Multiple sequence alignment - TraesCS5B01G561600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G561600 chr5B 100.000 2441 0 0 1 2441 707876794 707874354 0.000000e+00 4508.0
1 TraesCS5B01G561600 chr5D 93.351 1549 72 11 576 2102 565348855 565350394 0.000000e+00 2261.0
2 TraesCS5B01G561600 chr5D 90.043 231 20 3 2201 2431 565350551 565350778 1.840000e-76 296.0
3 TraesCS5B01G561600 chr5D 91.791 134 5 3 2086 2218 565350412 565350540 5.360000e-42 182.0
4 TraesCS5B01G561600 chr4A 86.361 1679 146 38 613 2268 606811400 606813018 0.000000e+00 1755.0
5 TraesCS5B01G561600 chr6D 81.925 509 67 10 1701 2206 88482992 88482506 8.130000e-110 407.0
6 TraesCS5B01G561600 chr1B 83.333 378 59 4 1705 2080 193463658 193464033 1.800000e-91 346.0
7 TraesCS5B01G561600 chr1B 94.340 53 3 0 2071 2123 193465116 193465168 5.590000e-12 82.4
8 TraesCS5B01G561600 chr7D 82.469 405 59 8 1700 2098 615575850 615575452 6.460000e-91 344.0
9 TraesCS5B01G561600 chr7A 80.000 425 80 4 1702 2123 708318083 708318505 2.360000e-80 309.0
10 TraesCS5B01G561600 chr7B 81.793 357 58 6 1722 2074 708444813 708445166 2.370000e-75 292.0
11 TraesCS5B01G561600 chr7B 87.500 72 6 3 236 306 156730267 156730198 2.010000e-11 80.5
12 TraesCS5B01G561600 chr7B 83.721 86 8 5 232 313 138726495 138726578 2.600000e-10 76.8
13 TraesCS5B01G561600 chr2A 81.029 311 43 12 1 309 183559439 183559735 1.460000e-57 233.0
14 TraesCS5B01G561600 chr1D 84.884 86 8 5 232 315 416766759 416766677 5.590000e-12 82.4
15 TraesCS5B01G561600 chr3B 88.406 69 4 3 236 304 150225914 150225978 2.010000e-11 80.5
16 TraesCS5B01G561600 chr3B 88.406 69 4 3 236 304 157720171 157720235 2.010000e-11 80.5
17 TraesCS5B01G561600 chr3B 86.667 75 6 3 236 310 174839092 174839022 2.010000e-11 80.5
18 TraesCS5B01G561600 chr6A 85.714 77 7 1 234 306 498000647 498000723 7.240000e-11 78.7
19 TraesCS5B01G561600 chr4D 81.915 94 8 8 224 310 11853055 11853146 1.210000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G561600 chr5B 707874354 707876794 2440 True 4508.0 4508 100.000000 1 2441 1 chr5B.!!$R1 2440
1 TraesCS5B01G561600 chr5D 565348855 565350778 1923 False 913.0 2261 91.728333 576 2431 3 chr5D.!!$F1 1855
2 TraesCS5B01G561600 chr4A 606811400 606813018 1618 False 1755.0 1755 86.361000 613 2268 1 chr4A.!!$F1 1655
3 TraesCS5B01G561600 chr1B 193463658 193465168 1510 False 214.2 346 88.836500 1705 2123 2 chr1B.!!$F1 418

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.034059 AACAGCTCAAGTCTGGGTCG 59.966 55.0 0.0 0.0 35.94 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1703 1732 0.101399 AGTAACGATGCTGAGAGCGG 59.899 55.0 0.0 0.0 46.26 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.722193 AGCATTTGGTCTGTCCGG 57.278 55.556 0.00 0.00 39.52 5.14
18 19 2.066340 AGCATTTGGTCTGTCCGGA 58.934 52.632 0.00 0.00 39.52 5.14
19 20 0.400213 AGCATTTGGTCTGTCCGGAA 59.600 50.000 5.23 0.00 39.52 4.30
20 21 1.004745 AGCATTTGGTCTGTCCGGAAT 59.995 47.619 5.23 0.00 39.52 3.01
21 22 1.133025 GCATTTGGTCTGTCCGGAATG 59.867 52.381 5.23 4.74 41.30 2.67
22 23 2.710377 CATTTGGTCTGTCCGGAATGA 58.290 47.619 5.23 4.33 41.08 2.57
23 24 2.178912 TTTGGTCTGTCCGGAATGAC 57.821 50.000 22.66 22.66 39.52 3.06
24 25 1.052617 TTGGTCTGTCCGGAATGACA 58.947 50.000 28.16 14.84 42.75 3.58
25 26 1.052617 TGGTCTGTCCGGAATGACAA 58.947 50.000 28.16 20.23 44.19 3.18
26 27 1.418264 TGGTCTGTCCGGAATGACAAA 59.582 47.619 28.16 18.24 44.19 2.83
27 28 2.158740 TGGTCTGTCCGGAATGACAAAA 60.159 45.455 28.16 16.44 44.19 2.44
28 29 2.225727 GGTCTGTCCGGAATGACAAAAC 59.774 50.000 28.16 15.04 44.19 2.43
29 30 2.225727 GTCTGTCCGGAATGACAAAACC 59.774 50.000 24.63 4.21 44.19 3.27
30 31 2.105821 TCTGTCCGGAATGACAAAACCT 59.894 45.455 5.23 0.00 44.19 3.50
31 32 2.884639 CTGTCCGGAATGACAAAACCTT 59.115 45.455 5.23 0.00 44.19 3.50
32 33 2.882137 TGTCCGGAATGACAAAACCTTC 59.118 45.455 5.23 0.00 42.06 3.46
33 34 2.882137 GTCCGGAATGACAAAACCTTCA 59.118 45.455 5.23 0.00 35.29 3.02
34 35 3.058224 GTCCGGAATGACAAAACCTTCAG 60.058 47.826 5.23 0.00 35.29 3.02
35 36 3.146066 CCGGAATGACAAAACCTTCAGA 58.854 45.455 0.00 0.00 0.00 3.27
36 37 3.189287 CCGGAATGACAAAACCTTCAGAG 59.811 47.826 0.00 0.00 0.00 3.35
37 38 3.365364 CGGAATGACAAAACCTTCAGAGC 60.365 47.826 0.00 0.00 0.00 4.09
38 39 3.569701 GGAATGACAAAACCTTCAGAGCA 59.430 43.478 0.00 0.00 0.00 4.26
39 40 4.320788 GGAATGACAAAACCTTCAGAGCAG 60.321 45.833 0.00 0.00 0.00 4.24
40 41 1.949525 TGACAAAACCTTCAGAGCAGC 59.050 47.619 0.00 0.00 0.00 5.25
41 42 1.949525 GACAAAACCTTCAGAGCAGCA 59.050 47.619 0.00 0.00 0.00 4.41
42 43 1.952296 ACAAAACCTTCAGAGCAGCAG 59.048 47.619 0.00 0.00 0.00 4.24
43 44 0.957362 AAAACCTTCAGAGCAGCAGC 59.043 50.000 0.00 0.00 42.56 5.25
44 45 0.179009 AAACCTTCAGAGCAGCAGCA 60.179 50.000 3.17 0.00 45.49 4.41
45 46 0.037877 AACCTTCAGAGCAGCAGCAT 59.962 50.000 3.17 0.00 45.49 3.79
46 47 0.392729 ACCTTCAGAGCAGCAGCATC 60.393 55.000 3.17 0.00 45.49 3.91
47 48 0.392595 CCTTCAGAGCAGCAGCATCA 60.393 55.000 3.17 0.00 45.49 3.07
48 49 0.727970 CTTCAGAGCAGCAGCATCAC 59.272 55.000 3.17 0.00 45.49 3.06
49 50 0.035739 TTCAGAGCAGCAGCATCACA 59.964 50.000 3.17 0.00 45.49 3.58
50 51 0.252197 TCAGAGCAGCAGCATCACAT 59.748 50.000 3.17 0.00 45.49 3.21
51 52 1.095600 CAGAGCAGCAGCATCACATT 58.904 50.000 3.17 0.00 45.49 2.71
52 53 1.472878 CAGAGCAGCAGCATCACATTT 59.527 47.619 3.17 0.00 45.49 2.32
53 54 2.681344 CAGAGCAGCAGCATCACATTTA 59.319 45.455 3.17 0.00 45.49 1.40
54 55 2.943690 AGAGCAGCAGCATCACATTTAG 59.056 45.455 3.17 0.00 45.49 1.85
55 56 2.022195 AGCAGCAGCATCACATTTAGG 58.978 47.619 3.17 0.00 45.49 2.69
56 57 1.535437 GCAGCAGCATCACATTTAGGC 60.535 52.381 0.00 0.00 41.58 3.93
57 58 1.746787 CAGCAGCATCACATTTAGGCA 59.253 47.619 0.00 0.00 0.00 4.75
58 59 2.361119 CAGCAGCATCACATTTAGGCAT 59.639 45.455 0.00 0.00 0.00 4.40
59 60 2.621998 AGCAGCATCACATTTAGGCATC 59.378 45.455 0.00 0.00 0.00 3.91
60 61 2.621998 GCAGCATCACATTTAGGCATCT 59.378 45.455 0.00 0.00 0.00 2.90
61 62 3.550233 GCAGCATCACATTTAGGCATCTG 60.550 47.826 0.00 0.00 0.00 2.90
62 63 3.004419 CAGCATCACATTTAGGCATCTGG 59.996 47.826 0.00 0.00 0.00 3.86
63 64 3.117776 AGCATCACATTTAGGCATCTGGA 60.118 43.478 0.00 0.00 0.00 3.86
64 65 3.633525 GCATCACATTTAGGCATCTGGAA 59.366 43.478 0.00 0.00 0.00 3.53
65 66 4.261489 GCATCACATTTAGGCATCTGGAAG 60.261 45.833 0.00 0.00 0.00 3.46
66 67 4.574674 TCACATTTAGGCATCTGGAAGT 57.425 40.909 0.00 0.00 33.76 3.01
67 68 4.922206 TCACATTTAGGCATCTGGAAGTT 58.078 39.130 0.00 0.00 33.76 2.66
68 69 4.943705 TCACATTTAGGCATCTGGAAGTTC 59.056 41.667 0.00 0.00 33.76 3.01
69 70 4.946157 CACATTTAGGCATCTGGAAGTTCT 59.054 41.667 2.25 0.00 33.76 3.01
70 71 6.070251 TCACATTTAGGCATCTGGAAGTTCTA 60.070 38.462 2.25 0.00 33.76 2.10
71 72 6.769822 CACATTTAGGCATCTGGAAGTTCTAT 59.230 38.462 2.25 0.00 33.76 1.98
72 73 6.995091 ACATTTAGGCATCTGGAAGTTCTATC 59.005 38.462 2.25 0.00 33.76 2.08
73 74 6.814954 TTTAGGCATCTGGAAGTTCTATCT 57.185 37.500 2.25 0.00 33.76 1.98
74 75 4.686191 AGGCATCTGGAAGTTCTATCTG 57.314 45.455 2.25 0.00 33.76 2.90
75 76 3.390639 AGGCATCTGGAAGTTCTATCTGG 59.609 47.826 2.25 0.00 33.76 3.86
76 77 3.389329 GGCATCTGGAAGTTCTATCTGGA 59.611 47.826 2.25 0.00 33.76 3.86
77 78 4.502950 GGCATCTGGAAGTTCTATCTGGAG 60.503 50.000 2.25 0.00 33.76 3.86
78 79 4.502950 GCATCTGGAAGTTCTATCTGGAGG 60.503 50.000 2.25 0.00 33.76 4.30
79 80 4.609866 TCTGGAAGTTCTATCTGGAGGA 57.390 45.455 2.25 0.00 33.76 3.71
80 81 4.947883 TCTGGAAGTTCTATCTGGAGGAA 58.052 43.478 2.25 0.00 33.76 3.36
81 82 4.712337 TCTGGAAGTTCTATCTGGAGGAAC 59.288 45.833 2.25 0.00 39.43 3.62
82 83 3.447586 TGGAAGTTCTATCTGGAGGAACG 59.552 47.826 2.25 0.00 42.60 3.95
83 84 3.700038 GGAAGTTCTATCTGGAGGAACGA 59.300 47.826 2.25 0.00 42.60 3.85
84 85 4.342665 GGAAGTTCTATCTGGAGGAACGAT 59.657 45.833 2.25 0.00 42.60 3.73
85 86 5.163395 GGAAGTTCTATCTGGAGGAACGATT 60.163 44.000 2.25 0.00 42.60 3.34
86 87 6.040616 GGAAGTTCTATCTGGAGGAACGATTA 59.959 42.308 2.25 0.00 42.60 1.75
87 88 7.256012 GGAAGTTCTATCTGGAGGAACGATTAT 60.256 40.741 2.25 0.00 42.60 1.28
88 89 6.987386 AGTTCTATCTGGAGGAACGATTATG 58.013 40.000 0.00 0.00 42.60 1.90
89 90 5.984695 TCTATCTGGAGGAACGATTATGG 57.015 43.478 0.00 0.00 0.00 2.74
90 91 4.772624 TCTATCTGGAGGAACGATTATGGG 59.227 45.833 0.00 0.00 0.00 4.00
91 92 3.040655 TCTGGAGGAACGATTATGGGA 57.959 47.619 0.00 0.00 0.00 4.37
92 93 3.380393 TCTGGAGGAACGATTATGGGAA 58.620 45.455 0.00 0.00 0.00 3.97
93 94 3.388024 TCTGGAGGAACGATTATGGGAAG 59.612 47.826 0.00 0.00 0.00 3.46
94 95 2.158813 TGGAGGAACGATTATGGGAAGC 60.159 50.000 0.00 0.00 0.00 3.86
95 96 2.158813 GGAGGAACGATTATGGGAAGCA 60.159 50.000 0.00 0.00 0.00 3.91
96 97 2.872858 GAGGAACGATTATGGGAAGCAC 59.127 50.000 0.00 0.00 0.00 4.40
97 98 2.238646 AGGAACGATTATGGGAAGCACA 59.761 45.455 0.00 0.00 0.00 4.57
98 99 2.614057 GGAACGATTATGGGAAGCACAG 59.386 50.000 0.00 0.00 0.00 3.66
99 100 1.668419 ACGATTATGGGAAGCACAGC 58.332 50.000 0.00 0.00 0.00 4.40
100 101 1.210478 ACGATTATGGGAAGCACAGCT 59.790 47.619 0.00 0.00 42.56 4.24
101 102 1.869767 CGATTATGGGAAGCACAGCTC 59.130 52.381 0.00 0.00 38.25 4.09
102 103 2.742856 CGATTATGGGAAGCACAGCTCA 60.743 50.000 0.00 0.00 38.25 4.26
103 104 2.408271 TTATGGGAAGCACAGCTCAG 57.592 50.000 0.00 0.00 38.25 3.35
104 105 0.543277 TATGGGAAGCACAGCTCAGG 59.457 55.000 0.00 0.00 38.25 3.86
105 106 2.045536 GGGAAGCACAGCTCAGGG 60.046 66.667 0.00 0.00 38.25 4.45
106 107 2.749441 GGAAGCACAGCTCAGGGC 60.749 66.667 0.00 0.00 38.25 5.19
107 108 2.033141 GAAGCACAGCTCAGGGCA 59.967 61.111 0.63 0.00 44.79 5.36
108 109 1.601759 GAAGCACAGCTCAGGGCAA 60.602 57.895 0.63 0.00 44.79 4.52
109 110 1.152694 AAGCACAGCTCAGGGCAAA 60.153 52.632 0.63 0.00 44.79 3.68
110 111 0.756442 AAGCACAGCTCAGGGCAAAA 60.756 50.000 0.63 0.00 44.79 2.44
111 112 1.177256 AGCACAGCTCAGGGCAAAAG 61.177 55.000 0.63 0.00 44.79 2.27
112 113 1.174712 GCACAGCTCAGGGCAAAAGA 61.175 55.000 0.00 0.00 44.79 2.52
113 114 1.321474 CACAGCTCAGGGCAAAAGAA 58.679 50.000 0.00 0.00 44.79 2.52
114 115 1.268899 CACAGCTCAGGGCAAAAGAAG 59.731 52.381 0.00 0.00 44.79 2.85
115 116 0.886563 CAGCTCAGGGCAAAAGAAGG 59.113 55.000 0.00 0.00 44.79 3.46
116 117 0.897401 AGCTCAGGGCAAAAGAAGGC 60.897 55.000 0.00 0.00 44.79 4.35
117 118 1.181098 GCTCAGGGCAAAAGAAGGCA 61.181 55.000 0.00 0.00 41.35 4.75
118 119 1.331214 CTCAGGGCAAAAGAAGGCAA 58.669 50.000 0.00 0.00 0.00 4.52
119 120 1.688197 CTCAGGGCAAAAGAAGGCAAA 59.312 47.619 0.00 0.00 0.00 3.68
120 121 1.688197 TCAGGGCAAAAGAAGGCAAAG 59.312 47.619 0.00 0.00 0.00 2.77
121 122 0.394192 AGGGCAAAAGAAGGCAAAGC 59.606 50.000 0.00 0.00 0.00 3.51
122 123 0.106521 GGGCAAAAGAAGGCAAAGCA 59.893 50.000 0.00 0.00 0.00 3.91
123 124 1.505425 GGCAAAAGAAGGCAAAGCAG 58.495 50.000 0.00 0.00 0.00 4.24
124 125 1.069049 GGCAAAAGAAGGCAAAGCAGA 59.931 47.619 0.00 0.00 0.00 4.26
125 126 2.483538 GGCAAAAGAAGGCAAAGCAGAA 60.484 45.455 0.00 0.00 0.00 3.02
126 127 2.541346 GCAAAAGAAGGCAAAGCAGAAC 59.459 45.455 0.00 0.00 0.00 3.01
127 128 3.784338 CAAAAGAAGGCAAAGCAGAACA 58.216 40.909 0.00 0.00 0.00 3.18
128 129 3.722728 AAAGAAGGCAAAGCAGAACAG 57.277 42.857 0.00 0.00 0.00 3.16
129 130 0.957362 AGAAGGCAAAGCAGAACAGC 59.043 50.000 0.00 0.00 0.00 4.40
131 132 0.957362 AAGGCAAAGCAGAACAGCTC 59.043 50.000 0.00 0.00 45.89 4.09
132 133 0.179009 AGGCAAAGCAGAACAGCTCA 60.179 50.000 0.00 0.00 45.89 4.26
133 134 0.670162 GGCAAAGCAGAACAGCTCAA 59.330 50.000 0.00 0.00 45.89 3.02
134 135 1.335689 GGCAAAGCAGAACAGCTCAAG 60.336 52.381 0.00 0.00 45.89 3.02
135 136 1.336125 GCAAAGCAGAACAGCTCAAGT 59.664 47.619 0.00 0.00 45.89 3.16
136 137 2.604132 GCAAAGCAGAACAGCTCAAGTC 60.604 50.000 0.00 0.00 45.89 3.01
137 138 2.877168 CAAAGCAGAACAGCTCAAGTCT 59.123 45.455 0.00 0.00 45.89 3.24
138 139 2.166821 AGCAGAACAGCTCAAGTCTG 57.833 50.000 7.72 7.72 42.18 3.51
139 140 1.155042 GCAGAACAGCTCAAGTCTGG 58.845 55.000 12.13 0.00 35.94 3.86
140 141 1.805869 CAGAACAGCTCAAGTCTGGG 58.194 55.000 5.08 0.00 35.94 4.45
141 142 1.071385 CAGAACAGCTCAAGTCTGGGT 59.929 52.381 5.08 0.00 35.94 4.51
142 143 1.346068 AGAACAGCTCAAGTCTGGGTC 59.654 52.381 0.00 0.00 35.94 4.46
143 144 0.034059 AACAGCTCAAGTCTGGGTCG 59.966 55.000 0.00 0.00 35.94 4.79
144 145 1.079543 CAGCTCAAGTCTGGGTCGG 60.080 63.158 0.00 0.00 0.00 4.79
145 146 1.228894 AGCTCAAGTCTGGGTCGGA 60.229 57.895 0.00 0.00 0.00 4.55
146 147 0.832135 AGCTCAAGTCTGGGTCGGAA 60.832 55.000 0.00 0.00 0.00 4.30
147 148 0.670854 GCTCAAGTCTGGGTCGGAAC 60.671 60.000 0.00 0.00 0.00 3.62
148 149 0.679505 CTCAAGTCTGGGTCGGAACA 59.320 55.000 0.00 0.00 0.00 3.18
149 150 1.070134 CTCAAGTCTGGGTCGGAACAA 59.930 52.381 0.00 0.00 0.00 2.83
150 151 1.697432 TCAAGTCTGGGTCGGAACAAT 59.303 47.619 0.00 0.00 0.00 2.71
151 152 2.105821 TCAAGTCTGGGTCGGAACAATT 59.894 45.455 0.00 0.00 0.00 2.32
152 153 2.884639 CAAGTCTGGGTCGGAACAATTT 59.115 45.455 0.00 0.00 0.00 1.82
153 154 2.779506 AGTCTGGGTCGGAACAATTTC 58.220 47.619 0.00 0.00 0.00 2.17
154 155 2.372172 AGTCTGGGTCGGAACAATTTCT 59.628 45.455 0.00 0.00 31.71 2.52
155 156 2.484264 GTCTGGGTCGGAACAATTTCTG 59.516 50.000 0.00 0.00 39.24 3.02
156 157 2.105821 TCTGGGTCGGAACAATTTCTGT 59.894 45.455 0.00 0.00 41.27 3.41
157 158 3.325425 TCTGGGTCGGAACAATTTCTGTA 59.675 43.478 0.00 0.00 37.23 2.74
158 159 4.069304 CTGGGTCGGAACAATTTCTGTAA 58.931 43.478 0.00 0.00 37.23 2.41
159 160 4.658063 TGGGTCGGAACAATTTCTGTAAT 58.342 39.130 0.00 0.00 37.23 1.89
160 161 5.806818 TGGGTCGGAACAATTTCTGTAATA 58.193 37.500 0.00 0.00 37.23 0.98
161 162 6.419791 TGGGTCGGAACAATTTCTGTAATAT 58.580 36.000 0.00 0.00 37.23 1.28
162 163 6.317642 TGGGTCGGAACAATTTCTGTAATATG 59.682 38.462 0.00 0.00 37.23 1.78
163 164 6.540914 GGGTCGGAACAATTTCTGTAATATGA 59.459 38.462 0.00 0.00 37.23 2.15
164 165 7.228706 GGGTCGGAACAATTTCTGTAATATGAT 59.771 37.037 0.00 0.00 37.23 2.45
165 166 8.621286 GGTCGGAACAATTTCTGTAATATGATT 58.379 33.333 0.00 0.00 37.23 2.57
178 179 9.639601 TCTGTAATATGATTATCGTGATGTTCC 57.360 33.333 0.00 0.00 0.00 3.62
179 180 8.771920 TGTAATATGATTATCGTGATGTTCCC 57.228 34.615 0.00 0.00 0.00 3.97
180 181 8.593679 TGTAATATGATTATCGTGATGTTCCCT 58.406 33.333 0.00 0.00 0.00 4.20
183 184 6.918067 ATGATTATCGTGATGTTCCCTAGA 57.082 37.500 0.00 0.00 0.00 2.43
184 185 6.332735 TGATTATCGTGATGTTCCCTAGAG 57.667 41.667 0.00 0.00 0.00 2.43
185 186 4.585955 TTATCGTGATGTTCCCTAGAGC 57.414 45.455 0.00 0.00 0.00 4.09
186 187 2.145397 TCGTGATGTTCCCTAGAGCT 57.855 50.000 0.00 0.00 0.00 4.09
187 188 1.751351 TCGTGATGTTCCCTAGAGCTG 59.249 52.381 0.00 0.00 0.00 4.24
188 189 1.202463 CGTGATGTTCCCTAGAGCTGG 60.202 57.143 0.00 0.00 0.00 4.85
189 190 0.833287 TGATGTTCCCTAGAGCTGGC 59.167 55.000 0.00 0.00 0.00 4.85
190 191 0.833287 GATGTTCCCTAGAGCTGGCA 59.167 55.000 0.00 0.00 0.00 4.92
191 192 1.419387 GATGTTCCCTAGAGCTGGCAT 59.581 52.381 0.00 0.00 0.00 4.40
192 193 1.289160 TGTTCCCTAGAGCTGGCATT 58.711 50.000 0.00 0.00 0.00 3.56
193 194 1.065199 TGTTCCCTAGAGCTGGCATTG 60.065 52.381 0.00 0.00 0.00 2.82
194 195 0.548031 TTCCCTAGAGCTGGCATTGG 59.452 55.000 0.00 0.00 0.00 3.16
195 196 0.621571 TCCCTAGAGCTGGCATTGGT 60.622 55.000 0.00 0.00 0.00 3.67
196 197 0.257039 CCCTAGAGCTGGCATTGGTT 59.743 55.000 0.00 0.00 0.00 3.67
197 198 1.386533 CCTAGAGCTGGCATTGGTTG 58.613 55.000 0.00 0.00 0.00 3.77
198 199 1.065199 CCTAGAGCTGGCATTGGTTGA 60.065 52.381 0.00 0.00 0.00 3.18
199 200 2.422519 CCTAGAGCTGGCATTGGTTGAT 60.423 50.000 0.00 0.00 0.00 2.57
200 201 2.226962 AGAGCTGGCATTGGTTGATT 57.773 45.000 0.00 0.00 0.00 2.57
201 202 2.532843 AGAGCTGGCATTGGTTGATTT 58.467 42.857 0.00 0.00 0.00 2.17
202 203 2.901839 AGAGCTGGCATTGGTTGATTTT 59.098 40.909 0.00 0.00 0.00 1.82
203 204 3.325716 AGAGCTGGCATTGGTTGATTTTT 59.674 39.130 0.00 0.00 0.00 1.94
204 205 4.527816 AGAGCTGGCATTGGTTGATTTTTA 59.472 37.500 0.00 0.00 0.00 1.52
205 206 4.568956 AGCTGGCATTGGTTGATTTTTAC 58.431 39.130 0.00 0.00 0.00 2.01
206 207 3.684305 GCTGGCATTGGTTGATTTTTACC 59.316 43.478 0.00 0.00 34.93 2.85
207 208 4.563374 GCTGGCATTGGTTGATTTTTACCT 60.563 41.667 0.00 0.00 35.41 3.08
208 209 5.550290 CTGGCATTGGTTGATTTTTACCTT 58.450 37.500 0.00 0.00 35.41 3.50
209 210 5.934781 TGGCATTGGTTGATTTTTACCTTT 58.065 33.333 0.00 0.00 35.41 3.11
210 211 7.067496 TGGCATTGGTTGATTTTTACCTTTA 57.933 32.000 0.00 0.00 35.41 1.85
211 212 7.684529 TGGCATTGGTTGATTTTTACCTTTAT 58.315 30.769 0.00 0.00 35.41 1.40
212 213 7.821846 TGGCATTGGTTGATTTTTACCTTTATC 59.178 33.333 0.00 0.00 35.41 1.75
213 214 8.040727 GGCATTGGTTGATTTTTACCTTTATCT 58.959 33.333 0.00 0.00 35.41 1.98
214 215 9.435688 GCATTGGTTGATTTTTACCTTTATCTT 57.564 29.630 0.00 0.00 35.41 2.40
277 278 7.760131 TCATTAAGGAAAATACCGTAGAACG 57.240 36.000 0.00 0.00 42.11 3.95
278 279 7.546358 TCATTAAGGAAAATACCGTAGAACGA 58.454 34.615 0.15 0.00 46.05 3.85
279 280 8.199449 TCATTAAGGAAAATACCGTAGAACGAT 58.801 33.333 0.15 0.00 46.05 3.73
280 281 8.823818 CATTAAGGAAAATACCGTAGAACGATT 58.176 33.333 0.15 0.00 46.05 3.34
281 282 6.657836 AAGGAAAATACCGTAGAACGATTG 57.342 37.500 0.15 0.00 46.05 2.67
282 283 5.727434 AGGAAAATACCGTAGAACGATTGT 58.273 37.500 0.15 0.00 46.05 2.71
283 284 6.168389 AGGAAAATACCGTAGAACGATTGTT 58.832 36.000 0.00 0.00 46.05 2.83
284 285 6.312180 AGGAAAATACCGTAGAACGATTGTTC 59.688 38.462 16.86 16.86 46.05 3.18
295 296 2.955614 ACGATTGTTCTACGGTCAAGG 58.044 47.619 0.00 0.00 0.00 3.61
296 297 2.559668 ACGATTGTTCTACGGTCAAGGA 59.440 45.455 0.00 0.00 0.00 3.36
297 298 3.194968 ACGATTGTTCTACGGTCAAGGAT 59.805 43.478 0.00 0.00 0.00 3.24
298 299 3.797256 CGATTGTTCTACGGTCAAGGATC 59.203 47.826 0.00 0.00 0.00 3.36
299 300 4.676986 CGATTGTTCTACGGTCAAGGATCA 60.677 45.833 0.00 0.00 0.00 2.92
300 301 4.610605 TTGTTCTACGGTCAAGGATCAA 57.389 40.909 0.00 0.00 0.00 2.57
301 302 4.610605 TGTTCTACGGTCAAGGATCAAA 57.389 40.909 0.00 0.00 0.00 2.69
302 303 4.963373 TGTTCTACGGTCAAGGATCAAAA 58.037 39.130 0.00 0.00 0.00 2.44
303 304 5.369833 TGTTCTACGGTCAAGGATCAAAAA 58.630 37.500 0.00 0.00 0.00 1.94
322 323 3.998099 AAAAGAAAAGAGAGCACTGCC 57.002 42.857 0.00 0.00 0.00 4.85
323 324 1.902938 AAGAAAAGAGAGCACTGCCC 58.097 50.000 0.00 0.00 0.00 5.36
324 325 1.063183 AGAAAAGAGAGCACTGCCCT 58.937 50.000 0.00 0.00 0.00 5.19
325 326 1.163554 GAAAAGAGAGCACTGCCCTG 58.836 55.000 0.00 0.00 0.00 4.45
326 327 0.475906 AAAAGAGAGCACTGCCCTGT 59.524 50.000 0.00 0.00 0.00 4.00
327 328 0.036022 AAAGAGAGCACTGCCCTGTC 59.964 55.000 0.00 0.00 0.00 3.51
328 329 1.835927 AAGAGAGCACTGCCCTGTCC 61.836 60.000 0.00 0.00 0.00 4.02
329 330 2.527624 AGAGCACTGCCCTGTCCA 60.528 61.111 0.00 0.00 0.00 4.02
330 331 2.359230 GAGCACTGCCCTGTCCAC 60.359 66.667 0.00 0.00 0.00 4.02
331 332 3.170672 AGCACTGCCCTGTCCACA 61.171 61.111 0.00 0.00 0.00 4.17
332 333 2.203337 GCACTGCCCTGTCCACAA 60.203 61.111 0.00 0.00 0.00 3.33
333 334 2.263741 GCACTGCCCTGTCCACAAG 61.264 63.158 0.00 0.00 0.00 3.16
334 335 2.113986 ACTGCCCTGTCCACAAGC 59.886 61.111 0.00 0.00 0.00 4.01
335 336 3.052082 CTGCCCTGTCCACAAGCG 61.052 66.667 0.00 0.00 0.00 4.68
336 337 4.641645 TGCCCTGTCCACAAGCGG 62.642 66.667 0.00 0.00 0.00 5.52
338 339 4.641645 CCCTGTCCACAAGCGGCA 62.642 66.667 1.45 0.00 0.00 5.69
339 340 2.360350 CCTGTCCACAAGCGGCAT 60.360 61.111 1.45 0.00 0.00 4.40
340 341 1.973281 CCTGTCCACAAGCGGCATT 60.973 57.895 1.45 0.00 0.00 3.56
341 342 1.210931 CTGTCCACAAGCGGCATTG 59.789 57.895 1.45 6.68 36.22 2.82
342 343 2.126346 GTCCACAAGCGGCATTGC 60.126 61.111 1.45 0.00 33.28 3.56
344 345 2.126228 CCACAAGCGGCATTGCTG 60.126 61.111 13.28 13.28 46.60 4.41
345 346 2.628696 CCACAAGCGGCATTGCTGA 61.629 57.895 21.56 0.00 46.60 4.26
346 347 1.286570 CACAAGCGGCATTGCTGAA 59.713 52.632 21.56 0.00 46.60 3.02
347 348 0.318869 CACAAGCGGCATTGCTGAAA 60.319 50.000 21.56 0.00 46.60 2.69
348 349 0.388659 ACAAGCGGCATTGCTGAAAA 59.611 45.000 21.56 0.00 46.60 2.29
349 350 1.001181 ACAAGCGGCATTGCTGAAAAT 59.999 42.857 21.56 0.48 46.60 1.82
350 351 1.392168 CAAGCGGCATTGCTGAAAATG 59.608 47.619 21.56 9.27 46.60 2.32
351 352 0.889994 AGCGGCATTGCTGAAAATGA 59.110 45.000 21.56 0.00 45.28 2.57
352 353 1.273048 AGCGGCATTGCTGAAAATGAA 59.727 42.857 21.56 0.00 45.28 2.57
353 354 2.067766 GCGGCATTGCTGAAAATGAAA 58.932 42.857 21.56 0.00 39.46 2.69
354 355 2.159801 GCGGCATTGCTGAAAATGAAAC 60.160 45.455 21.56 0.00 39.46 2.78
355 356 2.412770 CGGCATTGCTGAAAATGAAACC 59.587 45.455 12.26 0.00 39.46 3.27
356 357 3.401182 GGCATTGCTGAAAATGAAACCA 58.599 40.909 8.82 0.00 39.46 3.67
357 358 4.004982 GGCATTGCTGAAAATGAAACCAT 58.995 39.130 8.82 0.00 39.46 3.55
358 359 4.093850 GGCATTGCTGAAAATGAAACCATC 59.906 41.667 8.82 0.00 39.46 3.51
359 360 4.093850 GCATTGCTGAAAATGAAACCATCC 59.906 41.667 0.16 0.00 39.46 3.51
360 361 3.959535 TGCTGAAAATGAAACCATCCC 57.040 42.857 0.00 0.00 0.00 3.85
361 362 2.566724 TGCTGAAAATGAAACCATCCCC 59.433 45.455 0.00 0.00 0.00 4.81
362 363 2.566724 GCTGAAAATGAAACCATCCCCA 59.433 45.455 0.00 0.00 0.00 4.96
363 364 3.617288 GCTGAAAATGAAACCATCCCCAC 60.617 47.826 0.00 0.00 0.00 4.61
364 365 2.560542 TGAAAATGAAACCATCCCCACG 59.439 45.455 0.00 0.00 0.00 4.94
365 366 1.555967 AAATGAAACCATCCCCACGG 58.444 50.000 0.00 0.00 0.00 4.94
366 367 0.324275 AATGAAACCATCCCCACGGG 60.324 55.000 0.00 0.00 46.11 5.28
367 368 1.506028 ATGAAACCATCCCCACGGGT 61.506 55.000 0.41 0.00 44.74 5.28
368 369 1.677633 GAAACCATCCCCACGGGTG 60.678 63.158 0.41 0.00 44.74 4.61
369 370 3.879180 AAACCATCCCCACGGGTGC 62.879 63.158 0.41 0.00 44.74 5.01
372 373 4.802051 CATCCCCACGGGTGCCAG 62.802 72.222 0.41 0.00 44.74 4.85
378 379 2.034066 CACGGGTGCCAGTGGATT 59.966 61.111 15.20 0.00 34.93 3.01
379 380 2.040544 CACGGGTGCCAGTGGATTC 61.041 63.158 15.20 1.50 34.93 2.52
380 381 2.224159 ACGGGTGCCAGTGGATTCT 61.224 57.895 15.20 0.00 0.00 2.40
381 382 1.450312 CGGGTGCCAGTGGATTCTC 60.450 63.158 15.20 0.62 0.00 2.87
382 383 1.685224 GGGTGCCAGTGGATTCTCA 59.315 57.895 15.20 0.00 0.00 3.27
383 384 0.038166 GGGTGCCAGTGGATTCTCAA 59.962 55.000 15.20 0.00 0.00 3.02
384 385 1.341383 GGGTGCCAGTGGATTCTCAAT 60.341 52.381 15.20 0.00 0.00 2.57
385 386 1.747355 GGTGCCAGTGGATTCTCAATG 59.253 52.381 15.20 0.00 33.14 2.82
386 387 1.133790 GTGCCAGTGGATTCTCAATGC 59.866 52.381 15.20 0.00 32.15 3.56
387 388 1.005097 TGCCAGTGGATTCTCAATGCT 59.995 47.619 15.20 0.00 32.15 3.79
388 389 2.239402 TGCCAGTGGATTCTCAATGCTA 59.761 45.455 15.20 0.00 32.15 3.49
389 390 2.615912 GCCAGTGGATTCTCAATGCTAC 59.384 50.000 15.20 0.00 32.15 3.58
390 391 3.877559 CCAGTGGATTCTCAATGCTACA 58.122 45.455 1.68 0.00 32.15 2.74
391 392 3.624861 CCAGTGGATTCTCAATGCTACAC 59.375 47.826 1.68 0.00 32.15 2.90
392 393 4.511527 CAGTGGATTCTCAATGCTACACT 58.488 43.478 0.00 0.00 38.35 3.55
393 394 4.940046 CAGTGGATTCTCAATGCTACACTT 59.060 41.667 0.00 0.00 35.93 3.16
394 395 5.413833 CAGTGGATTCTCAATGCTACACTTT 59.586 40.000 0.00 0.00 35.93 2.66
395 396 6.595326 CAGTGGATTCTCAATGCTACACTTTA 59.405 38.462 0.00 0.00 35.93 1.85
396 397 6.595716 AGTGGATTCTCAATGCTACACTTTAC 59.404 38.462 0.00 0.00 34.59 2.01
397 398 6.595716 GTGGATTCTCAATGCTACACTTTACT 59.404 38.462 0.00 0.00 0.00 2.24
398 399 7.119846 GTGGATTCTCAATGCTACACTTTACTT 59.880 37.037 0.00 0.00 0.00 2.24
399 400 7.334421 TGGATTCTCAATGCTACACTTTACTTC 59.666 37.037 0.00 0.00 0.00 3.01
400 401 7.334421 GGATTCTCAATGCTACACTTTACTTCA 59.666 37.037 0.00 0.00 0.00 3.02
401 402 8.621532 ATTCTCAATGCTACACTTTACTTCAA 57.378 30.769 0.00 0.00 0.00 2.69
402 403 7.658179 TCTCAATGCTACACTTTACTTCAAG 57.342 36.000 0.00 0.00 0.00 3.02
403 404 7.441836 TCTCAATGCTACACTTTACTTCAAGA 58.558 34.615 0.00 0.00 0.00 3.02
404 405 7.931407 TCTCAATGCTACACTTTACTTCAAGAA 59.069 33.333 0.00 0.00 0.00 2.52
405 406 8.087982 TCAATGCTACACTTTACTTCAAGAAG 57.912 34.615 8.22 8.22 43.79 2.85
406 407 7.931407 TCAATGCTACACTTTACTTCAAGAAGA 59.069 33.333 16.16 0.00 40.79 2.87
407 408 8.559536 CAATGCTACACTTTACTTCAAGAAGAA 58.440 33.333 16.16 4.19 40.79 2.52
408 409 8.677148 ATGCTACACTTTACTTCAAGAAGAAA 57.323 30.769 16.16 10.63 40.79 2.52
409 410 8.500753 TGCTACACTTTACTTCAAGAAGAAAA 57.499 30.769 16.16 7.38 40.79 2.29
410 411 8.395633 TGCTACACTTTACTTCAAGAAGAAAAC 58.604 33.333 16.16 0.00 40.79 2.43
411 412 8.613482 GCTACACTTTACTTCAAGAAGAAAACT 58.387 33.333 16.16 0.00 40.79 2.66
421 422 9.847224 ACTTCAAGAAGAAAACTATTAAGGTCA 57.153 29.630 16.16 0.00 40.79 4.02
423 424 9.621629 TTCAAGAAGAAAACTATTAAGGTCACA 57.378 29.630 0.00 0.00 32.05 3.58
424 425 9.793259 TCAAGAAGAAAACTATTAAGGTCACAT 57.207 29.630 0.00 0.00 0.00 3.21
431 432 9.931210 GAAAACTATTAAGGTCACATTTATCGG 57.069 33.333 0.00 0.00 0.00 4.18
432 433 7.492352 AACTATTAAGGTCACATTTATCGGC 57.508 36.000 0.00 0.00 0.00 5.54
433 434 5.995897 ACTATTAAGGTCACATTTATCGGCC 59.004 40.000 0.00 0.00 0.00 6.13
434 435 4.497291 TTAAGGTCACATTTATCGGCCT 57.503 40.909 0.00 0.00 0.00 5.19
435 436 2.332063 AGGTCACATTTATCGGCCTG 57.668 50.000 0.00 0.00 0.00 4.85
436 437 1.837439 AGGTCACATTTATCGGCCTGA 59.163 47.619 0.00 0.00 0.00 3.86
437 438 2.238646 AGGTCACATTTATCGGCCTGAA 59.761 45.455 0.00 0.00 0.00 3.02
438 439 3.013921 GGTCACATTTATCGGCCTGAAA 58.986 45.455 0.00 0.00 0.00 2.69
439 440 3.442273 GGTCACATTTATCGGCCTGAAAA 59.558 43.478 0.00 0.00 0.00 2.29
440 441 4.082463 GGTCACATTTATCGGCCTGAAAAA 60.082 41.667 0.00 0.00 0.00 1.94
503 504 8.801715 TTCAGAGTTGAAAGAAAATTATGCAC 57.198 30.769 0.00 0.00 40.26 4.57
504 505 7.939782 TCAGAGTTGAAAGAAAATTATGCACA 58.060 30.769 0.00 0.00 0.00 4.57
505 506 7.862372 TCAGAGTTGAAAGAAAATTATGCACAC 59.138 33.333 0.00 0.00 0.00 3.82
506 507 7.864379 CAGAGTTGAAAGAAAATTATGCACACT 59.136 33.333 0.00 0.00 0.00 3.55
507 508 8.078596 AGAGTTGAAAGAAAATTATGCACACTC 58.921 33.333 0.00 0.00 0.00 3.51
508 509 7.147976 AGTTGAAAGAAAATTATGCACACTCC 58.852 34.615 0.00 0.00 0.00 3.85
509 510 6.899393 TGAAAGAAAATTATGCACACTCCT 57.101 33.333 0.00 0.00 0.00 3.69
510 511 7.994425 TGAAAGAAAATTATGCACACTCCTA 57.006 32.000 0.00 0.00 0.00 2.94
511 512 8.402798 TGAAAGAAAATTATGCACACTCCTAA 57.597 30.769 0.00 0.00 0.00 2.69
512 513 8.855110 TGAAAGAAAATTATGCACACTCCTAAA 58.145 29.630 0.00 0.00 0.00 1.85
513 514 9.691362 GAAAGAAAATTATGCACACTCCTAAAA 57.309 29.630 0.00 0.00 0.00 1.52
515 516 9.643693 AAGAAAATTATGCACACTCCTAAAATG 57.356 29.630 0.00 0.00 0.00 2.32
516 517 8.806146 AGAAAATTATGCACACTCCTAAAATGT 58.194 29.630 0.00 0.00 0.00 2.71
517 518 8.761575 AAAATTATGCACACTCCTAAAATGTG 57.238 30.769 0.00 0.00 45.29 3.21
522 523 4.836125 CACACTCCTAAAATGTGCAACT 57.164 40.909 0.00 0.00 37.52 3.16
523 524 5.940192 CACACTCCTAAAATGTGCAACTA 57.060 39.130 0.00 0.00 37.52 2.24
524 525 6.312399 CACACTCCTAAAATGTGCAACTAA 57.688 37.500 0.00 0.00 37.52 2.24
525 526 6.142817 CACACTCCTAAAATGTGCAACTAAC 58.857 40.000 0.00 0.00 37.52 2.34
526 527 5.825679 ACACTCCTAAAATGTGCAACTAACA 59.174 36.000 0.00 0.00 38.04 2.41
527 528 6.142817 CACTCCTAAAATGTGCAACTAACAC 58.857 40.000 0.00 0.00 38.04 3.32
528 529 5.049680 ACTCCTAAAATGTGCAACTAACACG 60.050 40.000 0.00 0.00 41.03 4.49
529 530 5.057819 TCCTAAAATGTGCAACTAACACGA 58.942 37.500 0.00 0.00 41.03 4.35
530 531 5.049954 TCCTAAAATGTGCAACTAACACGAC 60.050 40.000 0.00 0.00 41.03 4.34
531 532 3.619233 AAATGTGCAACTAACACGACC 57.381 42.857 0.00 0.00 41.03 4.79
532 533 1.144969 ATGTGCAACTAACACGACCG 58.855 50.000 0.00 0.00 41.03 4.79
533 534 0.876777 TGTGCAACTAACACGACCGG 60.877 55.000 0.00 0.00 41.03 5.28
534 535 0.877213 GTGCAACTAACACGACCGGT 60.877 55.000 6.92 6.92 0.00 5.28
535 536 0.179078 TGCAACTAACACGACCGGTT 60.179 50.000 9.42 0.00 0.00 4.44
536 537 0.233848 GCAACTAACACGACCGGTTG 59.766 55.000 20.86 20.86 39.83 3.77
537 538 0.863144 CAACTAACACGACCGGTTGG 59.137 55.000 25.74 16.33 42.84 3.77
538 539 0.752054 AACTAACACGACCGGTTGGA 59.248 50.000 25.74 7.24 39.21 3.53
539 540 0.971386 ACTAACACGACCGGTTGGAT 59.029 50.000 25.74 13.26 39.21 3.41
540 541 2.170166 ACTAACACGACCGGTTGGATA 58.830 47.619 25.74 13.67 39.21 2.59
541 542 2.562298 ACTAACACGACCGGTTGGATAA 59.438 45.455 25.74 7.79 39.21 1.75
542 543 2.547299 AACACGACCGGTTGGATAAA 57.453 45.000 25.74 0.00 39.21 1.40
543 544 1.799544 ACACGACCGGTTGGATAAAC 58.200 50.000 25.74 0.82 39.21 2.01
544 545 1.345415 ACACGACCGGTTGGATAAACT 59.655 47.619 25.74 0.00 38.92 2.66
545 546 1.997606 CACGACCGGTTGGATAAACTC 59.002 52.381 25.74 0.00 38.92 3.01
546 547 1.619827 ACGACCGGTTGGATAAACTCA 59.380 47.619 25.74 0.00 38.92 3.41
547 548 2.037511 ACGACCGGTTGGATAAACTCAA 59.962 45.455 25.74 0.00 38.92 3.02
548 549 2.414138 CGACCGGTTGGATAAACTCAAC 59.586 50.000 14.66 0.00 41.61 3.18
549 550 2.414138 GACCGGTTGGATAAACTCAACG 59.586 50.000 9.42 0.00 42.81 4.10
550 551 1.129811 CCGGTTGGATAAACTCAACGC 59.870 52.381 0.00 0.00 42.81 4.84
551 552 2.073816 CGGTTGGATAAACTCAACGCT 58.926 47.619 0.00 0.00 42.81 5.07
552 553 2.482721 CGGTTGGATAAACTCAACGCTT 59.517 45.455 0.00 0.00 42.81 4.68
553 554 3.666902 CGGTTGGATAAACTCAACGCTTG 60.667 47.826 0.00 0.00 42.81 4.01
554 555 3.500680 GGTTGGATAAACTCAACGCTTGA 59.499 43.478 0.00 1.48 42.81 3.02
555 556 4.156008 GGTTGGATAAACTCAACGCTTGAT 59.844 41.667 0.00 0.00 42.81 2.57
556 557 5.353123 GGTTGGATAAACTCAACGCTTGATA 59.647 40.000 0.00 0.00 42.81 2.15
557 558 6.128117 GGTTGGATAAACTCAACGCTTGATAA 60.128 38.462 0.00 0.00 42.81 1.75
558 559 7.415206 GGTTGGATAAACTCAACGCTTGATAAT 60.415 37.037 0.00 0.00 42.81 1.28
559 560 7.246674 TGGATAAACTCAACGCTTGATAATC 57.753 36.000 1.76 3.65 39.30 1.75
560 561 6.821160 TGGATAAACTCAACGCTTGATAATCA 59.179 34.615 1.76 0.00 39.30 2.57
561 562 7.011389 TGGATAAACTCAACGCTTGATAATCAG 59.989 37.037 1.76 0.00 39.30 2.90
562 563 4.606457 AACTCAACGCTTGATAATCAGC 57.394 40.909 1.76 0.00 39.30 4.26
563 564 3.866651 ACTCAACGCTTGATAATCAGCT 58.133 40.909 1.76 0.00 39.30 4.24
564 565 4.256920 ACTCAACGCTTGATAATCAGCTT 58.743 39.130 0.00 0.00 39.30 3.74
565 566 4.697352 ACTCAACGCTTGATAATCAGCTTT 59.303 37.500 0.00 0.00 39.30 3.51
566 567 4.973396 TCAACGCTTGATAATCAGCTTTG 58.027 39.130 10.95 10.95 34.47 2.77
567 568 4.100529 CAACGCTTGATAATCAGCTTTGG 58.899 43.478 9.94 0.00 32.19 3.28
568 569 3.609853 ACGCTTGATAATCAGCTTTGGA 58.390 40.909 0.00 0.00 0.00 3.53
569 570 3.375299 ACGCTTGATAATCAGCTTTGGAC 59.625 43.478 0.00 0.00 0.00 4.02
570 571 3.624861 CGCTTGATAATCAGCTTTGGACT 59.375 43.478 0.00 0.00 0.00 3.85
571 572 4.095483 CGCTTGATAATCAGCTTTGGACTT 59.905 41.667 0.00 0.00 0.00 3.01
572 573 5.294306 CGCTTGATAATCAGCTTTGGACTTA 59.706 40.000 0.00 0.00 0.00 2.24
573 574 6.510799 CGCTTGATAATCAGCTTTGGACTTAG 60.511 42.308 0.00 0.00 0.00 2.18
574 575 6.540189 GCTTGATAATCAGCTTTGGACTTAGA 59.460 38.462 0.00 0.00 0.00 2.10
601 602 9.675464 AATAATAATTTCCAAGTCCACGTAGAA 57.325 29.630 0.00 0.00 0.00 2.10
602 603 7.611213 AATAATTTCCAAGTCCACGTAGAAG 57.389 36.000 0.00 0.00 0.00 2.85
604 605 1.334160 TCCAAGTCCACGTAGAAGCA 58.666 50.000 0.00 0.00 0.00 3.91
605 606 1.689813 TCCAAGTCCACGTAGAAGCAA 59.310 47.619 0.00 0.00 0.00 3.91
606 607 1.798813 CCAAGTCCACGTAGAAGCAAC 59.201 52.381 0.00 0.00 0.00 4.17
607 608 1.798813 CAAGTCCACGTAGAAGCAACC 59.201 52.381 0.00 0.00 0.00 3.77
609 610 1.145803 GTCCACGTAGAAGCAACCAC 58.854 55.000 0.00 0.00 0.00 4.16
633 635 5.097234 TCCCATAATCCAACCCAACAAATT 58.903 37.500 0.00 0.00 0.00 1.82
648 650 6.128580 CCCAACAAATTATTCGGAAGCTTTTG 60.129 38.462 0.00 14.99 0.00 2.44
655 663 0.387565 TCGGAAGCTTTTGTTTGGCC 59.612 50.000 0.00 0.00 0.00 5.36
656 664 0.103937 CGGAAGCTTTTGTTTGGCCA 59.896 50.000 0.00 0.00 0.00 5.36
668 676 7.401955 TTTTGTTTGGCCAGAAAAATGATTT 57.598 28.000 12.20 0.00 0.00 2.17
672 680 7.153985 TGTTTGGCCAGAAAAATGATTTAGAG 58.846 34.615 5.11 0.00 0.00 2.43
673 681 5.920193 TGGCCAGAAAAATGATTTAGAGG 57.080 39.130 0.00 0.00 0.00 3.69
674 682 4.160252 TGGCCAGAAAAATGATTTAGAGGC 59.840 41.667 0.00 12.31 37.62 4.70
675 683 4.403752 GGCCAGAAAAATGATTTAGAGGCT 59.596 41.667 17.16 0.00 38.05 4.58
693 701 3.775661 GCTAGCTAGCTCTATAGTGGC 57.224 52.381 33.71 5.40 45.62 5.01
759 772 7.172875 CACCTATGACCAATTGATTCTCTCATC 59.827 40.741 7.12 0.00 32.72 2.92
775 788 7.927683 TCTCTCATCTAATCCTCCTTTGATT 57.072 36.000 0.00 0.00 36.46 2.57
848 861 0.179116 CTGAGCTCTGACCCATCACG 60.179 60.000 16.19 0.00 0.00 4.35
934 953 7.737607 TCCACTCCAATAATATATACCACCACT 59.262 37.037 0.00 0.00 0.00 4.00
970 989 1.075970 TCAGCTGGATAGAGCCGGT 60.076 57.895 15.13 0.00 40.08 5.28
1391 1412 0.038744 ATGGTGACTTTCCAGCCCTG 59.961 55.000 0.00 0.00 38.42 4.45
1578 1607 9.627395 ATCAATTACTACGTGCTTGAGATATAC 57.373 33.333 0.00 0.00 30.13 1.47
1644 1673 6.452242 TCACGGTATTACTCGCATTTCATAT 58.548 36.000 5.10 0.00 0.00 1.78
1646 1675 6.145534 CACGGTATTACTCGCATTTCATATGT 59.854 38.462 1.90 0.00 0.00 2.29
1703 1732 1.153686 GACTAGGTTCGGTTCCGGC 60.154 63.158 11.37 5.03 0.00 6.13
1720 1749 1.226974 GCCGCTCTCAGCATCGTTA 60.227 57.895 0.00 0.00 42.58 3.18
1729 1758 3.506067 TCTCAGCATCGTTACTCTGTTGA 59.494 43.478 0.00 2.11 0.00 3.18
1755 1784 3.618774 GTGTACGGAGACACGATCC 57.381 57.895 0.00 0.00 40.33 3.36
1756 1785 0.806868 GTGTACGGAGACACGATCCA 59.193 55.000 0.00 0.00 40.33 3.41
1815 1845 0.608640 AAGTCGATCTTCAAGGGCGT 59.391 50.000 0.00 0.00 0.00 5.68
1906 1936 4.016444 TCGCCAATCTCTTTTAGGCATTT 58.984 39.130 0.00 0.00 45.47 2.32
1907 1937 4.462483 TCGCCAATCTCTTTTAGGCATTTT 59.538 37.500 0.00 0.00 45.47 1.82
1924 1954 0.113972 TTTCATGGGTGGATGGTGCA 59.886 50.000 0.00 0.00 0.00 4.57
1996 2026 1.603678 GGTCGAGACACGGCTTTGTAA 60.604 52.381 5.55 0.00 46.52 2.41
2010 2040 6.433093 ACGGCTTTGTAATTCAGTTTAGGATT 59.567 34.615 0.00 0.00 0.00 3.01
2024 2054 1.080638 AGGATTGGCCCCTTGTGTTA 58.919 50.000 0.00 0.00 37.37 2.41
2199 3327 4.813027 TGATACGTTTGGGTGTACTCTTC 58.187 43.478 0.00 0.00 0.00 2.87
2228 3383 5.664294 TCCACCTAAACTCGCACTAATTA 57.336 39.130 0.00 0.00 0.00 1.40
2328 3483 1.825474 CCCATCGGGCTAGTATAGGTG 59.175 57.143 0.00 0.00 39.70 4.00
2352 3507 3.924576 AACAAACTGTTGGGCTCCT 57.075 47.368 0.00 0.00 39.45 3.69
2375 3530 3.483808 TTTTTGAACTTTCCCCATGGC 57.516 42.857 6.09 0.00 0.00 4.40
2402 3557 6.038936 TCGAAAGATTTTCCGGTTTTCTTTCT 59.961 34.615 28.16 13.53 45.02 2.52
2403 3558 7.227116 TCGAAAGATTTTCCGGTTTTCTTTCTA 59.773 33.333 28.16 22.08 45.02 2.10
2404 3559 8.021396 CGAAAGATTTTCCGGTTTTCTTTCTAT 58.979 33.333 28.16 11.93 45.02 1.98
2405 3560 9.692749 GAAAGATTTTCCGGTTTTCTTTCTATT 57.307 29.630 26.34 10.12 44.36 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.400213 TTCCGGACAGACCAAATGCT 59.600 50.000 1.83 0.00 38.90 3.79
1 2 1.133025 CATTCCGGACAGACCAAATGC 59.867 52.381 1.83 0.00 35.87 3.56
2 3 2.420022 GTCATTCCGGACAGACCAAATG 59.580 50.000 19.89 11.97 40.15 2.32
4 5 1.418264 TGTCATTCCGGACAGACCAAA 59.582 47.619 24.92 10.22 42.56 3.28
6 7 2.753319 TGTCATTCCGGACAGACCA 58.247 52.632 24.92 14.50 42.56 4.02
11 12 2.649531 AGGTTTTGTCATTCCGGACA 57.350 45.000 1.83 0.00 45.54 4.02
12 13 2.882137 TGAAGGTTTTGTCATTCCGGAC 59.118 45.455 1.83 0.00 38.29 4.79
13 14 3.146066 CTGAAGGTTTTGTCATTCCGGA 58.854 45.455 0.00 0.00 0.00 5.14
14 15 3.146066 TCTGAAGGTTTTGTCATTCCGG 58.854 45.455 0.00 0.00 0.00 5.14
15 16 3.365364 GCTCTGAAGGTTTTGTCATTCCG 60.365 47.826 0.00 0.00 0.00 4.30
16 17 3.569701 TGCTCTGAAGGTTTTGTCATTCC 59.430 43.478 0.00 0.00 0.00 3.01
17 18 4.791974 CTGCTCTGAAGGTTTTGTCATTC 58.208 43.478 0.00 0.00 0.00 2.67
18 19 3.005155 GCTGCTCTGAAGGTTTTGTCATT 59.995 43.478 0.00 0.00 0.00 2.57
19 20 2.555757 GCTGCTCTGAAGGTTTTGTCAT 59.444 45.455 0.00 0.00 0.00 3.06
20 21 1.949525 GCTGCTCTGAAGGTTTTGTCA 59.050 47.619 0.00 0.00 0.00 3.58
21 22 1.949525 TGCTGCTCTGAAGGTTTTGTC 59.050 47.619 0.00 0.00 0.00 3.18
22 23 1.952296 CTGCTGCTCTGAAGGTTTTGT 59.048 47.619 0.00 0.00 0.00 2.83
23 24 1.335689 GCTGCTGCTCTGAAGGTTTTG 60.336 52.381 8.53 0.00 36.03 2.44
24 25 0.957362 GCTGCTGCTCTGAAGGTTTT 59.043 50.000 8.53 0.00 36.03 2.43
25 26 0.179009 TGCTGCTGCTCTGAAGGTTT 60.179 50.000 17.00 0.00 40.48 3.27
26 27 0.037877 ATGCTGCTGCTCTGAAGGTT 59.962 50.000 17.00 0.00 40.48 3.50
27 28 0.392729 GATGCTGCTGCTCTGAAGGT 60.393 55.000 17.00 0.00 40.48 3.50
28 29 0.392595 TGATGCTGCTGCTCTGAAGG 60.393 55.000 17.00 0.00 40.48 3.46
29 30 0.727970 GTGATGCTGCTGCTCTGAAG 59.272 55.000 17.00 0.00 40.48 3.02
30 31 0.035739 TGTGATGCTGCTGCTCTGAA 59.964 50.000 17.00 0.00 40.48 3.02
31 32 0.252197 ATGTGATGCTGCTGCTCTGA 59.748 50.000 17.00 0.00 40.48 3.27
32 33 1.095600 AATGTGATGCTGCTGCTCTG 58.904 50.000 17.00 0.00 40.48 3.35
33 34 1.835494 AAATGTGATGCTGCTGCTCT 58.165 45.000 17.00 4.08 40.48 4.09
34 35 2.033049 CCTAAATGTGATGCTGCTGCTC 59.967 50.000 17.00 11.64 40.48 4.26
35 36 2.022195 CCTAAATGTGATGCTGCTGCT 58.978 47.619 17.00 2.26 40.48 4.24
36 37 1.535437 GCCTAAATGTGATGCTGCTGC 60.535 52.381 8.89 8.89 40.20 5.25
37 38 1.746787 TGCCTAAATGTGATGCTGCTG 59.253 47.619 0.00 0.00 0.00 4.41
38 39 2.133281 TGCCTAAATGTGATGCTGCT 57.867 45.000 0.00 0.00 0.00 4.24
39 40 2.621998 AGATGCCTAAATGTGATGCTGC 59.378 45.455 0.00 0.00 0.00 5.25
40 41 3.004419 CCAGATGCCTAAATGTGATGCTG 59.996 47.826 0.00 0.00 0.00 4.41
41 42 3.117776 TCCAGATGCCTAAATGTGATGCT 60.118 43.478 0.00 0.00 0.00 3.79
42 43 3.216800 TCCAGATGCCTAAATGTGATGC 58.783 45.455 0.00 0.00 0.00 3.91
43 44 4.885907 ACTTCCAGATGCCTAAATGTGATG 59.114 41.667 0.00 0.00 0.00 3.07
44 45 5.121380 ACTTCCAGATGCCTAAATGTGAT 57.879 39.130 0.00 0.00 0.00 3.06
45 46 4.574674 ACTTCCAGATGCCTAAATGTGA 57.425 40.909 0.00 0.00 0.00 3.58
46 47 4.946157 AGAACTTCCAGATGCCTAAATGTG 59.054 41.667 0.00 0.00 0.00 3.21
47 48 5.184892 AGAACTTCCAGATGCCTAAATGT 57.815 39.130 0.00 0.00 0.00 2.71
48 49 7.172875 CAGATAGAACTTCCAGATGCCTAAATG 59.827 40.741 0.00 0.00 0.00 2.32
49 50 7.222872 CAGATAGAACTTCCAGATGCCTAAAT 58.777 38.462 0.00 0.00 0.00 1.40
50 51 6.408548 CCAGATAGAACTTCCAGATGCCTAAA 60.409 42.308 0.00 0.00 0.00 1.85
51 52 5.070981 CCAGATAGAACTTCCAGATGCCTAA 59.929 44.000 0.00 0.00 0.00 2.69
52 53 4.590647 CCAGATAGAACTTCCAGATGCCTA 59.409 45.833 0.00 0.00 0.00 3.93
53 54 3.390639 CCAGATAGAACTTCCAGATGCCT 59.609 47.826 0.00 0.00 0.00 4.75
54 55 3.389329 TCCAGATAGAACTTCCAGATGCC 59.611 47.826 0.00 0.00 0.00 4.40
55 56 4.502950 CCTCCAGATAGAACTTCCAGATGC 60.503 50.000 0.00 0.00 0.00 3.91
56 57 4.898265 TCCTCCAGATAGAACTTCCAGATG 59.102 45.833 0.00 0.00 0.00 2.90
57 58 5.149584 TCCTCCAGATAGAACTTCCAGAT 57.850 43.478 0.00 0.00 0.00 2.90
58 59 4.609866 TCCTCCAGATAGAACTTCCAGA 57.390 45.455 0.00 0.00 0.00 3.86
59 60 4.440802 CGTTCCTCCAGATAGAACTTCCAG 60.441 50.000 0.00 0.00 38.17 3.86
60 61 3.447586 CGTTCCTCCAGATAGAACTTCCA 59.552 47.826 0.00 0.00 38.17 3.53
61 62 3.700038 TCGTTCCTCCAGATAGAACTTCC 59.300 47.826 0.00 0.00 38.17 3.46
62 63 4.985538 TCGTTCCTCCAGATAGAACTTC 57.014 45.455 0.00 0.00 38.17 3.01
63 64 5.941555 AATCGTTCCTCCAGATAGAACTT 57.058 39.130 0.00 0.00 38.17 2.66
64 65 6.015010 CCATAATCGTTCCTCCAGATAGAACT 60.015 42.308 0.00 0.00 38.17 3.01
65 66 6.159988 CCATAATCGTTCCTCCAGATAGAAC 58.840 44.000 0.00 0.00 37.20 3.01
66 67 5.246203 CCCATAATCGTTCCTCCAGATAGAA 59.754 44.000 0.00 0.00 0.00 2.10
67 68 4.772624 CCCATAATCGTTCCTCCAGATAGA 59.227 45.833 0.00 0.00 0.00 1.98
68 69 4.772624 TCCCATAATCGTTCCTCCAGATAG 59.227 45.833 0.00 0.00 0.00 2.08
69 70 4.747583 TCCCATAATCGTTCCTCCAGATA 58.252 43.478 0.00 0.00 0.00 1.98
70 71 3.587498 TCCCATAATCGTTCCTCCAGAT 58.413 45.455 0.00 0.00 0.00 2.90
71 72 3.040655 TCCCATAATCGTTCCTCCAGA 57.959 47.619 0.00 0.00 0.00 3.86
72 73 3.733337 CTTCCCATAATCGTTCCTCCAG 58.267 50.000 0.00 0.00 0.00 3.86
73 74 2.158813 GCTTCCCATAATCGTTCCTCCA 60.159 50.000 0.00 0.00 0.00 3.86
74 75 2.158813 TGCTTCCCATAATCGTTCCTCC 60.159 50.000 0.00 0.00 0.00 4.30
75 76 2.872858 GTGCTTCCCATAATCGTTCCTC 59.127 50.000 0.00 0.00 0.00 3.71
76 77 2.238646 TGTGCTTCCCATAATCGTTCCT 59.761 45.455 0.00 0.00 0.00 3.36
77 78 2.614057 CTGTGCTTCCCATAATCGTTCC 59.386 50.000 0.00 0.00 0.00 3.62
78 79 2.032178 GCTGTGCTTCCCATAATCGTTC 59.968 50.000 0.00 0.00 0.00 3.95
79 80 2.017049 GCTGTGCTTCCCATAATCGTT 58.983 47.619 0.00 0.00 0.00 3.85
80 81 1.210478 AGCTGTGCTTCCCATAATCGT 59.790 47.619 0.00 0.00 33.89 3.73
81 82 1.869767 GAGCTGTGCTTCCCATAATCG 59.130 52.381 0.00 0.00 39.88 3.34
82 83 2.877168 CTGAGCTGTGCTTCCCATAATC 59.123 50.000 0.00 0.00 39.88 1.75
83 84 2.422519 CCTGAGCTGTGCTTCCCATAAT 60.423 50.000 0.00 0.00 39.88 1.28
84 85 1.065199 CCTGAGCTGTGCTTCCCATAA 60.065 52.381 0.00 0.00 39.88 1.90
85 86 0.543277 CCTGAGCTGTGCTTCCCATA 59.457 55.000 0.00 0.00 39.88 2.74
86 87 1.302285 CCTGAGCTGTGCTTCCCAT 59.698 57.895 0.00 0.00 39.88 4.00
87 88 2.752358 CCTGAGCTGTGCTTCCCA 59.248 61.111 0.00 0.00 39.88 4.37
88 89 2.045536 CCCTGAGCTGTGCTTCCC 60.046 66.667 0.00 0.00 39.88 3.97
89 90 2.749441 GCCCTGAGCTGTGCTTCC 60.749 66.667 0.00 0.00 39.88 3.46
90 91 1.174712 TTTGCCCTGAGCTGTGCTTC 61.175 55.000 0.00 0.00 39.88 3.86
91 92 0.756442 TTTTGCCCTGAGCTGTGCTT 60.756 50.000 0.00 0.00 39.88 3.91
92 93 1.152694 TTTTGCCCTGAGCTGTGCT 60.153 52.632 0.00 0.00 43.88 4.40
93 94 1.174712 TCTTTTGCCCTGAGCTGTGC 61.175 55.000 0.00 0.00 44.23 4.57
94 95 1.268899 CTTCTTTTGCCCTGAGCTGTG 59.731 52.381 0.00 0.00 44.23 3.66
95 96 1.613836 CTTCTTTTGCCCTGAGCTGT 58.386 50.000 0.00 0.00 44.23 4.40
96 97 0.886563 CCTTCTTTTGCCCTGAGCTG 59.113 55.000 0.00 0.00 44.23 4.24
97 98 0.897401 GCCTTCTTTTGCCCTGAGCT 60.897 55.000 0.00 0.00 44.23 4.09
98 99 1.181098 TGCCTTCTTTTGCCCTGAGC 61.181 55.000 0.00 0.00 44.14 4.26
99 100 1.331214 TTGCCTTCTTTTGCCCTGAG 58.669 50.000 0.00 0.00 0.00 3.35
100 101 1.688197 CTTTGCCTTCTTTTGCCCTGA 59.312 47.619 0.00 0.00 0.00 3.86
101 102 1.875157 GCTTTGCCTTCTTTTGCCCTG 60.875 52.381 0.00 0.00 0.00 4.45
102 103 0.394192 GCTTTGCCTTCTTTTGCCCT 59.606 50.000 0.00 0.00 0.00 5.19
103 104 0.106521 TGCTTTGCCTTCTTTTGCCC 59.893 50.000 0.00 0.00 0.00 5.36
104 105 1.069049 TCTGCTTTGCCTTCTTTTGCC 59.931 47.619 0.00 0.00 0.00 4.52
105 106 2.514205 TCTGCTTTGCCTTCTTTTGC 57.486 45.000 0.00 0.00 0.00 3.68
106 107 3.784338 TGTTCTGCTTTGCCTTCTTTTG 58.216 40.909 0.00 0.00 0.00 2.44
107 108 3.739209 GCTGTTCTGCTTTGCCTTCTTTT 60.739 43.478 0.00 0.00 0.00 2.27
108 109 2.223900 GCTGTTCTGCTTTGCCTTCTTT 60.224 45.455 0.00 0.00 0.00 2.52
109 110 1.339291 GCTGTTCTGCTTTGCCTTCTT 59.661 47.619 0.00 0.00 0.00 2.52
110 111 0.957362 GCTGTTCTGCTTTGCCTTCT 59.043 50.000 0.00 0.00 0.00 2.85
111 112 0.957362 AGCTGTTCTGCTTTGCCTTC 59.043 50.000 0.00 0.00 40.93 3.46
112 113 0.957362 GAGCTGTTCTGCTTTGCCTT 59.043 50.000 0.00 0.00 44.17 4.35
113 114 0.179009 TGAGCTGTTCTGCTTTGCCT 60.179 50.000 0.00 0.00 44.17 4.75
114 115 0.670162 TTGAGCTGTTCTGCTTTGCC 59.330 50.000 0.00 0.00 44.17 4.52
115 116 1.336125 ACTTGAGCTGTTCTGCTTTGC 59.664 47.619 0.00 0.00 44.17 3.68
116 117 2.877168 AGACTTGAGCTGTTCTGCTTTG 59.123 45.455 0.00 3.02 44.17 2.77
117 118 2.877168 CAGACTTGAGCTGTTCTGCTTT 59.123 45.455 0.00 0.00 44.17 3.51
118 119 2.492012 CAGACTTGAGCTGTTCTGCTT 58.508 47.619 0.00 0.00 44.17 3.91
120 121 1.155042 CCAGACTTGAGCTGTTCTGC 58.845 55.000 0.00 0.00 0.00 4.26
121 122 1.071385 ACCCAGACTTGAGCTGTTCTG 59.929 52.381 0.00 0.00 0.00 3.02
122 123 1.346068 GACCCAGACTTGAGCTGTTCT 59.654 52.381 0.00 0.00 0.00 3.01
123 124 1.802069 GACCCAGACTTGAGCTGTTC 58.198 55.000 0.00 0.00 0.00 3.18
124 125 0.034059 CGACCCAGACTTGAGCTGTT 59.966 55.000 0.00 0.00 0.00 3.16
125 126 1.668294 CGACCCAGACTTGAGCTGT 59.332 57.895 0.00 0.00 0.00 4.40
126 127 1.079543 CCGACCCAGACTTGAGCTG 60.080 63.158 0.00 0.00 0.00 4.24
127 128 0.832135 TTCCGACCCAGACTTGAGCT 60.832 55.000 0.00 0.00 0.00 4.09
128 129 0.670854 GTTCCGACCCAGACTTGAGC 60.671 60.000 0.00 0.00 0.00 4.26
129 130 0.679505 TGTTCCGACCCAGACTTGAG 59.320 55.000 0.00 0.00 0.00 3.02
130 131 1.124780 TTGTTCCGACCCAGACTTGA 58.875 50.000 0.00 0.00 0.00 3.02
131 132 2.185004 ATTGTTCCGACCCAGACTTG 57.815 50.000 0.00 0.00 0.00 3.16
132 133 2.951229 AATTGTTCCGACCCAGACTT 57.049 45.000 0.00 0.00 0.00 3.01
133 134 2.372172 AGAAATTGTTCCGACCCAGACT 59.628 45.455 0.00 0.00 33.92 3.24
134 135 2.484264 CAGAAATTGTTCCGACCCAGAC 59.516 50.000 0.00 0.00 33.92 3.51
135 136 2.105821 ACAGAAATTGTTCCGACCCAGA 59.894 45.455 0.00 0.00 36.31 3.86
136 137 2.504367 ACAGAAATTGTTCCGACCCAG 58.496 47.619 0.00 0.00 36.31 4.45
137 138 2.649531 ACAGAAATTGTTCCGACCCA 57.350 45.000 0.00 0.00 36.31 4.51
138 139 6.540914 TCATATTACAGAAATTGTTCCGACCC 59.459 38.462 0.00 0.00 41.29 4.46
139 140 7.548196 TCATATTACAGAAATTGTTCCGACC 57.452 36.000 0.00 0.00 41.29 4.79
152 153 9.639601 GGAACATCACGATAATCATATTACAGA 57.360 33.333 0.00 0.00 0.00 3.41
153 154 8.873830 GGGAACATCACGATAATCATATTACAG 58.126 37.037 0.00 0.00 0.00 2.74
154 155 8.593679 AGGGAACATCACGATAATCATATTACA 58.406 33.333 0.00 0.00 0.00 2.41
157 158 9.035890 TCTAGGGAACATCACGATAATCATATT 57.964 33.333 0.00 0.00 0.00 1.28
158 159 8.595362 TCTAGGGAACATCACGATAATCATAT 57.405 34.615 0.00 0.00 0.00 1.78
159 160 7.363007 GCTCTAGGGAACATCACGATAATCATA 60.363 40.741 0.00 0.00 0.00 2.15
160 161 6.573289 GCTCTAGGGAACATCACGATAATCAT 60.573 42.308 0.00 0.00 0.00 2.45
161 162 5.279006 GCTCTAGGGAACATCACGATAATCA 60.279 44.000 0.00 0.00 0.00 2.57
162 163 5.047660 AGCTCTAGGGAACATCACGATAATC 60.048 44.000 0.00 0.00 0.00 1.75
163 164 4.835615 AGCTCTAGGGAACATCACGATAAT 59.164 41.667 0.00 0.00 0.00 1.28
164 165 4.038042 CAGCTCTAGGGAACATCACGATAA 59.962 45.833 0.00 0.00 0.00 1.75
165 166 3.570125 CAGCTCTAGGGAACATCACGATA 59.430 47.826 0.00 0.00 0.00 2.92
166 167 2.363680 CAGCTCTAGGGAACATCACGAT 59.636 50.000 0.00 0.00 0.00 3.73
167 168 1.751351 CAGCTCTAGGGAACATCACGA 59.249 52.381 0.00 0.00 0.00 4.35
168 169 1.202463 CCAGCTCTAGGGAACATCACG 60.202 57.143 0.00 0.00 0.00 4.35
169 170 1.474143 GCCAGCTCTAGGGAACATCAC 60.474 57.143 0.00 0.00 0.00 3.06
170 171 0.833287 GCCAGCTCTAGGGAACATCA 59.167 55.000 0.00 0.00 0.00 3.07
171 172 0.833287 TGCCAGCTCTAGGGAACATC 59.167 55.000 0.00 0.00 0.00 3.06
172 173 1.516110 ATGCCAGCTCTAGGGAACAT 58.484 50.000 0.00 0.00 0.00 2.71
173 174 1.065199 CAATGCCAGCTCTAGGGAACA 60.065 52.381 0.00 0.00 0.00 3.18
174 175 1.673168 CAATGCCAGCTCTAGGGAAC 58.327 55.000 0.00 0.00 0.00 3.62
175 176 0.548031 CCAATGCCAGCTCTAGGGAA 59.452 55.000 0.00 0.00 0.00 3.97
176 177 0.621571 ACCAATGCCAGCTCTAGGGA 60.622 55.000 0.00 0.00 0.00 4.20
177 178 0.257039 AACCAATGCCAGCTCTAGGG 59.743 55.000 0.00 0.00 0.00 3.53
178 179 1.065199 TCAACCAATGCCAGCTCTAGG 60.065 52.381 0.00 0.00 0.00 3.02
179 180 2.408271 TCAACCAATGCCAGCTCTAG 57.592 50.000 0.00 0.00 0.00 2.43
180 181 3.370840 AATCAACCAATGCCAGCTCTA 57.629 42.857 0.00 0.00 0.00 2.43
181 182 2.226962 AATCAACCAATGCCAGCTCT 57.773 45.000 0.00 0.00 0.00 4.09
182 183 3.323751 AAAATCAACCAATGCCAGCTC 57.676 42.857 0.00 0.00 0.00 4.09
183 184 3.775261 AAAAATCAACCAATGCCAGCT 57.225 38.095 0.00 0.00 0.00 4.24
184 185 3.684305 GGTAAAAATCAACCAATGCCAGC 59.316 43.478 0.00 0.00 35.73 4.85
185 186 5.151297 AGGTAAAAATCAACCAATGCCAG 57.849 39.130 0.00 0.00 38.30 4.85
186 187 5.559148 AAGGTAAAAATCAACCAATGCCA 57.441 34.783 0.00 0.00 38.30 4.92
187 188 8.040727 AGATAAAGGTAAAAATCAACCAATGCC 58.959 33.333 0.00 0.00 38.30 4.40
188 189 9.435688 AAGATAAAGGTAAAAATCAACCAATGC 57.564 29.630 0.00 0.00 38.30 3.56
251 252 8.823818 CGTTCTACGGTATTTTCCTTAATGAAT 58.176 33.333 0.00 0.00 38.08 2.57
252 253 8.034215 TCGTTCTACGGTATTTTCCTTAATGAA 58.966 33.333 0.00 0.00 42.81 2.57
253 254 7.546358 TCGTTCTACGGTATTTTCCTTAATGA 58.454 34.615 0.00 0.00 42.81 2.57
254 255 7.760131 TCGTTCTACGGTATTTTCCTTAATG 57.240 36.000 0.00 0.00 42.81 1.90
255 256 8.823818 CAATCGTTCTACGGTATTTTCCTTAAT 58.176 33.333 0.00 0.00 42.81 1.40
256 257 7.818930 ACAATCGTTCTACGGTATTTTCCTTAA 59.181 33.333 0.00 0.00 42.81 1.85
257 258 7.322664 ACAATCGTTCTACGGTATTTTCCTTA 58.677 34.615 0.00 0.00 42.81 2.69
258 259 6.168389 ACAATCGTTCTACGGTATTTTCCTT 58.832 36.000 0.00 0.00 42.81 3.36
259 260 5.727434 ACAATCGTTCTACGGTATTTTCCT 58.273 37.500 0.00 0.00 42.81 3.36
260 261 6.413018 AACAATCGTTCTACGGTATTTTCC 57.587 37.500 0.00 0.00 42.81 3.13
274 275 3.006110 TCCTTGACCGTAGAACAATCGTT 59.994 43.478 0.00 0.00 38.33 3.85
275 276 2.559668 TCCTTGACCGTAGAACAATCGT 59.440 45.455 0.00 0.00 0.00 3.73
276 277 3.226346 TCCTTGACCGTAGAACAATCG 57.774 47.619 0.00 0.00 0.00 3.34
277 278 4.755411 TGATCCTTGACCGTAGAACAATC 58.245 43.478 0.00 0.00 0.00 2.67
278 279 4.819105 TGATCCTTGACCGTAGAACAAT 57.181 40.909 0.00 0.00 0.00 2.71
279 280 4.610605 TTGATCCTTGACCGTAGAACAA 57.389 40.909 0.00 0.00 0.00 2.83
280 281 4.610605 TTTGATCCTTGACCGTAGAACA 57.389 40.909 0.00 0.00 0.00 3.18
281 282 5.934935 TTTTTGATCCTTGACCGTAGAAC 57.065 39.130 0.00 0.00 0.00 3.01
301 302 3.068732 GGGCAGTGCTCTCTTTTCTTTTT 59.931 43.478 16.11 0.00 0.00 1.94
302 303 2.625314 GGGCAGTGCTCTCTTTTCTTTT 59.375 45.455 16.11 0.00 0.00 2.27
303 304 2.158549 AGGGCAGTGCTCTCTTTTCTTT 60.159 45.455 13.10 0.00 31.40 2.52
304 305 1.423161 AGGGCAGTGCTCTCTTTTCTT 59.577 47.619 13.10 0.00 31.40 2.52
305 306 1.063183 AGGGCAGTGCTCTCTTTTCT 58.937 50.000 13.10 0.00 31.40 2.52
306 307 1.163554 CAGGGCAGTGCTCTCTTTTC 58.836 55.000 16.61 0.00 37.20 2.29
307 308 0.475906 ACAGGGCAGTGCTCTCTTTT 59.524 50.000 16.61 0.00 37.20 2.27
308 309 0.036022 GACAGGGCAGTGCTCTCTTT 59.964 55.000 16.61 1.60 37.20 2.52
309 310 1.676384 GACAGGGCAGTGCTCTCTT 59.324 57.895 16.61 4.66 37.20 2.85
310 311 2.289532 GGACAGGGCAGTGCTCTCT 61.290 63.158 16.61 2.45 37.20 3.10
311 312 2.267324 GGACAGGGCAGTGCTCTC 59.733 66.667 16.61 4.91 37.20 3.20
312 313 2.527624 TGGACAGGGCAGTGCTCT 60.528 61.111 13.10 13.10 41.75 4.09
313 314 2.359230 GTGGACAGGGCAGTGCTC 60.359 66.667 16.11 11.96 0.00 4.26
314 315 2.687418 CTTGTGGACAGGGCAGTGCT 62.687 60.000 16.11 0.00 0.00 4.40
315 316 2.203337 TTGTGGACAGGGCAGTGC 60.203 61.111 6.55 6.55 0.00 4.40
316 317 2.263741 GCTTGTGGACAGGGCAGTG 61.264 63.158 0.00 0.00 0.00 3.66
317 318 2.113986 GCTTGTGGACAGGGCAGT 59.886 61.111 0.00 0.00 0.00 4.40
318 319 3.052082 CGCTTGTGGACAGGGCAG 61.052 66.667 0.00 0.00 0.00 4.85
319 320 4.641645 CCGCTTGTGGACAGGGCA 62.642 66.667 0.00 0.00 0.00 5.36
321 322 3.925630 ATGCCGCTTGTGGACAGGG 62.926 63.158 4.17 0.00 0.00 4.45
322 323 1.973281 AATGCCGCTTGTGGACAGG 60.973 57.895 4.17 0.00 0.00 4.00
323 324 1.210931 CAATGCCGCTTGTGGACAG 59.789 57.895 4.17 0.00 0.00 3.51
324 325 2.918345 GCAATGCCGCTTGTGGACA 61.918 57.895 4.17 2.49 0.00 4.02
325 326 2.126346 GCAATGCCGCTTGTGGAC 60.126 61.111 4.17 0.00 0.00 4.02
326 327 2.282391 AGCAATGCCGCTTGTGGA 60.282 55.556 0.00 0.00 39.99 4.02
327 328 2.126228 CAGCAATGCCGCTTGTGG 60.126 61.111 0.00 0.00 41.38 4.17
328 329 0.318869 TTTCAGCAATGCCGCTTGTG 60.319 50.000 0.00 0.00 41.38 3.33
329 330 0.388659 TTTTCAGCAATGCCGCTTGT 59.611 45.000 0.00 0.00 41.38 3.16
330 331 1.392168 CATTTTCAGCAATGCCGCTTG 59.608 47.619 0.00 0.00 41.38 4.01
331 332 1.273048 TCATTTTCAGCAATGCCGCTT 59.727 42.857 0.00 0.00 41.38 4.68
332 333 0.889994 TCATTTTCAGCAATGCCGCT 59.110 45.000 0.00 0.00 45.21 5.52
333 334 1.712401 TTCATTTTCAGCAATGCCGC 58.288 45.000 0.00 0.00 34.58 6.53
334 335 2.412770 GGTTTCATTTTCAGCAATGCCG 59.587 45.455 0.00 0.00 34.58 5.69
335 336 3.401182 TGGTTTCATTTTCAGCAATGCC 58.599 40.909 0.00 0.00 34.58 4.40
336 337 4.093850 GGATGGTTTCATTTTCAGCAATGC 59.906 41.667 0.00 0.00 34.58 3.56
337 338 4.632688 GGGATGGTTTCATTTTCAGCAATG 59.367 41.667 0.00 0.00 35.73 2.82
338 339 4.323715 GGGGATGGTTTCATTTTCAGCAAT 60.324 41.667 0.00 0.00 32.98 3.56
339 340 3.007831 GGGGATGGTTTCATTTTCAGCAA 59.992 43.478 0.00 0.00 32.98 3.91
340 341 2.566724 GGGGATGGTTTCATTTTCAGCA 59.433 45.455 0.00 0.00 32.98 4.41
341 342 2.566724 TGGGGATGGTTTCATTTTCAGC 59.433 45.455 0.00 0.00 32.98 4.26
342 343 3.367292 CGTGGGGATGGTTTCATTTTCAG 60.367 47.826 0.00 0.00 32.98 3.02
343 344 2.560542 CGTGGGGATGGTTTCATTTTCA 59.439 45.455 0.00 0.00 32.98 2.69
344 345 2.094234 CCGTGGGGATGGTTTCATTTTC 60.094 50.000 0.00 0.00 32.98 2.29
345 346 1.899142 CCGTGGGGATGGTTTCATTTT 59.101 47.619 0.00 0.00 32.98 1.82
346 347 1.555967 CCGTGGGGATGGTTTCATTT 58.444 50.000 0.00 0.00 32.98 2.32
347 348 3.281332 CCGTGGGGATGGTTTCATT 57.719 52.632 0.00 0.00 32.98 2.57
360 361 3.567579 AATCCACTGGCACCCGTGG 62.568 63.158 20.82 20.82 43.87 4.94
361 362 2.034066 AATCCACTGGCACCCGTG 59.966 61.111 4.39 4.39 0.00 4.94
362 363 2.185310 GAGAATCCACTGGCACCCGT 62.185 60.000 0.00 0.00 0.00 5.28
363 364 1.450312 GAGAATCCACTGGCACCCG 60.450 63.158 0.00 0.00 0.00 5.28
364 365 0.038166 TTGAGAATCCACTGGCACCC 59.962 55.000 0.00 0.00 0.00 4.61
365 366 1.747355 CATTGAGAATCCACTGGCACC 59.253 52.381 0.00 0.00 0.00 5.01
366 367 1.133790 GCATTGAGAATCCACTGGCAC 59.866 52.381 0.00 0.00 0.00 5.01
367 368 1.005097 AGCATTGAGAATCCACTGGCA 59.995 47.619 0.00 0.00 0.00 4.92
368 369 1.760192 AGCATTGAGAATCCACTGGC 58.240 50.000 0.00 0.00 0.00 4.85
369 370 3.624861 GTGTAGCATTGAGAATCCACTGG 59.375 47.826 0.00 0.00 0.00 4.00
370 371 4.511527 AGTGTAGCATTGAGAATCCACTG 58.488 43.478 0.00 0.00 31.22 3.66
371 372 4.833478 AGTGTAGCATTGAGAATCCACT 57.167 40.909 0.00 0.00 0.00 4.00
372 373 5.886960 AAAGTGTAGCATTGAGAATCCAC 57.113 39.130 0.00 0.00 0.00 4.02
373 374 6.711277 AGTAAAGTGTAGCATTGAGAATCCA 58.289 36.000 0.00 0.00 0.00 3.41
374 375 7.334421 TGAAGTAAAGTGTAGCATTGAGAATCC 59.666 37.037 0.00 0.00 0.00 3.01
375 376 8.256611 TGAAGTAAAGTGTAGCATTGAGAATC 57.743 34.615 0.00 0.00 0.00 2.52
376 377 8.621532 TTGAAGTAAAGTGTAGCATTGAGAAT 57.378 30.769 0.00 0.00 0.00 2.40
377 378 7.931407 TCTTGAAGTAAAGTGTAGCATTGAGAA 59.069 33.333 0.00 0.00 0.00 2.87
378 379 7.441836 TCTTGAAGTAAAGTGTAGCATTGAGA 58.558 34.615 0.00 0.00 0.00 3.27
379 380 7.658179 TCTTGAAGTAAAGTGTAGCATTGAG 57.342 36.000 0.00 0.00 0.00 3.02
380 381 7.931407 TCTTCTTGAAGTAAAGTGTAGCATTGA 59.069 33.333 9.80 0.00 0.00 2.57
381 382 8.087982 TCTTCTTGAAGTAAAGTGTAGCATTG 57.912 34.615 9.80 0.00 0.00 2.82
382 383 8.677148 TTCTTCTTGAAGTAAAGTGTAGCATT 57.323 30.769 9.80 0.00 0.00 3.56
383 384 8.677148 TTTCTTCTTGAAGTAAAGTGTAGCAT 57.323 30.769 9.80 0.00 35.89 3.79
384 385 8.395633 GTTTTCTTCTTGAAGTAAAGTGTAGCA 58.604 33.333 12.99 0.00 35.89 3.49
385 386 8.613482 AGTTTTCTTCTTGAAGTAAAGTGTAGC 58.387 33.333 16.49 6.35 35.89 3.58
395 396 9.847224 TGACCTTAATAGTTTTCTTCTTGAAGT 57.153 29.630 9.80 0.00 35.89 3.01
397 398 9.621629 TGTGACCTTAATAGTTTTCTTCTTGAA 57.378 29.630 0.00 0.00 0.00 2.69
398 399 9.793259 ATGTGACCTTAATAGTTTTCTTCTTGA 57.207 29.630 0.00 0.00 0.00 3.02
405 406 9.931210 CCGATAAATGTGACCTTAATAGTTTTC 57.069 33.333 0.00 0.00 0.00 2.29
406 407 8.403236 GCCGATAAATGTGACCTTAATAGTTTT 58.597 33.333 0.00 0.00 0.00 2.43
407 408 7.012989 GGCCGATAAATGTGACCTTAATAGTTT 59.987 37.037 0.00 0.00 0.00 2.66
408 409 6.485648 GGCCGATAAATGTGACCTTAATAGTT 59.514 38.462 0.00 0.00 0.00 2.24
409 410 5.995897 GGCCGATAAATGTGACCTTAATAGT 59.004 40.000 0.00 0.00 0.00 2.12
410 411 6.147821 CAGGCCGATAAATGTGACCTTAATAG 59.852 42.308 0.00 0.00 0.00 1.73
411 412 5.995282 CAGGCCGATAAATGTGACCTTAATA 59.005 40.000 0.00 0.00 0.00 0.98
412 413 4.821805 CAGGCCGATAAATGTGACCTTAAT 59.178 41.667 0.00 0.00 0.00 1.40
413 414 4.080807 TCAGGCCGATAAATGTGACCTTAA 60.081 41.667 0.00 0.00 0.00 1.85
414 415 3.452990 TCAGGCCGATAAATGTGACCTTA 59.547 43.478 0.00 0.00 0.00 2.69
415 416 2.238646 TCAGGCCGATAAATGTGACCTT 59.761 45.455 0.00 0.00 0.00 3.50
416 417 1.837439 TCAGGCCGATAAATGTGACCT 59.163 47.619 0.00 0.00 0.00 3.85
417 418 2.325583 TCAGGCCGATAAATGTGACC 57.674 50.000 0.00 0.00 0.00 4.02
418 419 4.695217 TTTTCAGGCCGATAAATGTGAC 57.305 40.909 0.00 0.00 0.00 3.67
477 478 9.248291 GTGCATAATTTTCTTTCAACTCTGAAA 57.752 29.630 0.00 0.77 46.88 2.69
478 479 8.412456 TGTGCATAATTTTCTTTCAACTCTGAA 58.588 29.630 0.00 0.00 39.87 3.02
479 480 7.862372 GTGTGCATAATTTTCTTTCAACTCTGA 59.138 33.333 0.00 0.00 0.00 3.27
480 481 7.864379 AGTGTGCATAATTTTCTTTCAACTCTG 59.136 33.333 0.00 0.00 0.00 3.35
481 482 7.945134 AGTGTGCATAATTTTCTTTCAACTCT 58.055 30.769 0.00 0.00 0.00 3.24
482 483 7.327032 GGAGTGTGCATAATTTTCTTTCAACTC 59.673 37.037 0.00 0.00 0.00 3.01
483 484 7.014615 AGGAGTGTGCATAATTTTCTTTCAACT 59.985 33.333 0.00 0.00 0.00 3.16
484 485 7.147976 AGGAGTGTGCATAATTTTCTTTCAAC 58.852 34.615 0.00 0.00 0.00 3.18
485 486 7.288810 AGGAGTGTGCATAATTTTCTTTCAA 57.711 32.000 0.00 0.00 0.00 2.69
486 487 6.899393 AGGAGTGTGCATAATTTTCTTTCA 57.101 33.333 0.00 0.00 0.00 2.69
487 488 9.691362 TTTTAGGAGTGTGCATAATTTTCTTTC 57.309 29.630 0.00 0.00 0.00 2.62
489 490 9.643693 CATTTTAGGAGTGTGCATAATTTTCTT 57.356 29.630 0.00 0.00 0.00 2.52
490 491 8.806146 ACATTTTAGGAGTGTGCATAATTTTCT 58.194 29.630 0.00 0.00 0.00 2.52
491 492 8.863049 CACATTTTAGGAGTGTGCATAATTTTC 58.137 33.333 0.00 0.00 37.09 2.29
492 493 8.761575 CACATTTTAGGAGTGTGCATAATTTT 57.238 30.769 0.00 0.00 37.09 1.82
501 502 4.836125 AGTTGCACATTTTAGGAGTGTG 57.164 40.909 0.00 0.00 44.51 3.82
502 503 5.825679 TGTTAGTTGCACATTTTAGGAGTGT 59.174 36.000 0.00 0.00 35.75 3.55
503 504 6.142817 GTGTTAGTTGCACATTTTAGGAGTG 58.857 40.000 0.00 0.00 36.88 3.51
504 505 5.049680 CGTGTTAGTTGCACATTTTAGGAGT 60.050 40.000 0.00 0.00 36.71 3.85
505 506 5.178623 TCGTGTTAGTTGCACATTTTAGGAG 59.821 40.000 0.00 0.00 36.71 3.69
506 507 5.049954 GTCGTGTTAGTTGCACATTTTAGGA 60.050 40.000 0.00 0.00 36.71 2.94
507 508 5.144359 GTCGTGTTAGTTGCACATTTTAGG 58.856 41.667 0.00 0.00 36.71 2.69
508 509 5.144359 GGTCGTGTTAGTTGCACATTTTAG 58.856 41.667 0.00 0.00 36.71 1.85
509 510 4.318903 CGGTCGTGTTAGTTGCACATTTTA 60.319 41.667 0.00 0.00 36.71 1.52
510 511 3.547214 CGGTCGTGTTAGTTGCACATTTT 60.547 43.478 0.00 0.00 36.71 1.82
511 512 2.032377 CGGTCGTGTTAGTTGCACATTT 60.032 45.455 0.00 0.00 36.71 2.32
512 513 1.529438 CGGTCGTGTTAGTTGCACATT 59.471 47.619 0.00 0.00 36.71 2.71
513 514 1.144969 CGGTCGTGTTAGTTGCACAT 58.855 50.000 0.00 0.00 36.71 3.21
514 515 0.876777 CCGGTCGTGTTAGTTGCACA 60.877 55.000 0.00 0.00 36.71 4.57
515 516 0.877213 ACCGGTCGTGTTAGTTGCAC 60.877 55.000 0.00 0.00 0.00 4.57
516 517 0.179078 AACCGGTCGTGTTAGTTGCA 60.179 50.000 8.04 0.00 0.00 4.08
517 518 0.233848 CAACCGGTCGTGTTAGTTGC 59.766 55.000 8.04 0.00 32.30 4.17
518 519 0.863144 CCAACCGGTCGTGTTAGTTG 59.137 55.000 8.04 0.00 38.00 3.16
519 520 0.752054 TCCAACCGGTCGTGTTAGTT 59.248 50.000 8.04 0.00 0.00 2.24
520 521 0.971386 ATCCAACCGGTCGTGTTAGT 59.029 50.000 8.04 0.00 0.00 2.24
521 522 2.945447 TATCCAACCGGTCGTGTTAG 57.055 50.000 8.04 0.00 0.00 2.34
522 523 3.006752 AGTTTATCCAACCGGTCGTGTTA 59.993 43.478 8.04 0.00 35.77 2.41
523 524 2.145536 GTTTATCCAACCGGTCGTGTT 58.854 47.619 8.04 0.00 0.00 3.32
524 525 1.345415 AGTTTATCCAACCGGTCGTGT 59.655 47.619 8.04 0.00 35.77 4.49
525 526 1.997606 GAGTTTATCCAACCGGTCGTG 59.002 52.381 8.04 2.64 35.77 4.35
526 527 1.619827 TGAGTTTATCCAACCGGTCGT 59.380 47.619 8.04 0.00 35.77 4.34
527 528 2.373540 TGAGTTTATCCAACCGGTCG 57.626 50.000 8.04 0.00 35.77 4.79
528 529 2.414138 CGTTGAGTTTATCCAACCGGTC 59.586 50.000 8.04 0.00 39.42 4.79
529 530 2.419667 CGTTGAGTTTATCCAACCGGT 58.580 47.619 0.00 0.00 39.42 5.28
530 531 1.129811 GCGTTGAGTTTATCCAACCGG 59.870 52.381 0.00 0.00 39.42 5.28
531 532 2.073816 AGCGTTGAGTTTATCCAACCG 58.926 47.619 0.00 0.00 39.42 4.44
532 533 3.500680 TCAAGCGTTGAGTTTATCCAACC 59.499 43.478 0.00 0.00 39.42 3.77
533 534 4.742438 TCAAGCGTTGAGTTTATCCAAC 57.258 40.909 0.00 0.00 39.26 3.77
534 535 7.335673 TGATTATCAAGCGTTGAGTTTATCCAA 59.664 33.333 0.00 0.00 43.98 3.53
535 536 6.821160 TGATTATCAAGCGTTGAGTTTATCCA 59.179 34.615 0.00 0.00 43.98 3.41
536 537 7.246674 TGATTATCAAGCGTTGAGTTTATCC 57.753 36.000 0.00 0.00 43.98 2.59
537 538 6.848296 GCTGATTATCAAGCGTTGAGTTTATC 59.152 38.462 0.00 6.79 43.98 1.75
538 539 6.540189 AGCTGATTATCAAGCGTTGAGTTTAT 59.460 34.615 0.00 0.00 43.98 1.40
539 540 5.874810 AGCTGATTATCAAGCGTTGAGTTTA 59.125 36.000 0.00 0.00 43.98 2.01
540 541 4.697352 AGCTGATTATCAAGCGTTGAGTTT 59.303 37.500 0.00 0.00 43.98 2.66
541 542 4.256920 AGCTGATTATCAAGCGTTGAGTT 58.743 39.130 0.00 0.00 43.98 3.01
542 543 3.866651 AGCTGATTATCAAGCGTTGAGT 58.133 40.909 0.00 0.00 43.98 3.41
543 544 4.871993 AAGCTGATTATCAAGCGTTGAG 57.128 40.909 0.00 0.00 43.98 3.02
544 545 4.142622 CCAAAGCTGATTATCAAGCGTTGA 60.143 41.667 27.40 0.00 45.01 3.18
545 546 4.100529 CCAAAGCTGATTATCAAGCGTTG 58.899 43.478 23.27 23.27 38.40 4.10
546 547 4.009675 TCCAAAGCTGATTATCAAGCGTT 58.990 39.130 10.11 10.11 0.00 4.84
547 548 3.375299 GTCCAAAGCTGATTATCAAGCGT 59.625 43.478 0.00 0.00 0.00 5.07
548 549 3.624861 AGTCCAAAGCTGATTATCAAGCG 59.375 43.478 0.00 0.00 0.00 4.68
549 550 5.573337 AAGTCCAAAGCTGATTATCAAGC 57.427 39.130 0.00 2.79 0.00 4.01
550 551 8.498054 TTCTAAGTCCAAAGCTGATTATCAAG 57.502 34.615 0.00 0.00 0.00 3.02
551 552 8.862325 TTTCTAAGTCCAAAGCTGATTATCAA 57.138 30.769 0.00 0.00 0.00 2.57
571 572 9.675464 ACGTGGACTTGGAAATTATTATTTCTA 57.325 29.630 14.85 7.90 45.81 2.10
572 573 8.575649 ACGTGGACTTGGAAATTATTATTTCT 57.424 30.769 14.85 0.00 45.81 2.52
573 574 9.931210 CTACGTGGACTTGGAAATTATTATTTC 57.069 33.333 8.37 8.37 45.81 2.17
574 575 9.675464 TCTACGTGGACTTGGAAATTATTATTT 57.325 29.630 0.00 0.00 36.68 1.40
586 587 1.798813 GTTGCTTCTACGTGGACTTGG 59.201 52.381 0.00 0.00 0.00 3.61
589 590 1.045407 TGGTTGCTTCTACGTGGACT 58.955 50.000 0.00 0.00 0.00 3.85
596 597 2.789409 ATGGGAGTGGTTGCTTCTAC 57.211 50.000 0.00 0.00 0.00 2.59
601 602 1.922447 TGGATTATGGGAGTGGTTGCT 59.078 47.619 0.00 0.00 0.00 3.91
602 603 2.427095 GTTGGATTATGGGAGTGGTTGC 59.573 50.000 0.00 0.00 0.00 4.17
604 605 2.024369 GGGTTGGATTATGGGAGTGGTT 60.024 50.000 0.00 0.00 0.00 3.67
605 606 1.569072 GGGTTGGATTATGGGAGTGGT 59.431 52.381 0.00 0.00 0.00 4.16
606 607 1.568597 TGGGTTGGATTATGGGAGTGG 59.431 52.381 0.00 0.00 0.00 4.00
607 608 3.023832 GTTGGGTTGGATTATGGGAGTG 58.976 50.000 0.00 0.00 0.00 3.51
609 610 3.380471 TGTTGGGTTGGATTATGGGAG 57.620 47.619 0.00 0.00 0.00 4.30
633 635 3.305744 GGCCAAACAAAAGCTTCCGAATA 60.306 43.478 0.00 0.00 0.00 1.75
648 650 6.591448 CCTCTAAATCATTTTTCTGGCCAAAC 59.409 38.462 7.01 0.00 0.00 2.93
655 663 7.565323 AGCTAGCCTCTAAATCATTTTTCTG 57.435 36.000 12.13 0.00 0.00 3.02
656 664 7.443879 GCTAGCTAGCCTCTAAATCATTTTTCT 59.556 37.037 31.67 0.00 43.39 2.52
674 682 3.601435 TCGCCACTATAGAGCTAGCTAG 58.399 50.000 19.38 16.84 0.00 3.42
675 683 3.601435 CTCGCCACTATAGAGCTAGCTA 58.399 50.000 19.38 2.78 0.00 3.32
693 701 2.027192 TGGAGAAATTCCTTCCACCTCG 60.027 50.000 0.41 0.00 46.92 4.63
795 808 3.402110 CGGAATATATGCTGCCTGTTGA 58.598 45.455 0.00 0.00 0.00 3.18
970 989 3.434319 GCTTAAGCTGCTGCCGCA 61.434 61.111 20.38 1.88 45.60 5.69
1507 1533 3.000727 GCACACTGATAGTACCACAACC 58.999 50.000 0.00 0.00 0.00 3.77
1509 1535 4.551702 ATGCACACTGATAGTACCACAA 57.448 40.909 0.00 0.00 0.00 3.33
1578 1607 3.056179 ACAAATATCCCAAGCAAAACCGG 60.056 43.478 0.00 0.00 0.00 5.28
1644 1673 8.846943 AATGAGAATACAAACATACAGACACA 57.153 30.769 0.00 0.00 0.00 3.72
1703 1732 0.101399 AGTAACGATGCTGAGAGCGG 59.899 55.000 0.00 0.00 46.26 5.52
1711 1740 4.103365 CTCTCAACAGAGTAACGATGCT 57.897 45.455 0.00 0.00 41.40 3.79
1720 1749 6.664481 CGTACACGATGCTCTCAACAGAGT 62.664 50.000 0.00 0.00 44.26 3.24
1729 1758 0.733729 GTCTCCGTACACGATGCTCT 59.266 55.000 2.76 0.00 43.02 4.09
1755 1784 1.195448 GAACGCAACACATGACCTCTG 59.805 52.381 0.00 0.00 0.00 3.35
1756 1785 1.512926 GAACGCAACACATGACCTCT 58.487 50.000 0.00 0.00 0.00 3.69
1906 1936 0.335705 ATGCACCATCCACCCATGAA 59.664 50.000 0.00 0.00 0.00 2.57
1907 1937 0.106569 GATGCACCATCCACCCATGA 60.107 55.000 0.00 0.00 35.07 3.07
1924 1954 1.623811 ACTTGGACTACACTTGCCGAT 59.376 47.619 0.00 0.00 0.00 4.18
1933 1963 1.502690 ACACACCCACTTGGACTACA 58.497 50.000 0.00 0.00 37.39 2.74
1996 2026 2.587307 AGGGGCCAATCCTAAACTGAAT 59.413 45.455 4.39 0.00 31.86 2.57
2010 2040 0.485099 AACCATAACACAAGGGGCCA 59.515 50.000 4.39 0.00 0.00 5.36
2024 2054 2.290071 GCTACCACACCACTACAACCAT 60.290 50.000 0.00 0.00 0.00 3.55
2119 3242 4.705507 AGAAGACTATCCTTGTTGCGAGTA 59.294 41.667 0.00 0.00 0.00 2.59
2295 3450 4.740822 ATGGGCCGGCTCACAACC 62.741 66.667 35.86 21.32 0.00 3.77
2319 3474 3.007614 AGTTTGTTGACCGCACCTATACT 59.992 43.478 0.00 0.00 0.00 2.12
2364 3519 1.074727 TCTTTCGAAGCCATGGGGAAA 59.925 47.619 15.13 0.00 35.59 3.13
2365 3520 0.695924 TCTTTCGAAGCCATGGGGAA 59.304 50.000 15.13 0.00 35.59 3.97
2372 3527 1.810151 CCGGAAAATCTTTCGAAGCCA 59.190 47.619 0.00 0.00 35.36 4.75
2373 3528 1.810755 ACCGGAAAATCTTTCGAAGCC 59.189 47.619 9.46 0.00 35.36 4.35
2375 3530 5.758924 AGAAAACCGGAAAATCTTTCGAAG 58.241 37.500 9.46 0.00 35.36 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.