Multiple sequence alignment - TraesCS5B01G522800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G522800 chr5B 100.000 2600 0 0 1 2600 684189037 684191636 0.000000e+00 4802.0
1 TraesCS5B01G522800 chr5B 95.349 215 4 1 377 585 708379789 708379575 1.150000e-88 337.0
2 TraesCS5B01G522800 chr4A 88.546 908 61 15 810 1681 626637330 626636430 0.000000e+00 1061.0
3 TraesCS5B01G522800 chr4A 94.762 210 5 1 377 580 677809098 677809307 3.230000e-84 322.0
4 TraesCS5B01G522800 chr4A 98.077 52 1 0 2329 2380 673925646 673925595 9.910000e-15 91.6
5 TraesCS5B01G522800 chr1B 98.646 591 2 1 1 585 683523255 683523845 0.000000e+00 1042.0
6 TraesCS5B01G522800 chr1B 92.500 560 37 4 1773 2331 662631578 662631023 0.000000e+00 797.0
7 TraesCS5B01G522800 chr1B 98.077 52 1 0 2329 2380 622978348 622978399 9.910000e-15 91.6
8 TraesCS5B01G522800 chr1B 98.077 52 1 0 2329 2380 662630965 662631016 9.910000e-15 91.6
9 TraesCS5B01G522800 chr2B 98.477 591 3 1 1 585 8433701 8434291 0.000000e+00 1037.0
10 TraesCS5B01G522800 chr2B 93.214 560 33 2 1776 2331 572689417 572689975 0.000000e+00 819.0
11 TraesCS5B01G522800 chr2B 100.000 52 0 0 2329 2380 572690033 572689982 2.130000e-16 97.1
12 TraesCS5B01G522800 chr5D 92.152 739 48 6 948 1678 542529925 542530661 0.000000e+00 1035.0
13 TraesCS5B01G522800 chr5D 92.241 116 8 1 830 945 542529779 542529893 2.070000e-36 163.0
14 TraesCS5B01G522800 chr4B 97.800 591 7 1 1 585 661142707 661143297 0.000000e+00 1014.0
15 TraesCS5B01G522800 chr2A 97.800 591 7 1 1 585 59642106 59641516 0.000000e+00 1014.0
16 TraesCS5B01G522800 chr7B 93.772 562 32 2 1773 2331 482027349 482027910 0.000000e+00 841.0
17 TraesCS5B01G522800 chr7B 96.429 56 1 1 2325 2380 482027971 482027917 9.910000e-15 91.6
18 TraesCS5B01G522800 chr7B 94.643 56 2 1 2325 2380 44557370 44557424 4.610000e-13 86.1
19 TraesCS5B01G522800 chr3B 92.180 601 30 5 1 584 812805815 812806415 0.000000e+00 833.0
20 TraesCS5B01G522800 chr3B 93.345 556 35 1 1776 2331 18863814 18864367 0.000000e+00 821.0
21 TraesCS5B01G522800 chr3B 93.321 554 34 2 1778 2331 31653194 31652644 0.000000e+00 815.0
22 TraesCS5B01G522800 chr3B 94.033 486 20 7 1 482 816222293 816221813 0.000000e+00 728.0
23 TraesCS5B01G522800 chr3B 82.353 612 94 10 947 1553 620824159 620823557 1.070000e-143 520.0
24 TraesCS5B01G522800 chr3B 98.214 56 0 1 2325 2380 18864428 18864374 2.130000e-16 97.1
25 TraesCS5B01G522800 chr2D 93.345 556 37 0 1776 2331 574117635 574117080 0.000000e+00 822.0
26 TraesCS5B01G522800 chr4D 92.998 557 36 1 1778 2331 417672242 417672798 0.000000e+00 809.0
27 TraesCS5B01G522800 chr3D 92.844 559 38 1 1773 2331 578666073 578666629 0.000000e+00 809.0
28 TraesCS5B01G522800 chr3D 92.806 556 39 1 1776 2331 45032241 45031687 0.000000e+00 804.0
29 TraesCS5B01G522800 chr3D 91.051 257 17 4 1 252 519347072 519347327 2.480000e-90 342.0
30 TraesCS5B01G522800 chr3D 94.643 56 2 1 2325 2380 45031626 45031680 4.610000e-13 86.1
31 TraesCS5B01G522800 chrUn 97.284 405 8 2 1 405 242157531 242157130 0.000000e+00 684.0
32 TraesCS5B01G522800 chrUn 99.194 372 3 0 1 372 242156766 242157137 0.000000e+00 671.0
33 TraesCS5B01G522800 chrUn 87.627 493 28 10 123 582 91412098 91412590 2.280000e-150 542.0
34 TraesCS5B01G522800 chr1A 95.327 214 4 1 377 584 22920349 22920136 4.150000e-88 335.0
35 TraesCS5B01G522800 chr6B 92.093 215 11 1 377 585 81659937 81660151 5.440000e-77 298.0
36 TraesCS5B01G522800 chr6D 89.083 229 10 2 371 584 472747303 472747531 1.190000e-68 270.0
37 TraesCS5B01G522800 chr7A 92.000 75 3 2 2381 2452 671125458 671125384 4.580000e-18 102.0
38 TraesCS5B01G522800 chr7D 96.429 56 1 1 2325 2380 35003236 35003290 9.910000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G522800 chr5B 684189037 684191636 2599 False 4802 4802 100.0000 1 2600 1 chr5B.!!$F1 2599
1 TraesCS5B01G522800 chr4A 626636430 626637330 900 True 1061 1061 88.5460 810 1681 1 chr4A.!!$R1 871
2 TraesCS5B01G522800 chr1B 683523255 683523845 590 False 1042 1042 98.6460 1 585 1 chr1B.!!$F3 584
3 TraesCS5B01G522800 chr1B 662631023 662631578 555 True 797 797 92.5000 1773 2331 1 chr1B.!!$R1 558
4 TraesCS5B01G522800 chr2B 8433701 8434291 590 False 1037 1037 98.4770 1 585 1 chr2B.!!$F1 584
5 TraesCS5B01G522800 chr2B 572689417 572689975 558 False 819 819 93.2140 1776 2331 1 chr2B.!!$F2 555
6 TraesCS5B01G522800 chr5D 542529779 542530661 882 False 599 1035 92.1965 830 1678 2 chr5D.!!$F1 848
7 TraesCS5B01G522800 chr4B 661142707 661143297 590 False 1014 1014 97.8000 1 585 1 chr4B.!!$F1 584
8 TraesCS5B01G522800 chr2A 59641516 59642106 590 True 1014 1014 97.8000 1 585 1 chr2A.!!$R1 584
9 TraesCS5B01G522800 chr7B 482027349 482027910 561 False 841 841 93.7720 1773 2331 1 chr7B.!!$F2 558
10 TraesCS5B01G522800 chr3B 812805815 812806415 600 False 833 833 92.1800 1 584 1 chr3B.!!$F2 583
11 TraesCS5B01G522800 chr3B 18863814 18864367 553 False 821 821 93.3450 1776 2331 1 chr3B.!!$F1 555
12 TraesCS5B01G522800 chr3B 31652644 31653194 550 True 815 815 93.3210 1778 2331 1 chr3B.!!$R2 553
13 TraesCS5B01G522800 chr3B 620823557 620824159 602 True 520 520 82.3530 947 1553 1 chr3B.!!$R3 606
14 TraesCS5B01G522800 chr2D 574117080 574117635 555 True 822 822 93.3450 1776 2331 1 chr2D.!!$R1 555
15 TraesCS5B01G522800 chr4D 417672242 417672798 556 False 809 809 92.9980 1778 2331 1 chr4D.!!$F1 553
16 TraesCS5B01G522800 chr3D 578666073 578666629 556 False 809 809 92.8440 1773 2331 1 chr3D.!!$F3 558
17 TraesCS5B01G522800 chr3D 45031687 45032241 554 True 804 804 92.8060 1776 2331 1 chr3D.!!$R1 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
642 660 0.104934 GAGATCCAGGGGCCCTCTAA 60.105 60.0 26.02 11.72 0.0 2.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2392 2462 0.027979 CGAGTAATTGCCATGCCGTG 59.972 55.0 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
598 616 3.931907 CCCTGAGGTAATTGGATGTGA 57.068 47.619 0.00 0.00 0.00 3.58
599 617 3.813443 CCCTGAGGTAATTGGATGTGAG 58.187 50.000 0.00 0.00 0.00 3.51
600 618 3.200825 CCCTGAGGTAATTGGATGTGAGT 59.799 47.826 0.00 0.00 0.00 3.41
601 619 4.324563 CCCTGAGGTAATTGGATGTGAGTT 60.325 45.833 0.00 0.00 0.00 3.01
602 620 5.104527 CCCTGAGGTAATTGGATGTGAGTTA 60.105 44.000 0.00 0.00 0.00 2.24
603 621 6.051717 CCTGAGGTAATTGGATGTGAGTTAG 58.948 44.000 0.00 0.00 0.00 2.34
604 622 5.989477 TGAGGTAATTGGATGTGAGTTAGG 58.011 41.667 0.00 0.00 0.00 2.69
605 623 4.781934 AGGTAATTGGATGTGAGTTAGGC 58.218 43.478 0.00 0.00 0.00 3.93
606 624 4.227300 AGGTAATTGGATGTGAGTTAGGCA 59.773 41.667 0.00 0.00 0.00 4.75
607 625 4.335594 GGTAATTGGATGTGAGTTAGGCAC 59.664 45.833 0.00 0.00 36.81 5.01
614 632 2.605257 TGTGAGTTAGGCACACTACCT 58.395 47.619 0.00 0.00 41.00 3.08
615 633 2.561419 TGTGAGTTAGGCACACTACCTC 59.439 50.000 0.00 0.00 41.00 3.85
616 634 2.561419 GTGAGTTAGGCACACTACCTCA 59.439 50.000 0.00 0.00 45.52 3.86
617 635 3.236047 TGAGTTAGGCACACTACCTCAA 58.764 45.455 0.01 0.00 44.98 3.02
618 636 3.006537 TGAGTTAGGCACACTACCTCAAC 59.993 47.826 0.01 0.00 44.98 3.18
619 637 2.302157 AGTTAGGCACACTACCTCAACC 59.698 50.000 0.00 0.00 38.81 3.77
620 638 2.018355 TAGGCACACTACCTCAACCA 57.982 50.000 0.00 0.00 38.81 3.67
621 639 1.362224 AGGCACACTACCTCAACCAT 58.638 50.000 0.00 0.00 28.76 3.55
622 640 1.705186 AGGCACACTACCTCAACCATT 59.295 47.619 0.00 0.00 28.76 3.16
623 641 1.812571 GGCACACTACCTCAACCATTG 59.187 52.381 0.00 0.00 0.00 2.82
624 642 2.552155 GGCACACTACCTCAACCATTGA 60.552 50.000 0.00 0.00 38.17 2.57
634 652 1.565759 TCAACCATTGAGATCCAGGGG 59.434 52.381 0.00 0.00 34.08 4.79
635 653 0.259938 AACCATTGAGATCCAGGGGC 59.740 55.000 0.00 0.00 0.00 5.80
636 654 1.152368 CCATTGAGATCCAGGGGCC 59.848 63.158 0.00 0.00 0.00 5.80
637 655 1.152368 CATTGAGATCCAGGGGCCC 59.848 63.158 17.12 17.12 0.00 5.80
638 656 1.006631 ATTGAGATCCAGGGGCCCT 59.993 57.895 22.67 22.67 0.00 5.19
639 657 1.064824 ATTGAGATCCAGGGGCCCTC 61.065 60.000 26.02 12.43 0.00 4.30
640 658 2.200373 TTGAGATCCAGGGGCCCTCT 62.200 60.000 26.02 17.91 0.00 3.69
641 659 1.304179 TGAGATCCAGGGGCCCTCTA 61.304 60.000 26.02 14.71 0.00 2.43
642 660 0.104934 GAGATCCAGGGGCCCTCTAA 60.105 60.000 26.02 11.72 0.00 2.10
643 661 0.346932 AGATCCAGGGGCCCTCTAAA 59.653 55.000 26.02 8.79 0.00 1.85
644 662 0.474614 GATCCAGGGGCCCTCTAAAC 59.525 60.000 26.02 9.84 0.00 2.01
645 663 1.345715 ATCCAGGGGCCCTCTAAACG 61.346 60.000 26.02 10.65 0.00 3.60
646 664 2.124695 CAGGGGCCCTCTAAACGC 60.125 66.667 26.02 1.15 0.00 4.84
647 665 3.408853 AGGGGCCCTCTAAACGCC 61.409 66.667 22.67 0.26 42.23 5.68
648 666 3.723922 GGGGCCCTCTAAACGCCA 61.724 66.667 24.38 0.00 44.90 5.69
649 667 2.124695 GGGCCCTCTAAACGCCAG 60.125 66.667 17.04 0.00 44.90 4.85
650 668 2.124695 GGCCCTCTAAACGCCAGG 60.125 66.667 0.00 0.00 42.52 4.45
651 669 2.669240 GCCCTCTAAACGCCAGGT 59.331 61.111 0.00 0.00 0.00 4.00
652 670 1.002502 GCCCTCTAAACGCCAGGTT 60.003 57.895 0.00 0.00 41.76 3.50
654 672 1.905637 CCCTCTAAACGCCAGGTTTT 58.094 50.000 0.00 0.00 46.52 2.43
655 673 1.539827 CCCTCTAAACGCCAGGTTTTG 59.460 52.381 0.00 0.00 46.52 2.44
656 674 1.539827 CCTCTAAACGCCAGGTTTTGG 59.460 52.381 0.00 0.00 46.52 3.28
657 675 2.227194 CTCTAAACGCCAGGTTTTGGT 58.773 47.619 0.00 0.00 46.52 3.67
658 676 2.223745 TCTAAACGCCAGGTTTTGGTC 58.776 47.619 0.00 0.00 46.52 4.02
659 677 2.158726 TCTAAACGCCAGGTTTTGGTCT 60.159 45.455 0.00 0.00 46.52 3.85
660 678 0.744281 AAACGCCAGGTTTTGGTCTG 59.256 50.000 0.00 0.00 46.52 3.51
661 679 1.683629 AAACGCCAGGTTTTGGTCTGA 60.684 47.619 0.00 0.00 46.52 3.27
662 680 3.014584 AAACGCCAGGTTTTGGTCTGAT 61.015 45.455 0.00 0.00 46.52 2.90
663 681 4.504201 AAACGCCAGGTTTTGGTCTGATT 61.504 43.478 0.00 0.00 46.52 2.57
664 682 5.953261 AAACGCCAGGTTTTGGTCTGATTT 61.953 41.667 0.00 0.00 46.52 2.17
665 683 7.366601 AAACGCCAGGTTTTGGTCTGATTTT 62.367 40.000 0.00 0.00 46.52 1.82
666 684 9.965369 TAAACGCCAGGTTTTGGTCTGATTTTG 62.965 40.741 0.00 0.00 46.52 2.44
667 685 3.392882 CCAGGTTTTGGTCTGATTTTGC 58.607 45.455 0.00 0.00 42.41 3.68
668 686 3.392882 CAGGTTTTGGTCTGATTTTGCC 58.607 45.455 0.00 0.00 33.11 4.52
669 687 3.037549 AGGTTTTGGTCTGATTTTGCCA 58.962 40.909 0.00 0.00 0.00 4.92
670 688 3.647590 AGGTTTTGGTCTGATTTTGCCAT 59.352 39.130 0.00 0.00 0.00 4.40
671 689 3.747529 GGTTTTGGTCTGATTTTGCCATG 59.252 43.478 0.00 0.00 0.00 3.66
672 690 2.747396 TTGGTCTGATTTTGCCATGC 57.253 45.000 0.00 0.00 0.00 4.06
673 691 0.527113 TGGTCTGATTTTGCCATGCG 59.473 50.000 0.00 0.00 0.00 4.73
674 692 0.179129 GGTCTGATTTTGCCATGCGG 60.179 55.000 0.00 0.00 0.00 5.69
684 702 3.805267 CCATGCGGCTCTCAACTC 58.195 61.111 0.00 0.00 0.00 3.01
685 703 2.169789 CCATGCGGCTCTCAACTCG 61.170 63.158 0.00 0.00 0.00 4.18
686 704 1.153765 CATGCGGCTCTCAACTCGA 60.154 57.895 0.00 0.00 0.00 4.04
687 705 1.140589 ATGCGGCTCTCAACTCGAG 59.859 57.895 11.84 11.84 43.80 4.04
688 706 2.202676 GCGGCTCTCAACTCGAGG 60.203 66.667 18.41 0.00 42.55 4.63
689 707 2.701780 GCGGCTCTCAACTCGAGGA 61.702 63.158 18.41 4.20 42.55 3.71
690 708 1.137825 CGGCTCTCAACTCGAGGAC 59.862 63.158 18.41 0.00 42.55 3.85
691 709 1.137825 GGCTCTCAACTCGAGGACG 59.862 63.158 18.41 4.47 42.55 4.79
692 710 1.306642 GGCTCTCAACTCGAGGACGA 61.307 60.000 18.41 8.84 46.56 4.20
701 719 2.855887 TCGAGGACGAACAGAGGAG 58.144 57.895 0.00 0.00 45.74 3.69
702 720 0.677098 TCGAGGACGAACAGAGGAGG 60.677 60.000 0.00 0.00 45.74 4.30
703 721 1.658686 CGAGGACGAACAGAGGAGGG 61.659 65.000 0.00 0.00 42.66 4.30
704 722 1.305381 AGGACGAACAGAGGAGGGG 60.305 63.158 0.00 0.00 0.00 4.79
705 723 1.305046 GGACGAACAGAGGAGGGGA 60.305 63.158 0.00 0.00 0.00 4.81
706 724 0.688087 GGACGAACAGAGGAGGGGAT 60.688 60.000 0.00 0.00 0.00 3.85
707 725 0.747852 GACGAACAGAGGAGGGGATC 59.252 60.000 0.00 0.00 0.00 3.36
708 726 1.038130 ACGAACAGAGGAGGGGATCG 61.038 60.000 0.00 0.00 35.16 3.69
709 727 1.739338 CGAACAGAGGAGGGGATCGG 61.739 65.000 0.00 0.00 0.00 4.18
710 728 1.383248 AACAGAGGAGGGGATCGGG 60.383 63.158 0.00 0.00 0.00 5.14
711 729 2.525381 CAGAGGAGGGGATCGGGG 60.525 72.222 0.00 0.00 0.00 5.73
712 730 3.851184 AGAGGAGGGGATCGGGGG 61.851 72.222 0.00 0.00 0.00 5.40
716 734 3.878667 GAGGGGATCGGGGGCAAG 61.879 72.222 0.00 0.00 0.00 4.01
717 735 4.431524 AGGGGATCGGGGGCAAGA 62.432 66.667 0.00 0.00 0.00 3.02
718 736 3.878667 GGGGATCGGGGGCAAGAG 61.879 72.222 0.00 0.00 0.00 2.85
719 737 2.768344 GGGATCGGGGGCAAGAGA 60.768 66.667 0.00 0.00 0.00 3.10
720 738 2.375345 GGGATCGGGGGCAAGAGAA 61.375 63.158 0.00 0.00 0.00 2.87
721 739 1.147153 GGATCGGGGGCAAGAGAAG 59.853 63.158 0.00 0.00 0.00 2.85
722 740 1.147153 GATCGGGGGCAAGAGAAGG 59.853 63.158 0.00 0.00 0.00 3.46
723 741 1.306997 ATCGGGGGCAAGAGAAGGA 60.307 57.895 0.00 0.00 0.00 3.36
724 742 1.341156 ATCGGGGGCAAGAGAAGGAG 61.341 60.000 0.00 0.00 0.00 3.69
725 743 2.294078 CGGGGGCAAGAGAAGGAGT 61.294 63.158 0.00 0.00 0.00 3.85
726 744 1.604915 GGGGGCAAGAGAAGGAGTC 59.395 63.158 0.00 0.00 0.00 3.36
727 745 1.219393 GGGGCAAGAGAAGGAGTCG 59.781 63.158 0.00 0.00 0.00 4.18
728 746 1.258445 GGGGCAAGAGAAGGAGTCGA 61.258 60.000 0.00 0.00 0.00 4.20
729 747 0.174617 GGGCAAGAGAAGGAGTCGAG 59.825 60.000 0.00 0.00 0.00 4.04
730 748 1.178276 GGCAAGAGAAGGAGTCGAGA 58.822 55.000 0.00 0.00 0.00 4.04
731 749 1.754226 GGCAAGAGAAGGAGTCGAGAT 59.246 52.381 0.00 0.00 0.00 2.75
732 750 2.481104 GGCAAGAGAAGGAGTCGAGATG 60.481 54.545 0.00 0.00 0.00 2.90
733 751 2.425312 GCAAGAGAAGGAGTCGAGATGA 59.575 50.000 0.00 0.00 0.00 2.92
734 752 3.119316 GCAAGAGAAGGAGTCGAGATGAA 60.119 47.826 0.00 0.00 0.00 2.57
735 753 4.441356 GCAAGAGAAGGAGTCGAGATGAAT 60.441 45.833 0.00 0.00 0.00 2.57
736 754 4.916983 AGAGAAGGAGTCGAGATGAATG 57.083 45.455 0.00 0.00 0.00 2.67
737 755 4.277476 AGAGAAGGAGTCGAGATGAATGT 58.723 43.478 0.00 0.00 0.00 2.71
738 756 4.097741 AGAGAAGGAGTCGAGATGAATGTG 59.902 45.833 0.00 0.00 0.00 3.21
739 757 3.766591 AGAAGGAGTCGAGATGAATGTGT 59.233 43.478 0.00 0.00 0.00 3.72
740 758 4.950475 AGAAGGAGTCGAGATGAATGTGTA 59.050 41.667 0.00 0.00 0.00 2.90
741 759 5.596361 AGAAGGAGTCGAGATGAATGTGTAT 59.404 40.000 0.00 0.00 0.00 2.29
742 760 5.860941 AGGAGTCGAGATGAATGTGTATT 57.139 39.130 0.00 0.00 0.00 1.89
743 761 5.595885 AGGAGTCGAGATGAATGTGTATTG 58.404 41.667 0.00 0.00 0.00 1.90
744 762 4.747108 GGAGTCGAGATGAATGTGTATTGG 59.253 45.833 0.00 0.00 0.00 3.16
745 763 5.451937 GGAGTCGAGATGAATGTGTATTGGA 60.452 44.000 0.00 0.00 0.00 3.53
746 764 6.166984 AGTCGAGATGAATGTGTATTGGAT 57.833 37.500 0.00 0.00 0.00 3.41
747 765 5.987953 AGTCGAGATGAATGTGTATTGGATG 59.012 40.000 0.00 0.00 0.00 3.51
748 766 5.178252 GTCGAGATGAATGTGTATTGGATGG 59.822 44.000 0.00 0.00 0.00 3.51
749 767 4.083643 CGAGATGAATGTGTATTGGATGGC 60.084 45.833 0.00 0.00 0.00 4.40
750 768 4.795469 AGATGAATGTGTATTGGATGGCA 58.205 39.130 0.00 0.00 0.00 4.92
751 769 4.581824 AGATGAATGTGTATTGGATGGCAC 59.418 41.667 0.00 0.00 0.00 5.01
752 770 2.682352 TGAATGTGTATTGGATGGCACG 59.318 45.455 0.00 0.00 34.86 5.34
753 771 1.679139 ATGTGTATTGGATGGCACGG 58.321 50.000 0.00 0.00 34.86 4.94
754 772 0.393673 TGTGTATTGGATGGCACGGG 60.394 55.000 0.00 0.00 34.86 5.28
755 773 0.393808 GTGTATTGGATGGCACGGGT 60.394 55.000 0.00 0.00 0.00 5.28
756 774 1.134340 GTGTATTGGATGGCACGGGTA 60.134 52.381 0.00 0.00 0.00 3.69
757 775 1.560146 TGTATTGGATGGCACGGGTAA 59.440 47.619 0.00 0.00 0.00 2.85
758 776 2.218603 GTATTGGATGGCACGGGTAAG 58.781 52.381 0.00 0.00 0.00 2.34
759 777 0.106719 ATTGGATGGCACGGGTAAGG 60.107 55.000 0.00 0.00 0.00 2.69
760 778 1.493854 TTGGATGGCACGGGTAAGGT 61.494 55.000 0.00 0.00 0.00 3.50
761 779 0.618107 TGGATGGCACGGGTAAGGTA 60.618 55.000 0.00 0.00 0.00 3.08
762 780 0.179065 GGATGGCACGGGTAAGGTAC 60.179 60.000 0.00 0.00 0.00 3.34
763 781 0.538118 GATGGCACGGGTAAGGTACA 59.462 55.000 0.00 0.00 0.00 2.90
764 782 1.140252 GATGGCACGGGTAAGGTACAT 59.860 52.381 0.00 0.00 0.00 2.29
765 783 1.863325 TGGCACGGGTAAGGTACATA 58.137 50.000 0.00 0.00 0.00 2.29
766 784 2.400573 TGGCACGGGTAAGGTACATAT 58.599 47.619 0.00 0.00 0.00 1.78
767 785 2.773087 TGGCACGGGTAAGGTACATATT 59.227 45.455 0.00 0.00 0.00 1.28
768 786 3.966006 TGGCACGGGTAAGGTACATATTA 59.034 43.478 0.00 0.00 0.00 0.98
769 787 4.594062 TGGCACGGGTAAGGTACATATTAT 59.406 41.667 0.00 0.00 0.00 1.28
770 788 5.072058 TGGCACGGGTAAGGTACATATTATT 59.928 40.000 0.00 0.00 0.00 1.40
771 789 5.640783 GGCACGGGTAAGGTACATATTATTC 59.359 44.000 0.00 0.00 0.00 1.75
772 790 5.640783 GCACGGGTAAGGTACATATTATTCC 59.359 44.000 0.00 0.00 0.00 3.01
773 791 5.865552 CACGGGTAAGGTACATATTATTCCG 59.134 44.000 17.44 17.44 36.99 4.30
774 792 4.866486 CGGGTAAGGTACATATTATTCCGC 59.134 45.833 0.00 0.00 0.00 5.54
775 793 5.567224 CGGGTAAGGTACATATTATTCCGCA 60.567 44.000 0.00 0.00 0.00 5.69
776 794 6.412214 GGGTAAGGTACATATTATTCCGCAT 58.588 40.000 0.00 0.00 0.00 4.73
777 795 6.537660 GGGTAAGGTACATATTATTCCGCATC 59.462 42.308 0.00 0.00 0.00 3.91
778 796 6.537660 GGTAAGGTACATATTATTCCGCATCC 59.462 42.308 0.00 0.00 0.00 3.51
779 797 6.374417 AAGGTACATATTATTCCGCATCCT 57.626 37.500 0.00 0.00 0.00 3.24
780 798 6.374417 AGGTACATATTATTCCGCATCCTT 57.626 37.500 0.00 0.00 0.00 3.36
781 799 6.779860 AGGTACATATTATTCCGCATCCTTT 58.220 36.000 0.00 0.00 0.00 3.11
782 800 7.231467 AGGTACATATTATTCCGCATCCTTTT 58.769 34.615 0.00 0.00 0.00 2.27
783 801 7.724061 AGGTACATATTATTCCGCATCCTTTTT 59.276 33.333 0.00 0.00 0.00 1.94
803 821 2.418368 TTTTCAGGGATGGACCGATG 57.582 50.000 0.00 0.00 40.11 3.84
804 822 1.578897 TTTCAGGGATGGACCGATGA 58.421 50.000 0.00 0.00 40.11 2.92
805 823 1.578897 TTCAGGGATGGACCGATGAA 58.421 50.000 0.00 0.00 40.36 2.57
806 824 1.806496 TCAGGGATGGACCGATGAAT 58.194 50.000 0.00 0.00 40.11 2.57
807 825 2.970987 TCAGGGATGGACCGATGAATA 58.029 47.619 0.00 0.00 40.11 1.75
808 826 2.632996 TCAGGGATGGACCGATGAATAC 59.367 50.000 0.00 0.00 40.11 1.89
826 844 9.309516 GATGAATACGTGTTCAATCCTAACTAA 57.690 33.333 27.94 4.07 41.09 2.24
827 845 8.470040 TGAATACGTGTTCAATCCTAACTAAC 57.530 34.615 23.30 0.00 35.31 2.34
831 854 6.393171 ACGTGTTCAATCCTAACTAACTACC 58.607 40.000 0.00 0.00 0.00 3.18
847 870 5.485209 AACTACCAGGAGTACCAGAAAAG 57.515 43.478 0.00 0.00 38.94 2.27
854 877 1.628846 GAGTACCAGAAAAGGGAGCCA 59.371 52.381 0.00 0.00 0.00 4.75
867 890 4.361971 AGCCAGACTCCGACCGGA 62.362 66.667 9.46 10.97 42.90 5.14
952 1004 1.007734 ACGCCCATATAGCACGTCG 60.008 57.895 0.00 0.00 29.64 5.12
1013 1066 2.456119 CGTCGATGGCCAGCTTCAC 61.456 63.158 20.58 11.67 0.00 3.18
1039 1095 2.390599 CCGTCGTTCTGGTGCCATG 61.391 63.158 0.00 0.00 0.00 3.66
1162 1218 1.269936 TGGACGAAAGAACGTTCCTCC 60.270 52.381 24.22 18.55 46.52 4.30
1163 1219 1.058404 GACGAAAGAACGTTCCTCCG 58.942 55.000 24.22 23.56 46.52 4.63
1164 1220 0.386838 ACGAAAGAACGTTCCTCCGT 59.613 50.000 24.22 24.15 44.14 4.69
1428 1484 1.523938 GGACGGCCTTATCCTGTGC 60.524 63.158 0.00 0.00 31.75 4.57
1645 1707 2.202756 GGGAGAACGTGCTAGCCG 60.203 66.667 19.72 19.72 0.00 5.52
1653 1715 1.257743 ACGTGCTAGCCGGATGATAT 58.742 50.000 23.40 4.36 0.00 1.63
1669 1731 6.498304 GGATGATATTGCAACCTGTAGTTTG 58.502 40.000 0.00 0.00 36.18 2.93
1678 1740 1.337823 ACCTGTAGTTTGGCAGTAGCG 60.338 52.381 0.00 0.00 43.41 4.26
1681 1743 2.806244 CTGTAGTTTGGCAGTAGCGTTT 59.194 45.455 0.00 0.00 43.41 3.60
1682 1744 3.207778 TGTAGTTTGGCAGTAGCGTTTT 58.792 40.909 0.00 0.00 43.41 2.43
1683 1745 3.628487 TGTAGTTTGGCAGTAGCGTTTTT 59.372 39.130 0.00 0.00 43.41 1.94
1711 1773 6.917217 TTTTTGAAACGGATGCAAAAGATT 57.083 29.167 4.59 0.00 41.02 2.40
1712 1774 6.917217 TTTTGAAACGGATGCAAAAGATTT 57.083 29.167 0.40 0.00 36.80 2.17
1713 1775 5.903764 TTGAAACGGATGCAAAAGATTTG 57.096 34.783 0.00 0.00 0.00 2.32
1714 1776 3.740321 TGAAACGGATGCAAAAGATTTGC 59.260 39.130 18.28 18.28 45.11 3.68
1715 1777 2.368655 ACGGATGCAAAAGATTTGCC 57.631 45.000 21.21 9.59 44.32 4.52
1716 1778 1.270971 CGGATGCAAAAGATTTGCCG 58.729 50.000 21.21 14.97 44.32 5.69
1717 1779 1.001624 GGATGCAAAAGATTTGCCGC 58.998 50.000 21.21 14.11 44.32 6.53
1718 1780 1.404583 GGATGCAAAAGATTTGCCGCT 60.405 47.619 21.21 9.11 44.32 5.52
1719 1781 2.340337 GATGCAAAAGATTTGCCGCTT 58.660 42.857 21.21 7.18 44.32 4.68
1720 1782 1.782044 TGCAAAAGATTTGCCGCTTC 58.218 45.000 21.21 0.00 44.32 3.86
1721 1783 1.340889 TGCAAAAGATTTGCCGCTTCT 59.659 42.857 21.21 0.00 44.32 2.85
1722 1784 2.556189 TGCAAAAGATTTGCCGCTTCTA 59.444 40.909 21.21 2.31 44.32 2.10
1723 1785 2.917343 GCAAAAGATTTGCCGCTTCTAC 59.083 45.455 15.12 0.00 39.38 2.59
1724 1786 3.366374 GCAAAAGATTTGCCGCTTCTACT 60.366 43.478 15.12 0.00 39.38 2.57
1725 1787 4.142687 GCAAAAGATTTGCCGCTTCTACTA 60.143 41.667 15.12 0.00 39.38 1.82
1726 1788 5.449177 GCAAAAGATTTGCCGCTTCTACTAT 60.449 40.000 15.12 0.00 39.38 2.12
1727 1789 6.555315 CAAAAGATTTGCCGCTTCTACTATT 58.445 36.000 0.00 0.00 0.00 1.73
1728 1790 7.678690 GCAAAAGATTTGCCGCTTCTACTATTA 60.679 37.037 15.12 0.00 39.38 0.98
1729 1791 7.859325 AAAGATTTGCCGCTTCTACTATTAA 57.141 32.000 0.00 0.00 0.00 1.40
1730 1792 7.859325 AAGATTTGCCGCTTCTACTATTAAA 57.141 32.000 0.00 0.00 0.00 1.52
1731 1793 8.451908 AAGATTTGCCGCTTCTACTATTAAAT 57.548 30.769 0.00 0.00 0.00 1.40
1732 1794 9.555727 AAGATTTGCCGCTTCTACTATTAAATA 57.444 29.630 0.00 0.00 0.00 1.40
1733 1795 9.555727 AGATTTGCCGCTTCTACTATTAAATAA 57.444 29.630 0.00 0.00 0.00 1.40
1734 1796 9.813080 GATTTGCCGCTTCTACTATTAAATAAG 57.187 33.333 0.00 0.00 0.00 1.73
1735 1797 7.724305 TTGCCGCTTCTACTATTAAATAAGG 57.276 36.000 0.00 0.00 0.00 2.69
1736 1798 6.228258 TGCCGCTTCTACTATTAAATAAGGG 58.772 40.000 0.00 0.00 0.00 3.95
1737 1799 6.042322 TGCCGCTTCTACTATTAAATAAGGGA 59.958 38.462 0.00 0.00 0.00 4.20
1738 1800 6.590677 GCCGCTTCTACTATTAAATAAGGGAG 59.409 42.308 0.00 0.00 0.00 4.30
1739 1801 7.525029 GCCGCTTCTACTATTAAATAAGGGAGA 60.525 40.741 0.00 0.00 0.00 3.71
1740 1802 8.365647 CCGCTTCTACTATTAAATAAGGGAGAA 58.634 37.037 0.00 0.00 0.00 2.87
1741 1803 9.413048 CGCTTCTACTATTAAATAAGGGAGAAG 57.587 37.037 17.50 17.50 39.81 2.85
1753 1815 8.768501 AAATAAGGGAGAAGAAAGTTTGAAGT 57.231 30.769 0.00 0.00 0.00 3.01
1754 1816 8.768501 AATAAGGGAGAAGAAAGTTTGAAGTT 57.231 30.769 0.00 0.00 0.00 2.66
1755 1817 8.768501 ATAAGGGAGAAGAAAGTTTGAAGTTT 57.231 30.769 0.00 0.00 34.41 2.66
1756 1818 7.482169 AAGGGAGAAGAAAGTTTGAAGTTTT 57.518 32.000 0.00 0.00 32.00 2.43
1757 1819 8.589701 AAGGGAGAAGAAAGTTTGAAGTTTTA 57.410 30.769 0.00 0.00 32.00 1.52
1758 1820 7.997482 AGGGAGAAGAAAGTTTGAAGTTTTAC 58.003 34.615 0.00 0.00 32.00 2.01
1759 1821 7.614192 AGGGAGAAGAAAGTTTGAAGTTTTACA 59.386 33.333 0.00 0.00 32.00 2.41
1760 1822 8.248253 GGGAGAAGAAAGTTTGAAGTTTTACAA 58.752 33.333 0.00 0.00 32.00 2.41
1761 1823 9.634163 GGAGAAGAAAGTTTGAAGTTTTACAAA 57.366 29.630 0.00 0.00 32.00 2.83
1767 1829 9.588774 GAAAGTTTGAAGTTTTACAAAAACACC 57.411 29.630 15.43 8.32 37.66 4.16
1768 1830 7.661127 AGTTTGAAGTTTTACAAAAACACCC 57.339 32.000 15.43 6.41 37.66 4.61
1769 1831 7.217906 AGTTTGAAGTTTTACAAAAACACCCA 58.782 30.769 15.43 8.36 37.66 4.51
1770 1832 7.171848 AGTTTGAAGTTTTACAAAAACACCCAC 59.828 33.333 15.43 7.07 37.66 4.61
1771 1833 6.097915 TGAAGTTTTACAAAAACACCCACA 57.902 33.333 15.43 6.81 32.81 4.17
1849 1911 4.619227 AACCGCACTCACCCACCG 62.619 66.667 0.00 0.00 0.00 4.94
1915 1981 0.322975 AGCAACACACTCCCTAGCAG 59.677 55.000 0.00 0.00 0.00 4.24
1923 1989 3.258372 CACACTCCCTAGCAGTACAAGAA 59.742 47.826 0.00 0.00 0.00 2.52
1933 1999 2.604079 TACAAGAACCGCCGGGGA 60.604 61.111 21.95 0.00 39.97 4.81
2022 2091 2.439409 TCAAGAAGGATACGACACCGA 58.561 47.619 0.00 0.00 46.39 4.69
2152 2221 3.875727 CAGTCCGTCCGAAGATAGAGTAA 59.124 47.826 0.00 0.00 0.00 2.24
2197 2266 4.619227 CACCGAACGCCACACCCT 62.619 66.667 0.00 0.00 0.00 4.34
2331 2401 2.203788 ACCAAGTCCTCCGAGCCA 60.204 61.111 0.00 0.00 0.00 4.75
2332 2402 2.286523 ACCAAGTCCTCCGAGCCAG 61.287 63.158 0.00 0.00 0.00 4.85
2333 2403 2.581354 CAAGTCCTCCGAGCCAGG 59.419 66.667 0.00 0.00 0.00 4.45
2334 2404 2.685380 AAGTCCTCCGAGCCAGGG 60.685 66.667 0.00 0.00 0.00 4.45
2335 2405 4.787280 AGTCCTCCGAGCCAGGGG 62.787 72.222 0.00 0.00 0.00 4.79
2342 2412 4.697756 CGAGCCAGGGGTGCGAAA 62.698 66.667 0.00 0.00 0.00 3.46
2343 2413 2.747855 GAGCCAGGGGTGCGAAAG 60.748 66.667 0.00 0.00 0.00 2.62
2344 2414 4.351054 AGCCAGGGGTGCGAAAGG 62.351 66.667 0.00 0.00 0.00 3.11
2363 2433 4.934989 GGATCCTTTCCGCTCGTT 57.065 55.556 3.84 0.00 33.93 3.85
2364 2434 3.154589 GGATCCTTTCCGCTCGTTT 57.845 52.632 3.84 0.00 33.93 3.60
2365 2435 1.007580 GGATCCTTTCCGCTCGTTTC 58.992 55.000 3.84 0.00 33.93 2.78
2366 2436 1.405661 GGATCCTTTCCGCTCGTTTCT 60.406 52.381 3.84 0.00 33.93 2.52
2367 2437 1.661112 GATCCTTTCCGCTCGTTTCTG 59.339 52.381 0.00 0.00 0.00 3.02
2368 2438 0.949105 TCCTTTCCGCTCGTTTCTGC 60.949 55.000 0.00 0.00 0.00 4.26
2374 2444 2.556287 GCTCGTTTCTGCGGTTGG 59.444 61.111 0.00 0.00 0.00 3.77
2375 2445 2.966309 GCTCGTTTCTGCGGTTGGG 61.966 63.158 0.00 0.00 0.00 4.12
2376 2446 1.597027 CTCGTTTCTGCGGTTGGGT 60.597 57.895 0.00 0.00 0.00 4.51
2377 2447 1.153127 TCGTTTCTGCGGTTGGGTT 60.153 52.632 0.00 0.00 0.00 4.11
2378 2448 0.106335 TCGTTTCTGCGGTTGGGTTA 59.894 50.000 0.00 0.00 0.00 2.85
2379 2449 0.515564 CGTTTCTGCGGTTGGGTTAG 59.484 55.000 0.00 0.00 0.00 2.34
2380 2450 1.874739 CGTTTCTGCGGTTGGGTTAGA 60.875 52.381 0.00 0.00 0.00 2.10
2381 2451 1.804748 GTTTCTGCGGTTGGGTTAGAG 59.195 52.381 0.00 0.00 0.00 2.43
2382 2452 0.321298 TTCTGCGGTTGGGTTAGAGC 60.321 55.000 0.00 0.00 0.00 4.09
2383 2453 1.003839 CTGCGGTTGGGTTAGAGCA 60.004 57.895 0.00 0.00 0.00 4.26
2384 2454 1.298859 CTGCGGTTGGGTTAGAGCAC 61.299 60.000 0.00 0.00 0.00 4.40
2385 2455 2.038837 GCGGTTGGGTTAGAGCACC 61.039 63.158 0.00 0.00 35.88 5.01
2394 2464 2.629051 GGTTAGAGCACCCACATACAC 58.371 52.381 0.00 0.00 0.00 2.90
2395 2465 2.268298 GTTAGAGCACCCACATACACG 58.732 52.381 0.00 0.00 0.00 4.49
2396 2466 0.821517 TAGAGCACCCACATACACGG 59.178 55.000 0.00 0.00 0.00 4.94
2397 2467 2.046314 AGCACCCACATACACGGC 60.046 61.111 0.00 0.00 0.00 5.68
2398 2468 2.359354 GCACCCACATACACGGCA 60.359 61.111 0.00 0.00 0.00 5.69
2399 2469 1.748879 GCACCCACATACACGGCAT 60.749 57.895 0.00 0.00 0.00 4.40
2400 2470 1.992233 GCACCCACATACACGGCATG 61.992 60.000 0.00 0.00 0.00 4.06
2401 2471 1.077787 ACCCACATACACGGCATGG 60.078 57.895 0.00 0.00 0.00 3.66
2402 2472 2.480610 CCCACATACACGGCATGGC 61.481 63.158 9.69 9.69 0.00 4.40
2403 2473 1.748500 CCACATACACGGCATGGCA 60.749 57.895 20.37 0.00 0.00 4.92
2404 2474 1.311651 CCACATACACGGCATGGCAA 61.312 55.000 20.37 1.48 0.00 4.52
2405 2475 0.740149 CACATACACGGCATGGCAAT 59.260 50.000 20.37 3.38 0.00 3.56
2406 2476 1.134753 CACATACACGGCATGGCAATT 59.865 47.619 20.37 4.42 0.00 2.32
2407 2477 2.357323 CACATACACGGCATGGCAATTA 59.643 45.455 20.37 6.62 0.00 1.40
2408 2478 2.357637 ACATACACGGCATGGCAATTAC 59.642 45.455 20.37 0.00 0.00 1.89
2409 2479 2.411628 TACACGGCATGGCAATTACT 57.588 45.000 20.37 0.00 0.00 2.24
2410 2480 1.094785 ACACGGCATGGCAATTACTC 58.905 50.000 20.37 0.00 0.00 2.59
2411 2481 0.027979 CACGGCATGGCAATTACTCG 59.972 55.000 20.37 2.47 0.00 4.18
2412 2482 0.392461 ACGGCATGGCAATTACTCGT 60.392 50.000 20.37 3.15 0.00 4.18
2413 2483 0.027979 CGGCATGGCAATTACTCGTG 59.972 55.000 20.37 0.00 0.00 4.35
2414 2484 0.248621 GGCATGGCAATTACTCGTGC 60.249 55.000 15.47 9.30 41.25 5.34
2415 2485 0.451383 GCATGGCAATTACTCGTGCA 59.549 50.000 11.67 0.00 42.74 4.57
2416 2486 1.135431 GCATGGCAATTACTCGTGCAA 60.135 47.619 11.67 0.00 42.74 4.08
2417 2487 2.670789 GCATGGCAATTACTCGTGCAAA 60.671 45.455 11.67 0.00 42.74 3.68
2418 2488 3.573598 CATGGCAATTACTCGTGCAAAA 58.426 40.909 0.00 0.00 42.74 2.44
2419 2489 3.717400 TGGCAATTACTCGTGCAAAAA 57.283 38.095 0.00 0.00 42.74 1.94
2443 2513 5.012328 AGAATCCTAGTCTTTTAGCACCG 57.988 43.478 0.00 0.00 0.00 4.94
2444 2514 3.821421 ATCCTAGTCTTTTAGCACCGG 57.179 47.619 0.00 0.00 0.00 5.28
2445 2515 1.206371 TCCTAGTCTTTTAGCACCGGC 59.794 52.381 0.00 0.00 41.61 6.13
2446 2516 1.066430 CCTAGTCTTTTAGCACCGGCA 60.066 52.381 0.00 0.00 44.61 5.69
2447 2517 2.271800 CTAGTCTTTTAGCACCGGCAG 58.728 52.381 0.00 0.00 44.61 4.85
2448 2518 0.396811 AGTCTTTTAGCACCGGCAGT 59.603 50.000 0.00 0.00 44.61 4.40
2449 2519 1.621814 AGTCTTTTAGCACCGGCAGTA 59.378 47.619 0.00 0.00 44.61 2.74
2450 2520 2.038033 AGTCTTTTAGCACCGGCAGTAA 59.962 45.455 0.00 0.00 44.61 2.24
2451 2521 3.007635 GTCTTTTAGCACCGGCAGTAAT 58.992 45.455 0.00 0.00 44.61 1.89
2452 2522 3.063588 GTCTTTTAGCACCGGCAGTAATC 59.936 47.826 0.00 0.00 44.61 1.75
2453 2523 3.055385 TCTTTTAGCACCGGCAGTAATCT 60.055 43.478 0.00 0.00 44.61 2.40
2454 2524 4.160814 TCTTTTAGCACCGGCAGTAATCTA 59.839 41.667 0.00 0.00 44.61 1.98
2455 2525 3.728076 TTAGCACCGGCAGTAATCTAG 57.272 47.619 0.00 0.00 44.61 2.43
2456 2526 0.753262 AGCACCGGCAGTAATCTAGG 59.247 55.000 0.00 0.00 44.61 3.02
2457 2527 0.880718 GCACCGGCAGTAATCTAGGC 60.881 60.000 0.00 0.00 40.72 3.93
2458 2528 0.753262 CACCGGCAGTAATCTAGGCT 59.247 55.000 0.00 0.00 0.00 4.58
2459 2529 1.041437 ACCGGCAGTAATCTAGGCTC 58.959 55.000 0.00 0.00 0.00 4.70
2460 2530 0.039074 CCGGCAGTAATCTAGGCTCG 60.039 60.000 0.00 0.00 0.00 5.03
2461 2531 0.664767 CGGCAGTAATCTAGGCTCGC 60.665 60.000 0.00 0.00 0.00 5.03
2462 2532 0.676736 GGCAGTAATCTAGGCTCGCT 59.323 55.000 0.00 0.00 0.00 4.93
2463 2533 1.604185 GGCAGTAATCTAGGCTCGCTG 60.604 57.143 0.00 0.00 0.00 5.18
2464 2534 1.604185 GCAGTAATCTAGGCTCGCTGG 60.604 57.143 0.00 0.00 0.00 4.85
2465 2535 1.683917 CAGTAATCTAGGCTCGCTGGT 59.316 52.381 0.00 0.00 0.00 4.00
2466 2536 2.885266 CAGTAATCTAGGCTCGCTGGTA 59.115 50.000 0.00 0.00 0.00 3.25
2467 2537 2.885894 AGTAATCTAGGCTCGCTGGTAC 59.114 50.000 0.00 0.00 0.00 3.34
2468 2538 2.074729 AATCTAGGCTCGCTGGTACT 57.925 50.000 0.00 0.00 0.00 2.73
2469 2539 2.953284 ATCTAGGCTCGCTGGTACTA 57.047 50.000 0.00 0.00 0.00 1.82
2470 2540 1.964552 TCTAGGCTCGCTGGTACTAC 58.035 55.000 0.00 0.00 0.00 2.73
2471 2541 1.211212 TCTAGGCTCGCTGGTACTACA 59.789 52.381 0.00 0.00 0.00 2.74
2472 2542 2.022195 CTAGGCTCGCTGGTACTACAA 58.978 52.381 0.00 0.00 0.00 2.41
2473 2543 0.531200 AGGCTCGCTGGTACTACAAC 59.469 55.000 0.00 0.00 0.00 3.32
2474 2544 0.245539 GGCTCGCTGGTACTACAACA 59.754 55.000 0.00 0.00 0.00 3.33
2475 2545 1.347320 GCTCGCTGGTACTACAACAC 58.653 55.000 0.00 0.00 0.00 3.32
2476 2546 1.992170 CTCGCTGGTACTACAACACC 58.008 55.000 0.00 0.00 35.24 4.16
2477 2547 1.271379 CTCGCTGGTACTACAACACCA 59.729 52.381 0.00 0.00 42.54 4.17
2482 2552 3.947910 TGGTACTACAACACCAGCTAC 57.052 47.619 0.00 0.00 39.91 3.58
2483 2553 2.564062 TGGTACTACAACACCAGCTACC 59.436 50.000 0.00 0.00 39.91 3.18
2484 2554 2.564062 GGTACTACAACACCAGCTACCA 59.436 50.000 0.00 0.00 34.77 3.25
2485 2555 3.368116 GGTACTACAACACCAGCTACCAG 60.368 52.174 0.00 0.00 34.77 4.00
2486 2556 1.002087 ACTACAACACCAGCTACCAGC 59.998 52.381 0.00 0.00 42.84 4.85
2487 2557 1.001974 CTACAACACCAGCTACCAGCA 59.998 52.381 0.38 0.00 45.56 4.41
2488 2558 0.535102 ACAACACCAGCTACCAGCAC 60.535 55.000 0.38 0.00 45.56 4.40
2489 2559 0.250467 CAACACCAGCTACCAGCACT 60.250 55.000 0.38 0.00 45.56 4.40
2490 2560 0.474184 AACACCAGCTACCAGCACTT 59.526 50.000 0.38 0.00 45.56 3.16
2491 2561 0.035458 ACACCAGCTACCAGCACTTC 59.965 55.000 0.38 0.00 45.56 3.01
2492 2562 0.322975 CACCAGCTACCAGCACTTCT 59.677 55.000 0.38 0.00 45.56 2.85
2493 2563 1.059913 ACCAGCTACCAGCACTTCTT 58.940 50.000 0.38 0.00 45.56 2.52
2494 2564 1.271054 ACCAGCTACCAGCACTTCTTG 60.271 52.381 0.38 0.00 45.56 3.02
2495 2565 1.446907 CAGCTACCAGCACTTCTTGG 58.553 55.000 0.38 0.00 45.56 3.61
2496 2566 1.002430 CAGCTACCAGCACTTCTTGGA 59.998 52.381 0.38 0.00 45.56 3.53
2497 2567 1.277557 AGCTACCAGCACTTCTTGGAG 59.722 52.381 0.38 0.00 45.56 3.86
2498 2568 1.677217 GCTACCAGCACTTCTTGGAGG 60.677 57.143 0.00 0.00 41.89 4.30
2499 2569 1.902508 CTACCAGCACTTCTTGGAGGA 59.097 52.381 0.00 0.00 0.00 3.71
2500 2570 1.140312 ACCAGCACTTCTTGGAGGAA 58.860 50.000 0.00 0.00 0.00 3.36
2501 2571 1.707427 ACCAGCACTTCTTGGAGGAAT 59.293 47.619 0.00 0.00 0.00 3.01
2502 2572 2.108952 ACCAGCACTTCTTGGAGGAATT 59.891 45.455 0.00 0.00 0.00 2.17
2503 2573 3.160269 CCAGCACTTCTTGGAGGAATTT 58.840 45.455 0.00 0.00 0.00 1.82
2504 2574 3.575687 CCAGCACTTCTTGGAGGAATTTT 59.424 43.478 0.00 0.00 0.00 1.82
2505 2575 4.766891 CCAGCACTTCTTGGAGGAATTTTA 59.233 41.667 0.00 0.00 0.00 1.52
2506 2576 5.420104 CCAGCACTTCTTGGAGGAATTTTAT 59.580 40.000 0.00 0.00 0.00 1.40
2507 2577 6.327934 CAGCACTTCTTGGAGGAATTTTATG 58.672 40.000 0.00 0.00 0.00 1.90
2508 2578 5.105063 GCACTTCTTGGAGGAATTTTATGC 58.895 41.667 0.00 0.00 0.00 3.14
2509 2579 5.105595 GCACTTCTTGGAGGAATTTTATGCT 60.106 40.000 0.00 0.00 0.00 3.79
2510 2580 6.558909 CACTTCTTGGAGGAATTTTATGCTC 58.441 40.000 0.00 0.00 37.08 4.26
2511 2581 6.151648 CACTTCTTGGAGGAATTTTATGCTCA 59.848 38.462 0.00 0.00 39.33 4.26
2512 2582 6.894103 ACTTCTTGGAGGAATTTTATGCTCAT 59.106 34.615 0.00 0.00 39.33 2.90
2513 2583 7.398332 ACTTCTTGGAGGAATTTTATGCTCATT 59.602 33.333 0.00 0.00 39.33 2.57
2514 2584 7.722949 TCTTGGAGGAATTTTATGCTCATTT 57.277 32.000 0.00 0.00 39.33 2.32
2515 2585 8.137745 TCTTGGAGGAATTTTATGCTCATTTT 57.862 30.769 0.00 0.00 39.33 1.82
2516 2586 8.036575 TCTTGGAGGAATTTTATGCTCATTTTG 58.963 33.333 0.00 0.00 39.33 2.44
2517 2587 6.642430 TGGAGGAATTTTATGCTCATTTTGG 58.358 36.000 0.00 0.00 39.33 3.28
2518 2588 6.051074 GGAGGAATTTTATGCTCATTTTGGG 58.949 40.000 0.00 0.00 39.33 4.12
2519 2589 6.127083 GGAGGAATTTTATGCTCATTTTGGGA 60.127 38.462 0.00 0.00 39.33 4.37
2520 2590 7.256494 AGGAATTTTATGCTCATTTTGGGAA 57.744 32.000 0.00 0.00 0.00 3.97
2521 2591 7.688343 AGGAATTTTATGCTCATTTTGGGAAA 58.312 30.769 0.00 0.00 0.00 3.13
2522 2592 8.330993 AGGAATTTTATGCTCATTTTGGGAAAT 58.669 29.630 0.00 0.00 35.90 2.17
2523 2593 8.959548 GGAATTTTATGCTCATTTTGGGAAATT 58.040 29.630 0.00 0.00 33.25 1.82
2524 2594 9.777575 GAATTTTATGCTCATTTTGGGAAATTG 57.222 29.630 0.00 0.00 33.25 2.32
2525 2595 8.866970 ATTTTATGCTCATTTTGGGAAATTGT 57.133 26.923 0.00 0.00 33.25 2.71
2526 2596 9.956640 ATTTTATGCTCATTTTGGGAAATTGTA 57.043 25.926 0.00 0.00 33.25 2.41
2527 2597 9.784531 TTTTATGCTCATTTTGGGAAATTGTAA 57.215 25.926 0.00 0.00 33.25 2.41
2528 2598 9.956640 TTTATGCTCATTTTGGGAAATTGTAAT 57.043 25.926 0.00 0.00 33.25 1.89
2529 2599 9.956640 TTATGCTCATTTTGGGAAATTGTAATT 57.043 25.926 0.00 0.00 33.25 1.40
2530 2600 7.670009 TGCTCATTTTGGGAAATTGTAATTG 57.330 32.000 0.00 0.00 33.25 2.32
2531 2601 6.654161 TGCTCATTTTGGGAAATTGTAATTGG 59.346 34.615 0.00 0.00 33.25 3.16
2532 2602 6.093909 GCTCATTTTGGGAAATTGTAATTGGG 59.906 38.462 0.00 0.00 33.25 4.12
2533 2603 6.479884 TCATTTTGGGAAATTGTAATTGGGG 58.520 36.000 0.00 0.00 33.25 4.96
2534 2604 4.917906 TTTGGGAAATTGTAATTGGGGG 57.082 40.909 0.00 0.00 0.00 5.40
2535 2605 3.569135 TGGGAAATTGTAATTGGGGGT 57.431 42.857 0.00 0.00 0.00 4.95
2536 2606 3.875571 TGGGAAATTGTAATTGGGGGTT 58.124 40.909 0.00 0.00 0.00 4.11
2537 2607 3.584848 TGGGAAATTGTAATTGGGGGTTG 59.415 43.478 0.00 0.00 0.00 3.77
2538 2608 3.585289 GGGAAATTGTAATTGGGGGTTGT 59.415 43.478 0.00 0.00 0.00 3.32
2539 2609 4.564613 GGGAAATTGTAATTGGGGGTTGTG 60.565 45.833 0.00 0.00 0.00 3.33
2540 2610 4.041075 GGAAATTGTAATTGGGGGTTGTGT 59.959 41.667 0.00 0.00 0.00 3.72
2541 2611 5.246429 GGAAATTGTAATTGGGGGTTGTGTA 59.754 40.000 0.00 0.00 0.00 2.90
2542 2612 6.070481 GGAAATTGTAATTGGGGGTTGTGTAT 60.070 38.462 0.00 0.00 0.00 2.29
2543 2613 7.124448 GGAAATTGTAATTGGGGGTTGTGTATA 59.876 37.037 0.00 0.00 0.00 1.47
2544 2614 8.616799 AAATTGTAATTGGGGGTTGTGTATAT 57.383 30.769 0.00 0.00 0.00 0.86
2545 2615 7.595819 ATTGTAATTGGGGGTTGTGTATATG 57.404 36.000 0.00 0.00 0.00 1.78
2546 2616 6.080969 TGTAATTGGGGGTTGTGTATATGT 57.919 37.500 0.00 0.00 0.00 2.29
2547 2617 6.123651 TGTAATTGGGGGTTGTGTATATGTC 58.876 40.000 0.00 0.00 0.00 3.06
2548 2618 4.871871 ATTGGGGGTTGTGTATATGTCA 57.128 40.909 0.00 0.00 0.00 3.58
2549 2619 4.871871 TTGGGGGTTGTGTATATGTCAT 57.128 40.909 0.00 0.00 0.00 3.06
2550 2620 4.163441 TGGGGGTTGTGTATATGTCATG 57.837 45.455 0.00 0.00 0.00 3.07
2551 2621 2.884639 GGGGGTTGTGTATATGTCATGC 59.115 50.000 0.00 0.00 0.00 4.06
2552 2622 3.550820 GGGGTTGTGTATATGTCATGCA 58.449 45.455 0.00 0.00 0.00 3.96
2553 2623 3.315191 GGGGTTGTGTATATGTCATGCAC 59.685 47.826 0.00 3.25 35.62 4.57
2554 2624 4.199310 GGGTTGTGTATATGTCATGCACT 58.801 43.478 14.03 0.00 35.97 4.40
2555 2625 4.273480 GGGTTGTGTATATGTCATGCACTC 59.727 45.833 14.03 6.30 35.97 3.51
2556 2626 4.875536 GGTTGTGTATATGTCATGCACTCA 59.124 41.667 14.03 8.14 35.97 3.41
2557 2627 5.528690 GGTTGTGTATATGTCATGCACTCAT 59.471 40.000 14.03 0.00 35.97 2.90
2568 2638 4.274421 CATGCACTCATGTGACTGAATC 57.726 45.455 0.94 0.00 46.55 2.52
2569 2639 2.703416 TGCACTCATGTGACTGAATCC 58.297 47.619 0.94 0.00 46.55 3.01
2570 2640 2.303890 TGCACTCATGTGACTGAATCCT 59.696 45.455 0.94 0.00 46.55 3.24
2571 2641 3.244665 TGCACTCATGTGACTGAATCCTT 60.245 43.478 0.94 0.00 46.55 3.36
2572 2642 3.126514 GCACTCATGTGACTGAATCCTTG 59.873 47.826 0.94 0.00 46.55 3.61
2573 2643 4.321718 CACTCATGTGACTGAATCCTTGT 58.678 43.478 0.94 0.00 46.55 3.16
2574 2644 4.153655 CACTCATGTGACTGAATCCTTGTG 59.846 45.833 0.94 0.00 46.55 3.33
2575 2645 3.076621 TCATGTGACTGAATCCTTGTGC 58.923 45.455 0.00 0.00 0.00 4.57
2576 2646 2.636647 TGTGACTGAATCCTTGTGCA 57.363 45.000 0.00 0.00 0.00 4.57
2577 2647 3.144657 TGTGACTGAATCCTTGTGCAT 57.855 42.857 0.00 0.00 0.00 3.96
2578 2648 3.489355 TGTGACTGAATCCTTGTGCATT 58.511 40.909 0.00 0.00 0.00 3.56
2579 2649 3.890756 TGTGACTGAATCCTTGTGCATTT 59.109 39.130 0.00 0.00 0.00 2.32
2580 2650 4.341806 TGTGACTGAATCCTTGTGCATTTT 59.658 37.500 0.00 0.00 0.00 1.82
2581 2651 5.163426 TGTGACTGAATCCTTGTGCATTTTT 60.163 36.000 0.00 0.00 0.00 1.94
2582 2652 5.176223 GTGACTGAATCCTTGTGCATTTTTG 59.824 40.000 0.00 0.00 0.00 2.44
2583 2653 5.068855 TGACTGAATCCTTGTGCATTTTTGA 59.931 36.000 0.00 0.00 0.00 2.69
2584 2654 6.105397 ACTGAATCCTTGTGCATTTTTGAT 57.895 33.333 0.00 0.00 0.00 2.57
2585 2655 7.039853 TGACTGAATCCTTGTGCATTTTTGATA 60.040 33.333 0.00 0.00 0.00 2.15
2586 2656 7.669427 ACTGAATCCTTGTGCATTTTTGATAA 58.331 30.769 0.00 0.00 0.00 1.75
2587 2657 7.599998 ACTGAATCCTTGTGCATTTTTGATAAC 59.400 33.333 0.00 0.00 0.00 1.89
2588 2658 6.873076 TGAATCCTTGTGCATTTTTGATAACC 59.127 34.615 0.00 0.00 0.00 2.85
2589 2659 6.610075 ATCCTTGTGCATTTTTGATAACCT 57.390 33.333 0.00 0.00 0.00 3.50
2590 2660 6.418057 TCCTTGTGCATTTTTGATAACCTT 57.582 33.333 0.00 0.00 0.00 3.50
2591 2661 6.825610 TCCTTGTGCATTTTTGATAACCTTT 58.174 32.000 0.00 0.00 0.00 3.11
2592 2662 7.278875 TCCTTGTGCATTTTTGATAACCTTTT 58.721 30.769 0.00 0.00 0.00 2.27
2593 2663 7.440856 TCCTTGTGCATTTTTGATAACCTTTTC 59.559 33.333 0.00 0.00 0.00 2.29
2594 2664 7.226325 CCTTGTGCATTTTTGATAACCTTTTCA 59.774 33.333 0.00 0.00 0.00 2.69
2595 2665 8.674263 TTGTGCATTTTTGATAACCTTTTCAT 57.326 26.923 0.00 0.00 0.00 2.57
2596 2666 8.674263 TGTGCATTTTTGATAACCTTTTCATT 57.326 26.923 0.00 0.00 0.00 2.57
2597 2667 9.118300 TGTGCATTTTTGATAACCTTTTCATTT 57.882 25.926 0.00 0.00 0.00 2.32
2598 2668 9.384682 GTGCATTTTTGATAACCTTTTCATTTG 57.615 29.630 0.00 0.00 0.00 2.32
2599 2669 8.074972 TGCATTTTTGATAACCTTTTCATTTGC 58.925 29.630 0.00 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
469 481 1.959989 GCCAAATTTCCAGGACCGGAT 60.960 52.381 9.46 0.00 34.19 4.18
585 603 4.941263 TGTGCCTAACTCACATCCAATTAC 59.059 41.667 0.00 0.00 39.29 1.89
586 604 4.941263 GTGTGCCTAACTCACATCCAATTA 59.059 41.667 0.00 0.00 44.96 1.40
587 605 3.758554 GTGTGCCTAACTCACATCCAATT 59.241 43.478 0.00 0.00 44.96 2.32
588 606 3.009473 AGTGTGCCTAACTCACATCCAAT 59.991 43.478 0.00 0.00 44.96 3.16
589 607 2.371841 AGTGTGCCTAACTCACATCCAA 59.628 45.455 0.00 0.00 44.96 3.53
590 608 1.977854 AGTGTGCCTAACTCACATCCA 59.022 47.619 0.00 0.00 44.96 3.41
591 609 2.770164 AGTGTGCCTAACTCACATCC 57.230 50.000 0.00 0.00 44.96 3.51
592 610 3.195825 AGGTAGTGTGCCTAACTCACATC 59.804 47.826 0.00 0.00 39.64 3.06
593 611 3.173965 AGGTAGTGTGCCTAACTCACAT 58.826 45.455 0.00 0.00 39.64 3.21
594 612 2.605257 AGGTAGTGTGCCTAACTCACA 58.395 47.619 0.00 0.00 39.64 3.58
598 616 2.302157 GGTTGAGGTAGTGTGCCTAACT 59.698 50.000 0.00 0.00 46.70 2.24
599 617 2.038033 TGGTTGAGGTAGTGTGCCTAAC 59.962 50.000 0.00 0.00 36.29 2.34
600 618 2.331166 TGGTTGAGGTAGTGTGCCTAA 58.669 47.619 0.00 0.00 36.29 2.69
601 619 2.018355 TGGTTGAGGTAGTGTGCCTA 57.982 50.000 0.00 0.00 36.29 3.93
602 620 1.362224 ATGGTTGAGGTAGTGTGCCT 58.638 50.000 0.00 0.00 39.42 4.75
603 621 1.812571 CAATGGTTGAGGTAGTGTGCC 59.187 52.381 0.00 0.00 0.00 5.01
604 622 2.778299 TCAATGGTTGAGGTAGTGTGC 58.222 47.619 0.00 0.00 34.08 4.57
614 632 1.565759 CCCCTGGATCTCAATGGTTGA 59.434 52.381 0.00 0.00 38.17 3.18
615 633 2.025863 GCCCCTGGATCTCAATGGTTG 61.026 57.143 0.00 0.00 0.00 3.77
616 634 0.259938 GCCCCTGGATCTCAATGGTT 59.740 55.000 0.00 0.00 0.00 3.67
617 635 1.649271 GGCCCCTGGATCTCAATGGT 61.649 60.000 0.00 0.00 0.00 3.55
618 636 1.152368 GGCCCCTGGATCTCAATGG 59.848 63.158 0.00 0.00 0.00 3.16
619 637 1.152368 GGGCCCCTGGATCTCAATG 59.848 63.158 12.23 0.00 0.00 2.82
620 638 1.006631 AGGGCCCCTGGATCTCAAT 59.993 57.895 21.43 0.00 29.57 2.57
621 639 1.694169 GAGGGCCCCTGGATCTCAA 60.694 63.158 21.43 0.00 31.76 3.02
622 640 1.304179 TAGAGGGCCCCTGGATCTCA 61.304 60.000 21.43 0.79 31.76 3.27
623 641 0.104934 TTAGAGGGCCCCTGGATCTC 60.105 60.000 21.43 7.63 31.76 2.75
624 642 0.346932 TTTAGAGGGCCCCTGGATCT 59.653 55.000 21.43 17.28 31.76 2.75
625 643 0.474614 GTTTAGAGGGCCCCTGGATC 59.525 60.000 21.43 9.39 31.76 3.36
626 644 1.345715 CGTTTAGAGGGCCCCTGGAT 61.346 60.000 21.43 0.00 31.76 3.41
627 645 1.993391 CGTTTAGAGGGCCCCTGGA 60.993 63.158 21.43 6.14 31.76 3.86
628 646 2.590092 CGTTTAGAGGGCCCCTGG 59.410 66.667 21.43 3.41 31.76 4.45
629 647 2.124695 GCGTTTAGAGGGCCCCTG 60.125 66.667 21.43 4.60 31.76 4.45
630 648 3.408853 GGCGTTTAGAGGGCCCCT 61.409 66.667 21.43 18.15 41.01 4.79
631 649 3.699134 CTGGCGTTTAGAGGGCCCC 62.699 68.421 21.43 10.60 46.31 5.80
632 650 2.124695 CTGGCGTTTAGAGGGCCC 60.125 66.667 16.46 16.46 46.31 5.80
633 651 3.943574 AAACCTGGCGTTTAGAGGGCC 62.944 57.143 0.00 0.00 43.03 5.80
634 652 0.608308 AAACCTGGCGTTTAGAGGGC 60.608 55.000 0.00 0.00 43.03 5.19
635 653 1.539827 CAAAACCTGGCGTTTAGAGGG 59.460 52.381 0.00 0.00 44.09 4.30
636 654 1.539827 CCAAAACCTGGCGTTTAGAGG 59.460 52.381 0.00 0.00 44.09 3.69
637 655 2.989422 CCAAAACCTGGCGTTTAGAG 57.011 50.000 0.00 0.00 44.09 2.43
647 665 3.181467 TGGCAAAATCAGACCAAAACCTG 60.181 43.478 0.00 0.00 0.00 4.00
648 666 3.037549 TGGCAAAATCAGACCAAAACCT 58.962 40.909 0.00 0.00 0.00 3.50
649 667 3.467374 TGGCAAAATCAGACCAAAACC 57.533 42.857 0.00 0.00 0.00 3.27
650 668 3.187022 GCATGGCAAAATCAGACCAAAAC 59.813 43.478 0.00 0.00 35.41 2.43
651 669 3.401182 GCATGGCAAAATCAGACCAAAA 58.599 40.909 0.00 0.00 35.41 2.44
652 670 2.609984 CGCATGGCAAAATCAGACCAAA 60.610 45.455 0.00 0.00 35.41 3.28
653 671 1.067706 CGCATGGCAAAATCAGACCAA 60.068 47.619 0.00 0.00 35.41 3.67
654 672 0.527113 CGCATGGCAAAATCAGACCA 59.473 50.000 0.00 0.00 36.43 4.02
655 673 0.179129 CCGCATGGCAAAATCAGACC 60.179 55.000 0.00 0.00 0.00 3.85
656 674 3.334078 CCGCATGGCAAAATCAGAC 57.666 52.632 0.00 0.00 0.00 3.51
667 685 2.169789 CGAGTTGAGAGCCGCATGG 61.170 63.158 0.00 0.00 38.77 3.66
668 686 1.153765 TCGAGTTGAGAGCCGCATG 60.154 57.895 0.00 0.00 0.00 4.06
669 687 3.288484 TCGAGTTGAGAGCCGCAT 58.712 55.556 0.00 0.00 0.00 4.73
677 695 1.535896 TCTGTTCGTCCTCGAGTTGAG 59.464 52.381 12.31 0.00 46.81 3.02
678 696 1.535896 CTCTGTTCGTCCTCGAGTTGA 59.464 52.381 12.31 2.98 46.81 3.18
679 697 1.401670 CCTCTGTTCGTCCTCGAGTTG 60.402 57.143 12.31 0.32 46.81 3.16
680 698 0.882474 CCTCTGTTCGTCCTCGAGTT 59.118 55.000 12.31 0.00 46.81 3.01
681 699 0.036448 TCCTCTGTTCGTCCTCGAGT 59.964 55.000 12.31 0.00 46.81 4.18
682 700 0.730265 CTCCTCTGTTCGTCCTCGAG 59.270 60.000 5.13 5.13 46.81 4.04
683 701 0.677098 CCTCCTCTGTTCGTCCTCGA 60.677 60.000 0.00 0.00 44.66 4.04
684 702 1.658686 CCCTCCTCTGTTCGTCCTCG 61.659 65.000 0.00 0.00 38.55 4.63
685 703 1.324005 CCCCTCCTCTGTTCGTCCTC 61.324 65.000 0.00 0.00 0.00 3.71
686 704 1.305381 CCCCTCCTCTGTTCGTCCT 60.305 63.158 0.00 0.00 0.00 3.85
687 705 0.688087 ATCCCCTCCTCTGTTCGTCC 60.688 60.000 0.00 0.00 0.00 4.79
688 706 0.747852 GATCCCCTCCTCTGTTCGTC 59.252 60.000 0.00 0.00 0.00 4.20
689 707 1.038130 CGATCCCCTCCTCTGTTCGT 61.038 60.000 0.00 0.00 0.00 3.85
690 708 1.736586 CGATCCCCTCCTCTGTTCG 59.263 63.158 0.00 0.00 0.00 3.95
691 709 1.403687 CCCGATCCCCTCCTCTGTTC 61.404 65.000 0.00 0.00 0.00 3.18
692 710 1.383248 CCCGATCCCCTCCTCTGTT 60.383 63.158 0.00 0.00 0.00 3.16
693 711 2.283809 CCCGATCCCCTCCTCTGT 59.716 66.667 0.00 0.00 0.00 3.41
694 712 2.525381 CCCCGATCCCCTCCTCTG 60.525 72.222 0.00 0.00 0.00 3.35
695 713 3.851184 CCCCCGATCCCCTCCTCT 61.851 72.222 0.00 0.00 0.00 3.69
699 717 3.878667 CTTGCCCCCGATCCCCTC 61.879 72.222 0.00 0.00 0.00 4.30
700 718 4.431524 TCTTGCCCCCGATCCCCT 62.432 66.667 0.00 0.00 0.00 4.79
701 719 3.878667 CTCTTGCCCCCGATCCCC 61.879 72.222 0.00 0.00 0.00 4.81
702 720 2.330924 CTTCTCTTGCCCCCGATCCC 62.331 65.000 0.00 0.00 0.00 3.85
703 721 1.147153 CTTCTCTTGCCCCCGATCC 59.853 63.158 0.00 0.00 0.00 3.36
704 722 1.147153 CCTTCTCTTGCCCCCGATC 59.853 63.158 0.00 0.00 0.00 3.69
705 723 1.306997 TCCTTCTCTTGCCCCCGAT 60.307 57.895 0.00 0.00 0.00 4.18
706 724 1.990060 CTCCTTCTCTTGCCCCCGA 60.990 63.158 0.00 0.00 0.00 5.14
707 725 2.245438 GACTCCTTCTCTTGCCCCCG 62.245 65.000 0.00 0.00 0.00 5.73
708 726 1.604915 GACTCCTTCTCTTGCCCCC 59.395 63.158 0.00 0.00 0.00 5.40
709 727 1.219393 CGACTCCTTCTCTTGCCCC 59.781 63.158 0.00 0.00 0.00 5.80
710 728 0.174617 CTCGACTCCTTCTCTTGCCC 59.825 60.000 0.00 0.00 0.00 5.36
711 729 1.178276 TCTCGACTCCTTCTCTTGCC 58.822 55.000 0.00 0.00 0.00 4.52
712 730 2.425312 TCATCTCGACTCCTTCTCTTGC 59.575 50.000 0.00 0.00 0.00 4.01
713 731 4.710423 TTCATCTCGACTCCTTCTCTTG 57.290 45.455 0.00 0.00 0.00 3.02
714 732 4.709397 ACATTCATCTCGACTCCTTCTCTT 59.291 41.667 0.00 0.00 0.00 2.85
715 733 4.097741 CACATTCATCTCGACTCCTTCTCT 59.902 45.833 0.00 0.00 0.00 3.10
716 734 4.142271 ACACATTCATCTCGACTCCTTCTC 60.142 45.833 0.00 0.00 0.00 2.87
717 735 3.766591 ACACATTCATCTCGACTCCTTCT 59.233 43.478 0.00 0.00 0.00 2.85
718 736 4.116747 ACACATTCATCTCGACTCCTTC 57.883 45.455 0.00 0.00 0.00 3.46
719 737 5.860941 ATACACATTCATCTCGACTCCTT 57.139 39.130 0.00 0.00 0.00 3.36
720 738 5.452496 CCAATACACATTCATCTCGACTCCT 60.452 44.000 0.00 0.00 0.00 3.69
721 739 4.747108 CCAATACACATTCATCTCGACTCC 59.253 45.833 0.00 0.00 0.00 3.85
722 740 5.592054 TCCAATACACATTCATCTCGACTC 58.408 41.667 0.00 0.00 0.00 3.36
723 741 5.598416 TCCAATACACATTCATCTCGACT 57.402 39.130 0.00 0.00 0.00 4.18
724 742 5.178252 CCATCCAATACACATTCATCTCGAC 59.822 44.000 0.00 0.00 0.00 4.20
725 743 5.299949 CCATCCAATACACATTCATCTCGA 58.700 41.667 0.00 0.00 0.00 4.04
726 744 4.083643 GCCATCCAATACACATTCATCTCG 60.084 45.833 0.00 0.00 0.00 4.04
727 745 4.823442 TGCCATCCAATACACATTCATCTC 59.177 41.667 0.00 0.00 0.00 2.75
728 746 4.581824 GTGCCATCCAATACACATTCATCT 59.418 41.667 0.00 0.00 33.23 2.90
729 747 4.555313 CGTGCCATCCAATACACATTCATC 60.555 45.833 0.00 0.00 33.23 2.92
730 748 3.316029 CGTGCCATCCAATACACATTCAT 59.684 43.478 0.00 0.00 33.23 2.57
731 749 2.682352 CGTGCCATCCAATACACATTCA 59.318 45.455 0.00 0.00 33.23 2.57
732 750 2.033299 CCGTGCCATCCAATACACATTC 59.967 50.000 0.00 0.00 33.23 2.67
733 751 2.023673 CCGTGCCATCCAATACACATT 58.976 47.619 0.00 0.00 33.23 2.71
734 752 1.679139 CCGTGCCATCCAATACACAT 58.321 50.000 0.00 0.00 33.23 3.21
735 753 0.393673 CCCGTGCCATCCAATACACA 60.394 55.000 0.00 0.00 33.23 3.72
736 754 0.393808 ACCCGTGCCATCCAATACAC 60.394 55.000 0.00 0.00 0.00 2.90
737 755 1.205055 TACCCGTGCCATCCAATACA 58.795 50.000 0.00 0.00 0.00 2.29
738 756 2.218603 CTTACCCGTGCCATCCAATAC 58.781 52.381 0.00 0.00 0.00 1.89
739 757 1.142060 CCTTACCCGTGCCATCCAATA 59.858 52.381 0.00 0.00 0.00 1.90
740 758 0.106719 CCTTACCCGTGCCATCCAAT 60.107 55.000 0.00 0.00 0.00 3.16
741 759 1.301623 CCTTACCCGTGCCATCCAA 59.698 57.895 0.00 0.00 0.00 3.53
742 760 0.618107 TACCTTACCCGTGCCATCCA 60.618 55.000 0.00 0.00 0.00 3.41
743 761 0.179065 GTACCTTACCCGTGCCATCC 60.179 60.000 0.00 0.00 0.00 3.51
744 762 0.538118 TGTACCTTACCCGTGCCATC 59.462 55.000 0.00 0.00 0.00 3.51
745 763 1.209621 ATGTACCTTACCCGTGCCAT 58.790 50.000 0.00 0.00 0.00 4.40
746 764 1.863325 TATGTACCTTACCCGTGCCA 58.137 50.000 0.00 0.00 0.00 4.92
747 765 3.480505 AATATGTACCTTACCCGTGCC 57.519 47.619 0.00 0.00 0.00 5.01
748 766 5.640783 GGAATAATATGTACCTTACCCGTGC 59.359 44.000 0.00 0.00 0.00 5.34
749 767 5.865552 CGGAATAATATGTACCTTACCCGTG 59.134 44.000 0.00 0.00 0.00 4.94
750 768 5.567423 GCGGAATAATATGTACCTTACCCGT 60.567 44.000 0.00 0.00 33.01 5.28
751 769 4.866486 GCGGAATAATATGTACCTTACCCG 59.134 45.833 0.00 0.00 33.31 5.28
752 770 5.797051 TGCGGAATAATATGTACCTTACCC 58.203 41.667 0.00 0.00 0.00 3.69
753 771 6.537660 GGATGCGGAATAATATGTACCTTACC 59.462 42.308 0.00 0.00 0.00 2.85
754 772 7.328737 AGGATGCGGAATAATATGTACCTTAC 58.671 38.462 0.00 0.00 0.00 2.34
755 773 7.490657 AGGATGCGGAATAATATGTACCTTA 57.509 36.000 0.00 0.00 0.00 2.69
756 774 6.374417 AGGATGCGGAATAATATGTACCTT 57.626 37.500 0.00 0.00 0.00 3.50
757 775 6.374417 AAGGATGCGGAATAATATGTACCT 57.626 37.500 0.00 0.00 0.00 3.08
758 776 7.448748 AAAAGGATGCGGAATAATATGTACC 57.551 36.000 0.00 0.00 0.00 3.34
783 801 2.307392 TCATCGGTCCATCCCTGAAAAA 59.693 45.455 0.00 0.00 0.00 1.94
784 802 1.912731 TCATCGGTCCATCCCTGAAAA 59.087 47.619 0.00 0.00 0.00 2.29
785 803 1.578897 TCATCGGTCCATCCCTGAAA 58.421 50.000 0.00 0.00 0.00 2.69
786 804 1.578897 TTCATCGGTCCATCCCTGAA 58.421 50.000 0.00 0.00 34.25 3.02
787 805 1.806496 ATTCATCGGTCCATCCCTGA 58.194 50.000 0.00 0.00 0.00 3.86
788 806 2.610479 CGTATTCATCGGTCCATCCCTG 60.610 54.545 0.00 0.00 0.00 4.45
789 807 1.618837 CGTATTCATCGGTCCATCCCT 59.381 52.381 0.00 0.00 0.00 4.20
790 808 1.343465 ACGTATTCATCGGTCCATCCC 59.657 52.381 0.00 0.00 0.00 3.85
791 809 2.223971 ACACGTATTCATCGGTCCATCC 60.224 50.000 0.00 0.00 0.00 3.51
792 810 3.093717 ACACGTATTCATCGGTCCATC 57.906 47.619 0.00 0.00 0.00 3.51
793 811 3.118920 TGAACACGTATTCATCGGTCCAT 60.119 43.478 4.88 0.00 33.62 3.41
794 812 2.231721 TGAACACGTATTCATCGGTCCA 59.768 45.455 4.88 0.00 33.62 4.02
795 813 2.883574 TGAACACGTATTCATCGGTCC 58.116 47.619 4.88 0.00 33.62 4.46
796 814 4.025979 GGATTGAACACGTATTCATCGGTC 60.026 45.833 10.54 6.65 38.37 4.79
797 815 3.869246 GGATTGAACACGTATTCATCGGT 59.131 43.478 10.54 0.00 38.37 4.69
798 816 4.119862 AGGATTGAACACGTATTCATCGG 58.880 43.478 10.54 0.00 38.37 4.18
799 817 6.475727 AGTTAGGATTGAACACGTATTCATCG 59.524 38.462 10.54 0.00 38.37 3.84
800 818 7.772332 AGTTAGGATTGAACACGTATTCATC 57.228 36.000 10.54 9.73 38.37 2.92
801 819 9.095065 GTTAGTTAGGATTGAACACGTATTCAT 57.905 33.333 10.54 0.71 38.37 2.57
802 820 8.308931 AGTTAGTTAGGATTGAACACGTATTCA 58.691 33.333 4.88 4.88 36.80 2.57
803 821 8.699283 AGTTAGTTAGGATTGAACACGTATTC 57.301 34.615 0.00 0.00 0.00 1.75
804 822 9.578439 GTAGTTAGTTAGGATTGAACACGTATT 57.422 33.333 0.00 0.00 0.00 1.89
805 823 8.193438 GGTAGTTAGTTAGGATTGAACACGTAT 58.807 37.037 0.00 0.00 0.00 3.06
806 824 7.176515 TGGTAGTTAGTTAGGATTGAACACGTA 59.823 37.037 0.00 0.00 0.00 3.57
807 825 6.015180 TGGTAGTTAGTTAGGATTGAACACGT 60.015 38.462 0.00 0.00 0.00 4.49
808 826 6.392354 TGGTAGTTAGTTAGGATTGAACACG 58.608 40.000 0.00 0.00 0.00 4.49
826 844 3.838903 CCTTTTCTGGTACTCCTGGTAGT 59.161 47.826 0.00 0.00 34.13 2.73
827 845 3.197983 CCCTTTTCTGGTACTCCTGGTAG 59.802 52.174 0.00 0.00 34.13 3.18
831 854 2.355209 GCTCCCTTTTCTGGTACTCCTG 60.355 54.545 0.00 0.00 34.23 3.86
854 877 0.538977 TCAGTTTCCGGTCGGAGTCT 60.539 55.000 12.07 11.29 46.06 3.24
867 890 1.667212 GAACCGTTCCGTGTTCAGTTT 59.333 47.619 0.00 0.00 37.18 2.66
937 960 3.909776 TTAGTCGACGTGCTATATGGG 57.090 47.619 10.46 0.00 0.00 4.00
952 1004 3.250280 TCTGATCGCCTGTCGTATTAGTC 59.750 47.826 0.00 0.00 39.67 2.59
1245 1301 3.785859 TCCAGGCAGATCGGGCAC 61.786 66.667 20.83 7.32 35.46 5.01
1553 1609 3.121030 GCATCAAGCCGACACGCT 61.121 61.111 0.00 0.00 42.22 5.07
1645 1707 6.460123 CCAAACTACAGGTTGCAATATCATCC 60.460 42.308 0.59 0.00 38.29 3.51
1653 1715 1.680735 CTGCCAAACTACAGGTTGCAA 59.319 47.619 0.00 0.00 36.73 4.08
1688 1750 6.917217 AATCTTTTGCATCCGTTTCAAAAA 57.083 29.167 0.00 0.00 38.65 1.94
1689 1751 6.713520 CAAATCTTTTGCATCCGTTTCAAAA 58.286 32.000 0.00 0.00 37.36 2.44
1690 1752 5.277250 GCAAATCTTTTGCATCCGTTTCAAA 60.277 36.000 17.54 0.00 44.34 2.69
1691 1753 4.210955 GCAAATCTTTTGCATCCGTTTCAA 59.789 37.500 17.54 0.00 44.34 2.69
1692 1754 3.740321 GCAAATCTTTTGCATCCGTTTCA 59.260 39.130 17.54 0.00 44.34 2.69
1693 1755 3.123453 GGCAAATCTTTTGCATCCGTTTC 59.877 43.478 22.22 3.41 46.58 2.78
1694 1756 3.066380 GGCAAATCTTTTGCATCCGTTT 58.934 40.909 22.22 0.00 46.58 3.60
1695 1757 2.687370 GGCAAATCTTTTGCATCCGTT 58.313 42.857 22.22 0.00 46.58 4.44
1696 1758 1.402720 CGGCAAATCTTTTGCATCCGT 60.403 47.619 22.22 0.00 46.58 4.69
1697 1759 1.270971 CGGCAAATCTTTTGCATCCG 58.729 50.000 22.22 14.54 46.58 4.18
1698 1760 1.001624 GCGGCAAATCTTTTGCATCC 58.998 50.000 22.22 9.21 46.58 3.51
1699 1761 2.000429 AGCGGCAAATCTTTTGCATC 58.000 45.000 22.22 14.34 46.58 3.91
1700 1762 2.028748 AGAAGCGGCAAATCTTTTGCAT 60.029 40.909 22.22 8.45 46.58 3.96
1701 1763 1.340889 AGAAGCGGCAAATCTTTTGCA 59.659 42.857 22.22 0.00 46.58 4.08
1702 1764 2.070262 AGAAGCGGCAAATCTTTTGC 57.930 45.000 14.88 14.88 44.22 3.68
1703 1765 4.425577 AGTAGAAGCGGCAAATCTTTTG 57.574 40.909 1.45 0.00 0.00 2.44
1704 1766 6.759497 AATAGTAGAAGCGGCAAATCTTTT 57.241 33.333 1.45 0.00 0.00 2.27
1705 1767 7.859325 TTAATAGTAGAAGCGGCAAATCTTT 57.141 32.000 1.45 0.00 0.00 2.52
1706 1768 7.859325 TTTAATAGTAGAAGCGGCAAATCTT 57.141 32.000 1.45 0.00 0.00 2.40
1707 1769 9.555727 TTATTTAATAGTAGAAGCGGCAAATCT 57.444 29.630 1.45 5.49 0.00 2.40
1708 1770 9.813080 CTTATTTAATAGTAGAAGCGGCAAATC 57.187 33.333 1.45 0.00 0.00 2.17
1709 1771 8.784043 CCTTATTTAATAGTAGAAGCGGCAAAT 58.216 33.333 1.45 0.00 0.00 2.32
1710 1772 7.227910 CCCTTATTTAATAGTAGAAGCGGCAAA 59.772 37.037 1.45 0.00 0.00 3.68
1711 1773 6.708949 CCCTTATTTAATAGTAGAAGCGGCAA 59.291 38.462 1.45 0.00 0.00 4.52
1712 1774 6.042322 TCCCTTATTTAATAGTAGAAGCGGCA 59.958 38.462 1.45 0.00 0.00 5.69
1713 1775 6.461640 TCCCTTATTTAATAGTAGAAGCGGC 58.538 40.000 0.00 0.00 0.00 6.53
1714 1776 7.893658 TCTCCCTTATTTAATAGTAGAAGCGG 58.106 38.462 0.00 0.00 0.00 5.52
1715 1777 9.413048 CTTCTCCCTTATTTAATAGTAGAAGCG 57.587 37.037 0.00 0.00 33.36 4.68
1727 1789 9.862149 ACTTCAAACTTTCTTCTCCCTTATTTA 57.138 29.630 0.00 0.00 0.00 1.40
1728 1790 8.768501 ACTTCAAACTTTCTTCTCCCTTATTT 57.231 30.769 0.00 0.00 0.00 1.40
1729 1791 8.768501 AACTTCAAACTTTCTTCTCCCTTATT 57.231 30.769 0.00 0.00 0.00 1.40
1730 1792 8.768501 AAACTTCAAACTTTCTTCTCCCTTAT 57.231 30.769 0.00 0.00 0.00 1.73
1731 1793 8.589701 AAAACTTCAAACTTTCTTCTCCCTTA 57.410 30.769 0.00 0.00 0.00 2.69
1732 1794 7.482169 AAAACTTCAAACTTTCTTCTCCCTT 57.518 32.000 0.00 0.00 0.00 3.95
1733 1795 7.614192 TGTAAAACTTCAAACTTTCTTCTCCCT 59.386 33.333 0.00 0.00 0.00 4.20
1734 1796 7.768240 TGTAAAACTTCAAACTTTCTTCTCCC 58.232 34.615 0.00 0.00 0.00 4.30
1735 1797 9.634163 TTTGTAAAACTTCAAACTTTCTTCTCC 57.366 29.630 0.00 0.00 0.00 3.71
1741 1803 9.588774 GGTGTTTTTGTAAAACTTCAAACTTTC 57.411 29.630 14.07 0.00 34.05 2.62
1742 1804 8.561212 GGGTGTTTTTGTAAAACTTCAAACTTT 58.439 29.630 14.07 0.00 34.05 2.66
1743 1805 7.715686 TGGGTGTTTTTGTAAAACTTCAAACTT 59.284 29.630 14.07 0.00 34.05 2.66
1744 1806 7.171848 GTGGGTGTTTTTGTAAAACTTCAAACT 59.828 33.333 14.07 0.00 34.05 2.66
1745 1807 7.041984 TGTGGGTGTTTTTGTAAAACTTCAAAC 60.042 33.333 14.07 5.62 34.05 2.93
1746 1808 6.990349 TGTGGGTGTTTTTGTAAAACTTCAAA 59.010 30.769 14.07 4.89 32.75 2.69
1747 1809 6.522054 TGTGGGTGTTTTTGTAAAACTTCAA 58.478 32.000 14.07 0.91 0.00 2.69
1748 1810 6.097915 TGTGGGTGTTTTTGTAAAACTTCA 57.902 33.333 14.07 8.23 0.00 3.02
1749 1811 8.880878 ATATGTGGGTGTTTTTGTAAAACTTC 57.119 30.769 14.07 8.52 0.00 3.01
1750 1812 7.650104 CGATATGTGGGTGTTTTTGTAAAACTT 59.350 33.333 14.07 0.00 0.00 2.66
1751 1813 7.013464 TCGATATGTGGGTGTTTTTGTAAAACT 59.987 33.333 14.07 0.00 0.00 2.66
1752 1814 7.140048 TCGATATGTGGGTGTTTTTGTAAAAC 58.860 34.615 7.83 7.83 0.00 2.43
1753 1815 7.273320 TCGATATGTGGGTGTTTTTGTAAAA 57.727 32.000 0.00 0.00 0.00 1.52
1754 1816 6.879276 TCGATATGTGGGTGTTTTTGTAAA 57.121 33.333 0.00 0.00 0.00 2.01
1755 1817 6.879276 TTCGATATGTGGGTGTTTTTGTAA 57.121 33.333 0.00 0.00 0.00 2.41
1756 1818 6.879276 TTTCGATATGTGGGTGTTTTTGTA 57.121 33.333 0.00 0.00 0.00 2.41
1757 1819 5.776173 TTTCGATATGTGGGTGTTTTTGT 57.224 34.783 0.00 0.00 0.00 2.83
1758 1820 6.145371 CCTTTTTCGATATGTGGGTGTTTTTG 59.855 38.462 0.00 0.00 0.00 2.44
1759 1821 6.220201 CCTTTTTCGATATGTGGGTGTTTTT 58.780 36.000 0.00 0.00 0.00 1.94
1760 1822 5.778862 CCTTTTTCGATATGTGGGTGTTTT 58.221 37.500 0.00 0.00 0.00 2.43
1761 1823 4.321675 GCCTTTTTCGATATGTGGGTGTTT 60.322 41.667 0.00 0.00 0.00 2.83
1762 1824 3.192633 GCCTTTTTCGATATGTGGGTGTT 59.807 43.478 0.00 0.00 0.00 3.32
1763 1825 2.752903 GCCTTTTTCGATATGTGGGTGT 59.247 45.455 0.00 0.00 0.00 4.16
1764 1826 3.016736 AGCCTTTTTCGATATGTGGGTG 58.983 45.455 0.00 0.00 0.00 4.61
1765 1827 3.366052 AGCCTTTTTCGATATGTGGGT 57.634 42.857 0.00 0.00 0.00 4.51
1766 1828 4.672409 GAAAGCCTTTTTCGATATGTGGG 58.328 43.478 0.00 0.00 0.00 4.61
1821 1883 1.817941 GTGCGGTTGTATCGGGCAT 60.818 57.895 0.00 0.00 35.88 4.40
1915 1981 2.435410 CCCCGGCGGTTCTTGTAC 60.435 66.667 26.32 0.00 0.00 2.90
1933 1999 1.594293 CGGTGTTCACGGCTGAAGT 60.594 57.895 0.00 0.00 37.06 3.01
2059 2128 2.338620 CGTCGTGTTGCTCCAGGA 59.661 61.111 0.00 0.00 0.00 3.86
2152 2221 0.406361 TATTGGCCGGGGTGAAAACT 59.594 50.000 2.18 0.00 0.00 2.66
2332 2402 4.796495 ATCCGCCTTTCGCACCCC 62.796 66.667 0.00 0.00 37.30 4.95
2333 2403 3.202706 GATCCGCCTTTCGCACCC 61.203 66.667 0.00 0.00 37.30 4.61
2334 2404 3.202706 GGATCCGCCTTTCGCACC 61.203 66.667 0.00 0.00 37.30 5.01
2346 2416 1.007580 GAAACGAGCGGAAAGGATCC 58.992 55.000 2.48 2.48 45.57 3.36
2347 2417 1.661112 CAGAAACGAGCGGAAAGGATC 59.339 52.381 0.00 0.00 0.00 3.36
2348 2418 1.726853 CAGAAACGAGCGGAAAGGAT 58.273 50.000 0.00 0.00 0.00 3.24
2349 2419 0.949105 GCAGAAACGAGCGGAAAGGA 60.949 55.000 0.00 0.00 0.00 3.36
2350 2420 1.497722 GCAGAAACGAGCGGAAAGG 59.502 57.895 0.00 0.00 0.00 3.11
2357 2427 2.556287 CCAACCGCAGAAACGAGC 59.444 61.111 0.00 0.00 34.06 5.03
2358 2428 1.164041 AACCCAACCGCAGAAACGAG 61.164 55.000 0.00 0.00 34.06 4.18
2359 2429 0.106335 TAACCCAACCGCAGAAACGA 59.894 50.000 0.00 0.00 34.06 3.85
2360 2430 0.515564 CTAACCCAACCGCAGAAACG 59.484 55.000 0.00 0.00 0.00 3.60
2361 2431 1.804748 CTCTAACCCAACCGCAGAAAC 59.195 52.381 0.00 0.00 0.00 2.78
2362 2432 1.880646 GCTCTAACCCAACCGCAGAAA 60.881 52.381 0.00 0.00 0.00 2.52
2363 2433 0.321298 GCTCTAACCCAACCGCAGAA 60.321 55.000 0.00 0.00 0.00 3.02
2364 2434 1.295423 GCTCTAACCCAACCGCAGA 59.705 57.895 0.00 0.00 0.00 4.26
2365 2435 1.003839 TGCTCTAACCCAACCGCAG 60.004 57.895 0.00 0.00 0.00 5.18
2366 2436 1.302192 GTGCTCTAACCCAACCGCA 60.302 57.895 0.00 0.00 0.00 5.69
2367 2437 2.038837 GGTGCTCTAACCCAACCGC 61.039 63.158 0.00 0.00 33.79 5.68
2368 2438 4.296265 GGTGCTCTAACCCAACCG 57.704 61.111 0.00 0.00 33.79 4.44
2374 2444 2.629051 GTGTATGTGGGTGCTCTAACC 58.371 52.381 0.00 0.00 39.71 2.85
2375 2445 2.268298 CGTGTATGTGGGTGCTCTAAC 58.732 52.381 0.00 0.00 0.00 2.34
2376 2446 1.206132 CCGTGTATGTGGGTGCTCTAA 59.794 52.381 0.00 0.00 0.00 2.10
2377 2447 0.821517 CCGTGTATGTGGGTGCTCTA 59.178 55.000 0.00 0.00 0.00 2.43
2378 2448 1.596934 CCGTGTATGTGGGTGCTCT 59.403 57.895 0.00 0.00 0.00 4.09
2379 2449 2.106683 GCCGTGTATGTGGGTGCTC 61.107 63.158 0.00 0.00 0.00 4.26
2380 2450 2.046314 GCCGTGTATGTGGGTGCT 60.046 61.111 0.00 0.00 0.00 4.40
2381 2451 1.748879 ATGCCGTGTATGTGGGTGC 60.749 57.895 0.00 0.00 0.00 5.01
2382 2452 1.375853 CCATGCCGTGTATGTGGGTG 61.376 60.000 0.00 0.00 0.00 4.61
2383 2453 1.077787 CCATGCCGTGTATGTGGGT 60.078 57.895 0.00 0.00 0.00 4.51
2384 2454 2.480610 GCCATGCCGTGTATGTGGG 61.481 63.158 0.00 0.00 0.00 4.61
2385 2455 1.311651 TTGCCATGCCGTGTATGTGG 61.312 55.000 0.00 0.00 0.00 4.17
2386 2456 0.740149 ATTGCCATGCCGTGTATGTG 59.260 50.000 0.00 0.00 0.00 3.21
2387 2457 1.473258 AATTGCCATGCCGTGTATGT 58.527 45.000 0.00 0.00 0.00 2.29
2388 2458 2.618241 AGTAATTGCCATGCCGTGTATG 59.382 45.455 0.00 0.00 0.00 2.39
2389 2459 2.878406 GAGTAATTGCCATGCCGTGTAT 59.122 45.455 0.00 0.00 0.00 2.29
2390 2460 2.285083 GAGTAATTGCCATGCCGTGTA 58.715 47.619 0.00 0.00 0.00 2.90
2391 2461 1.094785 GAGTAATTGCCATGCCGTGT 58.905 50.000 0.00 0.00 0.00 4.49
2392 2462 0.027979 CGAGTAATTGCCATGCCGTG 59.972 55.000 0.00 0.00 0.00 4.94
2393 2463 0.392461 ACGAGTAATTGCCATGCCGT 60.392 50.000 0.00 0.00 0.00 5.68
2394 2464 0.027979 CACGAGTAATTGCCATGCCG 59.972 55.000 0.00 0.00 0.00 5.69
2395 2465 0.248621 GCACGAGTAATTGCCATGCC 60.249 55.000 0.00 0.00 0.00 4.40
2396 2466 0.451383 TGCACGAGTAATTGCCATGC 59.549 50.000 7.15 7.15 0.00 4.06
2397 2467 2.917701 TTGCACGAGTAATTGCCATG 57.082 45.000 0.00 0.00 0.00 3.66
2398 2468 3.932545 TTTTGCACGAGTAATTGCCAT 57.067 38.095 0.00 0.00 0.00 4.40
2399 2469 3.717400 TTTTTGCACGAGTAATTGCCA 57.283 38.095 0.00 0.00 0.00 4.92
2417 2487 7.094762 CGGTGCTAAAAGACTAGGATTCTTTTT 60.095 37.037 19.06 8.31 46.47 1.94
2419 2489 5.875359 CGGTGCTAAAAGACTAGGATTCTTT 59.125 40.000 0.00 0.00 43.67 2.52
2420 2490 5.420409 CGGTGCTAAAAGACTAGGATTCTT 58.580 41.667 0.00 0.00 34.66 2.52
2421 2491 4.141914 CCGGTGCTAAAAGACTAGGATTCT 60.142 45.833 0.00 0.00 0.00 2.40
2422 2492 4.120589 CCGGTGCTAAAAGACTAGGATTC 58.879 47.826 0.00 0.00 0.00 2.52
2423 2493 3.681874 GCCGGTGCTAAAAGACTAGGATT 60.682 47.826 1.90 0.00 33.53 3.01
2424 2494 2.158943 GCCGGTGCTAAAAGACTAGGAT 60.159 50.000 1.90 0.00 33.53 3.24
2425 2495 1.206371 GCCGGTGCTAAAAGACTAGGA 59.794 52.381 1.90 0.00 33.53 2.94
2426 2496 1.066430 TGCCGGTGCTAAAAGACTAGG 60.066 52.381 1.90 0.00 38.71 3.02
2427 2497 2.271800 CTGCCGGTGCTAAAAGACTAG 58.728 52.381 1.90 0.00 38.71 2.57
2428 2498 1.621814 ACTGCCGGTGCTAAAAGACTA 59.378 47.619 1.90 0.00 38.71 2.59
2429 2499 0.396811 ACTGCCGGTGCTAAAAGACT 59.603 50.000 1.90 0.00 38.71 3.24
2430 2500 2.088950 TACTGCCGGTGCTAAAAGAC 57.911 50.000 1.90 0.00 38.71 3.01
2431 2501 2.843401 TTACTGCCGGTGCTAAAAGA 57.157 45.000 1.90 0.00 38.71 2.52
2432 2502 3.270877 AGATTACTGCCGGTGCTAAAAG 58.729 45.455 1.90 0.00 38.71 2.27
2433 2503 3.343941 AGATTACTGCCGGTGCTAAAA 57.656 42.857 1.90 0.00 38.71 1.52
2434 2504 3.181469 CCTAGATTACTGCCGGTGCTAAA 60.181 47.826 1.90 0.00 38.71 1.85
2435 2505 2.364324 CCTAGATTACTGCCGGTGCTAA 59.636 50.000 1.90 0.00 38.71 3.09
2436 2506 1.961394 CCTAGATTACTGCCGGTGCTA 59.039 52.381 1.90 0.00 38.71 3.49
2437 2507 0.753262 CCTAGATTACTGCCGGTGCT 59.247 55.000 1.90 0.00 38.71 4.40
2438 2508 0.880718 GCCTAGATTACTGCCGGTGC 60.881 60.000 1.90 0.00 38.26 5.01
2439 2509 0.753262 AGCCTAGATTACTGCCGGTG 59.247 55.000 1.90 0.00 0.00 4.94
2440 2510 1.041437 GAGCCTAGATTACTGCCGGT 58.959 55.000 1.90 0.00 0.00 5.28
2441 2511 0.039074 CGAGCCTAGATTACTGCCGG 60.039 60.000 0.00 0.00 0.00 6.13
2442 2512 0.664767 GCGAGCCTAGATTACTGCCG 60.665 60.000 0.00 0.00 0.00 5.69
2443 2513 0.676736 AGCGAGCCTAGATTACTGCC 59.323 55.000 0.00 0.00 0.00 4.85
2444 2514 1.604185 CCAGCGAGCCTAGATTACTGC 60.604 57.143 0.00 0.00 0.00 4.40
2445 2515 1.683917 ACCAGCGAGCCTAGATTACTG 59.316 52.381 0.00 0.00 0.00 2.74
2446 2516 2.074729 ACCAGCGAGCCTAGATTACT 57.925 50.000 0.00 0.00 0.00 2.24
2447 2517 2.885894 AGTACCAGCGAGCCTAGATTAC 59.114 50.000 0.00 0.00 0.00 1.89
2448 2518 3.225177 AGTACCAGCGAGCCTAGATTA 57.775 47.619 0.00 0.00 0.00 1.75
2449 2519 2.074729 AGTACCAGCGAGCCTAGATT 57.925 50.000 0.00 0.00 0.00 2.40
2450 2520 2.158652 TGTAGTACCAGCGAGCCTAGAT 60.159 50.000 0.00 0.00 0.00 1.98
2451 2521 1.211212 TGTAGTACCAGCGAGCCTAGA 59.789 52.381 0.00 0.00 0.00 2.43
2452 2522 1.676746 TGTAGTACCAGCGAGCCTAG 58.323 55.000 0.00 0.00 0.00 3.02
2453 2523 1.747355 GTTGTAGTACCAGCGAGCCTA 59.253 52.381 0.00 0.00 0.00 3.93
2454 2524 0.531200 GTTGTAGTACCAGCGAGCCT 59.469 55.000 0.00 0.00 0.00 4.58
2455 2525 0.245539 TGTTGTAGTACCAGCGAGCC 59.754 55.000 0.00 0.00 0.00 4.70
2456 2526 1.347320 GTGTTGTAGTACCAGCGAGC 58.653 55.000 0.00 0.00 0.00 5.03
2457 2527 1.271379 TGGTGTTGTAGTACCAGCGAG 59.729 52.381 0.00 0.00 41.80 5.03
2458 2528 1.330234 TGGTGTTGTAGTACCAGCGA 58.670 50.000 0.00 0.00 41.80 4.93
2459 2529 3.898380 TGGTGTTGTAGTACCAGCG 57.102 52.632 0.00 0.00 41.80 5.18
2462 2532 2.564062 GGTAGCTGGTGTTGTAGTACCA 59.436 50.000 0.00 0.00 44.31 3.25
2463 2533 2.564062 TGGTAGCTGGTGTTGTAGTACC 59.436 50.000 0.00 0.00 37.48 3.34
2464 2534 3.846360 CTGGTAGCTGGTGTTGTAGTAC 58.154 50.000 0.00 0.00 0.00 2.73
2465 2535 2.232941 GCTGGTAGCTGGTGTTGTAGTA 59.767 50.000 0.00 0.00 38.45 1.82
2466 2536 1.002087 GCTGGTAGCTGGTGTTGTAGT 59.998 52.381 0.00 0.00 38.45 2.73
2467 2537 1.001974 TGCTGGTAGCTGGTGTTGTAG 59.998 52.381 0.00 0.00 42.97 2.74
2468 2538 1.052617 TGCTGGTAGCTGGTGTTGTA 58.947 50.000 0.00 0.00 42.97 2.41
2469 2539 0.535102 GTGCTGGTAGCTGGTGTTGT 60.535 55.000 0.00 0.00 42.97 3.32
2470 2540 0.250467 AGTGCTGGTAGCTGGTGTTG 60.250 55.000 0.00 0.00 42.97 3.33
2471 2541 0.474184 AAGTGCTGGTAGCTGGTGTT 59.526 50.000 0.00 0.00 42.97 3.32
2472 2542 0.035458 GAAGTGCTGGTAGCTGGTGT 59.965 55.000 0.00 0.00 42.97 4.16
2473 2543 0.322975 AGAAGTGCTGGTAGCTGGTG 59.677 55.000 0.00 0.00 42.97 4.17
2474 2544 1.059913 AAGAAGTGCTGGTAGCTGGT 58.940 50.000 0.00 0.00 42.97 4.00
2475 2545 1.446907 CAAGAAGTGCTGGTAGCTGG 58.553 55.000 0.00 0.00 42.97 4.85
2476 2546 1.002430 TCCAAGAAGTGCTGGTAGCTG 59.998 52.381 0.00 0.00 42.97 4.24
2477 2547 1.277557 CTCCAAGAAGTGCTGGTAGCT 59.722 52.381 2.24 0.00 42.97 3.32
2478 2548 1.677217 CCTCCAAGAAGTGCTGGTAGC 60.677 57.143 0.00 0.00 42.82 3.58
2479 2549 1.902508 TCCTCCAAGAAGTGCTGGTAG 59.097 52.381 0.00 0.00 0.00 3.18
2480 2550 2.024176 TCCTCCAAGAAGTGCTGGTA 57.976 50.000 0.00 0.00 0.00 3.25
2481 2551 1.140312 TTCCTCCAAGAAGTGCTGGT 58.860 50.000 0.00 0.00 0.00 4.00
2482 2552 2.503895 ATTCCTCCAAGAAGTGCTGG 57.496 50.000 0.00 0.00 0.00 4.85
2483 2553 4.861102 AAAATTCCTCCAAGAAGTGCTG 57.139 40.909 0.00 0.00 0.00 4.41
2484 2554 5.105595 GCATAAAATTCCTCCAAGAAGTGCT 60.106 40.000 0.00 0.00 0.00 4.40
2485 2555 5.105063 GCATAAAATTCCTCCAAGAAGTGC 58.895 41.667 0.00 0.00 0.00 4.40
2486 2556 6.151648 TGAGCATAAAATTCCTCCAAGAAGTG 59.848 38.462 0.00 0.00 0.00 3.16
2487 2557 6.248433 TGAGCATAAAATTCCTCCAAGAAGT 58.752 36.000 0.00 0.00 0.00 3.01
2488 2558 6.764308 TGAGCATAAAATTCCTCCAAGAAG 57.236 37.500 0.00 0.00 0.00 2.85
2489 2559 7.722949 AATGAGCATAAAATTCCTCCAAGAA 57.277 32.000 0.00 0.00 0.00 2.52
2490 2560 7.722949 AAATGAGCATAAAATTCCTCCAAGA 57.277 32.000 0.00 0.00 0.00 3.02
2491 2561 7.279313 CCAAAATGAGCATAAAATTCCTCCAAG 59.721 37.037 0.00 0.00 0.00 3.61
2492 2562 7.104939 CCAAAATGAGCATAAAATTCCTCCAA 58.895 34.615 0.00 0.00 0.00 3.53
2493 2563 6.352051 CCCAAAATGAGCATAAAATTCCTCCA 60.352 38.462 0.00 0.00 0.00 3.86
2494 2564 6.051074 CCCAAAATGAGCATAAAATTCCTCC 58.949 40.000 0.00 0.00 0.00 4.30
2495 2565 6.877236 TCCCAAAATGAGCATAAAATTCCTC 58.123 36.000 0.00 0.00 0.00 3.71
2496 2566 6.872585 TCCCAAAATGAGCATAAAATTCCT 57.127 33.333 0.00 0.00 0.00 3.36
2497 2567 7.920160 TTTCCCAAAATGAGCATAAAATTCC 57.080 32.000 0.00 0.00 0.00 3.01
2498 2568 9.777575 CAATTTCCCAAAATGAGCATAAAATTC 57.222 29.630 0.00 0.00 35.27 2.17
2499 2569 9.299465 ACAATTTCCCAAAATGAGCATAAAATT 57.701 25.926 0.00 0.00 35.27 1.82
2500 2570 8.866970 ACAATTTCCCAAAATGAGCATAAAAT 57.133 26.923 0.00 0.00 35.27 1.82
2501 2571 9.784531 TTACAATTTCCCAAAATGAGCATAAAA 57.215 25.926 0.00 0.00 35.27 1.52
2502 2572 9.956640 ATTACAATTTCCCAAAATGAGCATAAA 57.043 25.926 0.00 0.00 35.27 1.40
2503 2573 9.956640 AATTACAATTTCCCAAAATGAGCATAA 57.043 25.926 0.00 0.00 35.27 1.90
2504 2574 9.381033 CAATTACAATTTCCCAAAATGAGCATA 57.619 29.630 0.00 0.00 35.27 3.14
2505 2575 7.337436 CCAATTACAATTTCCCAAAATGAGCAT 59.663 33.333 0.00 0.00 35.27 3.79
2506 2576 6.654161 CCAATTACAATTTCCCAAAATGAGCA 59.346 34.615 0.00 0.00 35.27 4.26
2507 2577 6.093909 CCCAATTACAATTTCCCAAAATGAGC 59.906 38.462 0.00 0.00 35.27 4.26
2508 2578 6.598850 CCCCAATTACAATTTCCCAAAATGAG 59.401 38.462 0.00 0.00 35.27 2.90
2509 2579 6.479884 CCCCAATTACAATTTCCCAAAATGA 58.520 36.000 0.00 0.00 35.27 2.57
2510 2580 5.651576 CCCCCAATTACAATTTCCCAAAATG 59.348 40.000 0.00 0.00 35.27 2.32
2511 2581 5.314573 ACCCCCAATTACAATTTCCCAAAAT 59.685 36.000 0.00 0.00 36.64 1.82
2512 2582 4.665483 ACCCCCAATTACAATTTCCCAAAA 59.335 37.500 0.00 0.00 0.00 2.44
2513 2583 4.243643 ACCCCCAATTACAATTTCCCAAA 58.756 39.130 0.00 0.00 0.00 3.28
2514 2584 3.875571 ACCCCCAATTACAATTTCCCAA 58.124 40.909 0.00 0.00 0.00 4.12
2515 2585 3.569135 ACCCCCAATTACAATTTCCCA 57.431 42.857 0.00 0.00 0.00 4.37
2516 2586 3.585289 ACAACCCCCAATTACAATTTCCC 59.415 43.478 0.00 0.00 0.00 3.97
2517 2587 4.041075 ACACAACCCCCAATTACAATTTCC 59.959 41.667 0.00 0.00 0.00 3.13
2518 2588 5.222079 ACACAACCCCCAATTACAATTTC 57.778 39.130 0.00 0.00 0.00 2.17
2519 2589 6.943899 ATACACAACCCCCAATTACAATTT 57.056 33.333 0.00 0.00 0.00 1.82
2520 2590 7.621683 ACATATACACAACCCCCAATTACAATT 59.378 33.333 0.00 0.00 0.00 2.32
2521 2591 7.129425 ACATATACACAACCCCCAATTACAAT 58.871 34.615 0.00 0.00 0.00 2.71
2522 2592 6.494952 ACATATACACAACCCCCAATTACAA 58.505 36.000 0.00 0.00 0.00 2.41
2523 2593 6.080969 ACATATACACAACCCCCAATTACA 57.919 37.500 0.00 0.00 0.00 2.41
2524 2594 6.123651 TGACATATACACAACCCCCAATTAC 58.876 40.000 0.00 0.00 0.00 1.89
2525 2595 6.328782 TGACATATACACAACCCCCAATTA 57.671 37.500 0.00 0.00 0.00 1.40
2526 2596 5.199982 TGACATATACACAACCCCCAATT 57.800 39.130 0.00 0.00 0.00 2.32
2527 2597 4.871871 TGACATATACACAACCCCCAAT 57.128 40.909 0.00 0.00 0.00 3.16
2528 2598 4.531854 CATGACATATACACAACCCCCAA 58.468 43.478 0.00 0.00 0.00 4.12
2529 2599 3.686978 GCATGACATATACACAACCCCCA 60.687 47.826 0.00 0.00 0.00 4.96
2530 2600 2.884639 GCATGACATATACACAACCCCC 59.115 50.000 0.00 0.00 0.00 5.40
2531 2601 3.315191 GTGCATGACATATACACAACCCC 59.685 47.826 0.00 0.00 0.00 4.95
2532 2602 4.199310 AGTGCATGACATATACACAACCC 58.801 43.478 14.39 0.00 33.69 4.11
2533 2603 4.875536 TGAGTGCATGACATATACACAACC 59.124 41.667 14.39 6.77 33.69 3.77
2534 2604 6.609237 ATGAGTGCATGACATATACACAAC 57.391 37.500 14.39 9.89 33.69 3.32
2548 2618 3.054582 AGGATTCAGTCACATGAGTGCAT 60.055 43.478 11.22 6.68 45.49 3.96
2549 2619 2.303890 AGGATTCAGTCACATGAGTGCA 59.696 45.455 11.22 1.93 45.49 4.57
2550 2620 2.983229 AGGATTCAGTCACATGAGTGC 58.017 47.619 11.22 0.00 45.49 4.40
2552 2622 4.321718 CACAAGGATTCAGTCACATGAGT 58.678 43.478 0.00 0.00 0.00 3.41
2553 2623 3.126514 GCACAAGGATTCAGTCACATGAG 59.873 47.826 0.00 0.00 0.00 2.90
2554 2624 3.076621 GCACAAGGATTCAGTCACATGA 58.923 45.455 0.00 0.00 0.00 3.07
2555 2625 2.815503 TGCACAAGGATTCAGTCACATG 59.184 45.455 0.00 0.00 0.00 3.21
2556 2626 3.144657 TGCACAAGGATTCAGTCACAT 57.855 42.857 0.00 0.00 0.00 3.21
2557 2627 2.636647 TGCACAAGGATTCAGTCACA 57.363 45.000 0.00 0.00 0.00 3.58
2558 2628 4.510038 AAATGCACAAGGATTCAGTCAC 57.490 40.909 0.00 0.00 34.42 3.67
2559 2629 5.068855 TCAAAAATGCACAAGGATTCAGTCA 59.931 36.000 0.00 0.00 34.42 3.41
2560 2630 5.531634 TCAAAAATGCACAAGGATTCAGTC 58.468 37.500 0.00 0.00 34.42 3.51
2561 2631 5.534207 TCAAAAATGCACAAGGATTCAGT 57.466 34.783 0.00 0.00 34.42 3.41
2562 2632 7.063780 GGTTATCAAAAATGCACAAGGATTCAG 59.936 37.037 0.00 0.00 34.42 3.02
2563 2633 6.873076 GGTTATCAAAAATGCACAAGGATTCA 59.127 34.615 0.00 0.00 34.42 2.57
2564 2634 7.099120 AGGTTATCAAAAATGCACAAGGATTC 58.901 34.615 0.00 0.00 34.42 2.52
2565 2635 7.008021 AGGTTATCAAAAATGCACAAGGATT 57.992 32.000 0.00 0.00 37.39 3.01
2566 2636 6.610075 AGGTTATCAAAAATGCACAAGGAT 57.390 33.333 0.00 0.00 0.00 3.24
2567 2637 6.418057 AAGGTTATCAAAAATGCACAAGGA 57.582 33.333 0.00 0.00 0.00 3.36
2568 2638 7.226325 TGAAAAGGTTATCAAAAATGCACAAGG 59.774 33.333 0.00 0.00 0.00 3.61
2569 2639 8.140677 TGAAAAGGTTATCAAAAATGCACAAG 57.859 30.769 0.00 0.00 0.00 3.16
2570 2640 8.674263 ATGAAAAGGTTATCAAAAATGCACAA 57.326 26.923 0.00 0.00 0.00 3.33
2571 2641 8.674263 AATGAAAAGGTTATCAAAAATGCACA 57.326 26.923 0.00 0.00 0.00 4.57
2572 2642 9.384682 CAAATGAAAAGGTTATCAAAAATGCAC 57.615 29.630 0.00 0.00 0.00 4.57
2573 2643 8.074972 GCAAATGAAAAGGTTATCAAAAATGCA 58.925 29.630 0.00 0.00 0.00 3.96
2574 2644 8.438732 GCAAATGAAAAGGTTATCAAAAATGC 57.561 30.769 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.