Multiple sequence alignment - TraesCS5B01G513800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G513800 chr5B 100.000 3149 0 0 1758 4906 678918120 678914972 0.000000e+00 5816.0
1 TraesCS5B01G513800 chr5B 100.000 1279 0 0 1 1279 678919877 678918599 0.000000e+00 2362.0
2 TraesCS5B01G513800 chr5B 82.897 649 86 18 396 1034 576782247 576781614 1.190000e-155 560.0
3 TraesCS5B01G513800 chr5B 85.249 461 47 14 583 1036 396022571 396022125 5.790000e-124 455.0
4 TraesCS5B01G513800 chr5D 95.905 1807 41 17 3105 4902 537947405 537949187 0.000000e+00 2896.0
5 TraesCS5B01G513800 chr5D 95.371 1145 39 3 1922 3057 537946266 537947405 0.000000e+00 1808.0
6 TraesCS5B01G513800 chr5D 84.066 364 36 13 680 1036 236224068 236224416 1.020000e-86 331.0
7 TraesCS5B01G513800 chr5D 98.077 104 2 0 1075 1178 537946141 537946244 1.080000e-41 182.0
8 TraesCS5B01G513800 chr4A 95.806 1812 39 17 3103 4901 632134130 632135917 0.000000e+00 2891.0
9 TraesCS5B01G513800 chr4B 89.836 974 87 9 71 1037 382783196 382784164 0.000000e+00 1240.0
10 TraesCS5B01G513800 chr4B 98.413 63 1 0 4 66 522299419 522299481 1.440000e-20 111.0
11 TraesCS5B01G513800 chr3D 86.131 685 79 13 356 1037 111979777 111980448 0.000000e+00 725.0
12 TraesCS5B01G513800 chr3D 86.452 310 36 4 100 407 111979560 111979865 7.870000e-88 335.0
13 TraesCS5B01G513800 chr3D 93.333 75 1 4 1 74 604406357 604406286 1.870000e-19 108.0
14 TraesCS5B01G513800 chr3D 78.916 166 16 15 836 996 610557459 610557610 1.450000e-15 95.3
15 TraesCS5B01G513800 chr3D 91.111 45 0 3 1032 1076 111980463 111980503 1.910000e-04 58.4
16 TraesCS5B01G513800 chr6B 83.926 647 61 21 396 1036 202749945 202749336 3.290000e-161 579.0
17 TraesCS5B01G513800 chr6B 90.588 340 27 4 71 408 202750229 202749893 3.480000e-121 446.0
18 TraesCS5B01G513800 chr6B 82.468 462 46 18 583 1036 129860367 129859933 6.000000e-99 372.0
19 TraesCS5B01G513800 chr6B 83.523 176 17 6 857 1031 95498076 95497912 2.360000e-33 154.0
20 TraesCS5B01G513800 chr6B 78.689 183 16 8 913 1076 638499893 638499715 3.120000e-17 100.0
21 TraesCS5B01G513800 chr2B 86.087 460 45 12 582 1036 157151430 157150985 1.240000e-130 477.0
22 TraesCS5B01G513800 chr6D 89.213 343 30 6 71 407 242147838 242147497 5.870000e-114 422.0
23 TraesCS5B01G513800 chr6D 78.667 525 90 17 390 897 429804448 429804967 3.660000e-86 329.0
24 TraesCS5B01G513800 chr6D 86.159 289 33 7 402 686 242147544 242147259 6.170000e-79 305.0
25 TraesCS5B01G513800 chr7D 78.595 598 102 19 390 966 578797656 578798248 6.000000e-99 372.0
26 TraesCS5B01G513800 chr7D 79.953 424 49 19 4495 4887 311865831 311866249 3.740000e-71 279.0
27 TraesCS5B01G513800 chr7D 81.657 338 53 5 74 407 78311659 78311327 6.260000e-69 272.0
28 TraesCS5B01G513800 chr7B 80.825 412 55 16 4495 4887 296351601 296351195 7.980000e-78 302.0
29 TraesCS5B01G513800 chr7B 81.579 76 13 1 653 727 438979469 438979394 1.470000e-05 62.1
30 TraesCS5B01G513800 chr7A 83.025 324 40 10 4492 4811 162522456 162522144 3.740000e-71 279.0
31 TraesCS5B01G513800 chr2D 78.841 345 61 9 68 407 106957478 106957815 6.390000e-54 222.0
32 TraesCS5B01G513800 chr6A 85.385 130 15 4 903 1031 52231416 52231542 1.110000e-26 132.0
33 TraesCS5B01G513800 chr6A 84.375 128 15 5 913 1037 52295107 52295232 2.400000e-23 121.0
34 TraesCS5B01G513800 chrUn 97.059 68 2 0 4 71 49243982 49244049 1.120000e-21 115.0
35 TraesCS5B01G513800 chr3B 98.413 63 1 0 4 66 71969939 71970001 1.440000e-20 111.0
36 TraesCS5B01G513800 chr1B 98.413 63 1 0 4 66 55456944 55457006 1.440000e-20 111.0
37 TraesCS5B01G513800 chr1B 98.413 63 1 0 4 66 450021372 450021434 1.440000e-20 111.0
38 TraesCS5B01G513800 chr3A 94.444 72 1 3 7 77 72900068 72899999 1.870000e-19 108.0
39 TraesCS5B01G513800 chr3A 81.333 75 12 2 691 764 106656908 106656981 5.300000e-05 60.2
40 TraesCS5B01G513800 chr4D 95.588 68 0 3 4 70 23277926 23277991 6.720000e-19 106.0
41 TraesCS5B01G513800 chr1A 94.286 70 1 3 4 72 551741564 551741631 2.420000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G513800 chr5B 678914972 678919877 4905 True 4089.000000 5816 100.000 1 4906 2 chr5B.!!$R3 4905
1 TraesCS5B01G513800 chr5B 576781614 576782247 633 True 560.000000 560 82.897 396 1034 1 chr5B.!!$R2 638
2 TraesCS5B01G513800 chr5D 537946141 537949187 3046 False 1628.666667 2896 96.451 1075 4902 3 chr5D.!!$F2 3827
3 TraesCS5B01G513800 chr4A 632134130 632135917 1787 False 2891.000000 2891 95.806 3103 4901 1 chr4A.!!$F1 1798
4 TraesCS5B01G513800 chr4B 382783196 382784164 968 False 1240.000000 1240 89.836 71 1037 1 chr4B.!!$F1 966
5 TraesCS5B01G513800 chr3D 111979560 111980503 943 False 372.800000 725 87.898 100 1076 3 chr3D.!!$F2 976
6 TraesCS5B01G513800 chr6B 202749336 202750229 893 True 512.500000 579 87.257 71 1036 2 chr6B.!!$R4 965
7 TraesCS5B01G513800 chr6D 242147259 242147838 579 True 363.500000 422 87.686 71 686 2 chr6D.!!$R1 615
8 TraesCS5B01G513800 chr6D 429804448 429804967 519 False 329.000000 329 78.667 390 897 1 chr6D.!!$F1 507
9 TraesCS5B01G513800 chr7D 578797656 578798248 592 False 372.000000 372 78.595 390 966 1 chr7D.!!$F2 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.519961 AAAACAGTATGAACCGGCGC 59.480 50.0 0.00 0.0 39.69 6.53 F
1240 1301 0.035439 ATCTCCGTCGGCCACAAAAT 60.035 50.0 6.34 0.0 0.00 1.82 F
1895 1956 0.027716 CGGACTTCGACGATGACGAT 59.972 55.0 16.71 0.0 42.43 3.73 F
2725 2795 0.034059 ACCTTGACAGTCTGGAAGCG 59.966 55.0 16.70 3.6 0.00 4.68 F
3014 3084 0.107945 GCAGTCCTGACATCCCAGAC 60.108 60.0 0.00 0.0 36.29 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1876 1937 0.027716 ATCGTCATCGTCGAAGTCCG 59.972 55.000 0.00 2.65 40.61 4.79 R
2725 2795 0.027063 CCACACACGGTTCAACGTTC 59.973 55.000 0.00 0.00 46.25 3.95 R
3089 3159 0.028110 GGATCGACGCCATTTGCTTC 59.972 55.000 1.43 0.00 38.05 3.86 R
3743 3813 0.613260 GGAGGTGGACATGCTGTACA 59.387 55.000 0.00 0.00 39.27 2.90 R
4855 4946 1.534595 CCTTTTGAGTCAGCACTGCTC 59.465 52.381 0.00 12.35 36.40 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.907894 TTGCGGAAAACAGTATGAACC 57.092 42.857 0.00 0.00 39.69 3.62
41 42 1.801771 TGCGGAAAACAGTATGAACCG 59.198 47.619 0.00 0.00 39.69 4.44
42 43 1.129811 GCGGAAAACAGTATGAACCGG 59.870 52.381 0.00 0.00 39.69 5.28
43 44 1.129811 CGGAAAACAGTATGAACCGGC 59.870 52.381 0.00 0.00 39.69 6.13
44 45 1.129811 GGAAAACAGTATGAACCGGCG 59.870 52.381 0.00 0.00 39.69 6.46
45 46 0.519961 AAAACAGTATGAACCGGCGC 59.480 50.000 0.00 0.00 39.69 6.53
46 47 1.303091 AAACAGTATGAACCGGCGCC 61.303 55.000 19.07 19.07 39.69 6.53
47 48 2.180159 AACAGTATGAACCGGCGCCT 62.180 55.000 26.68 5.36 39.69 5.52
48 49 2.173669 CAGTATGAACCGGCGCCTG 61.174 63.158 26.68 21.87 39.69 4.85
49 50 3.573491 GTATGAACCGGCGCCTGC 61.573 66.667 26.68 5.64 41.71 4.85
50 51 4.089239 TATGAACCGGCGCCTGCA 62.089 61.111 26.68 12.51 45.35 4.41
62 63 1.944778 GCCTGCAGCGCTAAATAGG 59.055 57.895 10.99 16.20 0.00 2.57
63 64 0.532862 GCCTGCAGCGCTAAATAGGA 60.533 55.000 24.15 8.76 0.00 2.94
64 65 1.953559 CCTGCAGCGCTAAATAGGAA 58.046 50.000 10.99 0.00 0.00 3.36
65 66 2.288666 CCTGCAGCGCTAAATAGGAAA 58.711 47.619 10.99 0.00 0.00 3.13
66 67 2.880890 CCTGCAGCGCTAAATAGGAAAT 59.119 45.455 10.99 0.00 0.00 2.17
67 68 3.304257 CCTGCAGCGCTAAATAGGAAATG 60.304 47.826 10.99 0.00 0.00 2.32
68 69 2.033299 TGCAGCGCTAAATAGGAAATGC 59.967 45.455 10.99 6.21 0.00 3.56
69 70 2.605580 GCAGCGCTAAATAGGAAATGCC 60.606 50.000 10.99 0.00 0.00 4.40
106 107 2.396601 TGCAACAACTTACTACGTCCG 58.603 47.619 0.00 0.00 0.00 4.79
183 184 3.206150 ACAATGAGCCGCGATAGATTTT 58.794 40.909 8.23 0.00 39.76 1.82
525 540 7.548780 GGCAGGCTGAAACATTAATTGAAATTA 59.451 33.333 20.86 0.00 0.00 1.40
627 653 9.878599 TTTTCAAAACGTGAGCAATTTTAAAAA 57.121 22.222 4.44 0.00 37.61 1.94
786 816 3.570550 TCCCGAATTTCCGAAATTTGTGT 59.429 39.130 23.56 4.43 40.97 3.72
827 857 8.610896 TGCGAACATTTTTCAAATTTCTGAAAT 58.389 25.926 9.76 9.76 43.12 2.17
853 884 6.234723 TGTTGAAAAAGAAAACAAACAGGC 57.765 33.333 0.00 0.00 31.16 4.85
884 919 9.226606 AGAAAAGGGAAAAACGAAAAAGAAAAT 57.773 25.926 0.00 0.00 0.00 1.82
955 994 2.728397 GGAAGGTTCCCAAAACGCT 58.272 52.632 0.00 0.00 41.62 5.07
966 1005 3.892588 TCCCAAAACGCTTAAAACCAGAT 59.107 39.130 0.00 0.00 0.00 2.90
971 1010 7.312899 CCAAAACGCTTAAAACCAGATAGAAT 58.687 34.615 0.00 0.00 0.00 2.40
1015 1054 0.107081 TCACGTATAATTGGGCCGGG 59.893 55.000 2.18 0.00 0.00 5.73
1151 1212 3.092511 ATCCGTGCCAGCCCATCT 61.093 61.111 0.00 0.00 0.00 2.90
1180 1241 3.545911 GGTACCACACGCGTCTTG 58.454 61.111 9.86 9.90 0.00 3.02
1182 1243 2.356553 TACCACACGCGTCTTGCC 60.357 61.111 9.86 0.00 42.08 4.52
1183 1244 2.863346 TACCACACGCGTCTTGCCT 61.863 57.895 9.86 0.00 42.08 4.75
1184 1245 2.758770 TACCACACGCGTCTTGCCTC 62.759 60.000 9.86 0.00 42.08 4.70
1185 1246 2.661537 CACACGCGTCTTGCCTCA 60.662 61.111 9.86 0.00 42.08 3.86
1186 1247 2.029288 CACACGCGTCTTGCCTCAT 61.029 57.895 9.86 0.00 42.08 2.90
1187 1248 1.738099 ACACGCGTCTTGCCTCATC 60.738 57.895 9.86 0.00 42.08 2.92
1188 1249 1.737735 CACGCGTCTTGCCTCATCA 60.738 57.895 9.86 0.00 42.08 3.07
1189 1250 1.005037 ACGCGTCTTGCCTCATCAA 60.005 52.632 5.58 0.00 42.08 2.57
1190 1251 0.602638 ACGCGTCTTGCCTCATCAAA 60.603 50.000 5.58 0.00 42.08 2.69
1191 1252 0.516877 CGCGTCTTGCCTCATCAAAA 59.483 50.000 0.00 0.00 42.08 2.44
1192 1253 1.069296 CGCGTCTTGCCTCATCAAAAA 60.069 47.619 0.00 0.00 42.08 1.94
1193 1254 2.589014 GCGTCTTGCCTCATCAAAAAG 58.411 47.619 0.00 0.00 37.76 2.27
1194 1255 2.669391 GCGTCTTGCCTCATCAAAAAGG 60.669 50.000 0.00 0.00 37.76 3.11
1195 1256 2.813754 CGTCTTGCCTCATCAAAAAGGA 59.186 45.455 0.00 0.00 34.35 3.36
1196 1257 3.253188 CGTCTTGCCTCATCAAAAAGGAA 59.747 43.478 0.00 0.00 34.35 3.36
1197 1258 4.261572 CGTCTTGCCTCATCAAAAAGGAAA 60.262 41.667 0.00 0.00 34.35 3.13
1198 1259 5.600696 GTCTTGCCTCATCAAAAAGGAAAA 58.399 37.500 0.00 0.00 34.35 2.29
1199 1260 6.048509 GTCTTGCCTCATCAAAAAGGAAAAA 58.951 36.000 0.00 0.00 34.35 1.94
1221 1282 4.678499 TGCCGATGTGCAGCACGA 62.678 61.111 20.67 10.29 37.14 4.35
1222 1283 3.197790 GCCGATGTGCAGCACGAT 61.198 61.111 20.67 14.48 37.14 3.73
1223 1284 3.009140 CCGATGTGCAGCACGATC 58.991 61.111 20.67 20.20 37.14 3.69
1224 1285 1.520120 CCGATGTGCAGCACGATCT 60.520 57.895 20.67 5.29 37.14 2.75
1225 1286 1.485838 CCGATGTGCAGCACGATCTC 61.486 60.000 20.67 12.82 37.14 2.75
1226 1287 1.485838 CGATGTGCAGCACGATCTCC 61.486 60.000 20.67 5.05 37.14 3.71
1227 1288 1.485838 GATGTGCAGCACGATCTCCG 61.486 60.000 20.67 0.00 45.44 4.63
1236 1297 3.822192 CGATCTCCGTCGGCCACA 61.822 66.667 6.34 0.00 37.94 4.17
1237 1298 2.577059 GATCTCCGTCGGCCACAA 59.423 61.111 6.34 0.00 0.00 3.33
1238 1299 1.079405 GATCTCCGTCGGCCACAAA 60.079 57.895 6.34 0.00 0.00 2.83
1239 1300 0.672401 GATCTCCGTCGGCCACAAAA 60.672 55.000 6.34 0.00 0.00 2.44
1240 1301 0.035439 ATCTCCGTCGGCCACAAAAT 60.035 50.000 6.34 0.00 0.00 1.82
1241 1302 0.250553 TCTCCGTCGGCCACAAAATT 60.251 50.000 6.34 0.00 0.00 1.82
1242 1303 0.168128 CTCCGTCGGCCACAAAATTC 59.832 55.000 6.34 0.00 0.00 2.17
1243 1304 1.211709 CCGTCGGCCACAAAATTCC 59.788 57.895 2.24 0.00 0.00 3.01
1244 1305 1.211709 CGTCGGCCACAAAATTCCC 59.788 57.895 2.24 0.00 0.00 3.97
1245 1306 1.589630 GTCGGCCACAAAATTCCCC 59.410 57.895 2.24 0.00 0.00 4.81
1246 1307 1.153989 TCGGCCACAAAATTCCCCA 59.846 52.632 2.24 0.00 0.00 4.96
1247 1308 0.252012 TCGGCCACAAAATTCCCCAT 60.252 50.000 2.24 0.00 0.00 4.00
1248 1309 0.175531 CGGCCACAAAATTCCCCATC 59.824 55.000 2.24 0.00 0.00 3.51
1249 1310 0.175531 GGCCACAAAATTCCCCATCG 59.824 55.000 0.00 0.00 0.00 3.84
1250 1311 0.175531 GCCACAAAATTCCCCATCGG 59.824 55.000 0.00 0.00 0.00 4.18
1251 1312 1.555967 CCACAAAATTCCCCATCGGT 58.444 50.000 0.00 0.00 0.00 4.69
1252 1313 1.476488 CCACAAAATTCCCCATCGGTC 59.524 52.381 0.00 0.00 0.00 4.79
1253 1314 2.166829 CACAAAATTCCCCATCGGTCA 58.833 47.619 0.00 0.00 0.00 4.02
1254 1315 2.760092 CACAAAATTCCCCATCGGTCAT 59.240 45.455 0.00 0.00 0.00 3.06
1255 1316 3.023832 ACAAAATTCCCCATCGGTCATC 58.976 45.455 0.00 0.00 0.00 2.92
1256 1317 2.362077 CAAAATTCCCCATCGGTCATCC 59.638 50.000 0.00 0.00 0.00 3.51
1257 1318 1.221635 AATTCCCCATCGGTCATCCA 58.778 50.000 0.00 0.00 0.00 3.41
1258 1319 1.449271 ATTCCCCATCGGTCATCCAT 58.551 50.000 0.00 0.00 0.00 3.41
1259 1320 2.110753 TTCCCCATCGGTCATCCATA 57.889 50.000 0.00 0.00 0.00 2.74
1260 1321 1.644509 TCCCCATCGGTCATCCATAG 58.355 55.000 0.00 0.00 0.00 2.23
1261 1322 0.615331 CCCCATCGGTCATCCATAGG 59.385 60.000 0.00 0.00 0.00 2.57
1262 1323 1.644509 CCCATCGGTCATCCATAGGA 58.355 55.000 0.00 0.00 35.55 2.94
1263 1324 1.977854 CCCATCGGTCATCCATAGGAA 59.022 52.381 0.00 0.00 34.34 3.36
1264 1325 2.371841 CCCATCGGTCATCCATAGGAAA 59.628 50.000 0.00 0.00 34.34 3.13
1265 1326 3.181445 CCCATCGGTCATCCATAGGAAAA 60.181 47.826 0.00 0.00 34.34 2.29
1266 1327 3.815401 CCATCGGTCATCCATAGGAAAAC 59.185 47.826 0.00 0.00 34.34 2.43
1267 1328 3.553828 TCGGTCATCCATAGGAAAACC 57.446 47.619 9.13 9.13 37.15 3.27
1268 1329 3.112263 TCGGTCATCCATAGGAAAACCT 58.888 45.455 14.50 0.00 37.86 3.50
1269 1330 4.291792 TCGGTCATCCATAGGAAAACCTA 58.708 43.478 14.50 0.00 37.86 3.08
1270 1331 4.344102 TCGGTCATCCATAGGAAAACCTAG 59.656 45.833 14.50 4.67 37.86 3.02
1271 1332 4.390264 GGTCATCCATAGGAAAACCTAGC 58.610 47.826 11.07 0.00 37.37 3.42
1272 1333 4.390264 GTCATCCATAGGAAAACCTAGCC 58.610 47.826 0.00 0.00 34.34 3.93
1273 1334 3.071023 TCATCCATAGGAAAACCTAGCCG 59.929 47.826 0.00 0.00 34.34 5.52
1274 1335 1.140252 TCCATAGGAAAACCTAGCCGC 59.860 52.381 0.00 0.00 0.00 6.53
1275 1336 1.594331 CATAGGAAAACCTAGCCGCC 58.406 55.000 0.00 0.00 0.00 6.13
1276 1337 0.472898 ATAGGAAAACCTAGCCGCCC 59.527 55.000 0.00 0.00 0.00 6.13
1277 1338 1.629181 TAGGAAAACCTAGCCGCCCC 61.629 60.000 0.00 0.00 0.00 5.80
1278 1339 2.439701 GAAAACCTAGCCGCCCCC 60.440 66.667 0.00 0.00 0.00 5.40
1779 1840 4.568072 TCTACTGCCATAACAACCATGT 57.432 40.909 0.00 0.00 43.14 3.21
1780 1841 4.513442 TCTACTGCCATAACAACCATGTC 58.487 43.478 0.00 0.00 39.40 3.06
1781 1842 2.083774 ACTGCCATAACAACCATGTCG 58.916 47.619 0.00 0.00 39.40 4.35
1782 1843 1.401552 CTGCCATAACAACCATGTCGG 59.598 52.381 0.00 0.00 39.40 4.79
1783 1844 0.738389 GCCATAACAACCATGTCGGG 59.262 55.000 0.00 0.00 39.40 5.14
1784 1845 1.953311 GCCATAACAACCATGTCGGGT 60.953 52.381 0.00 0.00 45.04 5.28
1789 1850 4.319133 AACCATGTCGGGTGATGC 57.681 55.556 0.00 0.00 41.32 3.91
1790 1851 1.378514 AACCATGTCGGGTGATGCC 60.379 57.895 0.00 0.00 41.32 4.40
1791 1852 2.896854 CCATGTCGGGTGATGCCG 60.897 66.667 0.00 0.00 38.44 5.69
1792 1853 2.896854 CATGTCGGGTGATGCCGG 60.897 66.667 0.00 0.00 38.44 6.13
1793 1854 4.856801 ATGTCGGGTGATGCCGGC 62.857 66.667 22.73 22.73 38.44 6.13
1826 1887 4.508128 GGCCGCCTCGACGATGAA 62.508 66.667 0.71 0.00 34.06 2.57
1827 1888 2.956964 GCCGCCTCGACGATGAAG 60.957 66.667 4.18 0.00 34.06 3.02
1828 1889 2.798689 CCGCCTCGACGATGAAGA 59.201 61.111 4.18 0.00 34.06 2.87
1829 1890 1.360551 CCGCCTCGACGATGAAGAT 59.639 57.895 4.18 0.00 34.06 2.40
1830 1891 0.936764 CCGCCTCGACGATGAAGATG 60.937 60.000 4.18 0.00 34.06 2.90
1831 1892 0.936764 CGCCTCGACGATGAAGATGG 60.937 60.000 4.18 0.00 34.06 3.51
1832 1893 0.103208 GCCTCGACGATGAAGATGGT 59.897 55.000 4.18 0.00 0.00 3.55
1833 1894 1.845266 CCTCGACGATGAAGATGGTG 58.155 55.000 0.00 0.00 0.00 4.17
1834 1895 1.203928 CTCGACGATGAAGATGGTGC 58.796 55.000 0.00 0.00 0.00 5.01
1835 1896 0.179111 TCGACGATGAAGATGGTGCC 60.179 55.000 0.00 0.00 0.00 5.01
1836 1897 0.460109 CGACGATGAAGATGGTGCCA 60.460 55.000 0.00 0.00 0.00 4.92
1837 1898 1.293924 GACGATGAAGATGGTGCCAG 58.706 55.000 0.00 0.00 0.00 4.85
1838 1899 0.904649 ACGATGAAGATGGTGCCAGA 59.095 50.000 0.00 0.00 0.00 3.86
1839 1900 1.487976 ACGATGAAGATGGTGCCAGAT 59.512 47.619 0.00 0.00 0.00 2.90
1840 1901 2.092753 ACGATGAAGATGGTGCCAGATT 60.093 45.455 0.00 0.00 0.00 2.40
1841 1902 2.289820 CGATGAAGATGGTGCCAGATTG 59.710 50.000 0.00 0.00 0.00 2.67
1842 1903 1.466856 TGAAGATGGTGCCAGATTGC 58.533 50.000 0.00 0.00 0.00 3.56
1843 1904 0.743097 GAAGATGGTGCCAGATTGCC 59.257 55.000 0.00 0.00 0.00 4.52
1844 1905 1.033746 AAGATGGTGCCAGATTGCCG 61.034 55.000 0.00 0.00 0.00 5.69
1845 1906 3.129913 GATGGTGCCAGATTGCCGC 62.130 63.158 0.00 0.00 0.00 6.53
1851 1912 4.473520 CCAGATTGCCGCCCGAGT 62.474 66.667 0.00 0.00 0.00 4.18
1852 1913 3.197790 CAGATTGCCGCCCGAGTG 61.198 66.667 0.00 0.00 0.00 3.51
1853 1914 3.706373 AGATTGCCGCCCGAGTGT 61.706 61.111 0.00 0.00 0.00 3.55
1854 1915 3.195698 GATTGCCGCCCGAGTGTC 61.196 66.667 0.00 0.00 0.00 3.67
1855 1916 3.665675 GATTGCCGCCCGAGTGTCT 62.666 63.158 0.00 0.00 0.00 3.41
1856 1917 3.958147 ATTGCCGCCCGAGTGTCTG 62.958 63.158 0.00 0.00 0.00 3.51
1861 1922 3.695606 GCCCGAGTGTCTGCTGGA 61.696 66.667 0.00 0.00 0.00 3.86
1862 1923 2.262915 CCCGAGTGTCTGCTGGAC 59.737 66.667 3.96 3.96 44.70 4.02
1863 1924 2.262915 CCGAGTGTCTGCTGGACC 59.737 66.667 7.67 0.00 43.89 4.46
1864 1925 2.126307 CGAGTGTCTGCTGGACCG 60.126 66.667 7.67 2.04 43.89 4.79
1865 1926 2.262915 GAGTGTCTGCTGGACCGG 59.737 66.667 0.00 0.00 43.89 5.28
1866 1927 3.941657 GAGTGTCTGCTGGACCGGC 62.942 68.421 19.11 19.11 43.89 6.13
1885 1946 2.427905 CGTTCGCACGGACTTCGA 60.428 61.111 0.00 0.00 43.16 3.71
1886 1947 2.704193 CGTTCGCACGGACTTCGAC 61.704 63.158 0.00 0.00 43.16 4.20
1887 1948 2.427905 TTCGCACGGACTTCGACG 60.428 61.111 0.00 0.00 42.43 5.12
1888 1949 2.895682 TTCGCACGGACTTCGACGA 61.896 57.895 0.00 0.00 44.15 4.20
1889 1950 2.191354 TTCGCACGGACTTCGACGAT 62.191 55.000 0.00 0.00 44.73 3.73
1890 1951 2.497092 CGCACGGACTTCGACGATG 61.497 63.158 9.03 9.03 41.62 3.84
1891 1952 1.154093 GCACGGACTTCGACGATGA 60.154 57.895 16.71 0.00 42.43 2.92
1892 1953 1.403972 GCACGGACTTCGACGATGAC 61.404 60.000 16.71 10.62 42.43 3.06
1893 1954 1.126421 CACGGACTTCGACGATGACG 61.126 60.000 16.71 19.34 42.43 4.35
1894 1955 1.293963 ACGGACTTCGACGATGACGA 61.294 55.000 25.72 3.50 42.43 4.20
1895 1956 0.027716 CGGACTTCGACGATGACGAT 59.972 55.000 16.71 0.00 42.43 3.73
1896 1957 1.744374 GGACTTCGACGATGACGATC 58.256 55.000 16.71 4.50 42.66 3.69
1897 1958 1.063616 GGACTTCGACGATGACGATCA 59.936 52.381 16.71 0.00 42.66 2.92
1898 1959 2.367772 GACTTCGACGATGACGATCAG 58.632 52.381 16.71 2.79 42.66 2.90
1899 1960 1.116436 CTTCGACGATGACGATCAGC 58.884 55.000 4.82 0.00 42.66 4.26
1900 1961 0.450184 TTCGACGATGACGATCAGCA 59.550 50.000 0.00 0.00 42.66 4.41
1901 1962 0.450184 TCGACGATGACGATCAGCAA 59.550 50.000 0.00 0.00 42.66 3.91
1902 1963 0.842613 CGACGATGACGATCAGCAAG 59.157 55.000 0.00 0.00 42.66 4.01
1903 1964 1.531883 CGACGATGACGATCAGCAAGA 60.532 52.381 0.00 0.00 42.66 3.02
1904 1965 1.849219 GACGATGACGATCAGCAAGAC 59.151 52.381 0.00 0.00 42.66 3.01
1905 1966 1.203928 CGATGACGATCAGCAAGACC 58.796 55.000 0.00 0.00 42.66 3.85
1906 1967 1.202348 CGATGACGATCAGCAAGACCT 60.202 52.381 0.00 0.00 42.66 3.85
1907 1968 2.468831 GATGACGATCAGCAAGACCTC 58.531 52.381 0.00 0.00 32.15 3.85
1908 1969 1.256812 TGACGATCAGCAAGACCTCA 58.743 50.000 0.00 0.00 0.00 3.86
1909 1970 1.827344 TGACGATCAGCAAGACCTCAT 59.173 47.619 0.00 0.00 0.00 2.90
1910 1971 2.159184 TGACGATCAGCAAGACCTCATC 60.159 50.000 0.00 0.00 0.00 2.92
1911 1972 1.202348 ACGATCAGCAAGACCTCATCG 60.202 52.381 0.00 0.00 39.20 3.84
1912 1973 1.216122 GATCAGCAAGACCTCATCGC 58.784 55.000 0.00 0.00 0.00 4.58
1913 1974 0.179062 ATCAGCAAGACCTCATCGCC 60.179 55.000 0.00 0.00 0.00 5.54
1914 1975 1.220206 CAGCAAGACCTCATCGCCT 59.780 57.895 0.00 0.00 0.00 5.52
1915 1976 0.392193 CAGCAAGACCTCATCGCCTT 60.392 55.000 0.00 0.00 0.00 4.35
1916 1977 0.392193 AGCAAGACCTCATCGCCTTG 60.392 55.000 0.00 0.00 39.06 3.61
1917 1978 2.093216 CAAGACCTCATCGCCTTGC 58.907 57.895 0.00 0.00 31.11 4.01
1918 1979 0.674581 CAAGACCTCATCGCCTTGCA 60.675 55.000 0.00 0.00 31.11 4.08
1919 1980 0.036732 AAGACCTCATCGCCTTGCAA 59.963 50.000 0.00 0.00 0.00 4.08
1920 1981 0.674895 AGACCTCATCGCCTTGCAAC 60.675 55.000 0.00 0.00 0.00 4.17
1944 2005 4.763793 CCTTCAAAATCCTGAGATGTGTGT 59.236 41.667 0.00 0.00 31.29 3.72
1967 2028 1.529713 GAAGGCGTTGGGGTTTCCA 60.530 57.895 0.00 0.00 45.43 3.53
1973 2034 1.024579 CGTTGGGGTTTCCATCCGAG 61.025 60.000 0.00 0.00 46.52 4.63
2102 2163 0.796312 CCAACATCGAAACCGTCCAG 59.204 55.000 0.00 0.00 0.00 3.86
2104 2165 0.682852 AACATCGAAACCGTCCAGGA 59.317 50.000 0.00 0.00 45.00 3.86
2144 2205 3.834231 CCACCACTTTCCTCCATGATTTT 59.166 43.478 0.00 0.00 0.00 1.82
2171 2232 7.355101 ACTACACCTTCTATCTGGTCTATGAA 58.645 38.462 0.00 0.00 33.75 2.57
2175 2236 4.837860 CCTTCTATCTGGTCTATGAAGCCT 59.162 45.833 0.00 0.00 32.21 4.58
2211 2272 2.076207 CATGATCCCCATGCCAGAAA 57.924 50.000 0.00 0.00 45.25 2.52
2212 2273 2.390696 CATGATCCCCATGCCAGAAAA 58.609 47.619 0.00 0.00 45.25 2.29
2213 2274 2.852714 TGATCCCCATGCCAGAAAAT 57.147 45.000 0.00 0.00 0.00 1.82
2214 2275 2.669781 TGATCCCCATGCCAGAAAATC 58.330 47.619 0.00 0.00 0.00 2.17
2215 2276 1.966354 GATCCCCATGCCAGAAAATCC 59.034 52.381 0.00 0.00 0.00 3.01
2216 2277 1.009997 TCCCCATGCCAGAAAATCCT 58.990 50.000 0.00 0.00 0.00 3.24
2217 2278 1.362237 TCCCCATGCCAGAAAATCCTT 59.638 47.619 0.00 0.00 0.00 3.36
2218 2279 1.483415 CCCCATGCCAGAAAATCCTTG 59.517 52.381 0.00 0.00 0.00 3.61
2219 2280 2.181975 CCCATGCCAGAAAATCCTTGT 58.818 47.619 0.00 0.00 0.00 3.16
2266 2327 0.105593 ATGCTCATCGCGAGGTCATT 59.894 50.000 21.22 2.01 42.55 2.57
2269 2330 1.001268 GCTCATCGCGAGGTCATTCTA 60.001 52.381 21.22 0.00 42.55 2.10
2272 2333 2.120232 CATCGCGAGGTCATTCTACAC 58.880 52.381 16.66 0.00 0.00 2.90
2277 2338 1.799181 CGAGGTCATTCTACACTGCCG 60.799 57.143 0.00 0.00 0.00 5.69
2336 2402 1.677633 GGGGGATGTTCCGTTGGTG 60.678 63.158 0.00 0.00 37.43 4.17
2346 2412 1.525995 CCGTTGGTGTGGCTGTCTT 60.526 57.895 0.00 0.00 0.00 3.01
2354 2420 0.247460 TGTGGCTGTCTTCATCCTCG 59.753 55.000 0.00 0.00 31.78 4.63
2385 2451 2.285827 GTCTGAGATCAAGACCACCG 57.714 55.000 14.61 0.00 0.00 4.94
2420 2486 2.488528 CCCCTCATTGATGCTGCACTAT 60.489 50.000 3.57 0.00 0.00 2.12
2540 2606 0.240145 GCAAGGAACCCACGCTTAAC 59.760 55.000 0.00 0.00 0.00 2.01
2593 2663 1.875813 GAGCAGATCACTGTCGCGG 60.876 63.158 6.13 0.00 45.04 6.46
2647 2717 1.227263 CCATAGGCGTCGTCCAAGG 60.227 63.158 8.15 0.00 0.00 3.61
2651 2721 0.037975 TAGGCGTCGTCCAAGGTTTC 60.038 55.000 8.15 0.00 0.00 2.78
2656 2726 1.726791 CGTCGTCCAAGGTTTCATCAG 59.273 52.381 0.00 0.00 0.00 2.90
2725 2795 0.034059 ACCTTGACAGTCTGGAAGCG 59.966 55.000 16.70 3.60 0.00 4.68
2740 2810 1.085501 AAGCGAACGTTGAACCGTGT 61.086 50.000 5.00 0.00 41.65 4.49
2750 2820 1.355210 GAACCGTGTGTGGCAGTTG 59.645 57.895 0.00 0.00 0.00 3.16
2772 2842 3.004171 GAGTACAAGCTCAGTCTCGAGA 58.996 50.000 12.08 12.08 34.79 4.04
2932 3002 5.573380 ATCCCAATATGTGCACACTATCT 57.427 39.130 24.37 8.59 0.00 1.98
2978 3048 2.437281 CACAGTCCAGGCTTCCATATCT 59.563 50.000 0.00 0.00 0.00 1.98
3014 3084 0.107945 GCAGTCCTGACATCCCAGAC 60.108 60.000 0.00 0.00 36.29 3.51
3021 3091 2.224867 CCTGACATCCCAGACCTTGTTT 60.225 50.000 0.00 0.00 36.29 2.83
3061 3131 2.271821 CCATGTCGTGGGGCATGA 59.728 61.111 10.03 0.00 44.79 3.07
3062 3132 1.152902 CCATGTCGTGGGGCATGAT 60.153 57.895 10.03 0.00 44.79 2.45
3063 3133 1.168407 CCATGTCGTGGGGCATGATC 61.168 60.000 10.03 0.00 44.79 2.92
3064 3134 0.179037 CATGTCGTGGGGCATGATCT 60.179 55.000 2.65 0.00 43.60 2.75
3065 3135 1.070601 CATGTCGTGGGGCATGATCTA 59.929 52.381 2.65 0.00 43.60 1.98
3066 3136 0.464036 TGTCGTGGGGCATGATCTAC 59.536 55.000 0.00 0.00 31.77 2.59
3067 3137 0.464036 GTCGTGGGGCATGATCTACA 59.536 55.000 0.00 0.00 31.77 2.74
3068 3138 0.464036 TCGTGGGGCATGATCTACAC 59.536 55.000 0.00 0.00 0.00 2.90
3069 3139 0.177836 CGTGGGGCATGATCTACACA 59.822 55.000 0.00 0.00 0.00 3.72
3070 3140 1.202687 CGTGGGGCATGATCTACACAT 60.203 52.381 0.00 0.00 0.00 3.21
3071 3141 2.746142 CGTGGGGCATGATCTACACATT 60.746 50.000 0.00 0.00 0.00 2.71
3072 3142 3.494223 CGTGGGGCATGATCTACACATTA 60.494 47.826 0.00 0.00 0.00 1.90
3073 3143 4.655963 GTGGGGCATGATCTACACATTAT 58.344 43.478 0.00 0.00 0.00 1.28
3074 3144 4.456911 GTGGGGCATGATCTACACATTATG 59.543 45.833 0.00 0.00 0.00 1.90
3075 3145 4.350520 TGGGGCATGATCTACACATTATGA 59.649 41.667 0.00 0.00 0.00 2.15
3076 3146 5.014438 TGGGGCATGATCTACACATTATGAT 59.986 40.000 0.00 0.00 0.00 2.45
3077 3147 5.356190 GGGGCATGATCTACACATTATGATG 59.644 44.000 0.00 0.00 39.25 3.07
3078 3148 6.175471 GGGCATGATCTACACATTATGATGA 58.825 40.000 4.20 0.00 36.73 2.92
3079 3149 6.827251 GGGCATGATCTACACATTATGATGAT 59.173 38.462 4.20 0.00 36.73 2.45
3080 3150 7.201705 GGGCATGATCTACACATTATGATGATG 60.202 40.741 4.20 0.00 36.73 3.07
3081 3151 7.201705 GGCATGATCTACACATTATGATGATGG 60.202 40.741 4.20 0.00 36.73 3.51
3082 3152 7.551617 GCATGATCTACACATTATGATGATGGA 59.448 37.037 4.20 0.38 36.73 3.41
3083 3153 8.880750 CATGATCTACACATTATGATGATGGAC 58.119 37.037 4.20 0.00 36.73 4.02
3084 3154 7.965718 TGATCTACACATTATGATGATGGACA 58.034 34.615 4.20 0.00 36.73 4.02
3085 3155 7.874528 TGATCTACACATTATGATGATGGACAC 59.125 37.037 4.20 0.24 36.73 3.67
3086 3156 6.215845 TCTACACATTATGATGATGGACACG 58.784 40.000 4.20 0.00 36.73 4.49
3087 3157 5.022282 ACACATTATGATGATGGACACGA 57.978 39.130 4.20 0.00 36.73 4.35
3088 3158 5.614308 ACACATTATGATGATGGACACGAT 58.386 37.500 4.20 0.00 36.73 3.73
3089 3159 5.467735 ACACATTATGATGATGGACACGATG 59.532 40.000 4.20 0.00 36.73 3.84
3090 3160 5.697633 CACATTATGATGATGGACACGATGA 59.302 40.000 4.20 0.00 36.73 2.92
3091 3161 6.203338 CACATTATGATGATGGACACGATGAA 59.797 38.462 4.20 0.00 36.73 2.57
3092 3162 6.426025 ACATTATGATGATGGACACGATGAAG 59.574 38.462 4.20 0.00 36.73 3.02
3093 3163 2.554142 TGATGATGGACACGATGAAGC 58.446 47.619 0.00 0.00 0.00 3.86
3094 3164 2.093553 TGATGATGGACACGATGAAGCA 60.094 45.455 0.00 0.00 0.00 3.91
3095 3165 2.470983 TGATGGACACGATGAAGCAA 57.529 45.000 0.00 0.00 0.00 3.91
3096 3166 2.777094 TGATGGACACGATGAAGCAAA 58.223 42.857 0.00 0.00 0.00 3.68
3097 3167 3.346315 TGATGGACACGATGAAGCAAAT 58.654 40.909 0.00 0.00 0.00 2.32
3098 3168 3.127376 TGATGGACACGATGAAGCAAATG 59.873 43.478 0.00 0.00 0.00 2.32
3099 3169 1.811965 TGGACACGATGAAGCAAATGG 59.188 47.619 0.00 0.00 0.00 3.16
3100 3170 1.468054 GGACACGATGAAGCAAATGGC 60.468 52.381 0.00 0.00 45.30 4.40
3135 3205 4.229353 TGGACCCCATTGACTATGATGAAA 59.771 41.667 0.00 0.00 36.26 2.69
3330 3400 7.436118 AGTGCTCAACATTATTTTTGTCACAT 58.564 30.769 0.00 0.00 33.68 3.21
3475 3545 7.546667 TGCATTCCAATTCTTTCTGATTTAAGC 59.453 33.333 0.00 0.00 0.00 3.09
3479 3549 7.177878 TCCAATTCTTTCTGATTTAAGCCTCT 58.822 34.615 0.00 0.00 0.00 3.69
3492 3562 7.616935 TGATTTAAGCCTCTGAGATTCCAAAAT 59.383 33.333 6.17 4.67 0.00 1.82
3496 3566 6.814954 AGCCTCTGAGATTCCAAAATACTA 57.185 37.500 6.17 0.00 0.00 1.82
3627 3697 0.895100 TTGCAGGTGGGATGACTTGC 60.895 55.000 0.00 0.00 46.33 4.01
3677 3747 2.349755 GGACTAAACGGGCTGCCA 59.650 61.111 22.05 0.00 0.00 4.92
3709 3779 2.045340 GGTTGCCGCATACCCACT 60.045 61.111 11.55 0.00 0.00 4.00
3732 3802 6.043327 TGACTACACGAAAGAACAATTGTG 57.957 37.500 12.82 0.47 0.00 3.33
3743 3813 4.666512 AGAACAATTGTGGGCTAGTGATT 58.333 39.130 12.82 0.00 0.00 2.57
3852 3926 4.574674 TTATTTGAGGACAGAGCATGGT 57.425 40.909 0.00 0.00 0.00 3.55
3932 4006 2.925724 ACGTTTGTGTTCATTCCAGGA 58.074 42.857 0.00 0.00 0.00 3.86
3941 4015 7.156876 TGTGTTCATTCCAGGATAATTTCAC 57.843 36.000 0.00 0.00 0.00 3.18
3948 4022 4.599041 TCCAGGATAATTTCACCAAGGTG 58.401 43.478 13.03 13.03 46.64 4.00
4019 4094 3.232213 TCTTAGAGTCAATGCGTGGTC 57.768 47.619 0.00 0.00 0.00 4.02
4100 4176 6.398918 ACTTTAAGTGACTCTCGCAACATAT 58.601 36.000 0.00 0.00 0.00 1.78
4101 4177 6.874134 ACTTTAAGTGACTCTCGCAACATATT 59.126 34.615 0.00 0.00 0.00 1.28
4102 4178 6.887376 TTAAGTGACTCTCGCAACATATTC 57.113 37.500 0.00 0.00 0.00 1.75
4103 4179 4.456280 AGTGACTCTCGCAACATATTCA 57.544 40.909 0.00 0.00 0.00 2.57
4104 4180 5.016051 AGTGACTCTCGCAACATATTCAT 57.984 39.130 0.00 0.00 0.00 2.57
4105 4181 6.149129 AGTGACTCTCGCAACATATTCATA 57.851 37.500 0.00 0.00 0.00 2.15
4106 4182 6.573434 AGTGACTCTCGCAACATATTCATAA 58.427 36.000 0.00 0.00 0.00 1.90
4107 4183 7.212976 AGTGACTCTCGCAACATATTCATAAT 58.787 34.615 0.00 0.00 0.00 1.28
4206 4282 5.009010 GGTCATATATGTCTTGCCTTGGTTG 59.991 44.000 12.42 0.00 0.00 3.77
4247 4323 5.009610 ACCTTGTTTAGCAATTGACATCGTT 59.990 36.000 10.34 0.00 36.36 3.85
4329 4406 3.604875 AGAGTAAATCGGCTCGGAAAA 57.395 42.857 0.00 0.00 36.88 2.29
4333 4410 3.933332 AGTAAATCGGCTCGGAAAAAGAG 59.067 43.478 0.00 0.00 38.68 2.85
4413 4491 5.382616 TCCAATCATATTGAGCAGCATCTT 58.617 37.500 0.00 0.00 0.00 2.40
4423 4501 3.959449 TGAGCAGCATCTTCAGAGACTAT 59.041 43.478 0.00 0.00 33.99 2.12
4505 4591 5.990668 GGCTCTCCAGAGACCTTTTAATAA 58.009 41.667 7.84 0.00 44.42 1.40
4506 4592 6.596621 GGCTCTCCAGAGACCTTTTAATAAT 58.403 40.000 7.84 0.00 44.42 1.28
4855 4946 2.496899 AAACAGTAGGCCCTGACATG 57.503 50.000 15.14 6.90 36.30 3.21
4859 4950 0.618680 AGTAGGCCCTGACATGAGCA 60.619 55.000 0.00 0.00 0.00 4.26
4860 4951 0.179062 GTAGGCCCTGACATGAGCAG 60.179 60.000 0.00 6.54 0.00 4.24
4861 4952 0.618680 TAGGCCCTGACATGAGCAGT 60.619 55.000 15.56 4.06 0.00 4.40
4862 4953 1.748122 GGCCCTGACATGAGCAGTG 60.748 63.158 15.56 8.38 0.00 3.66
4863 4954 2.404995 GCCCTGACATGAGCAGTGC 61.405 63.158 7.13 7.13 30.10 4.40
4864 4955 1.298993 CCCTGACATGAGCAGTGCT 59.701 57.895 19.86 19.86 43.88 4.40
4865 4956 1.025113 CCCTGACATGAGCAGTGCTG 61.025 60.000 25.35 12.14 39.88 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.224549 TCATACTGTTTTCCGCAAACCG 59.775 45.455 6.12 3.16 43.87 4.44
17 18 3.907894 TCATACTGTTTTCCGCAAACC 57.092 42.857 6.12 0.00 43.87 3.27
18 19 3.978855 GGTTCATACTGTTTTCCGCAAAC 59.021 43.478 2.34 2.34 44.64 2.93
19 20 3.304123 CGGTTCATACTGTTTTCCGCAAA 60.304 43.478 0.00 0.00 0.00 3.68
20 21 2.224549 CGGTTCATACTGTTTTCCGCAA 59.775 45.455 0.00 0.00 0.00 4.85
21 22 1.801771 CGGTTCATACTGTTTTCCGCA 59.198 47.619 0.00 0.00 0.00 5.69
22 23 1.129811 CCGGTTCATACTGTTTTCCGC 59.870 52.381 0.00 0.00 35.95 5.54
23 24 1.129811 GCCGGTTCATACTGTTTTCCG 59.870 52.381 1.90 0.00 36.85 4.30
24 25 1.129811 CGCCGGTTCATACTGTTTTCC 59.870 52.381 1.90 0.00 0.00 3.13
25 26 1.465187 GCGCCGGTTCATACTGTTTTC 60.465 52.381 1.90 0.00 0.00 2.29
26 27 0.519961 GCGCCGGTTCATACTGTTTT 59.480 50.000 1.90 0.00 0.00 2.43
27 28 1.303091 GGCGCCGGTTCATACTGTTT 61.303 55.000 12.58 0.00 0.00 2.83
28 29 1.743995 GGCGCCGGTTCATACTGTT 60.744 57.895 12.58 0.00 0.00 3.16
29 30 2.125269 GGCGCCGGTTCATACTGT 60.125 61.111 12.58 0.00 0.00 3.55
30 31 2.173669 CAGGCGCCGGTTCATACTG 61.174 63.158 23.20 6.45 0.00 2.74
31 32 2.186903 CAGGCGCCGGTTCATACT 59.813 61.111 23.20 0.00 0.00 2.12
32 33 3.573491 GCAGGCGCCGGTTCATAC 61.573 66.667 27.43 6.15 0.00 2.39
33 34 4.089239 TGCAGGCGCCGGTTCATA 62.089 61.111 27.43 6.95 37.32 2.15
44 45 0.532862 TCCTATTTAGCGCTGCAGGC 60.533 55.000 22.90 16.82 37.64 4.85
45 46 1.953559 TTCCTATTTAGCGCTGCAGG 58.046 50.000 22.90 19.48 0.00 4.85
46 47 3.851105 GCATTTCCTATTTAGCGCTGCAG 60.851 47.826 22.90 10.11 0.00 4.41
47 48 2.033299 GCATTTCCTATTTAGCGCTGCA 59.967 45.455 22.90 6.48 0.00 4.41
48 49 2.605580 GGCATTTCCTATTTAGCGCTGC 60.606 50.000 22.90 10.93 0.00 5.25
49 50 2.618241 TGGCATTTCCTATTTAGCGCTG 59.382 45.455 22.90 1.61 35.26 5.18
50 51 2.930950 TGGCATTTCCTATTTAGCGCT 58.069 42.857 17.26 17.26 35.26 5.92
51 52 3.667960 CGATGGCATTTCCTATTTAGCGC 60.668 47.826 0.00 0.00 35.26 5.92
52 53 3.745975 TCGATGGCATTTCCTATTTAGCG 59.254 43.478 0.00 0.00 35.26 4.26
53 54 5.452777 GTTCGATGGCATTTCCTATTTAGC 58.547 41.667 0.00 0.00 35.26 3.09
54 55 5.048713 GGGTTCGATGGCATTTCCTATTTAG 60.049 44.000 0.00 0.00 35.26 1.85
55 56 4.825085 GGGTTCGATGGCATTTCCTATTTA 59.175 41.667 0.00 0.00 35.26 1.40
56 57 3.636764 GGGTTCGATGGCATTTCCTATTT 59.363 43.478 0.00 0.00 35.26 1.40
57 58 3.222603 GGGTTCGATGGCATTTCCTATT 58.777 45.455 0.00 0.00 35.26 1.73
58 59 2.174639 TGGGTTCGATGGCATTTCCTAT 59.825 45.455 0.00 0.00 35.26 2.57
59 60 1.562008 TGGGTTCGATGGCATTTCCTA 59.438 47.619 0.00 0.00 35.26 2.94
60 61 0.331278 TGGGTTCGATGGCATTTCCT 59.669 50.000 0.00 0.00 35.26 3.36
61 62 0.740737 CTGGGTTCGATGGCATTTCC 59.259 55.000 0.00 2.21 0.00 3.13
62 63 0.740737 CCTGGGTTCGATGGCATTTC 59.259 55.000 0.00 0.00 0.00 2.17
63 64 0.331278 TCCTGGGTTCGATGGCATTT 59.669 50.000 0.00 0.00 0.00 2.32
64 65 0.394352 GTCCTGGGTTCGATGGCATT 60.394 55.000 0.00 0.00 0.00 3.56
65 66 1.224592 GTCCTGGGTTCGATGGCAT 59.775 57.895 0.00 0.00 0.00 4.40
66 67 2.668632 GTCCTGGGTTCGATGGCA 59.331 61.111 0.00 0.00 0.00 4.92
67 68 2.124695 GGTCCTGGGTTCGATGGC 60.125 66.667 0.00 0.00 0.00 4.40
68 69 0.392998 CAAGGTCCTGGGTTCGATGG 60.393 60.000 0.00 0.00 0.00 3.51
69 70 1.026718 GCAAGGTCCTGGGTTCGATG 61.027 60.000 0.00 0.00 0.00 3.84
106 107 5.589192 AGTCGAATGTATTACTGTGGCTAC 58.411 41.667 0.00 0.00 0.00 3.58
501 516 8.872845 GGTAATTTCAATTAATGTTTCAGCCTG 58.127 33.333 0.00 0.00 33.05 4.85
627 653 5.290386 CGGGCTTCTAATTTCGTTCTAGAT 58.710 41.667 0.00 0.00 0.00 1.98
646 672 1.886542 ACTTGAGAAAATGTTCCGGGC 59.113 47.619 0.00 0.00 33.92 6.13
686 713 5.525378 TCATGTTTTGAAAATTTGTTCCGGG 59.475 36.000 0.00 0.00 0.00 5.73
687 714 6.595772 TCATGTTTTGAAAATTTGTTCCGG 57.404 33.333 0.00 0.00 0.00 5.14
688 715 7.459486 TGTTCATGTTTTGAAAATTTGTTCCG 58.541 30.769 0.00 0.00 45.71 4.30
689 716 9.786105 AATGTTCATGTTTTGAAAATTTGTTCC 57.214 25.926 0.00 0.00 45.94 3.62
723 750 6.036191 TCCCGTTTAGAAAAATTGTTTGCAAC 59.964 34.615 0.00 0.00 37.44 4.17
768 797 9.416058 GTTTTTGTACACAAATTTCGGAAATTC 57.584 29.630 24.45 13.80 44.30 2.17
786 816 9.522804 AAAATGTTCGCATCTTAAGTTTTTGTA 57.477 25.926 1.63 0.00 36.70 2.41
799 829 7.786114 TCAGAAATTTGAAAAATGTTCGCATC 58.214 30.769 0.00 0.00 36.70 3.91
827 857 7.645735 GCCTGTTTGTTTTCTTTTTCAACAAAA 59.354 29.630 10.20 2.79 46.59 2.44
845 876 3.118811 TCCCTTTTCTGTTTGCCTGTTTG 60.119 43.478 0.00 0.00 0.00 2.93
849 880 3.817709 TTTCCCTTTTCTGTTTGCCTG 57.182 42.857 0.00 0.00 0.00 4.85
852 883 4.177783 TCGTTTTTCCCTTTTCTGTTTGC 58.822 39.130 0.00 0.00 0.00 3.68
853 884 6.713792 TTTCGTTTTTCCCTTTTCTGTTTG 57.286 33.333 0.00 0.00 0.00 2.93
955 994 9.396022 CCTTCTAGCAATTCTATCTGGTTTTAA 57.604 33.333 0.00 0.00 0.00 1.52
966 1005 7.827729 GGTTTTAGGAACCTTCTAGCAATTCTA 59.172 37.037 0.00 0.00 37.34 2.10
971 1010 4.040706 TCGGTTTTAGGAACCTTCTAGCAA 59.959 41.667 0.00 0.00 38.15 3.91
1061 1122 1.481242 GGCCCAGGAAATCCCTATTGG 60.481 57.143 0.00 0.00 45.60 3.16
1062 1123 1.500736 AGGCCCAGGAAATCCCTATTG 59.499 52.381 0.00 0.00 45.60 1.90
1063 1124 1.927051 AGGCCCAGGAAATCCCTATT 58.073 50.000 0.00 0.00 45.60 1.73
1114 1175 1.080772 GGGCCAAGCTAAAACGTGC 60.081 57.895 4.39 0.00 0.00 5.34
1151 1212 2.148052 TGGTACCCAAACCTGGCGA 61.148 57.895 10.07 0.00 41.99 5.54
1219 1280 2.829043 TTTGTGGCCGACGGAGATCG 62.829 60.000 20.50 0.00 45.88 3.69
1220 1281 0.672401 TTTTGTGGCCGACGGAGATC 60.672 55.000 20.50 4.98 0.00 2.75
1221 1282 0.035439 ATTTTGTGGCCGACGGAGAT 60.035 50.000 20.50 0.00 0.00 2.75
1222 1283 0.250553 AATTTTGTGGCCGACGGAGA 60.251 50.000 20.50 0.00 0.00 3.71
1223 1284 0.168128 GAATTTTGTGGCCGACGGAG 59.832 55.000 20.50 0.00 0.00 4.63
1224 1285 1.238625 GGAATTTTGTGGCCGACGGA 61.239 55.000 20.50 0.00 0.00 4.69
1225 1286 1.211709 GGAATTTTGTGGCCGACGG 59.788 57.895 10.29 10.29 0.00 4.79
1226 1287 1.211709 GGGAATTTTGTGGCCGACG 59.788 57.895 0.00 0.00 0.00 5.12
1227 1288 1.182385 TGGGGAATTTTGTGGCCGAC 61.182 55.000 0.00 0.00 0.00 4.79
1228 1289 0.252012 ATGGGGAATTTTGTGGCCGA 60.252 50.000 0.00 0.00 0.00 5.54
1229 1290 0.175531 GATGGGGAATTTTGTGGCCG 59.824 55.000 0.00 0.00 0.00 6.13
1230 1291 0.175531 CGATGGGGAATTTTGTGGCC 59.824 55.000 0.00 0.00 0.00 5.36
1231 1292 0.175531 CCGATGGGGAATTTTGTGGC 59.824 55.000 0.00 0.00 38.47 5.01
1232 1293 1.476488 GACCGATGGGGAATTTTGTGG 59.524 52.381 0.00 0.00 39.97 4.17
1233 1294 2.166829 TGACCGATGGGGAATTTTGTG 58.833 47.619 0.00 0.00 39.97 3.33
1234 1295 2.595750 TGACCGATGGGGAATTTTGT 57.404 45.000 0.00 0.00 39.97 2.83
1235 1296 2.362077 GGATGACCGATGGGGAATTTTG 59.638 50.000 0.00 0.00 39.97 2.44
1236 1297 2.024464 TGGATGACCGATGGGGAATTTT 60.024 45.455 0.00 0.00 39.97 1.82
1237 1298 1.568597 TGGATGACCGATGGGGAATTT 59.431 47.619 0.00 0.00 39.97 1.82
1238 1299 1.221635 TGGATGACCGATGGGGAATT 58.778 50.000 0.00 0.00 39.97 2.17
1239 1300 1.449271 ATGGATGACCGATGGGGAAT 58.551 50.000 0.00 0.00 39.97 3.01
1240 1301 1.977854 CTATGGATGACCGATGGGGAA 59.022 52.381 0.00 0.00 39.97 3.97
1241 1302 1.644509 CTATGGATGACCGATGGGGA 58.355 55.000 0.00 0.00 39.97 4.81
1242 1303 0.615331 CCTATGGATGACCGATGGGG 59.385 60.000 0.00 0.00 43.62 4.96
1243 1304 1.644509 TCCTATGGATGACCGATGGG 58.355 55.000 0.00 0.00 39.42 4.00
1244 1305 3.769739 TTTCCTATGGATGACCGATGG 57.230 47.619 0.00 0.00 39.42 3.51
1245 1306 3.815401 GGTTTTCCTATGGATGACCGATG 59.185 47.826 0.00 0.00 36.56 3.84
1246 1307 4.086706 GGTTTTCCTATGGATGACCGAT 57.913 45.455 0.00 0.00 36.56 4.18
1247 1308 3.553828 GGTTTTCCTATGGATGACCGA 57.446 47.619 0.00 0.00 36.56 4.69
1260 1321 2.439701 GGGGCGGCTAGGTTTTCC 60.440 66.667 9.56 0.00 41.05 3.13
1261 1322 2.439701 GGGGGCGGCTAGGTTTTC 60.440 66.667 9.56 0.00 0.00 2.29
1757 1818 5.116084 ACATGGTTGTTATGGCAGTAGAT 57.884 39.130 0.00 0.00 29.55 1.98
1758 1819 4.513442 GACATGGTTGTTATGGCAGTAGA 58.487 43.478 0.00 0.00 35.79 2.59
1759 1820 3.309682 CGACATGGTTGTTATGGCAGTAG 59.690 47.826 0.00 0.00 35.79 2.57
1760 1821 3.266636 CGACATGGTTGTTATGGCAGTA 58.733 45.455 0.00 0.00 35.79 2.74
1761 1822 2.083774 CGACATGGTTGTTATGGCAGT 58.916 47.619 0.00 0.00 35.79 4.40
1762 1823 1.401552 CCGACATGGTTGTTATGGCAG 59.598 52.381 0.00 0.00 35.79 4.85
1763 1824 1.458398 CCGACATGGTTGTTATGGCA 58.542 50.000 0.00 0.00 35.79 4.92
1764 1825 0.738389 CCCGACATGGTTGTTATGGC 59.262 55.000 0.00 0.00 35.79 4.40
1765 1826 1.742831 CACCCGACATGGTTGTTATGG 59.257 52.381 0.00 0.00 36.12 2.74
1766 1827 2.705730 TCACCCGACATGGTTGTTATG 58.294 47.619 0.00 0.00 36.12 1.90
1767 1828 3.278574 CATCACCCGACATGGTTGTTAT 58.721 45.455 0.00 0.00 36.12 1.89
1768 1829 2.705730 CATCACCCGACATGGTTGTTA 58.294 47.619 0.00 0.00 36.12 2.41
1769 1830 1.533625 CATCACCCGACATGGTTGTT 58.466 50.000 0.00 0.00 36.12 2.83
1770 1831 0.960364 GCATCACCCGACATGGTTGT 60.960 55.000 0.00 0.00 36.12 3.32
1771 1832 1.656818 GGCATCACCCGACATGGTTG 61.657 60.000 0.00 0.00 36.12 3.77
1772 1833 1.378514 GGCATCACCCGACATGGTT 60.379 57.895 0.00 0.00 36.12 3.67
1773 1834 2.272146 GGCATCACCCGACATGGT 59.728 61.111 0.00 0.00 39.96 3.55
1809 1870 4.508128 TTCATCGTCGAGGCGGCC 62.508 66.667 12.11 12.11 0.00 6.13
1810 1871 2.685387 ATCTTCATCGTCGAGGCGGC 62.685 60.000 0.00 0.00 0.00 6.53
1811 1872 0.936764 CATCTTCATCGTCGAGGCGG 60.937 60.000 1.15 0.00 0.00 6.13
1812 1873 0.936764 CCATCTTCATCGTCGAGGCG 60.937 60.000 1.15 0.00 0.00 5.52
1813 1874 0.103208 ACCATCTTCATCGTCGAGGC 59.897 55.000 1.15 0.00 0.00 4.70
1814 1875 1.845266 CACCATCTTCATCGTCGAGG 58.155 55.000 0.00 0.00 0.00 4.63
1815 1876 1.203928 GCACCATCTTCATCGTCGAG 58.796 55.000 0.00 0.00 0.00 4.04
1816 1877 0.179111 GGCACCATCTTCATCGTCGA 60.179 55.000 0.00 0.00 0.00 4.20
1817 1878 0.460109 TGGCACCATCTTCATCGTCG 60.460 55.000 0.00 0.00 0.00 5.12
1818 1879 1.134699 TCTGGCACCATCTTCATCGTC 60.135 52.381 0.00 0.00 0.00 4.20
1819 1880 0.904649 TCTGGCACCATCTTCATCGT 59.095 50.000 0.00 0.00 0.00 3.73
1820 1881 2.251409 ATCTGGCACCATCTTCATCG 57.749 50.000 0.00 0.00 0.00 3.84
1821 1882 2.034305 GCAATCTGGCACCATCTTCATC 59.966 50.000 0.00 0.00 0.00 2.92
1822 1883 2.029623 GCAATCTGGCACCATCTTCAT 58.970 47.619 0.00 0.00 0.00 2.57
1823 1884 1.466856 GCAATCTGGCACCATCTTCA 58.533 50.000 0.00 0.00 0.00 3.02
1824 1885 0.743097 GGCAATCTGGCACCATCTTC 59.257 55.000 0.00 0.00 43.14 2.87
1825 1886 1.033746 CGGCAATCTGGCACCATCTT 61.034 55.000 0.94 0.00 43.94 2.40
1826 1887 1.452651 CGGCAATCTGGCACCATCT 60.453 57.895 0.94 0.00 43.94 2.90
1827 1888 3.113745 CGGCAATCTGGCACCATC 58.886 61.111 0.94 0.00 43.94 3.51
1828 1889 3.142838 GCGGCAATCTGGCACCAT 61.143 61.111 0.00 0.00 43.94 3.55
1834 1895 4.473520 ACTCGGGCGGCAATCTGG 62.474 66.667 12.47 0.00 0.00 3.86
1835 1896 3.197790 CACTCGGGCGGCAATCTG 61.198 66.667 12.47 0.00 0.00 2.90
1836 1897 3.665675 GACACTCGGGCGGCAATCT 62.666 63.158 12.47 0.00 0.00 2.40
1837 1898 3.195698 GACACTCGGGCGGCAATC 61.196 66.667 12.47 0.00 0.00 2.67
1838 1899 3.706373 AGACACTCGGGCGGCAAT 61.706 61.111 12.47 0.00 0.00 3.56
1839 1900 4.680237 CAGACACTCGGGCGGCAA 62.680 66.667 12.47 0.00 0.00 4.52
1844 1905 3.695606 TCCAGCAGACACTCGGGC 61.696 66.667 0.00 0.00 0.00 6.13
1845 1906 2.262915 GTCCAGCAGACACTCGGG 59.737 66.667 2.27 0.00 45.55 5.14
1867 1928 4.117372 CGAAGTCCGTGCGAACGC 62.117 66.667 11.45 12.33 42.35 4.84
1868 1929 2.427905 TCGAAGTCCGTGCGAACG 60.428 61.111 9.60 9.60 39.75 3.95
1869 1930 2.704193 CGTCGAAGTCCGTGCGAAC 61.704 63.158 0.00 0.00 38.89 3.95
1870 1931 2.191354 ATCGTCGAAGTCCGTGCGAA 62.191 55.000 0.00 0.00 44.12 4.70
1871 1932 2.683859 ATCGTCGAAGTCCGTGCGA 61.684 57.895 0.00 0.00 44.61 5.10
1872 1933 2.202440 ATCGTCGAAGTCCGTGCG 60.202 61.111 0.00 0.00 39.75 5.34
1873 1934 1.154093 TCATCGTCGAAGTCCGTGC 60.154 57.895 0.00 0.00 39.75 5.34
1874 1935 1.126421 CGTCATCGTCGAAGTCCGTG 61.126 60.000 0.00 0.00 39.75 4.94
1875 1936 1.134075 CGTCATCGTCGAAGTCCGT 59.866 57.895 0.00 0.00 39.75 4.69
1876 1937 0.027716 ATCGTCATCGTCGAAGTCCG 59.972 55.000 0.00 2.65 40.61 4.79
1877 1938 1.063616 TGATCGTCATCGTCGAAGTCC 59.936 52.381 0.00 0.00 40.61 3.85
1878 1939 2.367772 CTGATCGTCATCGTCGAAGTC 58.632 52.381 0.00 0.00 40.61 3.01
1879 1940 1.532090 GCTGATCGTCATCGTCGAAGT 60.532 52.381 0.00 0.00 40.61 3.01
1880 1941 1.116436 GCTGATCGTCATCGTCGAAG 58.884 55.000 0.00 0.00 40.61 3.79
1881 1942 0.450184 TGCTGATCGTCATCGTCGAA 59.550 50.000 0.00 0.00 40.61 3.71
1882 1943 0.450184 TTGCTGATCGTCATCGTCGA 59.550 50.000 0.00 0.00 41.45 4.20
1883 1944 0.842613 CTTGCTGATCGTCATCGTCG 59.157 55.000 0.00 0.00 38.33 5.12
1884 1945 1.849219 GTCTTGCTGATCGTCATCGTC 59.151 52.381 0.00 0.00 38.33 4.20
1885 1946 1.469940 GGTCTTGCTGATCGTCATCGT 60.470 52.381 0.00 0.00 38.33 3.73
1886 1947 1.202348 AGGTCTTGCTGATCGTCATCG 60.202 52.381 0.00 0.00 38.55 3.84
1887 1948 2.159184 TGAGGTCTTGCTGATCGTCATC 60.159 50.000 0.00 0.00 0.00 2.92
1888 1949 1.827344 TGAGGTCTTGCTGATCGTCAT 59.173 47.619 0.00 0.00 0.00 3.06
1889 1950 1.256812 TGAGGTCTTGCTGATCGTCA 58.743 50.000 0.00 0.00 0.00 4.35
1890 1951 2.468831 GATGAGGTCTTGCTGATCGTC 58.531 52.381 0.00 0.00 0.00 4.20
1891 1952 1.202348 CGATGAGGTCTTGCTGATCGT 60.202 52.381 0.00 0.00 0.00 3.73
1892 1953 1.485397 CGATGAGGTCTTGCTGATCG 58.515 55.000 0.00 0.00 0.00 3.69
1893 1954 1.216122 GCGATGAGGTCTTGCTGATC 58.784 55.000 0.00 0.00 0.00 2.92
1894 1955 0.179062 GGCGATGAGGTCTTGCTGAT 60.179 55.000 0.00 0.00 0.00 2.90
1895 1956 1.219124 GGCGATGAGGTCTTGCTGA 59.781 57.895 0.00 0.00 0.00 4.26
1896 1957 0.392193 AAGGCGATGAGGTCTTGCTG 60.392 55.000 0.00 0.00 29.02 4.41
1897 1958 0.392193 CAAGGCGATGAGGTCTTGCT 60.392 55.000 0.00 0.00 42.06 3.91
1898 1959 2.093216 CAAGGCGATGAGGTCTTGC 58.907 57.895 0.00 0.00 42.06 4.01
1900 1961 0.036732 TTGCAAGGCGATGAGGTCTT 59.963 50.000 0.00 0.00 30.49 3.01
1901 1962 0.674895 GTTGCAAGGCGATGAGGTCT 60.675 55.000 0.00 0.00 0.00 3.85
1902 1963 1.648467 GGTTGCAAGGCGATGAGGTC 61.648 60.000 0.00 0.00 0.00 3.85
1903 1964 1.675641 GGTTGCAAGGCGATGAGGT 60.676 57.895 0.00 0.00 0.00 3.85
1904 1965 2.409870 GGGTTGCAAGGCGATGAGG 61.410 63.158 0.00 0.00 0.00 3.86
1905 1966 0.962356 AAGGGTTGCAAGGCGATGAG 60.962 55.000 0.00 0.00 0.00 2.90
1906 1967 0.960364 GAAGGGTTGCAAGGCGATGA 60.960 55.000 0.00 0.00 0.00 2.92
1907 1968 1.243342 TGAAGGGTTGCAAGGCGATG 61.243 55.000 0.00 0.00 0.00 3.84
1908 1969 0.539438 TTGAAGGGTTGCAAGGCGAT 60.539 50.000 0.00 0.00 0.00 4.58
1909 1970 0.753479 TTTGAAGGGTTGCAAGGCGA 60.753 50.000 0.00 0.00 0.00 5.54
1910 1971 0.103937 TTTTGAAGGGTTGCAAGGCG 59.896 50.000 0.00 0.00 0.00 5.52
1911 1972 2.416747 GATTTTGAAGGGTTGCAAGGC 58.583 47.619 0.00 0.00 0.00 4.35
1912 1973 2.634453 AGGATTTTGAAGGGTTGCAAGG 59.366 45.455 0.00 0.00 0.00 3.61
1913 1974 3.321682 TCAGGATTTTGAAGGGTTGCAAG 59.678 43.478 0.00 0.00 0.00 4.01
1914 1975 3.303938 TCAGGATTTTGAAGGGTTGCAA 58.696 40.909 0.00 0.00 0.00 4.08
1915 1976 2.892852 CTCAGGATTTTGAAGGGTTGCA 59.107 45.455 0.00 0.00 0.00 4.08
1916 1977 3.157087 TCTCAGGATTTTGAAGGGTTGC 58.843 45.455 0.00 0.00 0.00 4.17
1917 1978 4.768968 ACATCTCAGGATTTTGAAGGGTTG 59.231 41.667 0.00 0.00 0.00 3.77
1918 1979 4.768968 CACATCTCAGGATTTTGAAGGGTT 59.231 41.667 0.00 0.00 0.00 4.11
1919 1980 4.202609 ACACATCTCAGGATTTTGAAGGGT 60.203 41.667 0.00 0.00 0.00 4.34
1920 1981 4.157289 CACACATCTCAGGATTTTGAAGGG 59.843 45.833 0.00 0.00 0.00 3.95
1944 2005 0.475044 AACCCCAACGCCTTCTTGTA 59.525 50.000 0.00 0.00 0.00 2.41
1967 2028 2.685017 TGGGTCTGCAGCTCGGAT 60.685 61.111 9.47 0.00 31.70 4.18
2104 2165 1.213013 GTGAGGACGACGATGCTGT 59.787 57.895 0.00 0.00 0.00 4.40
2144 2205 5.194473 AGACCAGATAGAAGGTGTAGTCA 57.806 43.478 0.00 0.00 38.50 3.41
2171 2232 2.925170 AGCGAACCACTGGAGGCT 60.925 61.111 0.71 4.37 0.00 4.58
2208 2269 6.865205 CCTGTGAGAATGAAACAAGGATTTTC 59.135 38.462 0.00 0.00 34.16 2.29
2209 2270 6.239402 CCCTGTGAGAATGAAACAAGGATTTT 60.239 38.462 0.00 0.00 0.00 1.82
2211 2272 4.768968 CCCTGTGAGAATGAAACAAGGATT 59.231 41.667 0.00 0.00 0.00 3.01
2212 2273 4.338879 CCCTGTGAGAATGAAACAAGGAT 58.661 43.478 0.00 0.00 0.00 3.24
2213 2274 3.754965 CCCTGTGAGAATGAAACAAGGA 58.245 45.455 0.00 0.00 0.00 3.36
2214 2275 2.229784 GCCCTGTGAGAATGAAACAAGG 59.770 50.000 0.00 0.00 0.00 3.61
2215 2276 3.152341 AGCCCTGTGAGAATGAAACAAG 58.848 45.455 0.00 0.00 0.00 3.16
2216 2277 3.149196 GAGCCCTGTGAGAATGAAACAA 58.851 45.455 0.00 0.00 0.00 2.83
2217 2278 2.106338 TGAGCCCTGTGAGAATGAAACA 59.894 45.455 0.00 0.00 0.00 2.83
2218 2279 2.746362 CTGAGCCCTGTGAGAATGAAAC 59.254 50.000 0.00 0.00 0.00 2.78
2219 2280 2.373169 ACTGAGCCCTGTGAGAATGAAA 59.627 45.455 0.00 0.00 0.00 2.69
2266 2327 1.798735 GCGTAGTCGGCAGTGTAGA 59.201 57.895 0.00 0.00 37.56 2.59
2277 2338 1.323534 CAATACAACCAGCGCGTAGTC 59.676 52.381 8.43 0.00 0.00 2.59
2289 2350 1.202348 GTCCAGCTTGCCCAATACAAC 59.798 52.381 0.00 0.00 0.00 3.32
2346 2412 1.482182 CCAAGATGGTGACGAGGATGA 59.518 52.381 0.00 0.00 31.35 2.92
2420 2486 4.322725 CCGATAGTAAAGCCCATATCAGCA 60.323 45.833 0.00 0.00 0.00 4.41
2477 2543 0.250252 TGCACCAAGAGAATGCGACA 60.250 50.000 0.00 0.00 42.44 4.35
2540 2606 2.548707 GGGCAAGGAAAAGAAGCCAAAG 60.549 50.000 0.00 0.00 46.96 2.77
2616 2686 0.249911 CCTATGGTGCGGTAGGCTTC 60.250 60.000 0.00 0.00 44.05 3.86
2637 2707 2.076863 CCTGATGAAACCTTGGACGAC 58.923 52.381 0.00 0.00 0.00 4.34
2647 2717 3.040147 TGGAGACGAACCTGATGAAAC 57.960 47.619 0.00 0.00 0.00 2.78
2651 2721 1.405463 TCGATGGAGACGAACCTGATG 59.595 52.381 0.00 0.00 36.84 3.07
2725 2795 0.027063 CCACACACGGTTCAACGTTC 59.973 55.000 0.00 0.00 46.25 3.95
2740 2810 1.813862 GCTTGTACTCCAACTGCCACA 60.814 52.381 0.00 0.00 0.00 4.17
2750 2820 2.085320 TCGAGACTGAGCTTGTACTCC 58.915 52.381 0.00 0.00 35.72 3.85
2932 3002 0.735978 CTGCATGTTGACCGCGAGTA 60.736 55.000 8.23 0.00 0.00 2.59
2978 3048 0.179059 TGCCAAAACAGTCTGCGAGA 60.179 50.000 0.00 0.00 0.00 4.04
3014 3084 4.083802 CGGCTGAAACTAGAAGAAACAAGG 60.084 45.833 0.00 0.00 0.00 3.61
3021 3091 3.767673 ACATACCGGCTGAAACTAGAAGA 59.232 43.478 11.34 0.00 0.00 2.87
3057 3127 8.880750 GTCCATCATCATAATGTGTAGATCATG 58.119 37.037 0.00 0.00 34.32 3.07
3058 3128 8.599792 TGTCCATCATCATAATGTGTAGATCAT 58.400 33.333 0.00 0.00 34.32 2.45
3059 3129 7.874528 GTGTCCATCATCATAATGTGTAGATCA 59.125 37.037 0.00 0.00 34.32 2.92
3060 3130 7.062722 CGTGTCCATCATCATAATGTGTAGATC 59.937 40.741 0.00 0.00 34.32 2.75
3061 3131 6.870439 CGTGTCCATCATCATAATGTGTAGAT 59.130 38.462 0.00 0.00 34.32 1.98
3062 3132 6.040391 TCGTGTCCATCATCATAATGTGTAGA 59.960 38.462 0.00 0.00 34.32 2.59
3063 3133 6.215845 TCGTGTCCATCATCATAATGTGTAG 58.784 40.000 0.00 0.00 34.32 2.74
3064 3134 6.155475 TCGTGTCCATCATCATAATGTGTA 57.845 37.500 0.00 0.00 34.32 2.90
3065 3135 5.022282 TCGTGTCCATCATCATAATGTGT 57.978 39.130 0.00 0.00 34.32 3.72
3066 3136 5.697633 TCATCGTGTCCATCATCATAATGTG 59.302 40.000 0.00 0.00 34.32 3.21
3067 3137 5.857268 TCATCGTGTCCATCATCATAATGT 58.143 37.500 0.00 0.00 34.32 2.71
3068 3138 6.620089 GCTTCATCGTGTCCATCATCATAATG 60.620 42.308 0.00 0.00 0.00 1.90
3069 3139 5.410746 GCTTCATCGTGTCCATCATCATAAT 59.589 40.000 0.00 0.00 0.00 1.28
3070 3140 4.751600 GCTTCATCGTGTCCATCATCATAA 59.248 41.667 0.00 0.00 0.00 1.90
3071 3141 4.202243 TGCTTCATCGTGTCCATCATCATA 60.202 41.667 0.00 0.00 0.00 2.15
3072 3142 3.136763 GCTTCATCGTGTCCATCATCAT 58.863 45.455 0.00 0.00 0.00 2.45
3073 3143 2.093553 TGCTTCATCGTGTCCATCATCA 60.094 45.455 0.00 0.00 0.00 3.07
3074 3144 2.554142 TGCTTCATCGTGTCCATCATC 58.446 47.619 0.00 0.00 0.00 2.92
3075 3145 2.696989 TGCTTCATCGTGTCCATCAT 57.303 45.000 0.00 0.00 0.00 2.45
3076 3146 2.470983 TTGCTTCATCGTGTCCATCA 57.529 45.000 0.00 0.00 0.00 3.07
3077 3147 3.488047 CCATTTGCTTCATCGTGTCCATC 60.488 47.826 0.00 0.00 0.00 3.51
3078 3148 2.424601 CCATTTGCTTCATCGTGTCCAT 59.575 45.455 0.00 0.00 0.00 3.41
3079 3149 1.811965 CCATTTGCTTCATCGTGTCCA 59.188 47.619 0.00 0.00 0.00 4.02
3080 3150 1.468054 GCCATTTGCTTCATCGTGTCC 60.468 52.381 0.00 0.00 36.87 4.02
3081 3151 1.791555 CGCCATTTGCTTCATCGTGTC 60.792 52.381 0.00 0.00 38.05 3.67
3082 3152 0.168788 CGCCATTTGCTTCATCGTGT 59.831 50.000 0.00 0.00 38.05 4.49
3083 3153 0.168788 ACGCCATTTGCTTCATCGTG 59.831 50.000 0.00 0.00 38.05 4.35
3084 3154 0.447801 GACGCCATTTGCTTCATCGT 59.552 50.000 0.00 0.00 38.11 3.73
3085 3155 0.587242 CGACGCCATTTGCTTCATCG 60.587 55.000 0.00 0.00 38.10 3.84
3086 3156 0.726827 TCGACGCCATTTGCTTCATC 59.273 50.000 0.00 0.00 38.10 2.92
3087 3157 1.331756 GATCGACGCCATTTGCTTCAT 59.668 47.619 0.00 0.00 38.10 2.57
3088 3158 0.726827 GATCGACGCCATTTGCTTCA 59.273 50.000 0.00 0.00 38.10 3.02
3089 3159 0.028110 GGATCGACGCCATTTGCTTC 59.972 55.000 1.43 0.00 38.05 3.86
3090 3160 0.676466 TGGATCGACGCCATTTGCTT 60.676 50.000 4.80 0.00 38.05 3.91
3091 3161 0.464373 ATGGATCGACGCCATTTGCT 60.464 50.000 14.23 0.00 43.42 3.91
3092 3162 2.024918 ATGGATCGACGCCATTTGC 58.975 52.632 14.23 0.00 43.42 3.68
3097 3167 1.599576 TCCAAATGGATCGACGCCA 59.400 52.632 10.90 10.90 39.78 5.69
3098 3168 4.532490 TCCAAATGGATCGACGCC 57.468 55.556 0.00 0.00 39.78 5.68
3099 3169 1.436983 GGGTCCAAATGGATCGACGC 61.437 60.000 5.27 0.00 46.33 5.19
3100 3170 0.814010 GGGGTCCAAATGGATCGACG 60.814 60.000 5.27 0.00 46.33 5.12
3101 3171 0.254747 TGGGGTCCAAATGGATCGAC 59.745 55.000 5.27 2.51 46.33 4.20
3135 3205 2.537714 ATCACCTTCCGAGCCTCCCT 62.538 60.000 0.00 0.00 0.00 4.20
3561 3631 5.136828 TCCCTTTGTGCAATGTTTCTAGAA 58.863 37.500 0.00 0.00 0.00 2.10
3562 3632 4.724399 TCCCTTTGTGCAATGTTTCTAGA 58.276 39.130 0.00 0.00 0.00 2.43
3709 3779 5.007234 CCACAATTGTTCTTTCGTGTAGTCA 59.993 40.000 8.77 0.00 0.00 3.41
3732 3802 2.691409 TGCTGTACAATCACTAGCCC 57.309 50.000 0.00 0.00 33.60 5.19
3743 3813 0.613260 GGAGGTGGACATGCTGTACA 59.387 55.000 0.00 0.00 39.27 2.90
3852 3926 2.848678 ATCCTCTAGCCTGTGTACCA 57.151 50.000 0.00 0.00 0.00 3.25
3932 4006 4.095946 ACATGCCACCTTGGTGAAATTAT 58.904 39.130 20.27 5.23 40.46 1.28
4413 4491 4.017126 ACCGTCATGAACATAGTCTCTGA 58.983 43.478 0.00 0.00 0.00 3.27
4423 4501 3.953712 ACATCTGTACCGTCATGAACA 57.046 42.857 0.00 0.00 0.00 3.18
4766 4856 2.093288 AGGAGAGTACGACGGTATGACA 60.093 50.000 0.00 0.00 0.00 3.58
4828 4919 6.178324 GTCAGGGCCTACTGTTTAAGTATTT 58.822 40.000 5.28 0.00 40.65 1.40
4830 4921 4.781087 TGTCAGGGCCTACTGTTTAAGTAT 59.219 41.667 5.28 0.00 40.65 2.12
4855 4946 1.534595 CCTTTTGAGTCAGCACTGCTC 59.465 52.381 0.00 12.35 36.40 4.26
4859 4950 2.435805 TGAGTCCTTTTGAGTCAGCACT 59.564 45.455 0.00 0.00 46.24 4.40
4860 4951 2.838736 TGAGTCCTTTTGAGTCAGCAC 58.161 47.619 0.00 0.00 46.24 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.