGAGG chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -----ATGCTGAAGTTCGTATTTTTGTAAGTTCATTTCTATAT-ATGAGG chr5A_1302 -----ATGCTGAAGTTCGTATTTCTGTAAGTTCATTTCTATAT-ATGAGG chr5D_1323 -----ATGCTGAAGTTCGTATTTCTGTAAGTTCATTTGTATAT-ATGAGG chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -----GTGCTGAAGTTCATATTTCTGTAAGTTCATTTCTATATTATAACG chr5A_1369 -----ATGCTGAAGTTCGTATTTCTGTAAGTTCATTTCTATAT-ATGAGG chr4A_1586 ------TGCTGAAGTTCATATTTCTGTAAGTTCATTTCTATATTATAACG chr5A_3087 ------TGCTGAAGTTCATATTTCTGTAAGTTCATTTCTATATTATAACG chr5B_3137 ------TGCTGAAGTTCATATTTCTGTAAGTTTATTTCTATATTATAACG chr4A_3219 CCATAATGCTGAAGTTTGTATTTCTGTAAGTTCAGTTCTATCTTATAGCG chr5B_3237 -----GTGCTGAAGTTCATATTTCTGTAAGTTCATTTCTATATTATAATG chr5A_3303 -----ATGCTGAAGTTCGTATTTCTGTAAGTTCATTTCTATAT-ATGAGG chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 GCGGTTTGCTTGATCCCTGCCATCCATTTCTTTGTGCTGATGTATTATTA chr5D_1_TraesCS5D01G005200 GCGGTTTGCTTGATCCCTGCCATCCATTTCTTTGTGCTGATGTATTATTA chr5A_291 GCGGTTTGCTTGATCCCTGCCATCCATTTCTTTGTGCTGATGTATTATTA chr4A_291 GAGGTTTGCTTGATCCCTGCCATCCATTTCTTTGTGCTGATGTATTATTA chr4A_793 GCGGTTTGCTTGATCCCTGCCATCCATTTCTTTGTACTGATGTATTATTA chr5B_943 GCGGTTTGCTTGATCCCTGCCAACCATTTCTTTGTACCGATGTATTATTA chr5A_957 GTGGTTTGCTTGATCCCTGCCATCCATTTCTTTGTACCGACGTATTATGA chr3B_1299 GCGGTTTGCTTGATCCCGGCCATCCATTTATTTGTACCGAAGTATTATTA chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 GCGGTTTTCTTGATCCCGGCCATACATTTATTTGTACCGAAGTATTATTA chr5A_1302 GCGGTTTTCTTGATCCCGGCCATACATTTATTTGTACCGAAGTATTATTA chr5D_1323 GCGGTTTGCTTGATCCCGGCCATCCATTTATTTGTACCGAAGTATTATTA chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 GCGGTTTGCTTGATCACTGCCATCCATTCCTCTGTACCGAAGTATCATTA chr5A_1369 GCGGTTTTCTTGATCCCGGCCATACATTTATTTGTACCGAAGTATTATTA chr4A_1586 GCAGTTTGCTTGACCACCACCATCCATTCCTCTGTACCGAAGTATTATTA chr5A_3087 GCTGTTTGCTTGACCACCACCATCCATTCCTGTGTACCGAAGTATTATTA chr5B_3137 GCGGTTTGCTTGACCACCACCATCCATTCCTTTGTACCGCAGTATTACTA chr4A_3219 ACGGTTCGCTTGATCCCTGCCATCCATTCCTTTGTAACAAAGTGTTATCA chr5B_3237 GCGGTTTGCTTGATCACTGCCATCCATTCCTCTGTACCGAAGTATCATTA chr5A_3303 GCGGTTTTCTTGATCCCGGCCATACATTTATTTGTACCGAAGTATTATTA chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 GCAAAATGCTAGCACTAAGAGATTTGCTTCGCTAACTCCATAGGTTGGGG chr5D_1_TraesCS5D01G005200 GCAAAATGCTAGCACTAAGAGATTTGCTTCGCTAACTCCATAGGTTGGGG chr5A_291 GCAAAATGCTAGCACTAAGAGATTTGCTTCGCTAACTCCATAGGTTGGGG chr4A_291 GCAAAATGCTAGCACTAAGAGATTTGCTTCGCTAACTCCATAGGTTGGGG chr4A_793 GCAAAATGCTAGCACTAAGAGATTTGCTTCGCTAACTCCATAGGTTGGGC chr5B_943 GCAAAATGCTAGCACTAAGAGATATGTTTCGCTAACTCCATAGGTTCAGG chr5A_957 GCACAATGCTAGCACTAAGAGATATGTTTTGCTAACTCCATAGGTTGGGG chr3B_1299 GCAAAATGCTAGCTCTAAGAGATGTGTTTGGCTAACTCCATAGGTTGGGG chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 GCAAAATGCTAGCTCTAAGAGATGTGTTTGGCAAACTCCGTAGGTTGGGG chr5A_1302 ACAAAATGCTAGCTCTAAGAGATGTGTTTGGCAAACTCCGTAGGTTGGGG chr5D_1323 GCAAAATGCTAGCTCTAAGAGATGTGTTTGGCTAACTCGATAGGTTGGGG chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 GCAAG-TGCTAGCACTAAGAGATTTCCGCC-CTAACTCCATAGGTTGGGG chr5A_1369 GCAAAATGCTAGCTCTAAGAGATGTGTTTGGCAAACTCCGTAGGTTGGGG chr4A_1586 GCAAGATGCTAGTACTAAGAGATTTGTTTCGCTAACTCCATAGGTTGGGG chr5A_3087 GCAAGATGCTAGTACTAAGAGATTTGTTTTGCTAACTCCATAGGTTGGGG chr5B_3137 GCAAGATGCTAGCACTAAGAGATTTGTTTCACTAACTCCATAGGTTGGGG chr4A_3219 GCAAGATGTTAGCACTGAGAAATGTGTTATGCTAACTCCATAGATTGGGG chr5B_3237 GCAAG-TGCTAGCACTAAGAGATTTTCCCC-CTAACTCCATAGGTTGGGG chr5A_3303 GCAAAATGCTAGCTCTAAGAGATGTGTTTGGCAAACTCCGTAGGTTGGGG chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 TGTTTCACACACTCAAAAAAGAACGAAGCACCATAGAGTTGACCACAAAT chr5D_1_TraesCS5D01G005200 TGTTTCACACACTCAAAAAAGAACGAAGCACCATAGAGTTGACCACAAAT chr5A_291 TGTTTCACACACTCAAAAAAGAACGAAGCACCATAGAGTTGACTGCAAAT chr4A_291 TGTTTCACACACTCAAAAAAGAATGAAGCACCATAGAGTTGACTGCAAAT chr4A_793 TGTTTCACACACTCAAAAAAGAACGAAGCACCATAGAGTTGACTGCAAAT chr5B_943 TGTTTCACACACTCAAAAAACAACGAAGCACCATAGAGTTCACTACAAAT chr5A_957 TGTTTCACACACTCAAAAAACAACGAAGCACCGTAGAGTTGACTTTAAAA chr3B_1299 TGTTTCACACACTCGAAGAACAACGGAGCACTGTAGACTTAACTGCAAAA chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 TGTTTCACACACTCAAAGAACAATGGAGCACCATAGAGTTGACTGCAAAA chr5A_1302 TGTTTCACACACTCAAAGAACAATGGAGCACCATAGAGTTGACTGCAAAA chr5D_1323 TGTTTCACACACTCAAAGAACAACGGAGCACTGTAGACTTGACTGCAAAA chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 TGTTTCACACACTCAAAAAACAACGAAGCACCATACAGTGGACTGCAGAA chr5A_1369 TGTTTCACACACTCAAAGAACAATGGAGCACCATAGAGTTGACTGCAAAA chr4A_1586 TGTTTCACACACTCAAAGAAGAACGAAGCACCGTAGAGTTGAGTGCAAAA chr5A_3087 TGTTTCACACACTCAAAGAAGAACGAAGCACCGTACAGTTGAGTGCAAAA chr5B_3137 TGTTTCACACACTTAAAGAAGAACGAAGCACCGTAGAGTTGAGTGCAAAA chr4A_3219 TGTTTCACACACTCAAAAAATACCGAAGTACCAGAGAGTTGACTGCAAAT chr5B_3237 TGTTTCACACACTCAAAAAACAACGAAGTACTGTACAGTGGACAGCAGAA chr5A_3303 TGTTTCACACACTCAAAGAACAACGGAGCACCATAGAGTTGACTGCAAAA chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------S------ forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 TTATCCGAACTTGGAGAAGTCATTACAAGCTAG----------------- chr5D_1_TraesCS5D01G005200 TTATCCGAACTTGGAGAAGTCATTACAAGCTAGGTACACATCTCCTCTTT chr5A_291 TTATCCGAACTTGGAGAAGTCATTACAAGCTAGGTACACATCTCCTCTTT chr4A_291 TTATCCGAACTTGGAGAAGTCATTACAAGCTAGGTACACATCTCCTCTTT chr4A_793 TTATCCGAACTTGGAGAAGTCATTACAAGCTAGGTACACATCTCCTCTTT chr5B_943 TTATCAGAACTTGGAGAAGTTATTACAAGCTAGGTACACATCTCCTCTTT chr5A_957 TTATCAGAACTTGGAGAAGTTATTACAAGCTAGGTACACATCTCCTCTTT chr3B_1299 TTATCAGAACTTGGAGAGGTTATTAAAAG--AGGTACACATCTCCTCTTT chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 TTATCAGAACTTGGAGAAGTTATTACAAG--AGGTGCAAATCTCCTTTTT chr5A_1302 TTATCAGAACTTGGAGAAGTTATTACAAG--AGGTGCAAATCTCCTTTTT chr5D_1323 TTATCAGAACTTGGAGAGGTTATTACAAG--AGGTACACATCTCCTCTTT chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 TTATCAGAACTTGGAGAAGTTCTTACAAGCTAGGTACACC-CTCCTCTTT chr5A_1369 TTATCAGAACTTGGAGAAGTTATTACAAG--AGGTGCAAATCTCCTTTTT chr4A_1586 TTATCAAAACTTGGAGAAGTTATTACAAGCTAGGTACACATCTCCTCTTT chr5A_3087 TTATCAAAACTTGGAGAAGTTATTACAAGCTAGGTACACATCTCCTCTTT chr5B_3137 TTATCAAAACTTGGAGAAGTTATTACAAGCTAGGTACACGTCTCCTCTTT chr4A_3219 GTATCAGACCTTGGAGAAGTTATTGCAAG--AGGTACACGTCTCCTCTTT chr5B_3237 TTATCAGAACTTGGAGAAGTTCTTACAAGCTAGGTACACC-CTCCTCTTT chr5A_3303 TTATCAAAACTTGGAGAAGTTATTACAAG--AGGTGCAAATCTCCTTTTT chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 TAATTAGCCCCACCCACAAATTATTAT------------TTCAATTCTCT chr5A_291 TAATTAGCCCCACCCACAAATTATTAT------------TTCAATTCTCT chr4A_291 TAATTAGCCCCACCCACAAATTATTAT------------TTCAATTCTCT chr4A_793 TAATTAGCCCCACCCACAAATTATTAT------------TTCAATTCTCT chr5B_943 TAACTAGCCCAATCTGCACATTATTAT------------TTCAATTCTCT chr5A_957 TAACTAGCCCAATCTACAGATTATTAT------------TTCAATTCTCT chr3B_1299 TAACTTGCCCCATCTACAGATTATTAT------------TTCAA------ chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 TAACTAGCCCCGTCTACAGATTATTAT------------GTCAATTCTCA chr5A_1302 TAACTAGCCCCGTCTACAGATTATTAT------------GTCAATTCTCA chr5D_1323 TAACTTGCCCCATCTACAGATTATTAT------------TTCAA------ chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 TAACCAGACCCATCTACAGATTATTATCCATATTATTTTTTCAATTCTCA chr5A_1369 TAACTAGCCCCGTCTACAGATTATTAT------------GTCAATTCTCA chr4A_1586 TAACTAGCCCCGTCTACAAATTAGTATCCAGATTATTAGTTCAATTCTCA chr5A_3087 TAACTAGCCCCGTCTACAAATTAGTATCCAGATTATTAGTTCAATTCTCA chr5B_3137 TAACTAGGCCCTTCTACAAATTATTATCCAGATTATTAGTTCATTTCTCA chr4A_3219 TAACTAGTCCCATCTACAAATTATCT---AGATTATCACTTCATTCTAAA chr5B_3237 TAACTAGACCCATCTACAGATTATTATCCATATTATTTTTTCAATTCTCA chr5A_3303 TAACTAGCCCCGTCTACAGATTATTAT------------GTCAATTCTCA chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 AGTAT-TATATTCCATTTTT-T--GCAG--ATAATTATTATCCAGATACA chr5A_291 AGTAT-TATATTCCATTTTT-T--GCAG--ATAATTATTATACAGATACA chr4A_291 AGTAT-TATATTCCATTTTT-T--GCAG--ATAATTATTATCCAGATACA chr4A_793 AGTAT-TATATTCCATTTTT-T--GCAG--ATAATTATTATCCAGATACA chr5B_943 AGTATGTATATTCCATTTTA-T--GTAGATATAATTATTATCCAGATATA chr5A_957 AGTATGTATATTCCATTTTA-T--GTAGATATAATTATTATCCAGATATA chr3B_1299 ---------------------------------------ATCTAGACATA chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 AGCATGTATGTTCTATTTTT-TTTGTAC--ACACCTATTATCCAGACAGA chr5A_1302 AGCATGTATGTTCTATTTTT-TT-GTAC--ACACCTATTATCCAGACAGA chr5D_1323 ---------------------------------------ATCCAGACATA chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 AGTATGTATATTCCATTTTT-TT-GCAG--ATAATTATTATCCAGACATA chr5A_1369 AGCATGTATGTTCTATTTTT-TT-GTAC--ACACCTATTATCCAGACAGA chr4A_1586 AGTATGTATATTCCATTTTT-T--GTAG--ATAATAATTATCCAGACATA chr5A_3087 AGTATGTATATTCCATTTTT-T--GTAG--ATAATAATTATCCAGACATA chr5B_3137 AGTATGTATATTCCATTTTTTT--GTAG--ATAATAATTATCCAGACATA chr4A_3219 GGTATGTATATTCCAGTTTT-TT-GTAG--ATCGATTATATTTTAAT--- chr5B_3237 AGTATGTATATTCCATTTTT-TTTGCAG--ATAATTATTATCCAGACATA chr5A_3303 AGCATGTATGTTCTATTTTT-TT-GTAC--ACAACTATTATCCAGACAGA chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 GTGCTAGCACTAAGTATGTAAGCTTATG--------TGCGTTGTGCAATA chr5A_291 GTGCTAGCACTAAGTATGTAAGCTTATG--------TGCGTTGTGCAATA chr4A_291 GTGCTAGCACTAAGTATGTAAGCTTATG--------TGTGTTGTGCAATA chr4A_793 GTGCTAGCACTAAGTATGTAAGCTTATG--------TGCGTTGTGCAATA chr5B_943 GTGCTAGCACTAAGTATGTAAGTTTATG--------TGCATTGTGCGATA chr5A_957 GTGCTAGCACTAAGTATGCAAGTTTATG--------TGCATTGTGCGATA chr3B_1299 ATGTTATCGCTAAGTATGCAAGCTCATG--------TGCATTGTGCAATA chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 ATGCTATCACTAAGTATGCAAGCTCATG--------TGCATTGTGCAATA chr5A_1302 ATGCTATCACTAAGTATGCAAGCTCATG--------TGCATTGTGCAATA chr5D_1323 ATGCTATCGCTAAGTATGCAAGCTCATG--------TGCATTGTGCAATA chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 ATGCTAGCACTAAGTCTGTAAGCTTATG--------TC-----------A chr5A_1369 ATGCTATCACTAAGTATGCAAGCTCATG--------TGCATTGTGCAATA chr4A_1586 ATGCTAGTGTTAAGTATGTAAGATCATATAGTTGTATGCATTGTGCAATA chr5A_3087 ATGCTAGTGTTAAGTATGTAAGATCATATAGTTGTATGCATTGTGCAATA chr5B_3137 ATGCTAATGTTAAGTATGTAAGCTTATATAGTTATATGCATTGTGCAATA chr4A_3219 ---------TCAAATATGTAAGCTTATG--------TGCATTGTGCAATA chr5B_3237 ATGCTAGCAATAAGTCTGCAAGCTTATG--------TC-----------A chr5A_3303 ATGCTATCACTAAGTATGCAAGCTCATG--------TGCATTGTGCAATA chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 CACTCTTACGTGAAACCCATGTGATG----TTTAAAATATCATAC--CAC chr5A_291 CACTCTTACGTGAAACCCATGTGATG----TTTAAAATATCATAC--CAC chr4A_291 CACTCTTACGTGAAACCCATGTGATG----TTTAAAATATCATAC--CAC chr4A_793 CACTCTTACGTGAAACCTATGTGATG----TTTAAAATATCATAC--CAC chr5B_943 TACTCTTATGTGACACCCATGTGATG----TTTAAAATATCATACCACAC chr5A_957 CACTCTTATGTGACACCAATGTGATG----TTTAAAATATCATACCACAC chr3B_1299 CACTCTTACATGACACACATGTGATG----TCTAAAATATCACAC--CAA chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 CATTCTTACATGACACACATCTGATG----TGTAAAATATCACAC--CAA chr5A_1302 CATTCTTACATGACACACATCTGATG----TGTAAAATATCACAC--CAA chr5D_1323 CACTCTTACATGACACACATGTGATG----CCTAAAATATCACAC--CAA chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 CACTCTTACATGACACCCATGTGATG----TTCAAAATATCATAG--CAC chr5A_1369 CATTCTTACATGACACACATCTGATG----TGTAAAATATCACAC--CAA chr4A_1586 CACTCTTACAATAATTATATGATTATATCTTTAAAATAATCATAC--CAC chr5A_3087 CACTCTTACAATAATTATATGATTATATCTTTAAAATAATCATAC--CAC chr5B_3137 CACTCTTATAATAATTACATGATTATATGTTTAAAATAATCATAC--AAC chr4A_3219 CACTCCTATGTGACATCCATGTGATG----CTTACAATGTTATAC--CAG chr5B_3237 CACTCTTACATGACACCCATGTGATG----TTCAAAATATCATAG--CAC chr5A_3303 CATTCTTACATGACACACATCTGATG----TGTAAAATATCACAC--CAA chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 ACCATAAAATATGCTGATATTTTGGAAGTTTAT--GGTTTTCGTAAATAG chr5A_291 ACCATAAAATATGCTGATATTTTGGAAGTTTAT--GGTTTTCGTAAATGG chr4A_291 ACCATAAAATATGCTGATATTTTGGAAGTTTAT--GGTTTTCGTAAATAG chr4A_793 ACCATAAAATATGCTGATATTTTGGAAGTTTAT--GGTTTTCGTAAATAG chr5B_943 ACCATAAAGTATGCTAATATTTTGGAAGTTTAT--GGTTTTTGTAAATAG chr5A_957 ACCATAAAGTACGCT----------AAGTTTAT--GGTTTTCGTAAATAT chr3B_1299 ACCATACAGTATTATGATATTTTGCAAGTTTAT--TGTTTTGGTAAGTAG chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 ACCATACACTATTATGATATTTTGGAAGTTTAC--GATTTTTATAAACAG chr5A_1302 ACCATACACTATTCTGATATTTTGGAAGTTTAC--GATTTTTATAAACAG chr5D_1323 ACCATACAGTATTCTGATATTTTGCAAGTTTAC--TGTTTTGGTAAGTAG chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 ACCATAAAGTATGGTGATATTTTGGGAGTTTAT--GGTTTTGTTAAATAG chr5A_1369 ACCATACACTATTATGATATTTTGGAAGTTTAC--GATTTTTATAAACAG chr4A_1586 ACCATAAAGTATGCTGATATTTTGGGAGTTTAT--CGTTTTGGTTAATAG chr5A_3087 ACCATAAAGTATGCTGATATTTTGGGAGTTTAT--CGTTTTGGTTAATAG chr5B_3137 ACCATAAAGTATGCTGATATTTTCGGAGTTTAC--CGTGTTGGTTAATAG chr4A_3219 ACTATAAACTATGTTGATATTTTGGGATTTTATATGGTTTTGGTAAATGG chr5B_3237 ACCATAAAGTATGGTGATATATTGGAAGTTTAT--GGTTTTGTTAAATAG chr5A_3303 ACCATACACTATTCTGATATTTTGGAAGTTTGC--GATTTTGATAAACAG chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 ATGGTGTGCAGCAG----GT--T--------------------------- chr5A_291 GTGGTGTGCAGCAG----GT--TGTGGAGAACAGACTTCTTTTTTTTTAC chr4A_291 GTGGTGTGCAGCAG----GT--T--------------------------- chr4A_793 GTGGTGTGTAGCAG----GT--T--------------------------- chr5B_943 GTGGTGTGCAGCAA----GT--T--------------------------- chr5A_957 GTTGTGTGCAGCAA----GT--T--------------------------- chr3B_1299 GTGGTGTGTAGCGAGTAAGGCCCCGT----AAGCTCACTGGCTTCCCAAA chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 GTGGTGTGCAGCAAG----------------------------------- chr5A_1302 GTGGTGTGCAGCAAG----------------------------------- chr5D_1323 GTGGTGTGTAGCAAGTAAGGCCCCGTTCGGAAGCTCACTGGCTTCCCAAA chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 GCGGTACGCAGCAAG----------------------------------- chr5A_1369 GTGGTGTGCAGCAAG----------------------------------- chr4A_1586 GTGGCGTTCAGCAAGTAAAT--TG-------------------------- chr5A_3087 GTGGTGTGCAGCAAGTACAT--T--------------------------- chr5B_3137 GTGGTGTGCAGCAAGTAAATTGT--------------------------- chr4A_3219 GTGGTGTGCAGCAAGTAAATTGTTGAGAAC-------------------- chr5B_3237 GTGGTGCGCAGCAAGTATGT--T--------------------------- chr5A_3303 GTGGTGTGCAGCAAGTAAGT--T--------------------------- chr5B_4221 ------------------GT--T--------------------------- SNPs S------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 GGGGA--------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 CGAGACAGCTTCTCGTGGAGCCAGCGCTAGCTAGCTTCTCCTGGAGCCAA chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 CGAGACAGCTTCTCGTGGAGCCAGCGCTAGCTAGCTTCTCCTGGAGCCAA chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 CGATCGTTCGGTAGCATTGCTGCAGCAGCTGCTTCTTCATGGGCTG---- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 CGATCGTTCGGTAGCATTGCTGGAGCAGCTGCTTCTTCATGGGCTGGCAG chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 CCCAGGAAAGGAGGATGAAGCCCATTCGGGTTGGTAGATGGATGGCCCAG chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 ---------------------TAGCGACAGAAAACGTTTCGTGAGGCACT chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 TTCAGTGGTAAAGGCAGGCTGTAGCGACAGAAAACGCTTCGTGAGGCACT chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 TCGGAAGGGCACTCTCGTGTAATTTCTAGCAACTTCCACTTCTCGCTTTA chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 TCGGAAGGGCACTCTCGTGTAATTTCTAGCAACTTCCACTTCTCGCTTTA chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 GCGAAGCTACGCTTCCGCTGCTCCGAAAAATTGCACTGCGGGGTTCACGT chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 GCGAAGCTACGCTTCCGCTGCTCCGAAAAATTGCACTGCGGGGTTCACGT chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 TCTCCAGGAGCTGGCTTCTCGAAGCTAACTCTTTCGGGGTGGCTTCTCTC chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 TCTCCAGGAGCTGGCTTCTCGAAGCTAACTCGTTCGGGGTGGCTTCTCTT chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 -------------------------------------------------- chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 GGCTCCTTCGGGAAGCTGGCTCGTGGAGAGCTTCCGAAAGGAGCCTAAGT chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 ---------------------------------------------TAAGT chr5A_1302 ---------------------------------------------TAAGT chr5D_1323 GGCTCCTTCGGGAAGCTGGCTCGTGGAGAGCTTCCGAACGGAGCCTAAGT chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 ---------------------------------------------TAAGT chr5A_1369 ---------------------------------------------TAAGT chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -GTGGAGAACAGACTTCATCCATGTTGTTTTT-ACCCAAGCATCCATCTT chr5A_291 -GTGGAGAACAGACTTCATCCATGTTTTTTT--ACCCTAGCATCCATCTT chr4A_291 -GT----------------------------------------------- chr4A_793 -GT----------------------------------------------- chr5B_943 -GTGGAGAACAATGTTCAACCATGTTTTTTT--TGCCAAGCATCCATCTT chr5A_957 -GTGGAGAACAATCTTCATCCATGTTTTTTT--AGCCAAGCATCCATCTT chr3B_1299 TGTAGAGAACAGACTTCATCCATGTTTTTTTT-ACCAAAGTGTTCATCTT chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 TGTACAGAACAGACTTCACCCATGTTTTTTT--ACCAAAGTGTCCATATT chr5A_1302 TGTACAGAACAGACTCCACCCATGTTTTTTT--ACCAAAGTATCCATATT chr5D_1323 TGTAGAGAACAGACTTCATCCATGTTTTTTTT-ACCAAAGTGTCT----- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 TGTAGAGAACAGACTTCATCCATGTTTTTTTC-ATCAAAGCATCCACATC chr5A_1369 TGTACAGAACAGACTTCACCCATGTTTTTTT--ACCAAAGTGTCCATATT chr4A_1586 TGTAGAAAACAGACTTCATCCATGTTTCTTTT-AGCAAAGCATCCATCTT chr5A_3087 -GTAGAAAACAGACTTCATCCATGTTTCTTTT-AGCAAAGCATTGATCTT chr5B_3137 -GTAGAAAACAGACTTCATCCATGTTTCTTTT-AGCAAAGCATCCATCTT chr4A_3219 ---AGACAACATAGTTCATCCATGTTTTTTTTTACCAAAGCATCCATGCT chr5B_3237 -GTAGAGAACAGACTTCATCCATGTTTTTTTTCACCAAAGCATCCACATC chr5A_3303 -GTACAGAACAGACTTCACCCATGTTTTTTTT-ACCAAAGTGTCCATATT chr5B_4221 -GTAGAGAACAGACTTCATCCATGTTTTTTT--ACCAAAGTGTCCATCTT SNPs --------------------------S----------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 CCAG-TTGTAGACTTGGAAGTTTTTGGG----TTTTTTTT--TGGAACAA chr5A_291 CCAT-TTGTAGACTTGGAAGTTTTTGGG----T---TTTT--TGGAACAA chr4A_291 ---------AGACTTCCAAGTTTTTGGG----T---TTTT--TGGAACAA chr4A_793 ---------AGACTTGGAAGTTTTCGGG----T---TTTT--TGGAACAA chr5B_943 CCAT-ATGTAGCCTTGGGAGTTTTAGGA----T---TTTT--TCAAACAA chr5A_957 CCAT-ATGTAGACTTGGGAGTTTTAGGA----T---TTTC--TCAAACAA chr3B_1299 CCAT-TTGTAGACTTGGAAGTTTTTGGA----A---TTTT--TGGAACAA chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 CCAT-TTGTAGACTTGGAAGTTTTAGGA----T---TTTT--TGGAACAA chr5A_1302 CCAT-TTGTAGACTTGGAAGTTTTAGGA----T---TTTT--TGGAACAA chr5D_1323 --------------------------GG----G---TTTG--TGGTGCAA chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 TTCCATTGTAGACTTGGAAGTTTTA-GA----T---TCTT--TGGAGCAA chr5A_1369 CCAT-TTGTAGACTTGGAAGTTTTAGGA----T---TTTT--TGGAACAA chr4A_1586 CCGT-TTGTAGACTTGAAAGTTTTAGGGAT--T---TTTT--AGGAACAA chr5A_3087 CCAT-TTGTAGACTTGAAATTTTTAGTTTTTTT---TTTT--TGGAACAA chr5B_3137 CCAT-CTGTAGACTTGAAAGTTTTTGGA----T---TTTTTTTGCAACAA chr4A_3219 CCAT-GTT------------------------------------------ chr5B_3237 TTCCATTGTAGACTTGGAAGTTTTA-GA----T---TTTT--TGGTACAA chr5A_3303 CCAT-TTGTAGACTTGGAAGTTTTAGGA----T---TTTT--TGGAACAA chr5B_4221 CCAT-TTGTAGACTTGGAAGTTTTTGGA----A---TTTT--TGGAACAA SNPs ---S-----------------------------SSS-------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 GAGATGCATGTTTGTGCTTG-TAGGTTTGTTGATGGGCGCTAACTTTGAG chr5A_291 GAGATGCATGTCTGTGCTTG-TAGGTTTGTTGACGGGCGCTAACTTTGAG chr4A_291 GAGATGCATGTCTGTGCTTG-TAGGTTTGTTGATGGGCGCTAACTTTGAG chr4A_793 GAGATGCATGTCTGTGCTTG-TAGGTTTGTTGATGGGCGCTAACTTTGAG chr5B_943 GAGATGCATGTCTGTGCTTG-TACGTTTGTCGATTTGCGCTAACTTTGAG chr5A_957 GAGATGCATGTCTGTGCTTG-TGAGATTTTC------------------- chr3B_1299 GAGATGCATGTCTGGGTTTG-TGGT-------------GCTAACTTTGAG chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 GAGATGCATGTCTGGGTTTTGT-------------GGCACTAACTTTGAG chr5A_1302 GAGATGCATGTCTGGGTTTTGT-------------GGCACTAACTTTGAG chr5D_1323 GAGATGCATGTCTGGGTTTG-TGGT-------------GCTAACTTTGAG chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 GAGATGCATGTTGGTGCTTG-TAGGTTTGTCGACGGGCACTAACTTTGAG chr5A_1369 GAGATGCATGTCTGGGTTTTGT-------------GGCACTAACTTTGAG chr4A_1586 GAGATGTATGTTTGTGCTTG-TAGGTTTGTCGAGGAGCGCTAACTTTGAG chr5A_3087 GAGATGTATGTTTGTGCTTG-TAGGTTTGTGGATGGGCGCTAACTTTGAG chr5B_3137 GAGATGTATGTTTGTGCTTGGTAGGTTTGTCG---------AACTTTGAG chr4A_3219 -------------------------------------------------- chr5B_3237 GAGGTGCATGTTGGTGCTTG-TAGGTTTGTCGACGGGCGCTAACTTTGAG chr5A_3303 GAGATGCATGTCTGGGTTTTGT-------------GGCGCTAACTTTGAG chr5B_4221 GAGATGCATGTCTGGGTTTG-TCGT-------------GTTAACTTTGAG SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 TTGTGTGACATTTTGCAAAGAATGCGGATTA---AATATTGCTTGCATGT chr5A_291 TTGTGTGACATTTTGCAAAGAATACAGATTA---AATATTGATTGCATGT chr4A_291 TTGTGTGACATTTTGCAAAGAATACAGATTA---AATATTGCTTGCATGT chr4A_793 TTGTGTGACATTTTGCAAAGAATACAGATTA---AATATTGCTTGCATGT chr5B_943 TTGTGTGACATTATGCAAAGAATGTGGAGTG---AATATTGCTTGCA--- chr5A_957 -------------------------------------------------- chr3B_1299 TTGTGTGACATTTTGCAAAGAATGTGGATTA---AATATTGTTTGCACGC chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 TTGTGTGACATTTTGCAAAGAATGTGGATTA---AACATTGCTTTCACGT chr5A_1302 TTGTGTGACATTTTGCAAAGAATGTGGATTA---AACATTGCTTTCACGT chr5D_1323 TTGTGTGACATTTTGCAAAGAATGTGGATTA---AATATTGTTTGCATGC chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 TTGTGTGACATTTTACAAAGAATGTG-ATTA---AATATTGCTTGCATGT chr5A_1369 TTGTGTGACATTTTGCAAAGAATGTGGATTA---AACATTGCTTTCACGT chr4A_1586 TTGTGTGACATTTTGCAAAGAATGTGGATTA---GGTATTGCTTGCATG- chr5A_3087 TTGTGTGACATTTTGCAAAGAATGTGGATTA---GATATTGCTTGCATG- chr5B_3137 TTGTTTGACATTTTGCAAAGAATGTGGATTATTAGATATTGCTTGCATG- chr4A_3219 -------------------------------------------------- chr5B_3237 CTGTGTGACATTTTGCAAAGAATGTG-ATTA---AATATTGCTTGCATGT chr5A_3303 TTGTGTGACATTTTGCAAAGAATGTGGATTA---AACATTGCTTTCACGT chr5B_4221 TTGTGTGACATTTTGCAAAGAATGTGGATTA---AATATTGTTTGCACGC SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 TCGCTCTCCGTGTTCTTTTTGGATGGGAATACAAAACATTCGCCTTGAGA chr5A_291 TCACTCTCCGTTTTCTTTTTGGATGGGAATACAAAACATTCGCCTTGAGA chr4A_291 TCACTCTCTGTTTTCTTTTTGGATGGGAATACAAAACATTCGCCTTGAGA chr4A_793 TCACTCTCTGTTTTCTTTTTGGATGGGAATACAAAACATTCGCCTTGAGA chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 TTGCTCTCAGTTTTCTTTTTGGATATAGATACAAAACATTCGCCTTGAGA chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 TTGCTCTTAGTTTTCTTTCTGGAT-------------------------- chr5A_1302 TTGCTCTTAGTTTTCTTTCTGGAT-------------------------- chr5D_1323 TTGCTCTCAGTTTTCTTTTTGGATATAGATACAAAACATTCGCCTTGAGA chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 TCGCTCTC------------------------------------------ chr5A_1369 TTGCTCTTAGTTTTCTTTCTGGAT-------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 TCGCTCTC------------------------------------------ chr5A_3303 TTGCTCTTAGTTTTCTTTCTGGATATGGGTACAAAACATTCGCCTTGAGA chr5B_4221 TTGCTCTCAGATTTCTTTTTGGATATAGATACAAAACATTCGCCTTGAGA SNPs -----------S-------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 GAGGTGGTTTG-CATGCAAAAGGAAGGATTGTTTATTTGGCACTCATTCT chr5A_291 GAGGTGGTTTG-CATGCCA-AAGAGGGATTGTTTATTTGACACTCATTCT chr4A_291 GAGGTGGTTTG-CATGCCA-AAGAGGGATTGTTTATTTGACACTCATTCT chr4A_793 GAGGTGGTTTG-CATGCCA-AAGAGGGATTGTTTATTTGACACTCATTCT chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 GAGGTGTTTTG-CAAGCAA-AAGTAGGCTTGGTTATTTGATACTCATGTT chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 TAGGTGTTTTG-CAAGCAA-AAGTAGGCTTGGTTATTTGATACTCATGTT chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 GAGGTGTTTTGACAAGCAA-AAGTAGGCTTGGTTATTTGATACTCATGTT chr5B_4221 GAGGTGTTTTG-CAAGCAA-AAGTAGGCTTGGTTATTTGATACTCATGTT SNPs -------------------S-S-----------------S---------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 GTGTTATAATTCGTCACAGGTCCT------------ACAGGCTGCCAGAT chr5A_291 GTGTTATAATTCGTCACAGGTCCT------------ACAGGCTGCCAGAT chr4A_291 GTGTTATAATTCGTCACAGGTCCT------------ACAGGCTGCCAGAT chr4A_793 GTGTTATAATTCGTCACAGGTCCT------------ACAGGCTGCCAGAT chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 ATGTTGTTATTTGTTACAGGTCCTACAGACTCTTGAACTGGCTGCCAGGT chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 ATGTTGTTATTTGTTACAGGTCCTACAGACTCTTGAACTGGCTGCCAGGT chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 GTGTTATTATTTATTACAGGTTCTACAGACTCTTGAACTGGCTGCTCGGT chr5B_4221 GTGTTGTAATTTGTTACAGGTCCTACAGACTCTTGAACTGGCTGTCAGGT SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 TGAGGACGGATGTTTATATAGTGTGGTATACTATGATGGATACTTACCTG chr5A_291 TGAGGACGGATGTTTCTATAGTGTGGTATACTATGATGGATACTTACCTG chr4A_291 TGAGGACGGATGTTTCTATAGTGTGGTATACTATGATGGATACTTACCTG chr4A_793 TGAGGACGGATGTTTCTATAGTGCGGTATACTATGATGGATACTTACCTG chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 CGAGGGGGGATGTTTCTATAGTGTGG------------------------ chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 CGAGGAGGGATGTTTCTATAGTGTGG------------------------ chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 TGAGGAGGGATGTTTGTATAGTGTGGCTTACTGTGATACATGCTTACGTG chr5B_4221 CGAGGAGGGATGTTTCTATAGTGTGGC----------------------- SNPs ---------------S---------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 TGACCATATCTAGTATGCTAGATATATTAGAAATAACATATCTAGTATGC chr5A_291 TGACCA--------------------------------TATGTAGTATGC chr4A_291 TGACCA--------------------------------TATGTAATATGC chr4A_793 TGACCA--------------------------------TATGTAGTATGC chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 ---CCA--------------------------------CATGTAGTACTA chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 ---CCA--------------------------------CATGTAGTACTA chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 TGACCA--------------------------------CATGTAGTACTC chr5B_4221 ----CA--------------------------------CATGTAGTACTA SNPs ------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 TAGATATATTAGAAATAACATCTTTATCTGTAGTTTAGTGCCTTGGTTCT chr5A_291 TAGATATATTAGAAATAACATCTTTATCTGTAGTTTAGTGCCTTGGTTCT chr4A_291 TAGATATAT----------------------------------------- chr4A_793 TAGATATAT----------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 TAGATATATTACAAATAACATCTTTATCTGTAATTTAGTGCCTAGGTCCT chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 TAGATATATTAGAAATAACATCTTTATCTGTAATTTAGTGCCTAGGTCCT chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 TAGATATATTAGAAATAA-------------------------------- chr5B_4221 TAGATATATTAAAAA-AACATCTTTATCTGTAATTTAGTGCCTAGGTCCT SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 CCAAAGTAGAAGCTC--CTTGTGAGATTTTCTGTACACCTTATTGAAAGC chr5A_291 CCAAAGTAGAAGCTC--CTTGTGAGATTTTCTGTACTCCTTATTGAAAGC chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------TGTACACCTTATTGAAACC chr3B_1299 CCAAAGTAGCAGCTCTCCTTGTGGGATTTCCTATACTACA-ATTGAAACC chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 CCAAAGTAGCAG--CTCCTTGTGGGATTTCCTATACTGCA-ATTGAAACC chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 CCAAAGTAGCAG--CTCCTTGTGGGATTTCCTATACTGCA-ATTGAAACC SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 CCTATTAGTGCCCGACGAAGCGTTGTTTGTTGCCTTATCTCATTTTCTGT chr5A_291 CCTATTAGTGCCCGACGAAGTGTTGTTTGTTGCCTTATCTCATTTTCAGT chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 CCTATTAGTGCATGAGGAAGCGTTGTTTATTACCTTATCCATTT------ chr3B_1299 CCTCTTAGTGCCCGAGGAAGCGTTGTTTGTTGCCTTATCTCATTT----- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 CCTCTTAGTGCCCGAGGAAGCGTTGTTTGTTGCCTTATCTCATTT----- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 CCTCTTAGTGCCCAAGGAAGCGTTGTTTGTTGCCTTATCTCATTT----- SNPs -----------------------------------------------S-- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 ACACTACACGCTAAGACGAGGGGATGTGGTGTATCCTTGTCCTGAACTGC chr5A_291 ACACTACA-GCTAAGACAAGGGGATGTGGTGTATCCTTGTGCTGAACTGC chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs --------S--------S----------------------S--------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 --------CGCTAAGACGAGGGGATGTG---------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 TGATACAGATCTAGAAAAATATTCATACAGAGTTTAGGCACTGAAAATAT chr5A_291 TGATACAGATCTAGAAAAATATTCATACAGAATTTAGACACTCAAAATAT chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------S-----S----S------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 ATCAACAACAAGACAGTGCATCTTAG------------------------ chr5A_291 ATCAACAACAAGACAGTGCATCTTAGAGCATCTCCAGCCGTTCGGCCCCC chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 CAGGGCGCAAAAAAAGAGCGGTCTGGGGGCGAACCGGCGCTAGTTCGGCC chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 CCTGGGGGCGACCTAGCTCCCAGTCACGCCCCCAGGCGCCACCCCCAGGA chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 CGCAGAAAATTCGAATTTGGTCGTTCCCGCTCATAAAAGACGCCACAAGT chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 CCGGCGATCGCAAGTCACAGTTCGGCGTACAAAAAATAGAGCGGCACAGT chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 CGGTGCAACGCATCACTCGGCGGGCACTGCCCCAGGCGTCGGCGGAGTTG chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 GCGTGCACGGGCTTGGCGGTGTCGGAGCTGCTTCTGTGCTGGGCGGTGTC chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 GGCGCGGCTTCGGTGGTGCTGGGCGTCGTGGAGGCGTCATCACGCGAGCT chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 TGGCGGCGGCGGCGTTGAAAAGGGAAGCTGGTTCAGGATGAGGCCGCGCT chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 CCGCCAAGTACCACGCCTTGACCGCCTCGTCGGTGCTCTGGAGCATGACC chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 GCCCCGCCCAGCAGGAAAGCCAGGTCGGTGTTTCTCTTCTTCGCGGCGAT chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 GTTGGTCCGGAGCAGGTCGAGTTTGATGGTGCTGGTCGACATCAACGCCG chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 ACCACCGTGCATCGGTCTTCTCTTCTCGAAGGACGGCCCGGGCCTGCGTG chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 TCGGCGAGGCAGTGCTCGATGGACTCCTGCACTTGAGCGGTAGCCGTGTC chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 GGCGTATTTCCTCTTCTTGGCACATTTGTTGCCGTCCGGCCGCCCTTCCG chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 ATGCGCCAGGAGTCGGCGCGTCCGGCTTGTAGGTCTCCTTGGCCTTGTCG chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 AGGGTGCGCCGGACTTTCGCCCACTTCTGGCACTTGTCAATGCGCTTGTA chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 GACGTGGAGGTACTTGAATTCGGTGTCGCTGTTGCTCTGCCGGTACAGGG chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 CGAACATGTGCAGCAACTGCGTGGAGGAACAAACAGTTGGCGGGCGTGCA chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 CAGCAAAGAGAGGCGGGAGACCGGCGTGGCATACCTGATCCTCAACGCTG chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 GCGCCGCTCTCCGAGCGAGCCGCGACCTCCTCGACGACCCCATGCCATTG chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 CACGCCCCTGGATACGCCCCCAATAGTTCGCCATCGCCTTGGAGCCGCGC chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 TGCATGTAGACGCCTTTGAAGTAGGGGTCGACGAGCTTGCGCTCGTCGAA chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 CTCGGCCTTGATGCGGTCCTAGTACGTCTCGATGCTCTAGTTCGTGCCGG chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 TGGTCGGGTCGAGGCAGACGACTTTCCATGCTTCGCCGAGGCATTCCTCC chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 TCCTTGGACGCCCACTTGATGCACGGCTCGCCTGACCTGGCCGCCCGCTT chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 CTTCTTCTTGCGCCCCTTCGCCGGAACAGGCGCCGGCTCCTCCTCCTCCT chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 CCTCCTCATCGTCCTCCTCCTCCTCCTGCTCCTGCTCCTCCTGCTCGTCC chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 TCGCCGTAGACGTAGCCGAGCTCGCCGTCCATGCCGCCGCTGAGATCCAT chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 CGTCTCATCCTGGGTGACGAACCCGGGAGACGCGGCGGCCGTGGCCGAAC chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 CCGCCGCGATGATGTCGTCCATGTCGGCCTCGGTCTCGTCGGTGCCGCCG chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 AGGTGCGAGAAGGGCAGCGGCCCATGACGGGGTGGGGGCGTCGGGGAGGA chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 AGCGTAGGCGGCCGGTGAGTAGTTGTATGGAGGGTACTGCACGCCGGCAA chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 AGGCGGGCGAGGGCGTGCGCTAGGTCGGGTCTACATGGGGGAAAGTGACG chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 TTTGGGTTGAACCCATCGTGCGCGTCCCCGTCGGCGTAGCCCGGTGAGGG chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 TGATCCCCATGGCTGCGGAGAGCCAACGCCTTGCTGGCCCCAGGGCGTGT chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 ACTGGGCGTGGCTGCCGGGTGGATTCATCATCCCCGTGCAACTCGCGTCG chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 GCCTCGGCATGGTCCGCCGATGAGGCAGCCACAGCCGTGCGCGCTGCGTT chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 GTCGCGGGCCTTCTTGGCGATGGCCCTGTTCCGCCAGTCGGCGGTGACAG chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 CCTCCCGTCGCTGAACTTCCGCCCTCCACTCGGCATTTGACATGCCCGGT chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 GGCTTGGACGGCGGTGCCCTCGGCTTCCTCTGCTTCGGCTGGGCGACGGA chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 GGCGGTCGCGGTTGCTGCCGCGCGGGGGACGACGTATTTCTTCGGTGGCA chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 TGGCGGCCGGCTGGGAGGCGAGCGGGAGGGAGATTGGCGGGAGGAAGGAA chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 GAGAATGGGAGAGAAGTGGGGTAAAGCGGGAGGAAACGGCGGGAAGAGGC chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 GCTCGACTCGCCGACAGGGTGGACCCACGCTCCCTTTTCGCTTGTGTCGG chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 CGCCCCAGGCGCCCCCCCAGGGCGCCGGGTTTGGCGTGGGTCCACCGGCA chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 CTAGTTTCGACCCGAGCCGGCGAAAAACGGGCTTCTGGGGTCGCGACTGG chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------------------------------- chr5A_291 GCCGTTTTTTCAGCGCCGGCGCGGCAAAAACGCCTGGGAAGGGCCTGTCG chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 -------------------------------------------------- chr5D_1_TraesCS5D01G005200 -------------------------GCCAACACATATTGAATTGAAATAC chr5A_291 GGGGCGCGGCTGGAGATGCTCTTAGGCCAACACATATTGAATTGAAATAC chr4A_291 -------------------------------------------------- chr4A_793 -------------------------------------------------- chr5B_943 -------------------------------------------------- chr5A_957 -------------------------------------------------- chr3B_1299 -------------------------------------------------- chr5B_1301 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5A_1302 -------------------------------------------------- chr5D_1323 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1324 -------------------------------------------------- chr5B_1328 -------------------------------------------------- chr5A_1369 -------------------------------------------------- chr4A_1586 -------------------------------------------------- chr5A_3087 -------------------------------------------------- chr5B_3137 -------------------------------------------------- chr4A_3219 -------------------------------------------------- chr5B_3237 -------------------------------------------------- chr5A_3303 -------------------------------------------------- chr5B_4221 -------------------------------------------------- SNPs -------------------------------------------------- forward_821 -------------------------------------------------- reverse_1785 -------------------------------------------------- forward_1475 -------------------------------------------------- reverse_3277 -------------------------------------------------- forward_1785 -------------------------------------------------- reverse_5063 -------------------------------------------------- forward_4880 -------------------------------------------------- reverse_7359 -------------------------------------------------- input_sequence_25548 --------------------------- chr5D_1_TraesCS5D01G005200 ACACCATCCCATCACACAGGGCAAGAA chr5A_291 ACACCATCCCATCACAAATGGCACGAA chr4A_291 --------------------------- chr4A_793 --------------------------- chr5B_943 --------------------------- chr5A_957 --------------------------- chr3B_1299 --------------------------- chr5B_1301 --------------------------- chr5A_1302 --------------------------- chr5A_1302 --------------------------- chr5A_1302 --------------------------- chr5D_1323 --------------------------- chr5B_1324 --------------------------- chr5B_1324 --------------------------- chr5B_1328 --------------------------- chr5A_1369 --------------------------- chr4A_1586 --------------------------- chr5A_3087 --------------------------- chr5B_3137 --------------------------- chr4A_3219 --------------------------- chr5B_3237 --------------------------- chr5A_3303 --------------------------- chr5B_4221 --------------------------- SNPs ----------------S-S----S--- forward_821 --------------------------- reverse_1785 --------------------------- forward_1475 --------------------------- reverse_3277 --------------------------- forward_1785 --------------------------- reverse_5063 --------------------------- forward_4880 --------------------------- reverse_7359 ---------------------------