>input_sequence_80247
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------------------------------------------------------------ATGTCGTCGTGGGCGCAGCA
CTCGCGGCGGGGCTGGAGGCACGGCTGGGCGGCGCGGGCGCTGTCATCGGCGACGCTGCCGCCGTGGCGCCTGCTGGCCT
TCTTCGCCATCGTGGTCTCCTTCCTGGCCACCTCCTCCTACGTCGACTACCGGGCCGTCGAGCGCGCCGCCGAGATCGGC
GCGCGGGTCTTCGCCGCGCCGCTCGCCGCCATGGCCGCCTTCCTCCTCTTCGCCGCGCTCGGGTACTGGCGCCGCCGCAC
CCGCTGGGCGCTCCGACGCCACGCCGTGAACGCCCAGCCGGCCGCGGCCTCGTCGCAGTCGTCGGGGGCGTCACCGTGGG
GCGTGGCGGCGATGGTGGCGGTGCTGCTGGTGATGGTGACTTTCCAGCCCTGCGTCCACTCCATGTGGTTCAGGCCGCTC
TGGAGTTCAGACTACAGCTAG-----------------------------------------------------------
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>chr5B_1_TraesCS5B01G561600
AGCATTTGGTCTGTCCGGAATGACAAAACCTTCAGAGCAGCAGCATCACATTTAGGCATCTGGAAGTTCTATCTGGAGGA
ACGATTATGGGAAGCACAGCTCAGGGCAAAAGAAGGCAAAGCAGAACAGCTCAAGTCTGGGTCGGAACAATTTCTGTAAT
ATGATTATCGTGATGTTCCCTAGAGCTGGCATTGGTTGATTTTTACCTTTATCTTCATTTTACTTTTTACCTGTAATTTG
TACCATTTATTATTCATTAAGGAAAATACCGTAGAACGATTGTTCTACGGTCAAGGATCAAAAAAAGAAAAGAGAGCACT
GCCCTGTCCACAAGCGGCATTGCTGAAAATGAAACCATCCCCACGGGTGCCAGTGGATTCTCAATGCTACACTTTACTTC
AAGAAGAAAACTATTAAGGTCACATTTATCGGCCTGAAAAAACAGTTATATCTAAATTGATCAACTTATACATATATTTT
CAGAGTTGAAAGAAAATTATGCACACTCCTAAAATGTGCAACTAACACGACCGGTTGGATAAACTCAACGCTTGATAATC
AGCTTTGGACTTAGAAATAATAATTTCCAAGTCCACGTAGAAGCAACCAC-TCCCATAATCCAACCCAACAAATTATTCG
GAAGCTTTTGTTT------GGCCAGAAAAATGATTTAGAGGCTAGCTAGCTCTATAGTGGCGAGGTGGAAGGAATTTCTC
CATCTTTAATCAGT-----GCGCACCACCTATGACCAATTGATTCTCTCATCTAATCCTCCTTTGATTTATAGCTAAGCT
AGCTCTTTCAACAGGCAGCATATATTCCGGCGCGCCCACCTCTGAGCTCTGACCCATCACGGCTCCTCTCCCGCCTTTCC
TTTCTTCCACCCA------CAAGCATTTGGCATCTGCTTCCTTCCTTCCACTCCAATAATATATACCACCACTCTGCACG
CGCCTACAGCTCAGCTGGATAGAGCCGGTGC--GGCAGCAGCTTAAGCTAAGCTTGCGCGATGTCGTCGTGGGCGCAGCA
CTCGCGGCGGGGCTGGAGGCACGGCTGGGCGGCGCGGGCGCTGTCATCGGCGACGCTGCCGCCGTGGCGCCTGCTGGCCT
TCTTCGCCATCGTGGTCTCCTTCCTGGCCACCTCCTCCTACGTCGACTACCGGGCCGTCGAGCGCGCCGCCGAGATCGGC
GCGCGGGTCTTCGCCGCGCCGCTCGCCGCCATGGCCGCCTTCCTCCTCTTCGCCGCGCTCGGGTACTGGCGCCGCCGCAC
CCGCTGGGCGCTCCGACGCCACGCCGTGAACGCCCAGCCGGCCGCGGCCTCGTCGCAGTCGTCGGGGGCGTCACCGTGGG
GCGTGGCGGCGATGGTGGCGGTGCTGCTGGTGATGGTGACTTTCCAGCCCTGCGTCCACTCCATGTGGTTCAGGCCGCTC
TGGAGTTCAGACTACAGCTAGCTCCTAGCTCATCGGATGCTCTCCGTGTGTAGTACCTCTTCT-----TTTTCTTTTTTT
GCAAAATCTCCGGGTTGTGGTACTATCAGTGTGCATAAA---AGTACTTTCTAGCTAGAGATCAATTACTACGTGCTTGA
GATATACCGGTTTTGCTTGGGATATTTGTGTTTGATCGATGTGTAACCTCACGGTATTACTCGCATTTCATATGTGTCTG
TATGTTTGTATTCTCATTTTGTTAAAATTTTGCGACTAGGTTCGGTTCCGGCCGCTCTCAGCATCGTTACTCTGTTGAGA
GCATCGTGTACGGAGACACGATCCAGAGGTCATGTGTTGCGTTCCTTTCGTGCTTGTTGCTGTCAAGTC-GATCTTCAAG
GGCGTTATGTACGGCATAATTGGCGTGTCCAAGACGATGCCTTTCTCGTGACCGTCCAAGTCCCGCCACCGACTCGCCAA
TCTCTTTTAGGCATTTTCATGGGTGGATGGTGCATCGGCAAGTGTAGTCCAAGTGGGTGTGTTATCTTCGAAGGCGGCAA
GTGTTGGTCGAGACACGGCTTTGTAATTCAGTTTAGGATTGGCCCCTTGTGTTATGGTTGTAGT-GGTGTGGTAGCTTGT
CATCGGACTGCCCTGGTGTGTGTTGGCTTGTCTTCGAACTT---------------------------------------
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-------------GCCTCGGTGTGGAGTGGAGTGTCCACTGTACT----CGCAAC-AAGGATAGTCTTCTTATAATTTAT
TTATTTCTGGCATTTATTAAAATATGATACGTTTGGGTGTACTCTTC---------------------------AAAAAA
TCCACCTAAACTCGCACTAATTATTTTTTAAGAATAACTAGCACTCACAAATGATATGTAACCCCCGAGGGTAAATAGCT
CACTAGCACGGTTGTGAGCCGGCCCATCGGGCTAGTATAGGTGCGGTCAACAAACTGTTGGGCTCCTATTTTTTGAACTT
TCCCCATGGCTTCGAAAGATTTTCCGGTTTTCTTTCTATTTTTTTTCTTGTTGTTTATTTATTTTATTTTTCCAT
>chr5D_576
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---------------AATAATAATTTTCATGTCCACCTAGACACCTAGAATTCCCATAATCCAACCCAACAAATGATTCG
GAAGCTTTTTTTTGGGGGGGGCGGGAAAAATGATTCAGA----AGCTAGCTCTATAGTGGTGAGGTGGAAGGAATTTCTC
CATCTTTAATAAGTGCGCACCACCTCTGATA-GACCAATTGATTCTCTCATGTAACCCTCCTTTGATGTATAGCTAAGCT
AGCTCTTCCAACAGGCAGCATATATTCCGGCGCGCCCACCTCTGAGCTCTGA-CCATCACCGCTCCTCTCCCGCCTCTCC
TTTCTTCCACCCACAATTGCAAGCATTTGGCATCTGCTTCCTTCCTTCCACTCCAATAATATATACCACCACCCTGCAGG
CGCCTACAGCTGAGCTCGACAAAGCCGGAGC--GGCAGCAGCC-AAGCTAAGCTAGCGCGATGTCGTCGTGGGCGCAGCA
CTCGCGGCGGGGCTGGAGGCACGGCTGGGCGGCGCGGGCGCTGTCGTCGGCGACGCTGCCGCCGTGGCGCCTGCTGGCCT
TCTTCGCCATCGTGGTCTCCTTCCTGGCAACCTCCTCCTACGTCGACTACCGGGCTGTCGAGCGCCGGGCCGAGATCGGC
GCGCGGGTCTTCGCCGCGCCGCTCGCCGCCATGGCCGCCTTCCTCCTCTTCGCCGCGCTCGGGTACTGGCGTCGCCGCAC
CCGCTGGGCGCTCCGCCGCCACGCCGTGAACGCCCAGCCTGCCTTGGCCTCGTCGCAGTCATCGGGGGCCTCGCCGTGGG
GCGTGGCGGCGATGGTGGCGGTGCTGCTGGTCATGGTGACTTTCCAGCCCGCCGTCCACTCCATGTGGTTCAGGCCGCTC
TGGAGTTCAGACTACAGCTAGCTCCTAGCTCATCGGATGCTCTCCGTGTGTAGTACCTCTTCTTTTTCTTTTCTTTTTTT
GCAAAATCTCCGTA-TGTGGTACTATCAGTGTGCATAAA---AGTACTTTCTAGCTAGAGATCAATTACTACGTGCTTGA
GATATATCGGTTTTGCTTGGGATATTTGTGTTTGATCGATGTGTAACCTCACGGTATTACTCGCATTTCATACGCGTCTG
TATGTTTGTATTCTCATTTTGTTAAAATTTTGCGACTAGGTTCGGTTCCGGGCGCTCTCGGCGTCGTTCCTCTGTTGGGA
GCATCGTGTACTGAGACACGATCTGAAGGTCATGTGTTGCGTTCGTTTCGTGCTTGTTGCTGTCAGGTC-AATCTTCAAG
GGCGCTATGTACGGCATAGTTGGCGTGTCCAAGACGATGCCTTTCTCGTGACCGTCCAAGTCCCGCCACCGACTCGCCAA
TCTCTTTTAGGCATT--CATGGGTGGATGGTGCGTCGGCAAGGGTAGTCCAAGTGGGTGTGTTATCTTCGAAGGCGGCAA
GTGTTGGTCGAGACACGGCTTTATATTTCAGTTTAGGATAGGCCCCTTGTGTTGTGGTTGTAGT-GGTGTGGTAGCTTGT
CATCGGACTGCCCTGGTGTGTGTTGGCTTGTCTTCGAACTTGCCTCGGTGT-----------------------------
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GTCCCCGCAAAAAAAAAA--------------------------------------------------------------
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-------GAACTTGCCTCGGTGTGGAGTGGAGTGTCCACTGCACT----CGCAACAAAGGATAGTCTTCTTATAATTTAT
TTAT----GGCATTTATTAAAATATGATACATTTGAGTTTACTCTTAAAAAATCCACCTGAACTTTTTTTAGGGAAAAAA
TCCACCTAAGCTAGCACTAATTCTTTTTTAAGAATAACTAGCACTCACAAATGATACGTGACCCCCGAGGGTAAATAGCT
CACTAGCACAGTTGTGAGCCGGCCCATCGGGCTTGTATAGGTACGGTCAACAAACTGTTGCGCTCCCGTTTTTTGAACCC
TCCCCACAGTTTCGAAAGATTTTCCGGTTTTCTTTC------------TGTTTTTTATTTATTTTATTCATTTT-
>chr4A_613
CCAAATCC------------------------------------------------------------------------
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---------------------------------------------------------------ACCCAACAAATGATTCA
GAAGCTTTTTTTTTGGCGAAT----AAAAATGATTCAGA----AGCTAGCTCTATAGTTGTGAGGTGGAAGGAATTTTTC
CATCTTTAATCAGTGCGCAGCGCACCACCTATGATCAATTGATTCTCTCATGTAATCCTCCTTTGATGTATAGCTAAGCT
AGCTCTTCCAGCAGGCAGCATATATTCCGGAGCGCCCACCTCTGAGCTCTGACCCATCACCGCTCCTCTCCCGCCTTTCC
TTTCTTCCACCCA------CAAGCATTTGGCATCTGCTTCCTTCCTTCCACTCCAATAATATATACCACCACCCTGCACG
CGCCTACACCTCGGTAACGCAGGAGCGGCAGCAGGCAGCAGCC-AATCTAAGCTAGCGCGATGTCGTCGTGGGCGCAGCA
CTCGCGGCGGGGCTGGAGGCACGGCTGGGCGGCG------------------ACGCTGCCGCCGTGGCGCCTGCTGGCCT
TCTTCGCCATCGTGGTCTCCTTCCTGGCCACCTCCTCCTACGTCGACTACCGGGCCGTGGAGCGCCGTGCCGAGATCGGG
GCACGCGTCTTCGCCGCGCCGCTCGCCGCCATGGCCGCCTTCCTCCTCTTCGCCGCGCTCGGGTACTGGCGCCGCCGTAC
CCGCTGGGCGCTCCGACGCCACGCCATTAACGCCCAGCCGGCCGTGGCACCGTCGCAGTCGTCGGGGGCGTCTCCGTGGG
GCGTGGCGGCGATGGTGGCGGTGCTGCTGGTGATGGTGACGTTCCAGCCCTCCGTGCACTCCATGTGGTTCAGGCCGCTC
TGGAGTTCAGACTACAGCTAGCCCCTAGCTCATCAGATGCTCCCCGTGTGTACTACCTT--------------TTTTTTT
GCGAAATCTCCGTG-TGTAGTACTGTCAGTGTGCATAAAAGTAGTACTTTCTAGGTAGAGATCAACTACTACGTGCTTGA
GATATATCGATTTTGCTTGGCATATTTGTGTTTTATCGATGTGTAACCTCACGGTATTACTCGCATTTTGTACGCGTCTG
TATGTTTGTATTCTCATTTTGTTAAAATTTTGCGCCTAGGTTCGGTTTCGCATCGGCGATGGCAA--------------A
GCATCGTGTTCGGAGACACAATTTGGAGGTCATATGTTGCGTTCCTTCCGTGCTTGTTGCTGTCAGGTG-GATTTTCAAG
GGCGCTATGTACACCACCACTGCTGCGTCCAAGACGCTGCCTTTCTCGTGACCGTCCAAGCCCTGCCACCTACTCGCAAA
TCTCTGGTAGGCATT--CATGGATGGATGATGCGTCGGCAAAGGTAGTCCAAATTGGTTTGTTGTCTTCGGAGACGGCAA
GTGTTGGTCGAGACGCGGCTTTGTATTTCAGTTTAGGATAGACCCCTTATGTTGTGGTTGTAGTGGGTGTGGTAGCTTGT
AATTGGACTGCCCTGGTGTGTGTTGGCTTA--------------------------------------------------
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--TCTTCAAACTTGCCTCGTTGTCTAGTAAAATGTGCACTGCACTTGTTCGCAAC-AAGGGTAG---TCTTGTAACTTAT
TTCT----ACATTCTACAAAAATATGGTTCTTCTTGGCGTAC-----------------------TTTTAAAGAAAGAAT
TTCACCTAAACTAGCACTAAGTCTGTTTTAAGAATAACTAACACTCACAAATGATATGTAAC------------------
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>chr1B_1705
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----------------------------------------------------CGCTCTTGGCGCCGTTCCTCTGTTGGGA
GCATTGTGTATGAAGACACAAATTGGAGGTCATGTGTTGCTTTTCTTCGGTGCTTGTTGCTGTCCAGATTGATCTTCGAA
TGCACTATGTACGCCATGACTGGTGCGTCCAAGACAAGGCCTTTCTCATGACCGTCCAAATCCCGTCACCTACTCGCCAA
CCTCTTTTAGGAATT--CATGGGTGGATGGTGCGTCGGCGAGGGTAGTCCAAGTTGGTGTGTTGTCTTCGGAGGCAGTAG
GTGTCGGTCGAGACGCGGCTTTGTCTTTCAGTTTTGGATAGGCCCCTTGTGTTGTCGTTGTAATGGATGTGACGGCTTGT
CATCGGACTGCCCTGGTGTGTGTTGGCTTGCAGGGCCGGTCCACATATATACGGGGCCCGGGGCAGGAAGACAACAAGGG
GCCCTTGTTTTTTTTCTTGACACACATGAACTGAAAATATTTTGTATGTCAAAACCAAAGGAAATATTCAGTAGATGGAA
TAGATAGATCCATTATCTTTGAATTCTAAAACTAACTATACAATGTATTTATCAACCAAGAGAAGTTCAAACATTTACTA
TATATTGCTAGTTGTAGTGATTCCTGAAAGAACTACTCGTCCGGTAAAAAAATGTCAACCAATTTTTTTGGGAATTCTAC
TTGTTCATCTATATATGTTTTTCCTCAGATTTTCATCACTACTACTAGAAAAATGCTTTTGACAAGACATGCCACCATAT
AAGGCGCGTAAAATATGTTCAATACAGATCAGAAAAGCACCTGGATATCATATGGCATAATGTGAATTTGTACGAATGCC
GCAATAGTCAGCGCAAATGAGAAGCCAACACCATGAATTGAATTAACATCTCCCCTTCTCCTAATCTCCTTAATGCTTTC
TCAGAACCAATGAAGAGTAGAAGATTATAAGAAGACATATGCAAGTCAGCAGATCCGAAGGAGTAAGAGCCAGAGATGAA
GAGCAAAGCTACTTGAATTAGAATCATTAAACTAAGGAAGAGAATTACATGGAGGATGCAGATCTCTGTGATTGGAAGGA
TCGATGATCATCCATTAATCGCTTGCCGCGCCCTTGGAATATGTAAGACACCGAAACGGCGGCGTTGTTCATGGATTGTG
AATTTGGGAGGAGAGGAGTCCACGAATACGGAGGAGAACGAGGGACTCGTGGATCCAGTGAAAACCGATTTGACTTCTTC
GTTCCCGCAAAAAAAAAGATTTGACTTCTTCGTGAGTATTGCTCGTACGTCCACCAGTTTAATGGGCTTTACACTTGCAC
GGTTGCACCTTGGGCCCTTTTATATTTTTTTTCTCTAGATTTCTTCCGCCTAAGATAAAAAAAACACACTGCATTGTACT
ACCTGGTTCGGGGCCCCTGCCTCTTGGGGGCCCAGGGCGGGGGCCCCGCTGCCCCGGCCTATGGACCGACCTTGTTGGCT
TGTCTTCGAACTTGCCTCGGTGTGGAGTGAAGTGTGCACTGCACT-----------------------------------
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>SNPs
SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS-----------S--S------S----SS-SSSS-S------------------------S-----
---------S------------SS-----------S---SSSS-----------------S-------------------
---------------------------------------------------S---------------S------------
-------S----------------------------------------------------S-------------------
------------------------------------------------------------------------S-------
----------------S--S--------S-------------SS----------S-------------------------
---------------------------------------------S----------------------------------
-----------------------------------------------------------------SSS------------
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--------------------------------------------S---------------------------S-------
---------------------------------------------------S----------------------------
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------------S-S-----------------------------------------------------------------
------S-----------------------------------------------------------------S-S-----
---------------------------------------------------S-------S--S-----S--------S--
-----------------------SS-------------------------------------------------------
----S---------------------------------------------------------------------------
---------------SS----------------S--------S-------------------------------------
-------------------------S-------------S-------------S--------------------------
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-----------------------------------------S--------------------------------------
----SSSS----------------------S---------------S---------------------------------
------------S---------S---------------------------------------------------------
---------S-----------------------S--------S-----------------S-----SS----------SS
------SS-S--------------------------SSSSSSSSSSSS----S---------------SS-SSSS
>forward_144
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--------------------------------------------AACAGCTCAAGTCTGGGTCG----------------
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>reverse_1732
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---------------------------------------------------CCGCTCTCAGCATCGTTACT---------
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