Multiple sequence alignment - TraesCS5B01G511200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G511200 chr5B 100.000 3731 0 0 1 3731 676508995 676505265 0.000000e+00 6890.0
1 TraesCS5B01G511200 chr5B 87.847 288 29 3 1 284 373512255 373512540 2.150000e-87 333.0
2 TraesCS5B01G511200 chr5B 84.615 65 7 3 3369 3433 173014148 173014087 1.120000e-05 62.1
3 TraesCS5B01G511200 chr5D 92.429 3170 170 32 602 3729 536239330 536236189 0.000000e+00 4460.0
4 TraesCS5B01G511200 chr5D 82.051 1326 206 13 1462 2763 536087599 536088916 0.000000e+00 1101.0
5 TraesCS5B01G511200 chr5D 89.309 767 60 12 670 1429 536086766 536087517 0.000000e+00 942.0
6 TraesCS5B01G511200 chr5D 88.028 284 27 5 4 283 505371841 505371561 2.780000e-86 329.0
7 TraesCS5B01G511200 chr4A 93.301 2284 121 15 644 2899 635239871 635237592 0.000000e+00 3341.0
8 TraesCS5B01G511200 chr4A 81.655 1281 198 15 1482 2741 635725755 635724491 0.000000e+00 1029.0
9 TraesCS5B01G511200 chr4A 90.682 762 64 5 674 1429 635726603 635725843 0.000000e+00 1007.0
10 TraesCS5B01G511200 chr4A 87.302 693 73 7 3049 3729 635227718 635227029 0.000000e+00 778.0
11 TraesCS5B01G511200 chr4A 90.351 228 21 1 377 603 236483602 236483375 7.830000e-77 298.0
12 TraesCS5B01G511200 chr4A 86.034 179 23 2 2877 3054 635236689 635236512 1.370000e-44 191.0
13 TraesCS5B01G511200 chr4A 96.970 33 1 0 3378 3410 694288167 694288199 5.210000e-04 56.5
14 TraesCS5B01G511200 chr7B 88.014 292 29 4 7 293 104298607 104298317 1.280000e-89 340.0
15 TraesCS5B01G511200 chr7B 85.333 75 7 4 3368 3441 466364411 466364482 1.440000e-09 75.0
16 TraesCS5B01G511200 chr5A 88.028 284 27 5 4 283 1773717 1773437 2.780000e-86 329.0
17 TraesCS5B01G511200 chr2B 87.329 292 31 4 1 287 730178996 730179286 2.780000e-86 329.0
18 TraesCS5B01G511200 chr2B 93.333 45 3 0 3368 3412 427425875 427425919 2.400000e-07 67.6
19 TraesCS5B01G511200 chr7A 87.413 286 30 4 1 282 286746856 286747139 1.290000e-84 324.0
20 TraesCS5B01G511200 chr6D 87.197 289 28 6 1 285 464465720 464466003 1.670000e-83 320.0
21 TraesCS5B01G511200 chr3D 87.324 284 31 3 4 283 29810488 29810206 1.670000e-83 320.0
22 TraesCS5B01G511200 chr3D 91.364 220 19 0 385 604 162449553 162449772 6.060000e-78 302.0
23 TraesCS5B01G511200 chr3D 85.526 76 6 5 3368 3442 229833987 229834058 1.440000e-09 75.0
24 TraesCS5B01G511200 chr1B 86.242 298 30 8 1 293 644278563 644278854 2.800000e-81 313.0
25 TraesCS5B01G511200 chr1B 91.818 220 18 0 385 604 67414226 67414445 1.300000e-79 307.0
26 TraesCS5B01G511200 chr1B 96.970 33 1 0 3378 3410 125668256 125668224 5.210000e-04 56.5
27 TraesCS5B01G511200 chr2D 92.237 219 17 0 385 603 284559957 284560175 1.010000e-80 311.0
28 TraesCS5B01G511200 chr2D 92.558 215 16 0 390 604 21826920 21826706 3.620000e-80 309.0
29 TraesCS5B01G511200 chr2D 91.071 224 19 1 384 607 204855800 204856022 6.060000e-78 302.0
30 TraesCS5B01G511200 chr2D 89.407 236 24 1 366 601 643767974 643768208 2.820000e-76 296.0
31 TraesCS5B01G511200 chr4D 91.364 220 19 0 384 603 446174075 446173856 6.060000e-78 302.0
32 TraesCS5B01G511200 chr7D 90.667 225 21 0 379 603 7524972 7524748 2.180000e-77 300.0
33 TraesCS5B01G511200 chr6B 96.970 33 1 0 3378 3410 6961144 6961176 5.210000e-04 56.5
34 TraesCS5B01G511200 chr2A 88.000 50 2 3 3365 3410 110530757 110530806 5.210000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G511200 chr5B 676505265 676508995 3730 True 6890.0 6890 100.0000 1 3731 1 chr5B.!!$R2 3730
1 TraesCS5B01G511200 chr5D 536236189 536239330 3141 True 4460.0 4460 92.4290 602 3729 1 chr5D.!!$R2 3127
2 TraesCS5B01G511200 chr5D 536086766 536088916 2150 False 1021.5 1101 85.6800 670 2763 2 chr5D.!!$F1 2093
3 TraesCS5B01G511200 chr4A 635236512 635239871 3359 True 1766.0 3341 89.6675 644 3054 2 chr4A.!!$R3 2410
4 TraesCS5B01G511200 chr4A 635724491 635726603 2112 True 1018.0 1029 86.1685 674 2741 2 chr4A.!!$R4 2067
5 TraesCS5B01G511200 chr4A 635227029 635227718 689 True 778.0 778 87.3020 3049 3729 1 chr4A.!!$R2 680

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.108774 GTCCTATGGGGCCTTAGCAC 59.891 60.0 0.84 0.0 43.97 4.40 F
193 194 0.235144 CGTCGCTAGATGGTCTACGG 59.765 60.0 0.00 0.0 30.31 4.02 F
582 583 0.314302 GAGATACGCACACGCCCTAT 59.686 55.0 0.00 0.0 45.53 2.57 F
2250 2366 0.523072 GCAAGCAGAATGAAAGGCGA 59.477 50.0 0.00 0.0 39.69 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1156 1166 0.400213 TCTTGGATGCCGAGTTGGTT 59.600 50.0 0.0 0.0 41.21 3.67 R
2121 2221 0.606401 CACCCTTCGTCATGGTGCTT 60.606 55.0 0.0 0.0 42.71 3.91 R
2274 2390 0.602905 GCAAGCAGTACGAGTTGGGT 60.603 55.0 0.0 0.0 0.00 4.51 R
3583 4659 0.457851 CGAGGTGGCTAGGAGAAGTG 59.542 60.0 0.0 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.113658 TGAATCCTTCCAATCTACACTACTC 57.886 40.000 0.00 0.00 0.00 2.59
25 26 6.897966 TGAATCCTTCCAATCTACACTACTCT 59.102 38.462 0.00 0.00 0.00 3.24
26 27 7.400339 TGAATCCTTCCAATCTACACTACTCTT 59.600 37.037 0.00 0.00 0.00 2.85
27 28 6.777213 TCCTTCCAATCTACACTACTCTTC 57.223 41.667 0.00 0.00 0.00 2.87
28 29 6.253758 TCCTTCCAATCTACACTACTCTTCA 58.746 40.000 0.00 0.00 0.00 3.02
29 30 6.897966 TCCTTCCAATCTACACTACTCTTCAT 59.102 38.462 0.00 0.00 0.00 2.57
30 31 7.068839 TCCTTCCAATCTACACTACTCTTCATC 59.931 40.741 0.00 0.00 0.00 2.92
31 32 6.378710 TCCAATCTACACTACTCTTCATCG 57.621 41.667 0.00 0.00 0.00 3.84
32 33 5.299531 TCCAATCTACACTACTCTTCATCGG 59.700 44.000 0.00 0.00 0.00 4.18
33 34 4.839668 ATCTACACTACTCTTCATCGGC 57.160 45.455 0.00 0.00 0.00 5.54
34 35 2.612672 TCTACACTACTCTTCATCGGCG 59.387 50.000 0.00 0.00 0.00 6.46
35 36 0.456221 ACACTACTCTTCATCGGCGG 59.544 55.000 7.21 0.00 0.00 6.13
36 37 0.872021 CACTACTCTTCATCGGCGGC 60.872 60.000 7.21 0.00 0.00 6.53
37 38 1.658717 CTACTCTTCATCGGCGGCG 60.659 63.158 27.15 27.15 0.00 6.46
38 39 3.133767 TACTCTTCATCGGCGGCGG 62.134 63.158 31.73 16.54 0.00 6.13
39 40 4.514577 CTCTTCATCGGCGGCGGT 62.515 66.667 31.73 23.77 0.00 5.68
40 41 4.077184 TCTTCATCGGCGGCGGTT 62.077 61.111 31.73 16.58 0.00 4.44
41 42 3.864686 CTTCATCGGCGGCGGTTG 61.865 66.667 31.73 26.46 0.00 3.77
42 43 4.690719 TTCATCGGCGGCGGTTGT 62.691 61.111 31.73 12.34 0.00 3.32
43 44 4.690719 TCATCGGCGGCGGTTGTT 62.691 61.111 31.73 8.61 0.00 2.83
44 45 2.783241 TTCATCGGCGGCGGTTGTTA 62.783 55.000 31.73 11.47 0.00 2.41
45 46 2.177580 CATCGGCGGCGGTTGTTAT 61.178 57.895 31.73 13.49 0.00 1.89
46 47 1.450669 ATCGGCGGCGGTTGTTATT 60.451 52.632 31.73 3.55 0.00 1.40
47 48 1.433837 ATCGGCGGCGGTTGTTATTC 61.434 55.000 31.73 0.00 0.00 1.75
48 49 2.104253 CGGCGGCGGTTGTTATTCT 61.104 57.895 25.36 0.00 0.00 2.40
49 50 0.806884 CGGCGGCGGTTGTTATTCTA 60.807 55.000 25.36 0.00 0.00 2.10
50 51 0.654160 GGCGGCGGTTGTTATTCTAC 59.346 55.000 9.78 0.00 0.00 2.59
51 52 1.648504 GCGGCGGTTGTTATTCTACT 58.351 50.000 9.78 0.00 0.00 2.57
52 53 1.326548 GCGGCGGTTGTTATTCTACTG 59.673 52.381 9.78 0.00 0.00 2.74
54 55 2.713927 GCGGTTGTTATTCTACTGCG 57.286 50.000 0.00 0.00 42.14 5.18
55 56 1.326548 GCGGTTGTTATTCTACTGCGG 59.673 52.381 0.00 0.00 42.14 5.69
56 57 1.931172 CGGTTGTTATTCTACTGCGGG 59.069 52.381 0.00 0.00 0.00 6.13
57 58 2.675889 CGGTTGTTATTCTACTGCGGGT 60.676 50.000 0.00 0.00 0.00 5.28
58 59 2.934553 GGTTGTTATTCTACTGCGGGTC 59.065 50.000 0.00 0.00 0.00 4.46
59 60 2.934553 GTTGTTATTCTACTGCGGGTCC 59.065 50.000 0.00 0.00 0.00 4.46
60 61 2.463752 TGTTATTCTACTGCGGGTCCT 58.536 47.619 0.00 0.00 0.00 3.85
61 62 3.634504 TGTTATTCTACTGCGGGTCCTA 58.365 45.455 0.00 0.00 0.00 2.94
62 63 4.220724 TGTTATTCTACTGCGGGTCCTAT 58.779 43.478 0.00 0.00 0.00 2.57
63 64 4.038763 TGTTATTCTACTGCGGGTCCTATG 59.961 45.833 0.00 0.00 0.00 2.23
64 65 1.410004 TTCTACTGCGGGTCCTATGG 58.590 55.000 0.00 0.00 0.00 2.74
65 66 0.469331 TCTACTGCGGGTCCTATGGG 60.469 60.000 0.00 0.00 0.00 4.00
66 67 1.458777 TACTGCGGGTCCTATGGGG 60.459 63.158 0.00 0.00 0.00 4.96
67 68 4.256180 CTGCGGGTCCTATGGGGC 62.256 72.222 0.00 0.00 36.26 5.80
74 75 2.539983 GTCCTATGGGGCCTTAGCA 58.460 57.895 0.84 0.00 42.56 3.49
75 76 0.108774 GTCCTATGGGGCCTTAGCAC 59.891 60.000 0.84 0.00 43.97 4.40
76 77 1.071471 CCTATGGGGCCTTAGCACG 59.929 63.158 0.84 0.00 46.55 5.34
77 78 1.407656 CCTATGGGGCCTTAGCACGA 61.408 60.000 0.84 0.00 46.55 4.35
78 79 0.249911 CTATGGGGCCTTAGCACGAC 60.250 60.000 0.84 0.00 46.55 4.34
79 80 2.023414 TATGGGGCCTTAGCACGACG 62.023 60.000 0.84 0.00 46.55 5.12
80 81 3.766691 GGGGCCTTAGCACGACGA 61.767 66.667 0.84 0.00 46.55 4.20
81 82 2.508663 GGGCCTTAGCACGACGAC 60.509 66.667 0.84 0.00 42.56 4.34
82 83 2.572284 GGCCTTAGCACGACGACT 59.428 61.111 0.00 0.59 42.56 4.18
83 84 1.080025 GGCCTTAGCACGACGACTT 60.080 57.895 0.00 0.00 42.56 3.01
84 85 1.077089 GGCCTTAGCACGACGACTTC 61.077 60.000 0.00 0.00 42.56 3.01
85 86 1.077089 GCCTTAGCACGACGACTTCC 61.077 60.000 0.00 0.00 39.53 3.46
86 87 0.526662 CCTTAGCACGACGACTTCCT 59.473 55.000 0.00 0.00 0.00 3.36
87 88 1.618861 CTTAGCACGACGACTTCCTG 58.381 55.000 0.00 0.00 0.00 3.86
88 89 1.199327 CTTAGCACGACGACTTCCTGA 59.801 52.381 0.00 0.00 0.00 3.86
89 90 0.520404 TAGCACGACGACTTCCTGAC 59.480 55.000 0.00 0.00 0.00 3.51
90 91 1.173444 AGCACGACGACTTCCTGACT 61.173 55.000 0.00 0.00 0.00 3.41
91 92 1.004277 GCACGACGACTTCCTGACTG 61.004 60.000 0.00 0.00 0.00 3.51
92 93 0.311165 CACGACGACTTCCTGACTGT 59.689 55.000 0.00 0.00 0.00 3.55
93 94 1.534163 CACGACGACTTCCTGACTGTA 59.466 52.381 0.00 0.00 0.00 2.74
94 95 1.534595 ACGACGACTTCCTGACTGTAC 59.465 52.381 0.00 0.00 0.00 2.90
95 96 1.805345 CGACGACTTCCTGACTGTACT 59.195 52.381 0.00 0.00 0.00 2.73
96 97 2.998670 CGACGACTTCCTGACTGTACTA 59.001 50.000 0.00 0.00 0.00 1.82
97 98 3.181522 CGACGACTTCCTGACTGTACTAC 60.182 52.174 0.00 0.00 0.00 2.73
98 99 3.748083 ACGACTTCCTGACTGTACTACA 58.252 45.455 0.00 0.00 0.00 2.74
99 100 4.139786 ACGACTTCCTGACTGTACTACAA 58.860 43.478 0.00 0.00 0.00 2.41
100 101 4.023365 ACGACTTCCTGACTGTACTACAAC 60.023 45.833 0.00 0.00 0.00 3.32
101 102 4.023450 CGACTTCCTGACTGTACTACAACA 60.023 45.833 0.00 0.00 0.00 3.33
102 103 5.506815 CGACTTCCTGACTGTACTACAACAA 60.507 44.000 0.00 0.00 0.00 2.83
103 104 5.844004 ACTTCCTGACTGTACTACAACAAG 58.156 41.667 0.00 0.52 0.00 3.16
104 105 5.363005 ACTTCCTGACTGTACTACAACAAGT 59.637 40.000 0.00 1.05 0.00 3.16
105 106 5.864418 TCCTGACTGTACTACAACAAGTT 57.136 39.130 0.00 0.00 0.00 2.66
106 107 6.229936 TCCTGACTGTACTACAACAAGTTT 57.770 37.500 0.00 0.00 0.00 2.66
107 108 6.646267 TCCTGACTGTACTACAACAAGTTTT 58.354 36.000 0.00 0.00 0.00 2.43
108 109 6.537301 TCCTGACTGTACTACAACAAGTTTTG 59.463 38.462 0.00 0.00 0.00 2.44
109 110 6.114221 TGACTGTACTACAACAAGTTTTGC 57.886 37.500 0.00 0.00 0.00 3.68
110 111 5.065474 TGACTGTACTACAACAAGTTTTGCC 59.935 40.000 0.00 0.00 0.00 4.52
111 112 5.190677 ACTGTACTACAACAAGTTTTGCCT 58.809 37.500 0.00 0.00 0.00 4.75
112 113 5.065988 ACTGTACTACAACAAGTTTTGCCTG 59.934 40.000 0.00 0.00 0.00 4.85
113 114 4.336993 TGTACTACAACAAGTTTTGCCTGG 59.663 41.667 0.00 0.00 0.00 4.45
114 115 2.100749 ACTACAACAAGTTTTGCCTGGC 59.899 45.455 12.87 12.87 0.00 4.85
115 116 1.194218 ACAACAAGTTTTGCCTGGCT 58.806 45.000 21.03 0.00 0.00 4.75
116 117 1.136891 ACAACAAGTTTTGCCTGGCTC 59.863 47.619 21.03 7.82 0.00 4.70
117 118 1.410153 CAACAAGTTTTGCCTGGCTCT 59.590 47.619 21.03 9.95 0.00 4.09
118 119 1.035139 ACAAGTTTTGCCTGGCTCTG 58.965 50.000 21.03 9.91 0.00 3.35
119 120 0.316204 CAAGTTTTGCCTGGCTCTGG 59.684 55.000 21.03 6.95 0.00 3.86
120 121 1.466851 AAGTTTTGCCTGGCTCTGGC 61.467 55.000 21.03 13.71 46.46 4.85
126 127 3.393970 CCTGGCTCTGGCGAAGGA 61.394 66.667 0.00 0.00 42.22 3.36
127 128 2.186384 CTGGCTCTGGCGAAGGAG 59.814 66.667 0.00 0.00 39.81 3.69
128 129 3.382803 CTGGCTCTGGCGAAGGAGG 62.383 68.421 0.00 0.00 39.81 4.30
129 130 4.168291 GGCTCTGGCGAAGGAGGG 62.168 72.222 0.00 0.00 39.81 4.30
130 131 4.168291 GCTCTGGCGAAGGAGGGG 62.168 72.222 0.00 0.00 0.00 4.79
131 132 4.168291 CTCTGGCGAAGGAGGGGC 62.168 72.222 0.00 0.00 0.00 5.80
133 134 4.033776 CTGGCGAAGGAGGGGCAA 62.034 66.667 0.00 0.00 38.32 4.52
134 135 3.338250 TGGCGAAGGAGGGGCAAT 61.338 61.111 0.00 0.00 35.63 3.56
135 136 2.830370 GGCGAAGGAGGGGCAATG 60.830 66.667 0.00 0.00 0.00 2.82
136 137 2.272146 GCGAAGGAGGGGCAATGA 59.728 61.111 0.00 0.00 0.00 2.57
137 138 2.115291 GCGAAGGAGGGGCAATGAC 61.115 63.158 0.00 0.00 0.00 3.06
138 139 1.815421 CGAAGGAGGGGCAATGACG 60.815 63.158 0.00 0.00 0.00 4.35
139 140 1.452108 GAAGGAGGGGCAATGACGG 60.452 63.158 0.00 0.00 0.00 4.79
140 141 3.645268 AAGGAGGGGCAATGACGGC 62.645 63.158 0.00 0.00 0.00 5.68
161 162 3.546397 GCGTCTTCGGCTCGCTTC 61.546 66.667 0.00 0.00 45.29 3.86
162 163 2.126463 CGTCTTCGGCTCGCTTCA 60.126 61.111 0.00 0.00 0.00 3.02
163 164 1.733041 CGTCTTCGGCTCGCTTCAA 60.733 57.895 0.00 0.00 0.00 2.69
164 165 1.078759 CGTCTTCGGCTCGCTTCAAT 61.079 55.000 0.00 0.00 0.00 2.57
165 166 0.371645 GTCTTCGGCTCGCTTCAATG 59.628 55.000 0.00 0.00 0.00 2.82
166 167 1.061570 CTTCGGCTCGCTTCAATGC 59.938 57.895 0.00 0.00 0.00 3.56
167 168 1.364626 CTTCGGCTCGCTTCAATGCT 61.365 55.000 0.00 0.00 0.00 3.79
168 169 0.955428 TTCGGCTCGCTTCAATGCTT 60.955 50.000 0.00 0.00 0.00 3.91
169 170 1.226211 CGGCTCGCTTCAATGCTTG 60.226 57.895 0.00 0.00 0.00 4.01
170 171 1.878775 GGCTCGCTTCAATGCTTGT 59.121 52.632 0.00 0.00 0.00 3.16
171 172 1.086696 GGCTCGCTTCAATGCTTGTA 58.913 50.000 0.00 0.00 0.00 2.41
172 173 1.063174 GGCTCGCTTCAATGCTTGTAG 59.937 52.381 0.00 0.00 0.00 2.74
173 174 1.734465 GCTCGCTTCAATGCTTGTAGT 59.266 47.619 0.00 0.00 31.53 2.73
174 175 2.222908 GCTCGCTTCAATGCTTGTAGTC 60.223 50.000 0.00 0.00 31.53 2.59
175 176 1.992667 TCGCTTCAATGCTTGTAGTCG 59.007 47.619 0.00 0.44 33.03 4.18
176 177 1.726791 CGCTTCAATGCTTGTAGTCGT 59.273 47.619 0.00 0.00 31.53 4.34
177 178 2.222596 CGCTTCAATGCTTGTAGTCGTC 60.223 50.000 0.00 0.00 31.53 4.20
178 179 2.222596 GCTTCAATGCTTGTAGTCGTCG 60.223 50.000 0.00 0.00 31.53 5.12
179 180 1.346365 TCAATGCTTGTAGTCGTCGC 58.654 50.000 0.00 0.00 0.00 5.19
180 181 1.067846 TCAATGCTTGTAGTCGTCGCT 60.068 47.619 0.00 0.00 0.00 4.93
181 182 2.162809 TCAATGCTTGTAGTCGTCGCTA 59.837 45.455 0.00 0.00 0.00 4.26
182 183 2.476873 ATGCTTGTAGTCGTCGCTAG 57.523 50.000 0.00 0.00 0.00 3.42
183 184 1.445871 TGCTTGTAGTCGTCGCTAGA 58.554 50.000 0.00 0.00 0.00 2.43
184 185 2.014857 TGCTTGTAGTCGTCGCTAGAT 58.985 47.619 0.00 0.00 0.00 1.98
185 186 2.223272 TGCTTGTAGTCGTCGCTAGATG 60.223 50.000 0.00 0.00 34.75 2.90
186 187 2.855187 GCTTGTAGTCGTCGCTAGATGG 60.855 54.545 0.00 0.00 34.23 3.51
187 188 2.034104 TGTAGTCGTCGCTAGATGGT 57.966 50.000 0.00 0.00 34.23 3.55
188 189 1.938577 TGTAGTCGTCGCTAGATGGTC 59.061 52.381 0.00 0.00 34.23 4.02
189 190 2.211806 GTAGTCGTCGCTAGATGGTCT 58.788 52.381 0.00 0.00 34.23 3.85
190 191 2.616634 AGTCGTCGCTAGATGGTCTA 57.383 50.000 0.00 0.00 34.23 2.59
191 192 2.211806 AGTCGTCGCTAGATGGTCTAC 58.788 52.381 0.00 0.00 34.23 2.59
192 193 1.070710 GTCGTCGCTAGATGGTCTACG 60.071 57.143 0.00 0.00 34.23 3.51
193 194 0.235144 CGTCGCTAGATGGTCTACGG 59.765 60.000 0.00 0.00 30.31 4.02
194 195 1.590932 GTCGCTAGATGGTCTACGGA 58.409 55.000 0.00 0.00 30.31 4.69
195 196 2.152830 GTCGCTAGATGGTCTACGGAT 58.847 52.381 0.00 0.00 30.31 4.18
196 197 2.160022 GTCGCTAGATGGTCTACGGATC 59.840 54.545 0.00 0.00 30.31 3.36
197 198 2.038689 TCGCTAGATGGTCTACGGATCT 59.961 50.000 0.00 0.00 30.31 2.75
198 199 3.260128 TCGCTAGATGGTCTACGGATCTA 59.740 47.826 0.00 0.00 30.31 1.98
199 200 3.619483 CGCTAGATGGTCTACGGATCTAG 59.381 52.174 16.35 16.35 44.53 2.43
200 201 4.621038 CGCTAGATGGTCTACGGATCTAGA 60.621 50.000 21.02 0.00 44.51 2.43
201 202 5.433526 GCTAGATGGTCTACGGATCTAGAT 58.566 45.833 21.02 4.47 44.51 1.98
202 203 5.295787 GCTAGATGGTCTACGGATCTAGATG 59.704 48.000 21.02 0.00 44.51 2.90
203 204 5.249780 AGATGGTCTACGGATCTAGATGT 57.750 43.478 10.74 5.44 0.00 3.06
204 205 6.375830 AGATGGTCTACGGATCTAGATGTA 57.624 41.667 10.74 6.37 0.00 2.29
205 206 6.964464 AGATGGTCTACGGATCTAGATGTAT 58.036 40.000 10.74 0.00 0.00 2.29
206 207 7.406916 AGATGGTCTACGGATCTAGATGTATT 58.593 38.462 10.74 0.00 0.00 1.89
207 208 7.891183 AGATGGTCTACGGATCTAGATGTATTT 59.109 37.037 10.74 0.00 0.00 1.40
208 209 7.834881 TGGTCTACGGATCTAGATGTATTTT 57.165 36.000 10.74 0.00 0.00 1.82
209 210 8.246430 TGGTCTACGGATCTAGATGTATTTTT 57.754 34.615 10.74 0.00 0.00 1.94
238 239 8.819643 TTATTTTTAGTGTTGGTTGTATTGCC 57.180 30.769 0.00 0.00 0.00 4.52
239 240 5.854010 TTTTAGTGTTGGTTGTATTGCCA 57.146 34.783 0.00 0.00 0.00 4.92
240 241 6.412362 TTTTAGTGTTGGTTGTATTGCCAT 57.588 33.333 0.00 0.00 34.37 4.40
241 242 3.940209 AGTGTTGGTTGTATTGCCATG 57.060 42.857 0.00 0.00 34.37 3.66
242 243 3.495331 AGTGTTGGTTGTATTGCCATGA 58.505 40.909 0.00 0.00 34.37 3.07
243 244 4.088634 AGTGTTGGTTGTATTGCCATGAT 58.911 39.130 0.00 0.00 34.37 2.45
244 245 4.527816 AGTGTTGGTTGTATTGCCATGATT 59.472 37.500 0.00 0.00 34.37 2.57
245 246 4.626604 GTGTTGGTTGTATTGCCATGATTG 59.373 41.667 0.00 0.00 34.37 2.67
246 247 4.525874 TGTTGGTTGTATTGCCATGATTGA 59.474 37.500 0.00 0.00 34.37 2.57
247 248 5.011431 TGTTGGTTGTATTGCCATGATTGAA 59.989 36.000 0.00 0.00 34.37 2.69
248 249 5.735285 TGGTTGTATTGCCATGATTGAAA 57.265 34.783 0.00 0.00 0.00 2.69
249 250 6.106648 TGGTTGTATTGCCATGATTGAAAA 57.893 33.333 0.00 0.00 0.00 2.29
250 251 6.709281 TGGTTGTATTGCCATGATTGAAAAT 58.291 32.000 0.00 0.00 0.00 1.82
251 252 6.594547 TGGTTGTATTGCCATGATTGAAAATG 59.405 34.615 0.00 0.00 0.00 2.32
252 253 6.817641 GGTTGTATTGCCATGATTGAAAATGA 59.182 34.615 0.00 0.00 0.00 2.57
253 254 7.333921 GGTTGTATTGCCATGATTGAAAATGAA 59.666 33.333 0.00 0.00 0.00 2.57
254 255 8.885722 GTTGTATTGCCATGATTGAAAATGAAT 58.114 29.630 0.00 0.00 0.00 2.57
256 257 9.752961 TGTATTGCCATGATTGAAAATGAATAG 57.247 29.630 0.00 0.00 0.00 1.73
257 258 9.970395 GTATTGCCATGATTGAAAATGAATAGA 57.030 29.630 0.00 0.00 0.00 1.98
260 261 8.880878 TGCCATGATTGAAAATGAATAGATTG 57.119 30.769 0.00 0.00 0.00 2.67
261 262 8.697292 TGCCATGATTGAAAATGAATAGATTGA 58.303 29.630 0.00 0.00 0.00 2.57
262 263 9.537192 GCCATGATTGAAAATGAATAGATTGAA 57.463 29.630 0.00 0.00 0.00 2.69
307 308 7.865706 AAAACATACAGGAACAGGATATCAC 57.134 36.000 4.83 0.00 0.00 3.06
308 309 6.814954 AACATACAGGAACAGGATATCACT 57.185 37.500 4.83 0.00 0.00 3.41
309 310 6.166984 ACATACAGGAACAGGATATCACTG 57.833 41.667 15.59 15.59 41.64 3.66
317 318 4.946478 ACAGGATATCACTGTCTTAGGC 57.054 45.455 16.59 0.00 45.50 3.93
318 319 4.551671 ACAGGATATCACTGTCTTAGGCT 58.448 43.478 16.59 0.00 45.50 4.58
319 320 4.586841 ACAGGATATCACTGTCTTAGGCTC 59.413 45.833 16.59 0.00 45.50 4.70
320 321 3.823873 AGGATATCACTGTCTTAGGCTCG 59.176 47.826 4.83 0.00 0.00 5.03
321 322 3.057174 GGATATCACTGTCTTAGGCTCGG 60.057 52.174 4.83 0.00 0.00 4.63
322 323 2.145397 ATCACTGTCTTAGGCTCGGA 57.855 50.000 0.00 0.00 0.00 4.55
323 324 1.919240 TCACTGTCTTAGGCTCGGAA 58.081 50.000 0.00 0.00 0.00 4.30
324 325 2.244695 TCACTGTCTTAGGCTCGGAAA 58.755 47.619 0.00 0.00 0.00 3.13
325 326 2.631062 TCACTGTCTTAGGCTCGGAAAA 59.369 45.455 0.00 0.00 0.00 2.29
326 327 2.737252 CACTGTCTTAGGCTCGGAAAAC 59.263 50.000 0.00 0.00 0.00 2.43
327 328 2.633481 ACTGTCTTAGGCTCGGAAAACT 59.367 45.455 0.00 0.00 0.00 2.66
328 329 3.830755 ACTGTCTTAGGCTCGGAAAACTA 59.169 43.478 0.00 0.00 0.00 2.24
329 330 4.082136 ACTGTCTTAGGCTCGGAAAACTAG 60.082 45.833 0.00 0.00 0.00 2.57
330 331 3.194968 TGTCTTAGGCTCGGAAAACTAGG 59.805 47.826 0.00 0.00 0.00 3.02
331 332 2.167900 TCTTAGGCTCGGAAAACTAGGC 59.832 50.000 0.00 0.00 37.67 3.93
332 333 1.563924 TAGGCTCGGAAAACTAGGCA 58.436 50.000 0.00 0.00 39.56 4.75
333 334 0.690762 AGGCTCGGAAAACTAGGCAA 59.309 50.000 0.00 0.00 39.56 4.52
334 335 1.282157 AGGCTCGGAAAACTAGGCAAT 59.718 47.619 0.00 0.00 39.56 3.56
335 336 2.092323 GGCTCGGAAAACTAGGCAATT 58.908 47.619 0.00 0.00 37.39 2.32
336 337 2.492088 GGCTCGGAAAACTAGGCAATTT 59.508 45.455 0.00 0.00 37.39 1.82
337 338 3.692593 GGCTCGGAAAACTAGGCAATTTA 59.307 43.478 0.00 0.00 37.39 1.40
338 339 4.157105 GGCTCGGAAAACTAGGCAATTTAA 59.843 41.667 0.00 0.00 37.39 1.52
339 340 5.163550 GGCTCGGAAAACTAGGCAATTTAAT 60.164 40.000 0.00 0.00 37.39 1.40
340 341 6.330278 GCTCGGAAAACTAGGCAATTTAATT 58.670 36.000 0.00 0.00 0.00 1.40
341 342 7.415877 GGCTCGGAAAACTAGGCAATTTAATTA 60.416 37.037 0.00 0.00 37.39 1.40
342 343 7.971722 GCTCGGAAAACTAGGCAATTTAATTAA 59.028 33.333 0.00 0.00 0.00 1.40
343 344 9.503427 CTCGGAAAACTAGGCAATTTAATTAAG 57.497 33.333 0.00 0.00 0.00 1.85
344 345 7.971722 TCGGAAAACTAGGCAATTTAATTAAGC 59.028 33.333 0.00 0.00 0.00 3.09
345 346 7.757624 CGGAAAACTAGGCAATTTAATTAAGCA 59.242 33.333 9.38 0.00 0.00 3.91
346 347 9.430623 GGAAAACTAGGCAATTTAATTAAGCAA 57.569 29.630 9.38 0.00 0.00 3.91
393 394 8.974060 TGTAACTTGTATTTGATAATCCCTCC 57.026 34.615 0.00 0.00 0.00 4.30
394 395 7.713507 TGTAACTTGTATTTGATAATCCCTCCG 59.286 37.037 0.00 0.00 0.00 4.63
395 396 6.248569 ACTTGTATTTGATAATCCCTCCGT 57.751 37.500 0.00 0.00 0.00 4.69
396 397 6.659824 ACTTGTATTTGATAATCCCTCCGTT 58.340 36.000 0.00 0.00 0.00 4.44
397 398 7.116736 ACTTGTATTTGATAATCCCTCCGTTT 58.883 34.615 0.00 0.00 0.00 3.60
398 399 7.282450 ACTTGTATTTGATAATCCCTCCGTTTC 59.718 37.037 0.00 0.00 0.00 2.78
399 400 6.654959 TGTATTTGATAATCCCTCCGTTTCA 58.345 36.000 0.00 0.00 0.00 2.69
400 401 6.765989 TGTATTTGATAATCCCTCCGTTTCAG 59.234 38.462 0.00 0.00 0.00 3.02
401 402 4.837093 TTGATAATCCCTCCGTTTCAGT 57.163 40.909 0.00 0.00 0.00 3.41
402 403 4.837093 TGATAATCCCTCCGTTTCAGTT 57.163 40.909 0.00 0.00 0.00 3.16
403 404 5.174037 TGATAATCCCTCCGTTTCAGTTT 57.826 39.130 0.00 0.00 0.00 2.66
404 405 6.302535 TGATAATCCCTCCGTTTCAGTTTA 57.697 37.500 0.00 0.00 0.00 2.01
405 406 6.110707 TGATAATCCCTCCGTTTCAGTTTAC 58.889 40.000 0.00 0.00 0.00 2.01
406 407 4.360951 AATCCCTCCGTTTCAGTTTACA 57.639 40.909 0.00 0.00 0.00 2.41
407 408 3.842007 TCCCTCCGTTTCAGTTTACAA 57.158 42.857 0.00 0.00 0.00 2.41
408 409 3.735591 TCCCTCCGTTTCAGTTTACAAG 58.264 45.455 0.00 0.00 0.00 3.16
409 410 3.135167 TCCCTCCGTTTCAGTTTACAAGT 59.865 43.478 0.00 0.00 0.00 3.16
410 411 3.497262 CCCTCCGTTTCAGTTTACAAGTC 59.503 47.826 0.00 0.00 0.00 3.01
411 412 4.124238 CCTCCGTTTCAGTTTACAAGTCA 58.876 43.478 0.00 0.00 0.00 3.41
412 413 4.755123 CCTCCGTTTCAGTTTACAAGTCAT 59.245 41.667 0.00 0.00 0.00 3.06
413 414 5.334105 CCTCCGTTTCAGTTTACAAGTCATG 60.334 44.000 0.00 0.00 0.00 3.07
414 415 4.024387 TCCGTTTCAGTTTACAAGTCATGC 60.024 41.667 0.00 0.00 0.00 4.06
415 416 4.260990 CCGTTTCAGTTTACAAGTCATGCA 60.261 41.667 0.00 0.00 0.00 3.96
416 417 4.670621 CGTTTCAGTTTACAAGTCATGCAC 59.329 41.667 0.00 0.00 0.00 4.57
417 418 4.466567 TTCAGTTTACAAGTCATGCACG 57.533 40.909 0.00 0.00 0.00 5.34
418 419 3.462982 TCAGTTTACAAGTCATGCACGT 58.537 40.909 0.00 0.00 0.00 4.49
419 420 4.623002 TCAGTTTACAAGTCATGCACGTA 58.377 39.130 0.00 0.00 0.00 3.57
420 421 5.234752 TCAGTTTACAAGTCATGCACGTAT 58.765 37.500 0.00 0.00 0.00 3.06
421 422 6.391537 TCAGTTTACAAGTCATGCACGTATA 58.608 36.000 0.00 0.00 0.00 1.47
422 423 6.309494 TCAGTTTACAAGTCATGCACGTATAC 59.691 38.462 0.00 0.00 0.00 1.47
423 424 5.579511 AGTTTACAAGTCATGCACGTATACC 59.420 40.000 0.00 0.00 0.00 2.73
424 425 3.887621 ACAAGTCATGCACGTATACCT 57.112 42.857 0.00 0.00 0.00 3.08
425 426 4.994907 ACAAGTCATGCACGTATACCTA 57.005 40.909 0.00 0.00 0.00 3.08
426 427 4.933330 ACAAGTCATGCACGTATACCTAG 58.067 43.478 0.00 0.00 0.00 3.02
427 428 4.202121 ACAAGTCATGCACGTATACCTAGG 60.202 45.833 7.41 7.41 0.00 3.02
428 429 3.563223 AGTCATGCACGTATACCTAGGT 58.437 45.455 20.57 20.57 0.00 3.08
429 430 3.958798 AGTCATGCACGTATACCTAGGTT 59.041 43.478 22.11 10.62 0.00 3.50
430 431 4.049186 GTCATGCACGTATACCTAGGTTG 58.951 47.826 22.11 13.07 0.00 3.77
431 432 2.589798 TGCACGTATACCTAGGTTGC 57.410 50.000 22.11 22.73 0.00 4.17
432 433 1.137479 TGCACGTATACCTAGGTTGCC 59.863 52.381 25.61 12.09 0.00 4.52
433 434 1.137479 GCACGTATACCTAGGTTGCCA 59.863 52.381 22.11 1.21 0.00 4.92
434 435 2.419021 GCACGTATACCTAGGTTGCCAA 60.419 50.000 22.11 0.75 0.00 4.52
435 436 3.743269 GCACGTATACCTAGGTTGCCAAT 60.743 47.826 22.11 9.64 0.00 3.16
436 437 4.448210 CACGTATACCTAGGTTGCCAATT 58.552 43.478 22.11 0.00 0.00 2.32
437 438 4.879545 CACGTATACCTAGGTTGCCAATTT 59.120 41.667 22.11 0.00 0.00 1.82
438 439 5.355910 CACGTATACCTAGGTTGCCAATTTT 59.644 40.000 22.11 0.00 0.00 1.82
439 440 5.355910 ACGTATACCTAGGTTGCCAATTTTG 59.644 40.000 22.11 3.23 0.00 2.44
440 441 5.355910 CGTATACCTAGGTTGCCAATTTTGT 59.644 40.000 22.11 0.00 0.00 2.83
441 442 5.914898 ATACCTAGGTTGCCAATTTTGTC 57.085 39.130 22.11 0.00 0.00 3.18
442 443 3.571590 ACCTAGGTTGCCAATTTTGTCA 58.428 40.909 9.21 0.00 0.00 3.58
443 444 3.320826 ACCTAGGTTGCCAATTTTGTCAC 59.679 43.478 9.21 0.00 0.00 3.67
444 445 2.908688 AGGTTGCCAATTTTGTCACC 57.091 45.000 0.00 0.00 0.00 4.02
445 446 1.416030 AGGTTGCCAATTTTGTCACCC 59.584 47.619 0.00 0.00 0.00 4.61
446 447 1.416030 GGTTGCCAATTTTGTCACCCT 59.584 47.619 0.00 0.00 0.00 4.34
447 448 2.630580 GGTTGCCAATTTTGTCACCCTA 59.369 45.455 0.00 0.00 0.00 3.53
448 449 3.070302 GGTTGCCAATTTTGTCACCCTAA 59.930 43.478 0.00 0.00 0.00 2.69
449 450 4.262851 GGTTGCCAATTTTGTCACCCTAAT 60.263 41.667 0.00 0.00 0.00 1.73
450 451 5.046950 GGTTGCCAATTTTGTCACCCTAATA 60.047 40.000 0.00 0.00 0.00 0.98
451 452 6.351796 GGTTGCCAATTTTGTCACCCTAATAT 60.352 38.462 0.00 0.00 0.00 1.28
452 453 7.147811 GGTTGCCAATTTTGTCACCCTAATATA 60.148 37.037 0.00 0.00 0.00 0.86
453 454 7.962995 TGCCAATTTTGTCACCCTAATATAA 57.037 32.000 0.00 0.00 0.00 0.98
454 455 8.546083 TGCCAATTTTGTCACCCTAATATAAT 57.454 30.769 0.00 0.00 0.00 1.28
455 456 8.637986 TGCCAATTTTGTCACCCTAATATAATC 58.362 33.333 0.00 0.00 0.00 1.75
456 457 8.860088 GCCAATTTTGTCACCCTAATATAATCT 58.140 33.333 0.00 0.00 0.00 2.40
555 556 9.513906 TGACTTGTATTAGATTGGTCAAATTGA 57.486 29.630 0.00 0.00 30.81 2.57
556 557 9.774742 GACTTGTATTAGATTGGTCAAATTGAC 57.225 33.333 17.16 17.16 46.23 3.18
570 571 5.681982 GTCAAATTGACGACCTAGAGATACG 59.318 44.000 10.58 0.00 37.67 3.06
571 572 3.900388 ATTGACGACCTAGAGATACGC 57.100 47.619 0.00 0.00 0.00 4.42
572 573 2.320745 TGACGACCTAGAGATACGCA 57.679 50.000 0.00 0.00 0.00 5.24
573 574 1.938577 TGACGACCTAGAGATACGCAC 59.061 52.381 0.00 0.00 0.00 5.34
574 575 1.938577 GACGACCTAGAGATACGCACA 59.061 52.381 0.00 0.00 0.00 4.57
575 576 1.669779 ACGACCTAGAGATACGCACAC 59.330 52.381 0.00 0.00 0.00 3.82
577 578 0.381089 ACCTAGAGATACGCACACGC 59.619 55.000 0.00 0.00 45.53 5.34
578 579 0.317938 CCTAGAGATACGCACACGCC 60.318 60.000 0.00 0.00 45.53 5.68
579 580 0.317938 CTAGAGATACGCACACGCCC 60.318 60.000 0.00 0.00 45.53 6.13
580 581 0.750546 TAGAGATACGCACACGCCCT 60.751 55.000 0.00 0.00 45.53 5.19
581 582 0.750546 AGAGATACGCACACGCCCTA 60.751 55.000 0.00 0.00 45.53 3.53
582 583 0.314302 GAGATACGCACACGCCCTAT 59.686 55.000 0.00 0.00 45.53 2.57
583 584 1.538512 GAGATACGCACACGCCCTATA 59.461 52.381 0.00 0.00 45.53 1.31
584 585 1.958579 AGATACGCACACGCCCTATAA 59.041 47.619 0.00 0.00 45.53 0.98
585 586 2.363038 AGATACGCACACGCCCTATAAA 59.637 45.455 0.00 0.00 45.53 1.40
586 587 2.894763 TACGCACACGCCCTATAAAT 57.105 45.000 0.00 0.00 45.53 1.40
587 588 2.032680 ACGCACACGCCCTATAAATT 57.967 45.000 0.00 0.00 45.53 1.82
588 589 1.668751 ACGCACACGCCCTATAAATTG 59.331 47.619 0.00 0.00 45.53 2.32
589 590 1.937223 CGCACACGCCCTATAAATTGA 59.063 47.619 0.00 0.00 33.11 2.57
590 591 2.032894 CGCACACGCCCTATAAATTGAG 60.033 50.000 0.00 0.00 33.11 3.02
591 592 3.202906 GCACACGCCCTATAAATTGAGA 58.797 45.455 0.00 0.00 0.00 3.27
592 593 3.248602 GCACACGCCCTATAAATTGAGAG 59.751 47.826 0.00 0.00 0.00 3.20
593 594 4.693283 CACACGCCCTATAAATTGAGAGA 58.307 43.478 0.00 0.00 0.00 3.10
594 595 4.747108 CACACGCCCTATAAATTGAGAGAG 59.253 45.833 0.00 0.00 0.00 3.20
595 596 4.649674 ACACGCCCTATAAATTGAGAGAGA 59.350 41.667 0.00 0.00 0.00 3.10
596 597 5.305644 ACACGCCCTATAAATTGAGAGAGAT 59.694 40.000 0.00 0.00 0.00 2.75
597 598 5.636965 CACGCCCTATAAATTGAGAGAGATG 59.363 44.000 0.00 0.00 0.00 2.90
598 599 5.174395 CGCCCTATAAATTGAGAGAGATGG 58.826 45.833 0.00 0.00 0.00 3.51
599 600 5.047021 CGCCCTATAAATTGAGAGAGATGGA 60.047 44.000 0.00 0.00 0.00 3.41
600 601 6.405538 GCCCTATAAATTGAGAGAGATGGAG 58.594 44.000 0.00 0.00 0.00 3.86
614 615 4.530161 AGAGATGGAGTATGAATACAGGGC 59.470 45.833 3.43 0.00 35.74 5.19
677 678 3.336138 TGTGTGTGAACTTGGTGTACA 57.664 42.857 0.00 0.00 0.00 2.90
789 797 2.202987 CGCTAAGCCTGCTGGAGG 60.203 66.667 14.77 11.32 46.13 4.30
840 849 2.574212 GCAAAATCGCTGCCGTCG 60.574 61.111 0.00 0.00 33.51 5.12
961 971 4.227134 CGCCACCCTCCAGATCCG 62.227 72.222 0.00 0.00 0.00 4.18
1317 1345 0.965439 CCCTCCCTTGCTAGATCTCG 59.035 60.000 0.00 0.00 0.00 4.04
1319 1347 2.035632 CCTCCCTTGCTAGATCTCGTT 58.964 52.381 0.00 0.00 0.00 3.85
1321 1349 3.118592 CCTCCCTTGCTAGATCTCGTTTT 60.119 47.826 0.00 0.00 0.00 2.43
1322 1350 4.508662 CTCCCTTGCTAGATCTCGTTTTT 58.491 43.478 0.00 0.00 0.00 1.94
1436 1508 1.064208 TCGCGTTTGCTTGCTTGTTTA 59.936 42.857 5.77 0.00 39.65 2.01
1535 1623 1.942657 CGTGCATCCACCCTATTTCAG 59.057 52.381 0.00 0.00 38.79 3.02
1756 1850 7.700656 CAGTAACAAAAGTTTTGACCTAACCAG 59.299 37.037 30.20 13.42 0.00 4.00
1831 1925 3.433615 GTCATGTACTTCCTTCACTGCAC 59.566 47.826 0.00 0.00 0.00 4.57
1832 1926 2.543777 TGTACTTCCTTCACTGCACC 57.456 50.000 0.00 0.00 0.00 5.01
2062 2162 1.519455 GAGGAGATGGCCGTTGACG 60.519 63.158 0.00 0.00 39.44 4.35
2067 2167 1.447140 GATGGCCGTTGACGTGCTA 60.447 57.895 0.00 9.92 36.36 3.49
2121 2221 6.884295 TGGAGAAGAACTCTGAGAAAAACAAA 59.116 34.615 12.44 0.00 44.37 2.83
2129 2229 5.127682 ACTCTGAGAAAAACAAAAGCACCAT 59.872 36.000 12.44 0.00 0.00 3.55
2152 2252 1.205893 CGAAGGGTGAGGAAGAGAAGG 59.794 57.143 0.00 0.00 0.00 3.46
2206 2312 0.908198 GGTGGAGGCAGATGAGAGTT 59.092 55.000 0.00 0.00 0.00 3.01
2250 2366 0.523072 GCAAGCAGAATGAAAGGCGA 59.477 50.000 0.00 0.00 39.69 5.54
2537 2656 3.423645 GCTGACGAAGAAAATCAAGTCGG 60.424 47.826 0.00 0.00 37.86 4.79
2541 2660 3.064207 CGAAGAAAATCAAGTCGGGTCA 58.936 45.455 0.00 0.00 0.00 4.02
2559 2678 5.624509 CGGGTCAGAGTCAGAATACATTGAA 60.625 44.000 0.00 0.00 0.00 2.69
2570 2689 7.121315 GTCAGAATACATTGAAAAGCCTAGGTT 59.879 37.037 11.31 0.00 0.00 3.50
2580 2699 1.183549 AGCCTAGGTTCGACGATTGT 58.816 50.000 11.31 0.00 0.00 2.71
2596 2715 5.906073 ACGATTGTACTGATGTCATGATCA 58.094 37.500 0.00 0.00 0.00 2.92
2615 2734 0.885879 ACTGGCTACGACGATGACAA 59.114 50.000 0.00 0.00 0.00 3.18
2619 2738 1.402456 GGCTACGACGATGACAACAGT 60.402 52.381 0.00 0.00 0.00 3.55
2637 2756 2.106566 AGTGATGAAGACTCGCCTGAT 58.893 47.619 0.00 0.00 0.00 2.90
2674 2793 0.321298 TAAGGTGAGCAAGAACCCGC 60.321 55.000 0.00 0.00 37.13 6.13
2688 2807 2.602676 CCCGCCAAAGAAGAGGGGA 61.603 63.158 0.00 0.00 40.00 4.81
2698 2817 3.207044 AGAAGAGGGGAAAGAAGCCTA 57.793 47.619 0.00 0.00 0.00 3.93
2761 2880 0.249447 TCGCACTTGTGTCTCTGTGG 60.249 55.000 2.61 0.00 0.00 4.17
2762 2881 1.835483 CGCACTTGTGTCTCTGTGGC 61.835 60.000 2.61 0.00 0.00 5.01
2763 2882 0.815213 GCACTTGTGTCTCTGTGGCA 60.815 55.000 2.61 0.00 0.00 4.92
2764 2883 1.888215 CACTTGTGTCTCTGTGGCAT 58.112 50.000 0.00 0.00 30.58 4.40
2765 2884 1.534163 CACTTGTGTCTCTGTGGCATG 59.466 52.381 0.00 0.00 30.58 4.06
2766 2885 1.141657 ACTTGTGTCTCTGTGGCATGT 59.858 47.619 0.00 0.00 30.58 3.21
2810 2935 8.752005 ACTATATGGATATTTTGTTGCACTGT 57.248 30.769 0.00 0.00 0.00 3.55
2839 2964 0.320374 GTGGTACTGTGGTGCTAGCA 59.680 55.000 14.93 14.93 0.00 3.49
2844 2969 0.883833 ACTGTGGTGCTAGCATTTGC 59.116 50.000 22.51 7.67 42.49 3.68
2973 4046 8.723942 TGGTTTATTTGTTTATTTTGTGCAGT 57.276 26.923 0.00 0.00 0.00 4.40
2983 4056 8.973378 TGTTTATTTTGTGCAGTTAGTTTATGC 58.027 29.630 0.00 0.00 40.40 3.14
2992 4065 4.858692 GCAGTTAGTTTATGCAATGGTGTG 59.141 41.667 0.00 0.00 39.75 3.82
3010 4083 1.202348 GTGTGCTAGGCATTTGGTTCC 59.798 52.381 0.00 0.00 41.91 3.62
3028 4101 4.399303 GGTTCCTGAAAACCGATGAATGAT 59.601 41.667 0.00 0.00 39.40 2.45
3037 4110 4.487714 ACCGATGAATGATTGTGGTACT 57.512 40.909 0.00 0.00 0.00 2.73
3038 4111 4.191544 ACCGATGAATGATTGTGGTACTG 58.808 43.478 0.00 0.00 0.00 2.74
3046 4119 2.290260 TGATTGTGGTACTGGGCTCAAG 60.290 50.000 0.00 0.00 0.00 3.02
3055 4128 1.306141 TGGGCTCAAGGAGACGGAT 60.306 57.895 0.00 0.00 38.87 4.18
3131 4204 8.055279 ACAGAATAAACCACGATTCATTGAAT 57.945 30.769 11.64 11.64 35.00 2.57
3219 4293 6.074463 CGGCGACACTCTATACCTTATTTTTC 60.074 42.308 0.00 0.00 0.00 2.29
3220 4294 6.074463 GGCGACACTCTATACCTTATTTTTCG 60.074 42.308 0.00 0.00 0.00 3.46
3227 4303 9.939802 ACTCTATACCTTATTTTTCGAACAACT 57.060 29.630 0.00 0.00 0.00 3.16
3229 4305 9.374838 TCTATACCTTATTTTTCGAACAACTCC 57.625 33.333 0.00 0.00 0.00 3.85
3235 4311 0.942410 TTTCGAACAACTCCGCCTCG 60.942 55.000 0.00 0.00 0.00 4.63
3243 4319 2.224113 ACAACTCCGCCTCGAAAACTAA 60.224 45.455 0.00 0.00 0.00 2.24
3261 4337 9.269453 GAAAACTAATACAGGAAGCGGTATAAT 57.731 33.333 0.00 0.00 30.37 1.28
3267 4343 5.347620 ACAGGAAGCGGTATAATACAACA 57.652 39.130 0.00 0.00 0.00 3.33
3279 4355 8.559536 CGGTATAATACAACAGAAAAGCATGAT 58.440 33.333 0.00 0.00 0.00 2.45
3286 4362 3.093814 ACAGAAAAGCATGATGATGGCA 58.906 40.909 0.00 0.00 0.00 4.92
3328 4404 3.482156 CCATTGGGTCAGATCCTAGTG 57.518 52.381 0.07 0.00 0.00 2.74
3348 4424 2.004583 CGCACTCACGGAATCCTTAA 57.995 50.000 0.00 0.00 0.00 1.85
3361 4437 6.040878 CGGAATCCTTAACTACGACATCTTT 58.959 40.000 0.00 0.00 0.00 2.52
3369 4445 7.168302 CCTTAACTACGACATCTTTAGCATCTG 59.832 40.741 0.00 0.00 0.00 2.90
3388 4464 1.188863 GGCATGAAAAGGCAGGTGAT 58.811 50.000 0.00 0.00 0.00 3.06
3391 4467 3.429410 GGCATGAAAAGGCAGGTGATTAC 60.429 47.826 0.00 0.00 0.00 1.89
3399 4475 5.649782 AAGGCAGGTGATTACTTTGAATG 57.350 39.130 0.00 0.00 0.00 2.67
3413 4489 3.319137 TTGAATGTACTCGCAAGCTCT 57.681 42.857 0.00 0.00 37.18 4.09
3441 4517 2.553086 TCCAAAAAGCAAGCAAGCAAG 58.447 42.857 3.19 0.00 36.85 4.01
3442 4518 1.003223 CCAAAAAGCAAGCAAGCAAGC 60.003 47.619 3.19 0.00 36.85 4.01
3452 4528 2.421619 AGCAAGCAAGCTCTAGAACAC 58.578 47.619 0.00 0.00 42.18 3.32
3474 4550 6.183360 ACACATCAATCGAAAAGAAACAGGTT 60.183 34.615 0.00 0.00 0.00 3.50
3524 4600 8.485976 AGTTCTAACTGAAGCAAATACTCATC 57.514 34.615 0.00 0.00 37.98 2.92
3527 4603 3.599343 ACTGAAGCAAATACTCATCGCA 58.401 40.909 0.00 0.00 0.00 5.10
3533 4609 4.383173 AGCAAATACTCATCGCATGATCA 58.617 39.130 0.00 0.00 38.85 2.92
3538 4614 7.804600 GCAAATACTCATCGCATGATCATTTAA 59.195 33.333 5.16 0.00 38.85 1.52
3542 4618 7.268199 ACTCATCGCATGATCATTTAACATT 57.732 32.000 5.16 0.00 38.85 2.71
3543 4619 7.136772 ACTCATCGCATGATCATTTAACATTG 58.863 34.615 5.16 0.00 38.85 2.82
3577 4653 0.540365 CAGCATAATCCCCGGCCATT 60.540 55.000 2.24 0.00 0.00 3.16
3579 4655 1.586154 GCATAATCCCCGGCCATTCG 61.586 60.000 2.24 0.00 0.00 3.34
3583 4659 0.537371 AATCCCCGGCCATTCGATTC 60.537 55.000 2.24 0.00 0.00 2.52
3602 4678 0.457851 CACTTCTCCTAGCCACCTCG 59.542 60.000 0.00 0.00 0.00 4.63
3625 4701 0.469144 TCAACCCAACTTTCCCTGGC 60.469 55.000 0.00 0.00 0.00 4.85
3687 4768 8.414003 TGACCTGATCATATAGTGTGACTTAAC 58.586 37.037 0.00 0.00 29.99 2.01
3713 4798 1.919240 TGTGTCCCACTATGACTCGT 58.081 50.000 0.00 0.00 35.11 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.897966 TGAAGAGTAGTGTAGATTGGAAGGAT 59.102 38.462 0.00 0.00 0.00 3.24
5 6 6.531503 TGAAGAGTAGTGTAGATTGGAAGG 57.468 41.667 0.00 0.00 0.00 3.46
7 8 6.183360 CCGATGAAGAGTAGTGTAGATTGGAA 60.183 42.308 0.00 0.00 0.00 3.53
9 10 5.524284 CCGATGAAGAGTAGTGTAGATTGG 58.476 45.833 0.00 0.00 0.00 3.16
10 11 4.979197 GCCGATGAAGAGTAGTGTAGATTG 59.021 45.833 0.00 0.00 0.00 2.67
11 12 4.261238 CGCCGATGAAGAGTAGTGTAGATT 60.261 45.833 0.00 0.00 0.00 2.40
12 13 3.251245 CGCCGATGAAGAGTAGTGTAGAT 59.749 47.826 0.00 0.00 0.00 1.98
14 15 2.287069 CCGCCGATGAAGAGTAGTGTAG 60.287 54.545 0.00 0.00 0.00 2.74
16 17 0.456221 CCGCCGATGAAGAGTAGTGT 59.544 55.000 0.00 0.00 0.00 3.55
17 18 0.872021 GCCGCCGATGAAGAGTAGTG 60.872 60.000 0.00 0.00 0.00 2.74
18 19 1.437986 GCCGCCGATGAAGAGTAGT 59.562 57.895 0.00 0.00 0.00 2.73
19 20 1.658717 CGCCGCCGATGAAGAGTAG 60.659 63.158 0.00 0.00 36.29 2.57
20 21 2.411701 CGCCGCCGATGAAGAGTA 59.588 61.111 0.00 0.00 36.29 2.59
21 22 4.514577 CCGCCGCCGATGAAGAGT 62.515 66.667 0.00 0.00 36.29 3.24
22 23 4.514577 ACCGCCGCCGATGAAGAG 62.515 66.667 0.00 0.00 36.29 2.85
23 24 4.077184 AACCGCCGCCGATGAAGA 62.077 61.111 0.00 0.00 36.29 2.87
24 25 3.864686 CAACCGCCGCCGATGAAG 61.865 66.667 0.00 0.00 36.29 3.02
25 26 2.783241 TAACAACCGCCGCCGATGAA 62.783 55.000 0.00 0.00 36.29 2.57
26 27 2.581208 ATAACAACCGCCGCCGATGA 62.581 55.000 0.00 0.00 36.29 2.92
27 28 1.711060 AATAACAACCGCCGCCGATG 61.711 55.000 0.00 0.00 36.29 3.84
28 29 1.433837 GAATAACAACCGCCGCCGAT 61.434 55.000 0.00 0.00 36.29 4.18
29 30 2.047083 AATAACAACCGCCGCCGA 60.047 55.556 0.00 0.00 36.29 5.54
30 31 0.806884 TAGAATAACAACCGCCGCCG 60.807 55.000 0.00 0.00 0.00 6.46
31 32 0.654160 GTAGAATAACAACCGCCGCC 59.346 55.000 0.00 0.00 0.00 6.13
32 33 1.326548 CAGTAGAATAACAACCGCCGC 59.673 52.381 0.00 0.00 0.00 6.53
33 34 1.326548 GCAGTAGAATAACAACCGCCG 59.673 52.381 0.00 0.00 0.00 6.46
34 35 1.326548 CGCAGTAGAATAACAACCGCC 59.673 52.381 0.00 0.00 0.00 6.13
35 36 1.326548 CCGCAGTAGAATAACAACCGC 59.673 52.381 0.00 0.00 0.00 5.68
36 37 1.931172 CCCGCAGTAGAATAACAACCG 59.069 52.381 0.00 0.00 0.00 4.44
37 38 2.934553 GACCCGCAGTAGAATAACAACC 59.065 50.000 0.00 0.00 0.00 3.77
38 39 2.934553 GGACCCGCAGTAGAATAACAAC 59.065 50.000 0.00 0.00 0.00 3.32
39 40 2.835764 AGGACCCGCAGTAGAATAACAA 59.164 45.455 0.00 0.00 0.00 2.83
40 41 2.463752 AGGACCCGCAGTAGAATAACA 58.536 47.619 0.00 0.00 0.00 2.41
41 42 4.557205 CATAGGACCCGCAGTAGAATAAC 58.443 47.826 0.00 0.00 0.00 1.89
42 43 3.576982 CCATAGGACCCGCAGTAGAATAA 59.423 47.826 0.00 0.00 0.00 1.40
43 44 3.162666 CCATAGGACCCGCAGTAGAATA 58.837 50.000 0.00 0.00 0.00 1.75
44 45 1.971357 CCATAGGACCCGCAGTAGAAT 59.029 52.381 0.00 0.00 0.00 2.40
45 46 1.410004 CCATAGGACCCGCAGTAGAA 58.590 55.000 0.00 0.00 0.00 2.10
46 47 0.469331 CCCATAGGACCCGCAGTAGA 60.469 60.000 0.00 0.00 33.47 2.59
47 48 1.472662 CCCCATAGGACCCGCAGTAG 61.473 65.000 0.00 0.00 38.24 2.57
48 49 1.458777 CCCCATAGGACCCGCAGTA 60.459 63.158 0.00 0.00 38.24 2.74
49 50 2.768344 CCCCATAGGACCCGCAGT 60.768 66.667 0.00 0.00 38.24 4.40
50 51 4.256180 GCCCCATAGGACCCGCAG 62.256 72.222 0.00 0.00 38.24 5.18
57 58 1.407656 CGTGCTAAGGCCCCATAGGA 61.408 60.000 0.00 0.00 38.24 2.94
58 59 1.071471 CGTGCTAAGGCCCCATAGG 59.929 63.158 0.00 0.00 37.74 2.57
59 60 0.249911 GTCGTGCTAAGGCCCCATAG 60.250 60.000 0.00 0.67 37.74 2.23
60 61 1.827394 GTCGTGCTAAGGCCCCATA 59.173 57.895 0.00 0.00 37.74 2.74
61 62 2.590092 GTCGTGCTAAGGCCCCAT 59.410 61.111 0.00 0.00 37.74 4.00
62 63 4.077184 CGTCGTGCTAAGGCCCCA 62.077 66.667 0.00 0.00 37.74 4.96
63 64 3.766691 TCGTCGTGCTAAGGCCCC 61.767 66.667 0.00 0.00 37.74 5.80
64 65 2.502692 AAGTCGTCGTGCTAAGGCCC 62.503 60.000 0.00 0.00 37.74 5.80
65 66 1.077089 GAAGTCGTCGTGCTAAGGCC 61.077 60.000 0.00 0.00 37.74 5.19
66 67 1.077089 GGAAGTCGTCGTGCTAAGGC 61.077 60.000 0.00 0.00 39.26 4.35
67 68 0.526662 AGGAAGTCGTCGTGCTAAGG 59.473 55.000 0.00 0.00 0.00 2.69
68 69 1.199327 TCAGGAAGTCGTCGTGCTAAG 59.801 52.381 3.89 0.00 41.11 2.18
69 70 1.068748 GTCAGGAAGTCGTCGTGCTAA 60.069 52.381 3.89 0.00 41.11 3.09
70 71 0.520404 GTCAGGAAGTCGTCGTGCTA 59.480 55.000 3.89 0.00 41.11 3.49
71 72 1.173444 AGTCAGGAAGTCGTCGTGCT 61.173 55.000 3.89 2.68 41.11 4.40
72 73 1.004277 CAGTCAGGAAGTCGTCGTGC 61.004 60.000 3.89 0.70 41.11 5.34
73 74 0.311165 ACAGTCAGGAAGTCGTCGTG 59.689 55.000 2.49 2.49 42.41 4.35
74 75 1.534595 GTACAGTCAGGAAGTCGTCGT 59.465 52.381 0.00 0.00 0.00 4.34
75 76 1.805345 AGTACAGTCAGGAAGTCGTCG 59.195 52.381 0.00 0.00 0.00 5.12
76 77 3.750130 TGTAGTACAGTCAGGAAGTCGTC 59.250 47.826 0.00 0.00 0.00 4.20
77 78 3.748083 TGTAGTACAGTCAGGAAGTCGT 58.252 45.455 0.00 0.00 0.00 4.34
78 79 4.023450 TGTTGTAGTACAGTCAGGAAGTCG 60.023 45.833 2.68 0.00 0.00 4.18
79 80 5.449107 TGTTGTAGTACAGTCAGGAAGTC 57.551 43.478 2.68 0.00 0.00 3.01
80 81 5.363005 ACTTGTTGTAGTACAGTCAGGAAGT 59.637 40.000 18.87 12.93 0.00 3.01
81 82 5.844004 ACTTGTTGTAGTACAGTCAGGAAG 58.156 41.667 18.87 12.51 0.00 3.46
82 83 5.864418 ACTTGTTGTAGTACAGTCAGGAA 57.136 39.130 18.87 0.00 0.00 3.36
83 84 5.864418 AACTTGTTGTAGTACAGTCAGGA 57.136 39.130 18.87 0.00 0.00 3.86
84 85 6.715464 CAAAACTTGTTGTAGTACAGTCAGG 58.285 40.000 2.68 9.81 0.00 3.86
85 86 6.192360 GCAAAACTTGTTGTAGTACAGTCAG 58.808 40.000 2.68 3.54 0.00 3.51
86 87 5.065474 GGCAAAACTTGTTGTAGTACAGTCA 59.935 40.000 2.68 4.83 0.00 3.41
87 88 5.296035 AGGCAAAACTTGTTGTAGTACAGTC 59.704 40.000 2.68 2.30 0.00 3.51
88 89 5.065988 CAGGCAAAACTTGTTGTAGTACAGT 59.934 40.000 2.68 0.00 0.00 3.55
89 90 5.505654 CCAGGCAAAACTTGTTGTAGTACAG 60.506 44.000 2.68 0.00 0.00 2.74
90 91 4.336993 CCAGGCAAAACTTGTTGTAGTACA 59.663 41.667 0.00 0.00 0.00 2.90
91 92 4.791734 GCCAGGCAAAACTTGTTGTAGTAC 60.792 45.833 6.55 0.00 0.00 2.73
92 93 3.316868 GCCAGGCAAAACTTGTTGTAGTA 59.683 43.478 6.55 0.00 0.00 1.82
93 94 2.100749 GCCAGGCAAAACTTGTTGTAGT 59.899 45.455 6.55 0.00 0.00 2.73
94 95 2.362077 AGCCAGGCAAAACTTGTTGTAG 59.638 45.455 15.80 0.00 0.00 2.74
95 96 2.360801 GAGCCAGGCAAAACTTGTTGTA 59.639 45.455 15.80 0.00 0.00 2.41
96 97 1.136891 GAGCCAGGCAAAACTTGTTGT 59.863 47.619 15.80 0.00 0.00 3.32
97 98 1.410153 AGAGCCAGGCAAAACTTGTTG 59.590 47.619 15.80 0.00 0.00 3.33
98 99 1.410153 CAGAGCCAGGCAAAACTTGTT 59.590 47.619 15.80 0.00 0.00 2.83
99 100 1.035139 CAGAGCCAGGCAAAACTTGT 58.965 50.000 15.80 0.00 0.00 3.16
100 101 0.316204 CCAGAGCCAGGCAAAACTTG 59.684 55.000 15.80 2.19 0.00 3.16
101 102 2.737503 CCAGAGCCAGGCAAAACTT 58.262 52.632 15.80 0.00 0.00 2.66
102 103 4.507969 CCAGAGCCAGGCAAAACT 57.492 55.556 15.80 4.40 0.00 2.66
109 110 3.382803 CTCCTTCGCCAGAGCCAGG 62.383 68.421 0.00 0.00 37.32 4.45
110 111 2.186384 CTCCTTCGCCAGAGCCAG 59.814 66.667 0.00 0.00 34.57 4.85
111 112 3.393970 CCTCCTTCGCCAGAGCCA 61.394 66.667 0.00 0.00 34.57 4.75
112 113 4.168291 CCCTCCTTCGCCAGAGCC 62.168 72.222 0.00 0.00 34.57 4.70
113 114 4.168291 CCCCTCCTTCGCCAGAGC 62.168 72.222 0.00 0.00 0.00 4.09
114 115 4.168291 GCCCCTCCTTCGCCAGAG 62.168 72.222 0.00 0.00 0.00 3.35
116 117 3.350031 ATTGCCCCTCCTTCGCCAG 62.350 63.158 0.00 0.00 0.00 4.85
117 118 3.338250 ATTGCCCCTCCTTCGCCA 61.338 61.111 0.00 0.00 0.00 5.69
118 119 2.830370 CATTGCCCCTCCTTCGCC 60.830 66.667 0.00 0.00 0.00 5.54
119 120 2.115291 GTCATTGCCCCTCCTTCGC 61.115 63.158 0.00 0.00 0.00 4.70
120 121 1.815421 CGTCATTGCCCCTCCTTCG 60.815 63.158 0.00 0.00 0.00 3.79
121 122 1.452108 CCGTCATTGCCCCTCCTTC 60.452 63.158 0.00 0.00 0.00 3.46
122 123 2.677228 CCGTCATTGCCCCTCCTT 59.323 61.111 0.00 0.00 0.00 3.36
123 124 4.115199 GCCGTCATTGCCCCTCCT 62.115 66.667 0.00 0.00 0.00 3.69
145 146 1.078759 ATTGAAGCGAGCCGAAGACG 61.079 55.000 0.00 0.00 39.43 4.18
146 147 0.371645 CATTGAAGCGAGCCGAAGAC 59.628 55.000 0.00 0.00 0.00 3.01
147 148 1.361668 GCATTGAAGCGAGCCGAAGA 61.362 55.000 0.00 0.00 0.00 2.87
148 149 1.061570 GCATTGAAGCGAGCCGAAG 59.938 57.895 0.00 0.00 0.00 3.79
149 150 0.955428 AAGCATTGAAGCGAGCCGAA 60.955 50.000 0.00 0.00 40.15 4.30
150 151 1.375908 AAGCATTGAAGCGAGCCGA 60.376 52.632 0.00 0.00 40.15 5.54
151 152 3.181367 AAGCATTGAAGCGAGCCG 58.819 55.556 0.00 0.00 40.15 5.52
162 163 2.422479 TCTAGCGACGACTACAAGCATT 59.578 45.455 0.00 0.00 0.00 3.56
163 164 2.014857 TCTAGCGACGACTACAAGCAT 58.985 47.619 0.00 0.00 0.00 3.79
164 165 1.445871 TCTAGCGACGACTACAAGCA 58.554 50.000 0.00 0.00 0.00 3.91
165 166 2.376956 CATCTAGCGACGACTACAAGC 58.623 52.381 0.00 0.00 0.00 4.01
166 167 2.355132 ACCATCTAGCGACGACTACAAG 59.645 50.000 0.00 0.00 0.00 3.16
167 168 2.353889 GACCATCTAGCGACGACTACAA 59.646 50.000 0.00 0.00 0.00 2.41
168 169 1.938577 GACCATCTAGCGACGACTACA 59.061 52.381 0.00 0.00 0.00 2.74
169 170 2.211806 AGACCATCTAGCGACGACTAC 58.788 52.381 0.00 0.00 0.00 2.73
170 171 2.616634 AGACCATCTAGCGACGACTA 57.383 50.000 0.00 0.00 0.00 2.59
171 172 2.211806 GTAGACCATCTAGCGACGACT 58.788 52.381 0.00 0.00 28.01 4.18
172 173 1.070710 CGTAGACCATCTAGCGACGAC 60.071 57.143 0.00 0.00 29.07 4.34
173 174 1.215244 CGTAGACCATCTAGCGACGA 58.785 55.000 0.00 0.00 29.07 4.20
174 175 0.235144 CCGTAGACCATCTAGCGACG 59.765 60.000 0.00 0.00 30.61 5.12
175 176 1.590932 TCCGTAGACCATCTAGCGAC 58.409 55.000 0.00 0.00 30.61 5.19
176 177 2.038689 AGATCCGTAGACCATCTAGCGA 59.961 50.000 0.00 0.00 30.61 4.93
177 178 2.428491 AGATCCGTAGACCATCTAGCG 58.572 52.381 0.00 0.00 28.01 4.26
178 179 4.834534 TCTAGATCCGTAGACCATCTAGC 58.165 47.826 13.73 0.00 43.03 3.42
179 180 6.411376 ACATCTAGATCCGTAGACCATCTAG 58.589 44.000 1.03 12.93 44.01 2.43
180 181 6.375830 ACATCTAGATCCGTAGACCATCTA 57.624 41.667 1.03 0.00 31.75 1.98
181 182 5.249780 ACATCTAGATCCGTAGACCATCT 57.750 43.478 1.03 0.00 31.75 2.90
182 183 7.633193 AATACATCTAGATCCGTAGACCATC 57.367 40.000 1.03 0.00 31.75 3.51
183 184 8.423906 AAAATACATCTAGATCCGTAGACCAT 57.576 34.615 1.03 0.00 31.75 3.55
184 185 7.834881 AAAATACATCTAGATCCGTAGACCA 57.165 36.000 1.03 0.00 31.75 4.02
212 213 9.430623 GGCAATACAACCAACACTAAAAATAAT 57.569 29.630 0.00 0.00 0.00 1.28
213 214 8.421784 TGGCAATACAACCAACACTAAAAATAA 58.578 29.630 0.00 0.00 31.46 1.40
214 215 7.952671 TGGCAATACAACCAACACTAAAAATA 58.047 30.769 0.00 0.00 31.46 1.40
215 216 6.821388 TGGCAATACAACCAACACTAAAAAT 58.179 32.000 0.00 0.00 31.46 1.82
216 217 6.222038 TGGCAATACAACCAACACTAAAAA 57.778 33.333 0.00 0.00 31.46 1.94
217 218 5.854010 TGGCAATACAACCAACACTAAAA 57.146 34.783 0.00 0.00 31.46 1.52
218 219 5.536538 TCATGGCAATACAACCAACACTAAA 59.463 36.000 0.00 0.00 39.96 1.85
219 220 5.073428 TCATGGCAATACAACCAACACTAA 58.927 37.500 0.00 0.00 39.96 2.24
220 221 4.657013 TCATGGCAATACAACCAACACTA 58.343 39.130 0.00 0.00 39.96 2.74
221 222 3.495331 TCATGGCAATACAACCAACACT 58.505 40.909 0.00 0.00 39.96 3.55
222 223 3.932545 TCATGGCAATACAACCAACAC 57.067 42.857 0.00 0.00 39.96 3.32
223 224 4.525874 TCAATCATGGCAATACAACCAACA 59.474 37.500 0.00 0.00 39.96 3.33
224 225 5.070770 TCAATCATGGCAATACAACCAAC 57.929 39.130 0.00 0.00 39.96 3.77
225 226 5.735285 TTCAATCATGGCAATACAACCAA 57.265 34.783 0.00 0.00 39.96 3.67
226 227 5.735285 TTTCAATCATGGCAATACAACCA 57.265 34.783 0.00 0.00 41.06 3.67
227 228 6.817641 TCATTTTCAATCATGGCAATACAACC 59.182 34.615 0.00 0.00 0.00 3.77
228 229 7.830940 TCATTTTCAATCATGGCAATACAAC 57.169 32.000 0.00 0.00 0.00 3.32
230 231 9.752961 CTATTCATTTTCAATCATGGCAATACA 57.247 29.630 0.00 0.00 0.00 2.29
231 232 9.970395 TCTATTCATTTTCAATCATGGCAATAC 57.030 29.630 0.00 0.00 0.00 1.89
234 235 9.320352 CAATCTATTCATTTTCAATCATGGCAA 57.680 29.630 0.00 0.00 0.00 4.52
235 236 8.697292 TCAATCTATTCATTTTCAATCATGGCA 58.303 29.630 0.00 0.00 0.00 4.92
236 237 9.537192 TTCAATCTATTCATTTTCAATCATGGC 57.463 29.630 0.00 0.00 0.00 4.40
282 283 8.109634 AGTGATATCCTGTTCCTGTATGTTTTT 58.890 33.333 0.00 0.00 0.00 1.94
283 284 7.554118 CAGTGATATCCTGTTCCTGTATGTTTT 59.446 37.037 0.00 0.00 0.00 2.43
284 285 7.050377 CAGTGATATCCTGTTCCTGTATGTTT 58.950 38.462 0.00 0.00 0.00 2.83
285 286 6.156949 ACAGTGATATCCTGTTCCTGTATGTT 59.843 38.462 16.59 0.00 40.14 2.71
286 287 5.663106 ACAGTGATATCCTGTTCCTGTATGT 59.337 40.000 16.59 0.00 40.14 2.29
287 288 6.041409 AGACAGTGATATCCTGTTCCTGTATG 59.959 42.308 20.81 0.77 43.00 2.39
288 289 6.139671 AGACAGTGATATCCTGTTCCTGTAT 58.860 40.000 20.81 9.64 43.00 2.29
289 290 5.519808 AGACAGTGATATCCTGTTCCTGTA 58.480 41.667 20.81 0.00 43.00 2.74
290 291 4.357325 AGACAGTGATATCCTGTTCCTGT 58.643 43.478 20.81 13.27 43.00 4.00
291 292 5.350504 AAGACAGTGATATCCTGTTCCTG 57.649 43.478 20.81 10.99 43.00 3.86
292 293 5.600484 CCTAAGACAGTGATATCCTGTTCCT 59.400 44.000 20.81 14.41 43.00 3.36
293 294 5.740513 GCCTAAGACAGTGATATCCTGTTCC 60.741 48.000 20.81 12.98 43.00 3.62
294 295 5.069781 AGCCTAAGACAGTGATATCCTGTTC 59.930 44.000 20.81 15.61 43.00 3.18
295 296 4.965532 AGCCTAAGACAGTGATATCCTGTT 59.034 41.667 20.81 12.67 43.00 3.16
296 297 4.551671 AGCCTAAGACAGTGATATCCTGT 58.448 43.478 20.29 20.29 45.52 4.00
297 298 4.320861 CGAGCCTAAGACAGTGATATCCTG 60.321 50.000 15.59 15.59 36.01 3.86
298 299 3.823873 CGAGCCTAAGACAGTGATATCCT 59.176 47.826 0.00 0.00 0.00 3.24
299 300 3.057174 CCGAGCCTAAGACAGTGATATCC 60.057 52.174 0.00 0.00 0.00 2.59
300 301 3.821600 TCCGAGCCTAAGACAGTGATATC 59.178 47.826 0.00 0.00 0.00 1.63
301 302 3.833732 TCCGAGCCTAAGACAGTGATAT 58.166 45.455 0.00 0.00 0.00 1.63
302 303 3.292492 TCCGAGCCTAAGACAGTGATA 57.708 47.619 0.00 0.00 0.00 2.15
303 304 2.145397 TCCGAGCCTAAGACAGTGAT 57.855 50.000 0.00 0.00 0.00 3.06
304 305 1.919240 TTCCGAGCCTAAGACAGTGA 58.081 50.000 0.00 0.00 0.00 3.41
305 306 2.737252 GTTTTCCGAGCCTAAGACAGTG 59.263 50.000 0.00 0.00 0.00 3.66
306 307 2.633481 AGTTTTCCGAGCCTAAGACAGT 59.367 45.455 0.00 0.00 0.00 3.55
307 308 3.320673 AGTTTTCCGAGCCTAAGACAG 57.679 47.619 0.00 0.00 0.00 3.51
308 309 3.194968 CCTAGTTTTCCGAGCCTAAGACA 59.805 47.826 0.00 0.00 0.00 3.41
309 310 3.783191 CCTAGTTTTCCGAGCCTAAGAC 58.217 50.000 0.00 0.00 0.00 3.01
310 311 2.167900 GCCTAGTTTTCCGAGCCTAAGA 59.832 50.000 0.00 0.00 0.00 2.10
311 312 2.093658 TGCCTAGTTTTCCGAGCCTAAG 60.094 50.000 0.00 0.00 0.00 2.18
312 313 1.903860 TGCCTAGTTTTCCGAGCCTAA 59.096 47.619 0.00 0.00 0.00 2.69
313 314 1.563924 TGCCTAGTTTTCCGAGCCTA 58.436 50.000 0.00 0.00 0.00 3.93
314 315 0.690762 TTGCCTAGTTTTCCGAGCCT 59.309 50.000 0.00 0.00 0.00 4.58
315 316 1.751437 ATTGCCTAGTTTTCCGAGCC 58.249 50.000 0.00 0.00 0.00 4.70
316 317 3.850122 AAATTGCCTAGTTTTCCGAGC 57.150 42.857 0.00 0.00 0.00 5.03
317 318 9.503427 CTTAATTAAATTGCCTAGTTTTCCGAG 57.497 33.333 0.00 0.00 0.00 4.63
318 319 7.971722 GCTTAATTAAATTGCCTAGTTTTCCGA 59.028 33.333 0.00 0.00 0.00 4.55
319 320 7.757624 TGCTTAATTAAATTGCCTAGTTTTCCG 59.242 33.333 0.00 0.00 0.00 4.30
320 321 8.996024 TGCTTAATTAAATTGCCTAGTTTTCC 57.004 30.769 0.00 0.00 0.00 3.13
367 368 9.574516 GGAGGGATTATCAAATACAAGTTACAT 57.425 33.333 0.00 0.00 0.00 2.29
368 369 7.713507 CGGAGGGATTATCAAATACAAGTTACA 59.286 37.037 0.00 0.00 0.00 2.41
369 370 7.713942 ACGGAGGGATTATCAAATACAAGTTAC 59.286 37.037 0.00 0.00 0.00 2.50
370 371 7.798071 ACGGAGGGATTATCAAATACAAGTTA 58.202 34.615 0.00 0.00 0.00 2.24
371 372 6.659824 ACGGAGGGATTATCAAATACAAGTT 58.340 36.000 0.00 0.00 0.00 2.66
372 373 6.248569 ACGGAGGGATTATCAAATACAAGT 57.751 37.500 0.00 0.00 0.00 3.16
373 374 7.282224 TGAAACGGAGGGATTATCAAATACAAG 59.718 37.037 0.00 0.00 0.00 3.16
374 375 7.113437 TGAAACGGAGGGATTATCAAATACAA 58.887 34.615 0.00 0.00 0.00 2.41
375 376 6.654959 TGAAACGGAGGGATTATCAAATACA 58.345 36.000 0.00 0.00 0.00 2.29
376 377 6.766467 ACTGAAACGGAGGGATTATCAAATAC 59.234 38.462 0.00 0.00 0.00 1.89
377 378 6.895782 ACTGAAACGGAGGGATTATCAAATA 58.104 36.000 0.00 0.00 0.00 1.40
378 379 5.755849 ACTGAAACGGAGGGATTATCAAAT 58.244 37.500 0.00 0.00 0.00 2.32
379 380 5.174037 ACTGAAACGGAGGGATTATCAAA 57.826 39.130 0.00 0.00 0.00 2.69
380 381 4.837093 ACTGAAACGGAGGGATTATCAA 57.163 40.909 0.00 0.00 0.00 2.57
381 382 4.837093 AACTGAAACGGAGGGATTATCA 57.163 40.909 0.00 0.00 0.00 2.15
382 383 6.110707 TGTAAACTGAAACGGAGGGATTATC 58.889 40.000 0.00 0.00 0.00 1.75
383 384 6.057321 TGTAAACTGAAACGGAGGGATTAT 57.943 37.500 0.00 0.00 0.00 1.28
384 385 5.486735 TGTAAACTGAAACGGAGGGATTA 57.513 39.130 0.00 0.00 0.00 1.75
385 386 4.360951 TGTAAACTGAAACGGAGGGATT 57.639 40.909 0.00 0.00 0.00 3.01
386 387 4.202430 ACTTGTAAACTGAAACGGAGGGAT 60.202 41.667 0.00 0.00 0.00 3.85
387 388 3.135167 ACTTGTAAACTGAAACGGAGGGA 59.865 43.478 0.00 0.00 0.00 4.20
388 389 3.473625 ACTTGTAAACTGAAACGGAGGG 58.526 45.455 0.00 0.00 0.00 4.30
389 390 4.124238 TGACTTGTAAACTGAAACGGAGG 58.876 43.478 0.00 0.00 0.00 4.30
390 391 5.679906 CATGACTTGTAAACTGAAACGGAG 58.320 41.667 0.00 0.00 0.00 4.63
391 392 4.024387 GCATGACTTGTAAACTGAAACGGA 60.024 41.667 0.00 0.00 0.00 4.69
392 393 4.219033 GCATGACTTGTAAACTGAAACGG 58.781 43.478 0.00 0.00 0.00 4.44
393 394 4.670621 GTGCATGACTTGTAAACTGAAACG 59.329 41.667 0.00 0.00 0.00 3.60
394 395 4.670621 CGTGCATGACTTGTAAACTGAAAC 59.329 41.667 0.00 0.00 0.00 2.78
395 396 4.334203 ACGTGCATGACTTGTAAACTGAAA 59.666 37.500 14.17 0.00 0.00 2.69
396 397 3.874543 ACGTGCATGACTTGTAAACTGAA 59.125 39.130 14.17 0.00 0.00 3.02
397 398 3.462982 ACGTGCATGACTTGTAAACTGA 58.537 40.909 14.17 0.00 0.00 3.41
398 399 3.878086 ACGTGCATGACTTGTAAACTG 57.122 42.857 14.17 0.00 0.00 3.16
399 400 5.579511 GGTATACGTGCATGACTTGTAAACT 59.420 40.000 14.17 0.00 0.00 2.66
400 401 5.579511 AGGTATACGTGCATGACTTGTAAAC 59.420 40.000 14.17 0.00 0.00 2.01
401 402 5.726397 AGGTATACGTGCATGACTTGTAAA 58.274 37.500 14.17 0.00 0.00 2.01
402 403 5.333299 AGGTATACGTGCATGACTTGTAA 57.667 39.130 14.17 0.00 0.00 2.41
403 404 4.994907 AGGTATACGTGCATGACTTGTA 57.005 40.909 14.17 0.00 0.00 2.41
404 405 3.887621 AGGTATACGTGCATGACTTGT 57.112 42.857 14.17 0.00 0.00 3.16
405 406 4.202121 ACCTAGGTATACGTGCATGACTTG 60.202 45.833 14.41 3.88 0.00 3.16
406 407 3.958798 ACCTAGGTATACGTGCATGACTT 59.041 43.478 14.41 0.00 0.00 3.01
407 408 3.563223 ACCTAGGTATACGTGCATGACT 58.437 45.455 14.41 5.16 0.00 3.41
408 409 4.049186 CAACCTAGGTATACGTGCATGAC 58.951 47.826 16.67 0.00 0.00 3.06
409 410 3.491964 GCAACCTAGGTATACGTGCATGA 60.492 47.826 24.38 0.00 30.08 3.07
410 411 2.800544 GCAACCTAGGTATACGTGCATG 59.199 50.000 24.38 13.63 30.08 4.06
411 412 2.224209 GGCAACCTAGGTATACGTGCAT 60.224 50.000 28.23 4.70 30.93 3.96
412 413 1.137479 GGCAACCTAGGTATACGTGCA 59.863 52.381 28.23 0.00 30.93 4.57
413 414 1.137479 TGGCAACCTAGGTATACGTGC 59.863 52.381 22.21 22.21 0.00 5.34
414 415 3.530265 TTGGCAACCTAGGTATACGTG 57.470 47.619 16.67 10.64 0.00 4.49
415 416 4.765813 AATTGGCAACCTAGGTATACGT 57.234 40.909 16.67 3.23 0.00 3.57
416 417 5.355910 ACAAAATTGGCAACCTAGGTATACG 59.644 40.000 16.67 5.52 0.00 3.06
417 418 6.376018 TGACAAAATTGGCAACCTAGGTATAC 59.624 38.462 16.67 8.74 44.72 1.47
418 419 6.486056 TGACAAAATTGGCAACCTAGGTATA 58.514 36.000 16.67 0.00 44.72 1.47
419 420 5.329399 TGACAAAATTGGCAACCTAGGTAT 58.671 37.500 16.67 0.83 44.72 2.73
420 421 4.730966 TGACAAAATTGGCAACCTAGGTA 58.269 39.130 16.67 0.00 44.72 3.08
421 422 3.571590 TGACAAAATTGGCAACCTAGGT 58.428 40.909 9.21 9.21 44.72 3.08
429 430 7.962995 TTATATTAGGGTGACAAAATTGGCA 57.037 32.000 0.00 0.00 45.70 4.92
430 431 8.860088 AGATTATATTAGGGTGACAAAATTGGC 58.140 33.333 0.00 0.00 36.50 4.52
529 530 9.513906 TCAATTTGACCAATCTAATACAAGTCA 57.486 29.630 0.00 0.00 31.15 3.41
530 531 9.774742 GTCAATTTGACCAATCTAATACAAGTC 57.225 33.333 17.07 0.00 41.37 3.01
531 532 8.450964 CGTCAATTTGACCAATCTAATACAAGT 58.549 33.333 20.87 0.00 44.20 3.16
532 533 8.664798 TCGTCAATTTGACCAATCTAATACAAG 58.335 33.333 20.87 4.88 44.20 3.16
533 534 8.447833 GTCGTCAATTTGACCAATCTAATACAA 58.552 33.333 20.87 0.00 44.20 2.41
534 535 7.970384 GTCGTCAATTTGACCAATCTAATACA 58.030 34.615 20.87 0.00 44.20 2.29
546 547 5.681982 CGTATCTCTAGGTCGTCAATTTGAC 59.318 44.000 17.76 17.76 43.65 3.18
547 548 5.732528 GCGTATCTCTAGGTCGTCAATTTGA 60.733 44.000 0.00 0.00 0.00 2.69
548 549 4.441415 GCGTATCTCTAGGTCGTCAATTTG 59.559 45.833 0.00 0.00 0.00 2.32
549 550 4.097437 TGCGTATCTCTAGGTCGTCAATTT 59.903 41.667 0.00 0.00 0.00 1.82
550 551 3.630769 TGCGTATCTCTAGGTCGTCAATT 59.369 43.478 0.00 0.00 0.00 2.32
551 552 3.003482 GTGCGTATCTCTAGGTCGTCAAT 59.997 47.826 0.00 0.00 0.00 2.57
552 553 2.353889 GTGCGTATCTCTAGGTCGTCAA 59.646 50.000 0.00 0.00 0.00 3.18
553 554 1.938577 GTGCGTATCTCTAGGTCGTCA 59.061 52.381 0.00 0.00 0.00 4.35
554 555 1.938577 TGTGCGTATCTCTAGGTCGTC 59.061 52.381 0.00 0.00 0.00 4.20
555 556 1.669779 GTGTGCGTATCTCTAGGTCGT 59.330 52.381 0.00 0.00 0.00 4.34
556 557 1.332993 CGTGTGCGTATCTCTAGGTCG 60.333 57.143 0.00 0.00 0.00 4.79
557 558 1.597445 GCGTGTGCGTATCTCTAGGTC 60.597 57.143 0.00 0.00 40.81 3.85
558 559 0.381089 GCGTGTGCGTATCTCTAGGT 59.619 55.000 0.00 0.00 40.81 3.08
559 560 0.317938 GGCGTGTGCGTATCTCTAGG 60.318 60.000 0.00 0.00 44.10 3.02
560 561 0.317938 GGGCGTGTGCGTATCTCTAG 60.318 60.000 0.00 0.00 44.10 2.43
561 562 0.750546 AGGGCGTGTGCGTATCTCTA 60.751 55.000 0.00 0.00 44.10 2.43
562 563 0.750546 TAGGGCGTGTGCGTATCTCT 60.751 55.000 0.00 0.00 44.10 3.10
563 564 0.314302 ATAGGGCGTGTGCGTATCTC 59.686 55.000 0.00 0.00 44.10 2.75
564 565 1.612676 TATAGGGCGTGTGCGTATCT 58.387 50.000 0.00 0.00 44.10 1.98
565 566 2.427232 TTATAGGGCGTGTGCGTATC 57.573 50.000 0.00 0.00 44.10 2.24
566 567 2.894763 TTTATAGGGCGTGTGCGTAT 57.105 45.000 0.00 0.00 44.10 3.06
567 568 2.867368 CAATTTATAGGGCGTGTGCGTA 59.133 45.455 0.00 0.00 44.10 4.42
568 569 1.668751 CAATTTATAGGGCGTGTGCGT 59.331 47.619 0.00 0.00 44.10 5.24
569 570 1.937223 TCAATTTATAGGGCGTGTGCG 59.063 47.619 0.00 0.00 44.10 5.34
570 571 3.202906 TCTCAATTTATAGGGCGTGTGC 58.797 45.455 0.00 0.00 41.71 4.57
571 572 4.693283 TCTCTCAATTTATAGGGCGTGTG 58.307 43.478 0.00 0.00 0.00 3.82
572 573 4.649674 TCTCTCTCAATTTATAGGGCGTGT 59.350 41.667 0.00 0.00 0.00 4.49
573 574 5.201713 TCTCTCTCAATTTATAGGGCGTG 57.798 43.478 0.00 0.00 0.00 5.34
574 575 5.279708 CCATCTCTCTCAATTTATAGGGCGT 60.280 44.000 0.00 0.00 0.00 5.68
575 576 5.047021 TCCATCTCTCTCAATTTATAGGGCG 60.047 44.000 0.00 0.00 0.00 6.13
576 577 6.013812 ACTCCATCTCTCTCAATTTATAGGGC 60.014 42.308 0.00 0.00 0.00 5.19
577 578 7.552050 ACTCCATCTCTCTCAATTTATAGGG 57.448 40.000 0.00 0.00 0.00 3.53
583 584 9.995003 GTATTCATACTCCATCTCTCTCAATTT 57.005 33.333 0.00 0.00 0.00 1.82
584 585 9.152327 TGTATTCATACTCCATCTCTCTCAATT 57.848 33.333 0.00 0.00 34.41 2.32
585 586 8.718158 TGTATTCATACTCCATCTCTCTCAAT 57.282 34.615 0.00 0.00 34.41 2.57
586 587 7.232330 CCTGTATTCATACTCCATCTCTCTCAA 59.768 40.741 0.00 0.00 34.41 3.02
587 588 6.718912 CCTGTATTCATACTCCATCTCTCTCA 59.281 42.308 0.00 0.00 34.41 3.27
588 589 6.152661 CCCTGTATTCATACTCCATCTCTCTC 59.847 46.154 0.00 0.00 34.41 3.20
589 590 6.015918 CCCTGTATTCATACTCCATCTCTCT 58.984 44.000 0.00 0.00 34.41 3.10
590 591 5.337169 GCCCTGTATTCATACTCCATCTCTC 60.337 48.000 0.00 0.00 34.41 3.20
591 592 4.530161 GCCCTGTATTCATACTCCATCTCT 59.470 45.833 0.00 0.00 34.41 3.10
592 593 4.619394 CGCCCTGTATTCATACTCCATCTC 60.619 50.000 0.00 0.00 34.41 2.75
593 594 3.259374 CGCCCTGTATTCATACTCCATCT 59.741 47.826 0.00 0.00 34.41 2.90
594 595 3.589988 CGCCCTGTATTCATACTCCATC 58.410 50.000 0.00 0.00 34.41 3.51
595 596 2.289694 GCGCCCTGTATTCATACTCCAT 60.290 50.000 0.00 0.00 34.41 3.41
596 597 1.070134 GCGCCCTGTATTCATACTCCA 59.930 52.381 0.00 0.00 34.41 3.86
597 598 1.070134 TGCGCCCTGTATTCATACTCC 59.930 52.381 4.18 0.00 34.41 3.85
598 599 2.526304 TGCGCCCTGTATTCATACTC 57.474 50.000 4.18 0.00 34.41 2.59
599 600 2.485479 CCTTGCGCCCTGTATTCATACT 60.485 50.000 4.18 0.00 34.41 2.12
600 601 1.873591 CCTTGCGCCCTGTATTCATAC 59.126 52.381 4.18 0.00 0.00 2.39
614 615 2.434884 ACCACGAGATGCCTTGCG 60.435 61.111 0.00 0.00 0.00 4.85
649 650 4.335315 ACCAAGTTCACACACATACACAAG 59.665 41.667 0.00 0.00 0.00 3.16
656 657 3.625764 GTGTACACCAAGTTCACACACAT 59.374 43.478 15.42 0.00 44.91 3.21
658 659 3.668596 GTGTACACCAAGTTCACACAC 57.331 47.619 15.42 0.00 44.91 3.82
677 678 6.493189 AACATACCCAAAACCAAAATCAGT 57.507 33.333 0.00 0.00 0.00 3.41
707 711 1.046472 ACGTGTCCCCTGTTCTGACA 61.046 55.000 0.00 0.00 36.71 3.58
789 797 2.109126 GGGCTTGCTCACATCCGTC 61.109 63.158 0.00 0.00 0.00 4.79
840 849 2.034221 GAGGCCCCACTTGTCACC 59.966 66.667 0.00 0.00 0.00 4.02
1156 1166 0.400213 TCTTGGATGCCGAGTTGGTT 59.600 50.000 0.00 0.00 41.21 3.67
1267 1290 3.066190 CTGTACAGGGACCGGCGA 61.066 66.667 15.49 0.00 0.00 5.54
1436 1508 1.889105 CAGATTACCGCGCCTGCAT 60.889 57.895 0.00 0.00 42.97 3.96
1553 1641 3.718864 CGGAAAATACATGCATTTCGACG 59.281 43.478 4.36 6.24 34.63 5.12
1724 1818 7.597369 AGGTCAAAACTTTTGTTACTGTTGTTC 59.403 33.333 12.88 0.00 42.67 3.18
1756 1850 3.646736 ATTGTAGGTTTAGGTGCCCTC 57.353 47.619 0.00 0.00 34.61 4.30
1950 2050 1.922821 GCTAGGAAGGCCATCCCAA 59.077 57.895 23.39 11.19 40.59 4.12
2086 2186 1.089112 TTCTTCTCCACGATACGCGA 58.911 50.000 15.93 0.00 44.57 5.87
2121 2221 0.606401 CACCCTTCGTCATGGTGCTT 60.606 55.000 0.00 0.00 42.71 3.91
2129 2229 1.203013 TCTCTTCCTCACCCTTCGTCA 60.203 52.381 0.00 0.00 0.00 4.35
2152 2252 3.584406 TGTCTCTAGCTTGCTCTTGTC 57.416 47.619 0.00 0.00 0.00 3.18
2206 2312 1.054231 CATCCTCCTCTGGCAGCATA 58.946 55.000 10.34 0.00 0.00 3.14
2274 2390 0.602905 GCAAGCAGTACGAGTTGGGT 60.603 55.000 0.00 0.00 0.00 4.51
2537 2656 7.625185 GCTTTTCAATGTATTCTGACTCTGACC 60.625 40.741 0.00 0.00 0.00 4.02
2541 2660 6.479884 AGGCTTTTCAATGTATTCTGACTCT 58.520 36.000 0.00 0.00 0.00 3.24
2559 2678 2.028385 ACAATCGTCGAACCTAGGCTTT 60.028 45.455 9.30 0.00 0.00 3.51
2570 2689 4.095782 TCATGACATCAGTACAATCGTCGA 59.904 41.667 0.00 0.00 0.00 4.20
2580 2699 3.708121 AGCCAGTGATCATGACATCAGTA 59.292 43.478 0.00 0.00 34.70 2.74
2596 2715 0.885879 TTGTCATCGTCGTAGCCAGT 59.114 50.000 0.00 0.00 0.00 4.00
2615 2734 1.067283 CAGGCGAGTCTTCATCACTGT 60.067 52.381 0.00 0.00 0.00 3.55
2619 2738 3.447229 TGTAATCAGGCGAGTCTTCATCA 59.553 43.478 0.00 0.00 0.00 3.07
2637 2756 8.325421 TCACCTTAATGTTTTCGCTATTGTAA 57.675 30.769 0.00 0.00 0.00 2.41
2674 2793 2.822561 GCTTCTTTCCCCTCTTCTTTGG 59.177 50.000 0.00 0.00 0.00 3.28
2698 2817 2.026822 ACTTGAGTGATCGGGCTTTCAT 60.027 45.455 0.00 0.00 0.00 2.57
2761 2880 8.893727 AGTTTCTACTATATTGTTTCCACATGC 58.106 33.333 0.00 0.00 31.21 4.06
2839 2964 8.678199 GGAACTCTTTTAATAGCTAGTGCAAAT 58.322 33.333 3.45 0.00 42.74 2.32
2895 3968 2.241941 TCACAATGACCAGGCACCATAT 59.758 45.455 0.00 0.00 0.00 1.78
2896 3969 1.632920 TCACAATGACCAGGCACCATA 59.367 47.619 0.00 0.00 0.00 2.74
2897 3970 0.405198 TCACAATGACCAGGCACCAT 59.595 50.000 0.00 0.00 0.00 3.55
2898 3971 0.405198 ATCACAATGACCAGGCACCA 59.595 50.000 0.00 0.00 0.00 4.17
2899 3972 0.813184 CATCACAATGACCAGGCACC 59.187 55.000 0.00 0.00 34.61 5.01
2901 3974 0.323633 CCCATCACAATGACCAGGCA 60.324 55.000 0.00 0.00 34.61 4.75
2902 3975 1.669999 GCCCATCACAATGACCAGGC 61.670 60.000 0.00 0.00 34.61 4.85
2903 3976 1.378882 CGCCCATCACAATGACCAGG 61.379 60.000 0.00 0.00 34.61 4.45
2904 3977 0.392863 TCGCCCATCACAATGACCAG 60.393 55.000 0.00 0.00 34.61 4.00
2947 4020 9.336171 ACTGCACAAAATAAACAAATAAACCAT 57.664 25.926 0.00 0.00 0.00 3.55
2971 4044 5.564651 GCACACACCATTGCATAAACTAACT 60.565 40.000 0.00 0.00 38.68 2.24
2973 4046 4.522405 AGCACACACCATTGCATAAACTAA 59.478 37.500 0.00 0.00 41.48 2.24
2975 4048 2.892852 AGCACACACCATTGCATAAACT 59.107 40.909 0.00 0.00 41.48 2.66
2983 4056 1.466856 ATGCCTAGCACACACCATTG 58.533 50.000 0.00 0.00 43.04 2.82
2987 4060 0.527565 CCAAATGCCTAGCACACACC 59.472 55.000 0.00 0.00 43.04 4.16
2989 4062 1.885887 GAACCAAATGCCTAGCACACA 59.114 47.619 0.00 0.00 43.04 3.72
2992 4065 1.474077 CAGGAACCAAATGCCTAGCAC 59.526 52.381 0.00 0.00 43.04 4.40
3010 4083 5.097529 CCACAATCATTCATCGGTTTTCAG 58.902 41.667 0.00 0.00 0.00 3.02
3018 4091 3.561310 CCCAGTACCACAATCATTCATCG 59.439 47.826 0.00 0.00 0.00 3.84
3028 4101 0.400213 CCTTGAGCCCAGTACCACAA 59.600 55.000 0.00 0.00 0.00 3.33
3037 4110 1.306141 ATCCGTCTCCTTGAGCCCA 60.306 57.895 0.00 0.00 0.00 5.36
3038 4111 1.144936 CATCCGTCTCCTTGAGCCC 59.855 63.158 0.00 0.00 0.00 5.19
3046 4119 4.176752 GGTGGGGCATCCGTCTCC 62.177 72.222 0.00 0.00 38.76 3.71
3073 4146 9.368674 CTATATCATGTTCAGACATTGATCTCC 57.631 37.037 0.00 0.00 43.92 3.71
3219 4293 0.942410 TTTCGAGGCGGAGTTGTTCG 60.942 55.000 0.00 0.00 0.00 3.95
3220 4294 1.070108 GTTTTCGAGGCGGAGTTGTTC 60.070 52.381 0.00 0.00 0.00 3.18
3227 4303 3.429822 CCTGTATTAGTTTTCGAGGCGGA 60.430 47.826 0.00 0.00 0.00 5.54
3229 4305 3.777478 TCCTGTATTAGTTTTCGAGGCG 58.223 45.455 0.00 0.00 0.00 5.52
3235 4311 8.652810 TTATACCGCTTCCTGTATTAGTTTTC 57.347 34.615 0.00 0.00 0.00 2.29
3243 4319 7.014905 TCTGTTGTATTATACCGCTTCCTGTAT 59.985 37.037 0.00 0.00 0.00 2.29
3261 4337 5.393352 GCCATCATCATGCTTTTCTGTTGTA 60.393 40.000 0.00 0.00 0.00 2.41
3267 4343 2.693591 CCTGCCATCATCATGCTTTTCT 59.306 45.455 0.00 0.00 0.00 2.52
3279 4355 1.634973 TCAATTGGAGTCCTGCCATCA 59.365 47.619 11.33 0.00 34.90 3.07
3286 4362 2.716424 TGTCCCTTTCAATTGGAGTCCT 59.284 45.455 11.33 0.00 0.00 3.85
3319 4395 0.867753 CGTGAGTGCGCACTAGGATC 60.868 60.000 40.77 28.03 42.66 3.36
3328 4404 0.459585 TAAGGATTCCGTGAGTGCGC 60.460 55.000 0.00 0.00 0.00 6.09
3348 4424 4.737946 GCCAGATGCTAAAGATGTCGTAGT 60.738 45.833 0.00 0.00 36.87 2.73
3361 4437 2.026641 GCCTTTTCATGCCAGATGCTA 58.973 47.619 0.00 0.00 42.00 3.49
3369 4445 1.188863 ATCACCTGCCTTTTCATGCC 58.811 50.000 0.00 0.00 0.00 4.40
3388 4464 4.994852 AGCTTGCGAGTACATTCAAAGTAA 59.005 37.500 2.14 0.00 0.00 2.24
3391 4467 3.681897 AGAGCTTGCGAGTACATTCAAAG 59.318 43.478 2.14 0.00 0.00 2.77
3399 4475 2.404215 TGTTTGAGAGCTTGCGAGTAC 58.596 47.619 2.14 0.00 0.00 2.73
3413 4489 4.511527 TGCTTGCTTTTTGGATTGTTTGA 58.488 34.783 0.00 0.00 0.00 2.69
3441 4517 6.311445 TCTTTTCGATTGATGTGTTCTAGAGC 59.689 38.462 0.00 0.00 0.00 4.09
3442 4518 7.818493 TCTTTTCGATTGATGTGTTCTAGAG 57.182 36.000 0.00 0.00 0.00 2.43
3443 4519 8.495949 GTTTCTTTTCGATTGATGTGTTCTAGA 58.504 33.333 0.00 0.00 0.00 2.43
3452 4528 8.795786 TTTAACCTGTTTCTTTTCGATTGATG 57.204 30.769 0.00 0.00 0.00 3.07
3513 4589 9.110617 GTTAAATGATCATGCGATGAGTATTTG 57.889 33.333 9.46 0.00 43.53 2.32
3524 4600 5.107645 CCATGCAATGTTAAATGATCATGCG 60.108 40.000 9.46 0.00 44.81 4.73
3527 4603 6.463331 GGGTCCATGCAATGTTAAATGATCAT 60.463 38.462 1.18 1.18 44.81 2.45
3533 4609 4.613437 AGAGGGTCCATGCAATGTTAAAT 58.387 39.130 0.00 0.00 44.81 1.40
3538 4614 1.211457 GAGAGAGGGTCCATGCAATGT 59.789 52.381 0.00 0.00 44.81 2.71
3542 4618 1.620739 GCTGAGAGAGGGTCCATGCA 61.621 60.000 0.00 0.00 0.00 3.96
3543 4619 1.145819 GCTGAGAGAGGGTCCATGC 59.854 63.158 0.00 0.00 0.00 4.06
3577 4653 2.427453 GTGGCTAGGAGAAGTGAATCGA 59.573 50.000 0.00 0.00 0.00 3.59
3579 4655 2.769095 AGGTGGCTAGGAGAAGTGAATC 59.231 50.000 0.00 0.00 0.00 2.52
3583 4659 0.457851 CGAGGTGGCTAGGAGAAGTG 59.542 60.000 0.00 0.00 0.00 3.16
3602 4678 2.558359 CAGGGAAAGTTGGGTTGATCAC 59.442 50.000 0.00 0.00 0.00 3.06
3625 4701 6.211664 ACTAAGTGTCGAAATGAAGAAACG 57.788 37.500 0.00 0.00 30.24 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.