Multiple sequence alignment - TraesCS5B01G508800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G508800 chr5B 100.000 3034 0 0 1 3034 673987752 673990785 0.000000e+00 5603.0
1 TraesCS5B01G508800 chr5B 85.263 190 22 4 2 190 20651684 20651868 1.110000e-44 191.0
2 TraesCS5B01G508800 chr5D 89.267 1528 70 31 776 2258 533912774 533914252 0.000000e+00 1827.0
3 TraesCS5B01G508800 chr5D 86.444 568 27 16 2305 2851 533914205 533914743 7.290000e-161 577.0
4 TraesCS5B01G508800 chr5D 78.673 633 68 38 178 763 533911797 533912409 2.880000e-95 359.0
5 TraesCS5B01G508800 chr5D 97.727 44 0 1 310 352 241832275 241832318 1.170000e-09 75.0
6 TraesCS5B01G508800 chr5D 95.000 40 2 0 324 363 487918437 487918398 2.530000e-06 63.9
7 TraesCS5B01G508800 chr4A 90.685 891 48 14 896 1784 637966934 637966077 0.000000e+00 1153.0
8 TraesCS5B01G508800 chr4A 81.193 872 100 30 7 839 637968089 637967243 0.000000e+00 643.0
9 TraesCS5B01G508800 chr4A 85.968 506 31 17 1921 2403 637966076 637965588 3.490000e-139 505.0
10 TraesCS5B01G508800 chr4A 76.389 864 106 51 7 825 637981520 637980710 2.860000e-100 375.0
11 TraesCS5B01G508800 chr4A 76.322 794 76 55 6 757 637990352 637989629 3.770000e-84 322.0
12 TraesCS5B01G508800 chr4A 75.207 847 115 44 7 809 637980517 637979722 2.270000e-81 313.0
13 TraesCS5B01G508800 chr4A 76.098 615 88 37 7 574 637971888 637971286 1.790000e-67 267.0
14 TraesCS5B01G508800 chr4A 76.384 614 72 45 6 585 637982721 637982147 2.320000e-66 263.0
15 TraesCS5B01G508800 chr3B 90.278 72 6 1 1436 1506 822984505 822984576 3.220000e-15 93.5
16 TraesCS5B01G508800 chr3B 90.769 65 6 0 1258 1322 822984291 822984355 1.500000e-13 87.9
17 TraesCS5B01G508800 chr3D 83.838 99 13 2 1224 1322 613747841 613747936 1.160000e-14 91.6
18 TraesCS5B01G508800 chr3A 90.769 65 6 0 1258 1322 749415195 749415259 1.500000e-13 87.9
19 TraesCS5B01G508800 chr3A 88.571 70 7 1 1438 1506 749415377 749415446 1.940000e-12 84.2
20 TraesCS5B01G508800 chr6A 89.831 59 6 0 313 371 12293880 12293938 3.240000e-10 76.8
21 TraesCS5B01G508800 chr6A 85.965 57 6 2 316 371 7722145 7722090 3.270000e-05 60.2
22 TraesCS5B01G508800 chr5A 90.000 50 5 0 313 362 594348460 594348509 7.020000e-07 65.8
23 TraesCS5B01G508800 chr2D 88.462 52 6 0 313 364 380694242 380694293 2.530000e-06 63.9
24 TraesCS5B01G508800 chr2B 84.615 65 9 1 308 371 450337065 450337129 2.530000e-06 63.9
25 TraesCS5B01G508800 chr2B 84.906 53 7 1 313 365 96093992 96094043 5.000000e-03 52.8
26 TraesCS5B01G508800 chr4B 88.235 51 6 0 314 364 57321288 57321338 9.080000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G508800 chr5B 673987752 673990785 3033 False 5603 5603 100.000000 1 3034 1 chr5B.!!$F2 3033
1 TraesCS5B01G508800 chr5D 533911797 533914743 2946 False 921 1827 84.794667 178 2851 3 chr5D.!!$F2 2673
2 TraesCS5B01G508800 chr4A 637965588 637971888 6300 True 642 1153 83.486000 7 2403 4 chr4A.!!$R2 2396
3 TraesCS5B01G508800 chr4A 637989629 637990352 723 True 322 322 76.322000 6 757 1 chr4A.!!$R1 751
4 TraesCS5B01G508800 chr4A 637979722 637982721 2999 True 317 375 75.993333 6 825 3 chr4A.!!$R3 819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
301 318 0.030638 AGTGACAACAACAATGCGCC 59.969 50.0 4.18 0.0 0.0 6.53 F
302 319 0.030638 GTGACAACAACAATGCGCCT 59.969 50.0 4.18 0.0 0.0 5.52 F
816 6286 0.104197 ATTCCCCTCCTCCCTCCATC 60.104 60.0 0.00 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1819 7579 0.188834 CTAGCTAGGTAGGGCTGGGT 59.811 60.0 19.31 0.00 39.31 4.51 R
1932 7703 0.746923 GACATCTCTGCCTGCATGCA 60.747 55.0 21.29 21.29 39.37 3.96 R
2311 8103 0.035725 CTTGCACAGATCTGGAGCCA 60.036 55.0 28.52 21.08 35.71 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 69 9.687210 TCATTATATCAGTACATAAACACCGTC 57.313 33.333 0.00 0.00 0.00 4.79
88 90 5.119694 GTCTCAACATCTCAAGGGTATTCC 58.880 45.833 0.00 0.00 0.00 3.01
112 114 4.452455 AGACATTTTACTCGAAAGCCACAG 59.548 41.667 0.00 0.00 0.00 3.66
123 125 4.462394 GCCACAGCTCAGACAACA 57.538 55.556 0.00 0.00 35.50 3.33
124 126 1.944778 GCCACAGCTCAGACAACAC 59.055 57.895 0.00 0.00 35.50 3.32
130 133 4.122776 CACAGCTCAGACAACACTTTACT 58.877 43.478 0.00 0.00 0.00 2.24
146 149 6.146673 ACACTTTACTAAACGACAATACTGCC 59.853 38.462 0.00 0.00 0.00 4.85
151 154 2.264005 AACGACAATACTGCCCACAA 57.736 45.000 0.00 0.00 0.00 3.33
160 163 0.106519 ACTGCCCACAACAGCTTTCT 60.107 50.000 0.00 0.00 38.79 2.52
165 168 2.233271 CCCACAACAGCTTTCTCACAT 58.767 47.619 0.00 0.00 0.00 3.21
167 170 2.227388 CCACAACAGCTTTCTCACATCC 59.773 50.000 0.00 0.00 0.00 3.51
172 175 2.040813 ACAGCTTTCTCACATCCCACAT 59.959 45.455 0.00 0.00 0.00 3.21
174 177 2.306805 AGCTTTCTCACATCCCACATCA 59.693 45.455 0.00 0.00 0.00 3.07
175 178 3.084039 GCTTTCTCACATCCCACATCAA 58.916 45.455 0.00 0.00 0.00 2.57
176 179 3.119708 GCTTTCTCACATCCCACATCAAC 60.120 47.826 0.00 0.00 0.00 3.18
178 181 4.371624 TTCTCACATCCCACATCAACTT 57.628 40.909 0.00 0.00 0.00 2.66
181 184 3.420893 TCACATCCCACATCAACTTTCC 58.579 45.455 0.00 0.00 0.00 3.13
182 185 2.493278 CACATCCCACATCAACTTTCCC 59.507 50.000 0.00 0.00 0.00 3.97
183 186 2.109834 ACATCCCACATCAACTTTCCCA 59.890 45.455 0.00 0.00 0.00 4.37
184 187 2.286365 TCCCACATCAACTTTCCCAC 57.714 50.000 0.00 0.00 0.00 4.61
185 188 1.496857 TCCCACATCAACTTTCCCACA 59.503 47.619 0.00 0.00 0.00 4.17
186 189 1.888512 CCCACATCAACTTTCCCACAG 59.111 52.381 0.00 0.00 0.00 3.66
190 199 1.466167 CATCAACTTTCCCACAGCTCG 59.534 52.381 0.00 0.00 0.00 5.03
192 201 1.600916 AACTTTCCCACAGCTCGCC 60.601 57.895 0.00 0.00 0.00 5.54
212 221 1.235281 GCCGAACCAAACACCCTCTC 61.235 60.000 0.00 0.00 0.00 3.20
232 249 3.159472 TCAGCCTTGCATTCACTTTGAT 58.841 40.909 0.00 0.00 0.00 2.57
241 258 8.461222 CCTTGCATTCACTTTGATTACATAGAA 58.539 33.333 0.00 0.00 0.00 2.10
259 276 6.545666 ACATAGAACCAACTGTCATTGACAAA 59.454 34.615 19.44 0.00 42.26 2.83
274 291 2.074576 GACAAAGTTAGACCGGCTTCC 58.925 52.381 0.00 0.00 0.00 3.46
275 292 1.418637 ACAAAGTTAGACCGGCTTCCA 59.581 47.619 0.00 0.00 0.00 3.53
276 293 2.039879 ACAAAGTTAGACCGGCTTCCAT 59.960 45.455 0.00 0.00 0.00 3.41
277 294 2.403252 AAGTTAGACCGGCTTCCATG 57.597 50.000 0.00 0.00 0.00 3.66
294 311 3.389656 TCCATGTAGGAGTGACAACAACA 59.610 43.478 0.00 0.00 43.07 3.33
301 318 0.030638 AGTGACAACAACAATGCGCC 59.969 50.000 4.18 0.00 0.00 6.53
302 319 0.030638 GTGACAACAACAATGCGCCT 59.969 50.000 4.18 0.00 0.00 5.52
304 321 0.310543 GACAACAACAATGCGCCTCA 59.689 50.000 4.18 0.00 0.00 3.86
305 322 0.743688 ACAACAACAATGCGCCTCAA 59.256 45.000 4.18 0.00 0.00 3.02
316 344 4.695560 GCCTCAAGCGTTAGTGGT 57.304 55.556 0.00 0.00 0.00 4.16
342 370 9.753674 TCCAGAGACCTTGATGTAATTTTTATT 57.246 29.630 0.00 0.00 0.00 1.40
369 397 7.045416 TGTTTATGGTGCTATGTACTTTCGAT 58.955 34.615 0.00 0.00 0.00 3.59
370 398 7.011016 TGTTTATGGTGCTATGTACTTTCGATG 59.989 37.037 0.00 0.00 0.00 3.84
374 402 3.616821 GTGCTATGTACTTTCGATGCACA 59.383 43.478 9.45 0.00 45.80 4.57
386 415 2.838386 GATGCACAATCGCAATGTCT 57.162 45.000 0.00 0.00 46.87 3.41
389 418 1.878734 TGCACAATCGCAATGTCTTGA 59.121 42.857 0.00 0.00 39.45 3.02
390 419 2.488937 TGCACAATCGCAATGTCTTGAT 59.511 40.909 0.00 0.00 39.45 2.57
393 422 4.386652 GCACAATCGCAATGTCTTGATTTT 59.613 37.500 0.00 0.00 34.04 1.82
438 481 5.823045 TCGTAGACAGATGACATCACACTAT 59.177 40.000 17.57 1.44 0.00 2.12
439 482 6.990349 TCGTAGACAGATGACATCACACTATA 59.010 38.462 17.57 7.21 0.00 1.31
440 483 7.497909 TCGTAGACAGATGACATCACACTATAA 59.502 37.037 17.57 6.95 0.00 0.98
451 494 7.327518 TGACATCACACTATAACGTTAACACAG 59.672 37.037 12.81 9.57 0.00 3.66
464 507 5.293569 ACGTTAACACAGACCAGAAAGAAAG 59.706 40.000 6.39 0.00 0.00 2.62
465 508 5.522460 CGTTAACACAGACCAGAAAGAAAGA 59.478 40.000 6.39 0.00 0.00 2.52
466 509 6.036735 CGTTAACACAGACCAGAAAGAAAGAA 59.963 38.462 6.39 0.00 0.00 2.52
467 510 7.413657 CGTTAACACAGACCAGAAAGAAAGAAA 60.414 37.037 6.39 0.00 0.00 2.52
468 511 6.442513 AACACAGACCAGAAAGAAAGAAAG 57.557 37.500 0.00 0.00 0.00 2.62
469 512 5.745227 ACACAGACCAGAAAGAAAGAAAGA 58.255 37.500 0.00 0.00 0.00 2.52
470 513 6.180472 ACACAGACCAGAAAGAAAGAAAGAA 58.820 36.000 0.00 0.00 0.00 2.52
471 514 6.659242 ACACAGACCAGAAAGAAAGAAAGAAA 59.341 34.615 0.00 0.00 0.00 2.52
472 515 7.148171 ACACAGACCAGAAAGAAAGAAAGAAAG 60.148 37.037 0.00 0.00 0.00 2.62
473 516 7.066284 CACAGACCAGAAAGAAAGAAAGAAAGA 59.934 37.037 0.00 0.00 0.00 2.52
474 517 7.611855 ACAGACCAGAAAGAAAGAAAGAAAGAA 59.388 33.333 0.00 0.00 0.00 2.52
475 518 8.462016 CAGACCAGAAAGAAAGAAAGAAAGAAA 58.538 33.333 0.00 0.00 0.00 2.52
476 519 8.681806 AGACCAGAAAGAAAGAAAGAAAGAAAG 58.318 33.333 0.00 0.00 0.00 2.62
477 520 8.581253 ACCAGAAAGAAAGAAAGAAAGAAAGA 57.419 30.769 0.00 0.00 0.00 2.52
478 521 9.025041 ACCAGAAAGAAAGAAAGAAAGAAAGAA 57.975 29.630 0.00 0.00 0.00 2.52
479 522 9.860898 CCAGAAAGAAAGAAAGAAAGAAAGAAA 57.139 29.630 0.00 0.00 0.00 2.52
489 532 9.129209 AGAAAGAAAGAAAGAAAGAAAAACACG 57.871 29.630 0.00 0.00 0.00 4.49
491 534 6.621613 AGAAAGAAAGAAAGAAAAACACGCT 58.378 32.000 0.00 0.00 0.00 5.07
657 5759 3.501911 CCGGATTCCAGCCCCCAT 61.502 66.667 0.00 0.00 0.00 4.00
659 5761 2.455565 CGGATTCCAGCCCCCATCT 61.456 63.158 3.09 0.00 0.00 2.90
762 5870 1.060729 GCCCTTTATCTCTCCTCCCC 58.939 60.000 0.00 0.00 0.00 4.81
763 5871 1.735926 CCCTTTATCTCTCCTCCCCC 58.264 60.000 0.00 0.00 0.00 5.40
814 6284 1.004758 CATTCCCCTCCTCCCTCCA 59.995 63.158 0.00 0.00 0.00 3.86
815 6285 0.402566 CATTCCCCTCCTCCCTCCAT 60.403 60.000 0.00 0.00 0.00 3.41
816 6286 0.104197 ATTCCCCTCCTCCCTCCATC 60.104 60.000 0.00 0.00 0.00 3.51
817 6287 2.122189 CCCCTCCTCCCTCCATCC 60.122 72.222 0.00 0.00 0.00 3.51
818 6288 2.122189 CCCTCCTCCCTCCATCCC 60.122 72.222 0.00 0.00 0.00 3.85
819 6289 2.731461 CCCTCCTCCCTCCATCCCT 61.731 68.421 0.00 0.00 0.00 4.20
820 6290 1.152139 CCTCCTCCCTCCATCCCTC 60.152 68.421 0.00 0.00 0.00 4.30
821 6291 1.152139 CTCCTCCCTCCATCCCTCC 60.152 68.421 0.00 0.00 0.00 4.30
859 6338 0.842467 ACTCCTCCTCCAAACCCCTG 60.842 60.000 0.00 0.00 0.00 4.45
861 6340 2.356667 CTCCTCCAAACCCCTGCC 59.643 66.667 0.00 0.00 0.00 4.85
862 6341 3.628646 CTCCTCCAAACCCCTGCCG 62.629 68.421 0.00 0.00 0.00 5.69
863 6342 3.966543 CCTCCAAACCCCTGCCGT 61.967 66.667 0.00 0.00 0.00 5.68
864 6343 2.115266 CTCCAAACCCCTGCCGTT 59.885 61.111 0.00 0.00 0.00 4.44
866 6345 3.302344 CCAAACCCCTGCCGTTGG 61.302 66.667 0.00 0.00 0.00 3.77
913 6644 2.113774 CTGCTCTGGTGGTTGGCA 59.886 61.111 0.00 0.00 0.00 4.92
935 6678 1.457831 GGATCCTCCCGGTAGCAGT 60.458 63.158 3.84 0.00 0.00 4.40
1136 6890 2.100631 CGATCCGGAGCGTGCTTTT 61.101 57.895 32.79 0.00 35.24 2.27
1137 6891 1.425428 GATCCGGAGCGTGCTTTTG 59.575 57.895 11.34 0.00 0.00 2.44
1139 6893 4.404654 CCGGAGCGTGCTTTTGGC 62.405 66.667 0.00 0.00 42.22 4.52
1149 6903 0.108377 TGCTTTTGGCGCTCGATCTA 60.108 50.000 7.64 0.00 45.43 1.98
1150 6904 0.301987 GCTTTTGGCGCTCGATCTAC 59.698 55.000 7.64 0.00 0.00 2.59
1151 6905 0.931005 CTTTTGGCGCTCGATCTACC 59.069 55.000 7.64 0.00 0.00 3.18
1153 6907 3.768185 TTGGCGCTCGATCTACCGC 62.768 63.158 7.64 10.88 45.15 5.68
1155 6909 2.427740 GCGCTCGATCTACCGCTC 60.428 66.667 0.00 0.00 42.83 5.03
1157 6911 1.566882 GCGCTCGATCTACCGCTCTA 61.567 60.000 0.00 0.00 42.83 2.43
1161 6915 2.291190 GCTCGATCTACCGCTCTAAAGT 59.709 50.000 0.00 0.00 0.00 2.66
1163 6917 4.154556 GCTCGATCTACCGCTCTAAAGTAT 59.845 45.833 0.00 0.00 0.00 2.12
1334 7088 2.436646 GGACCCATGGTGAGTGCG 60.437 66.667 11.73 0.00 35.25 5.34
1390 7144 4.253685 TGTTCTTTCCCGATCTGTGATTC 58.746 43.478 0.00 0.00 0.00 2.52
1391 7145 4.020218 TGTTCTTTCCCGATCTGTGATTCT 60.020 41.667 0.00 0.00 0.00 2.40
1392 7146 4.826274 TCTTTCCCGATCTGTGATTCTT 57.174 40.909 0.00 0.00 0.00 2.52
1662 7422 2.203596 ACGACGACCAAGAGGGGT 60.204 61.111 0.00 0.00 46.02 4.95
1776 7536 3.764160 GAAGGCGGCCATCCTCCTG 62.764 68.421 23.09 0.00 46.63 3.86
1905 7676 1.532868 GTGTGAGTGATTTGCTCGCTT 59.467 47.619 7.28 0.00 44.77 4.68
1906 7677 1.532437 TGTGAGTGATTTGCTCGCTTG 59.468 47.619 7.28 0.00 44.77 4.01
1907 7678 0.518636 TGAGTGATTTGCTCGCTTGC 59.481 50.000 0.00 0.00 44.77 4.01
1920 7691 1.293963 CGCTTGCTGCTGCTTGTCTA 61.294 55.000 17.00 0.00 40.48 2.59
1921 7692 0.447011 GCTTGCTGCTGCTTGTCTAG 59.553 55.000 17.00 5.78 40.48 2.43
1951 7722 0.746923 TGCATGCAGGCAGAGATGTC 60.747 55.000 24.07 0.00 39.25 3.06
1953 7724 0.179092 CATGCAGGCAGAGATGTCGA 60.179 55.000 0.00 0.00 0.00 4.20
2073 7858 3.567797 CTTCGCGCCAGCTTAGCC 61.568 66.667 0.00 0.00 42.32 3.93
2127 7915 6.127535 TGTGATGTTACCCAAGTAGTAGTAGC 60.128 42.308 0.00 0.00 0.00 3.58
2147 7939 7.614494 AGTAGCAGTATCCTAGTAGTAGTAGC 58.386 42.308 6.51 0.00 0.00 3.58
2148 7940 6.436738 AGCAGTATCCTAGTAGTAGTAGCA 57.563 41.667 6.51 0.00 0.00 3.49
2149 7941 6.469410 AGCAGTATCCTAGTAGTAGTAGCAG 58.531 44.000 6.51 0.00 0.00 4.24
2154 7946 5.883685 TCCTAGTAGTAGTAGCAGCAGTA 57.116 43.478 6.51 0.00 0.00 2.74
2236 8028 1.307097 GGCTCCAGATCTGTGCAATC 58.693 55.000 27.69 14.47 32.45 2.67
2237 8029 1.134159 GGCTCCAGATCTGTGCAATCT 60.134 52.381 27.69 0.00 33.74 2.40
2239 8031 2.355132 GCTCCAGATCTGTGCAATCTTG 59.645 50.000 24.20 7.92 31.05 3.02
2240 8032 3.607741 CTCCAGATCTGTGCAATCTTGT 58.392 45.455 21.11 0.00 31.05 3.16
2244 8036 2.019984 GATCTGTGCAATCTTGTCCCC 58.980 52.381 0.00 0.00 0.00 4.81
2251 8043 2.892852 TGCAATCTTGTCCCCTTTTCAG 59.107 45.455 0.00 0.00 0.00 3.02
2276 8068 3.699411 AATCTATCCCAGCTGATCTGC 57.301 47.619 17.39 16.18 41.50 4.26
2277 8069 1.346062 TCTATCCCAGCTGATCTGCC 58.654 55.000 17.39 3.77 41.50 4.85
2278 8070 1.132913 TCTATCCCAGCTGATCTGCCT 60.133 52.381 17.39 5.93 41.50 4.75
2280 8072 0.183014 ATCCCAGCTGATCTGCCTTG 59.817 55.000 17.39 12.77 41.50 3.61
2281 8073 1.203441 TCCCAGCTGATCTGCCTTGT 61.203 55.000 17.39 0.00 41.50 3.16
2282 8074 0.323178 CCCAGCTGATCTGCCTTGTT 60.323 55.000 17.39 0.00 41.50 2.83
2283 8075 0.809385 CCAGCTGATCTGCCTTGTTG 59.191 55.000 17.39 11.45 41.50 3.33
2284 8076 1.612462 CCAGCTGATCTGCCTTGTTGA 60.612 52.381 17.39 0.00 41.50 3.18
2285 8077 1.738350 CAGCTGATCTGCCTTGTTGAG 59.262 52.381 19.74 0.00 35.78 3.02
2286 8078 0.450983 GCTGATCTGCCTTGTTGAGC 59.549 55.000 13.26 0.00 0.00 4.26
2287 8079 1.949547 GCTGATCTGCCTTGTTGAGCT 60.950 52.381 13.26 0.00 0.00 4.09
2288 8080 1.738350 CTGATCTGCCTTGTTGAGCTG 59.262 52.381 0.00 0.00 0.00 4.24
2289 8081 1.348696 TGATCTGCCTTGTTGAGCTGA 59.651 47.619 0.00 0.00 40.56 4.26
2290 8082 2.026542 TGATCTGCCTTGTTGAGCTGAT 60.027 45.455 0.00 4.35 46.41 2.90
2291 8083 1.817357 TCTGCCTTGTTGAGCTGATG 58.183 50.000 0.00 0.00 32.79 3.07
2292 8084 1.072806 TCTGCCTTGTTGAGCTGATGT 59.927 47.619 0.00 0.00 32.79 3.06
2294 8086 1.202794 TGCCTTGTTGAGCTGATGTGA 60.203 47.619 0.00 0.00 0.00 3.58
2295 8087 2.089980 GCCTTGTTGAGCTGATGTGAT 58.910 47.619 0.00 0.00 0.00 3.06
2296 8088 2.159421 GCCTTGTTGAGCTGATGTGATG 60.159 50.000 0.00 0.00 0.00 3.07
2297 8089 3.340928 CCTTGTTGAGCTGATGTGATGA 58.659 45.455 0.00 0.00 0.00 2.92
2298 8090 3.754850 CCTTGTTGAGCTGATGTGATGAA 59.245 43.478 0.00 0.00 0.00 2.57
2299 8091 4.398358 CCTTGTTGAGCTGATGTGATGAAT 59.602 41.667 0.00 0.00 0.00 2.57
2300 8092 5.448768 CCTTGTTGAGCTGATGTGATGAATC 60.449 44.000 0.00 0.00 0.00 2.52
2304 8096 5.093849 TGAGCTGATGTGATGAATCTGAA 57.906 39.130 0.00 0.00 0.00 3.02
2311 8103 7.415318 GCTGATGTGATGAATCTGAATCTTTGT 60.415 37.037 0.00 0.00 0.00 2.83
2338 8132 1.066286 AGATCTGTGCAAGCACTCTCC 60.066 52.381 23.82 11.90 46.30 3.71
2399 8193 3.056328 AAGCGCCCGCCTTTTCTC 61.056 61.111 2.29 0.00 43.17 2.87
2403 8197 2.399356 CGCCCGCCTTTTCTCTTCC 61.399 63.158 0.00 0.00 0.00 3.46
2405 8199 1.378646 CCCGCCTTTTCTCTTCCCC 60.379 63.158 0.00 0.00 0.00 4.81
2406 8200 1.745489 CCGCCTTTTCTCTTCCCCG 60.745 63.158 0.00 0.00 0.00 5.73
2407 8201 1.003718 CGCCTTTTCTCTTCCCCGT 60.004 57.895 0.00 0.00 0.00 5.28
2408 8202 1.298859 CGCCTTTTCTCTTCCCCGTG 61.299 60.000 0.00 0.00 0.00 4.94
2409 8203 0.960861 GCCTTTTCTCTTCCCCGTGG 60.961 60.000 0.00 0.00 0.00 4.94
2410 8204 0.322546 CCTTTTCTCTTCCCCGTGGG 60.323 60.000 0.00 0.00 46.11 4.61
2445 8239 1.972872 AATTCATCCCAGGTGATCGC 58.027 50.000 0.00 0.00 0.00 4.58
2446 8240 0.109342 ATTCATCCCAGGTGATCGCC 59.891 55.000 18.01 18.01 0.00 5.54
2447 8241 0.982852 TTCATCCCAGGTGATCGCCT 60.983 55.000 22.49 22.49 39.99 5.52
2482 8281 0.607620 TCTGATGTGATGGTGCACGA 59.392 50.000 11.45 7.55 41.63 4.35
2484 8283 1.020861 TGATGTGATGGTGCACGAGC 61.021 55.000 10.42 10.42 41.63 5.03
2506 8305 1.299976 GTTTCTGCCCGGGATCTGT 59.700 57.895 29.31 0.00 0.00 3.41
2507 8306 0.322546 GTTTCTGCCCGGGATCTGTT 60.323 55.000 29.31 0.00 0.00 3.16
2510 8309 1.450312 CTGCCCGGGATCTGTTGTC 60.450 63.158 29.31 2.71 0.00 3.18
2635 8437 1.228154 AAAAGTCAGCACCCGGTCC 60.228 57.895 0.00 0.00 0.00 4.46
2637 8439 2.113243 AAAGTCAGCACCCGGTCCTC 62.113 60.000 0.00 0.00 0.00 3.71
2638 8440 2.997897 GTCAGCACCCGGTCCTCT 60.998 66.667 0.00 0.00 0.00 3.69
2641 8443 1.376037 CAGCACCCGGTCCTCTTTC 60.376 63.158 0.00 0.00 0.00 2.62
2642 8444 1.536662 AGCACCCGGTCCTCTTTCT 60.537 57.895 0.00 0.00 0.00 2.52
2643 8445 0.252103 AGCACCCGGTCCTCTTTCTA 60.252 55.000 0.00 0.00 0.00 2.10
2658 8460 0.610174 TTCTACACCCTCTGCTGCTG 59.390 55.000 0.00 0.00 0.00 4.41
2663 8465 2.436292 CCCTCTGCTGCTGCACTC 60.436 66.667 14.93 0.00 45.31 3.51
2668 8470 2.281276 TGCTGCTGCACTCCACTG 60.281 61.111 14.93 0.00 45.31 3.66
2677 8479 1.070275 CACTCCACTGCACTGCTGA 59.930 57.895 14.30 0.00 0.00 4.26
2678 8480 0.321387 CACTCCACTGCACTGCTGAT 60.321 55.000 14.30 0.00 0.00 2.90
2679 8481 0.321387 ACTCCACTGCACTGCTGATG 60.321 55.000 14.30 8.62 0.00 3.07
2680 8482 1.645704 CTCCACTGCACTGCTGATGC 61.646 60.000 14.30 4.53 43.68 3.91
2693 8495 0.538584 CTGATGCCTGTCACCAGCTA 59.461 55.000 0.00 0.00 37.38 3.32
2694 8496 0.538584 TGATGCCTGTCACCAGCTAG 59.461 55.000 0.00 0.00 37.38 3.42
2737 8539 0.898320 CTGACACTGGTAGGAGTGGG 59.102 60.000 0.00 0.00 46.56 4.61
2744 8546 3.408853 GTAGGAGTGGGGTGGGGC 61.409 72.222 0.00 0.00 0.00 5.80
2784 8590 5.163281 TCTACTGGAGTAGTATCCCGATC 57.837 47.826 12.51 0.00 46.08 3.69
2792 8598 2.757894 AGTATCCCGATCTGTGACCT 57.242 50.000 0.00 0.00 0.00 3.85
2845 8659 2.524306 TGGAATTTGCTTGTTCGGGAT 58.476 42.857 0.00 0.00 0.00 3.85
2851 8665 1.971167 GCTTGTTCGGGATGGTGCA 60.971 57.895 0.00 0.00 0.00 4.57
2852 8666 1.926511 GCTTGTTCGGGATGGTGCAG 61.927 60.000 0.00 0.00 0.00 4.41
2853 8667 0.321564 CTTGTTCGGGATGGTGCAGA 60.322 55.000 0.00 0.00 0.00 4.26
2854 8668 0.321564 TTGTTCGGGATGGTGCAGAG 60.322 55.000 0.00 0.00 0.00 3.35
2855 8669 2.109126 GTTCGGGATGGTGCAGAGC 61.109 63.158 0.00 0.00 0.00 4.09
2856 8670 3.329542 TTCGGGATGGTGCAGAGCC 62.330 63.158 0.00 0.00 0.00 4.70
2857 8671 4.864334 CGGGATGGTGCAGAGCCC 62.864 72.222 8.69 8.69 35.40 5.19
2858 8672 3.731728 GGGATGGTGCAGAGCCCA 61.732 66.667 13.16 5.20 38.68 5.36
2859 8673 2.439156 GGATGGTGCAGAGCCCAC 60.439 66.667 0.00 0.00 33.27 4.61
2860 8674 2.821366 GATGGTGCAGAGCCCACG 60.821 66.667 0.00 0.00 33.27 4.94
2861 8675 4.415150 ATGGTGCAGAGCCCACGG 62.415 66.667 0.00 0.00 33.27 4.94
2864 8678 4.329545 GTGCAGAGCCCACGGGAA 62.330 66.667 6.21 0.00 37.50 3.97
2865 8679 3.329889 TGCAGAGCCCACGGGAAT 61.330 61.111 6.21 0.00 37.50 3.01
2866 8680 2.514824 GCAGAGCCCACGGGAATC 60.515 66.667 6.21 2.85 37.50 2.52
2867 8681 2.190578 CAGAGCCCACGGGAATCC 59.809 66.667 6.21 0.00 37.50 3.01
2868 8682 3.090532 AGAGCCCACGGGAATCCC 61.091 66.667 8.64 8.64 41.09 3.85
2877 8691 2.919043 GGGAATCCCGTGATGGCT 59.081 61.111 0.90 0.00 32.13 4.75
2878 8692 1.227973 GGGAATCCCGTGATGGCTC 60.228 63.158 0.90 0.00 32.13 4.70
2879 8693 1.227973 GGAATCCCGTGATGGCTCC 60.228 63.158 0.00 0.00 35.87 4.70
2880 8694 1.227973 GAATCCCGTGATGGCTCCC 60.228 63.158 0.00 0.00 35.87 4.30
2881 8695 2.682582 GAATCCCGTGATGGCTCCCC 62.683 65.000 0.00 0.00 35.87 4.81
2882 8696 3.721172 ATCCCGTGATGGCTCCCCT 62.721 63.158 0.00 0.00 35.87 4.79
2883 8697 4.181010 CCCGTGATGGCTCCCCTG 62.181 72.222 0.00 0.00 35.87 4.45
2884 8698 4.864334 CCGTGATGGCTCCCCTGC 62.864 72.222 0.00 0.00 0.00 4.85
2886 8700 4.101448 GTGATGGCTCCCCTGCGT 62.101 66.667 0.00 0.00 0.00 5.24
2887 8701 4.100084 TGATGGCTCCCCTGCGTG 62.100 66.667 0.00 0.00 0.00 5.34
2893 8707 4.864334 CTCCCCTGCGTGCATCCC 62.864 72.222 0.00 0.00 0.00 3.85
2895 8709 4.864334 CCCCTGCGTGCATCCCTC 62.864 72.222 0.00 0.00 0.00 4.30
2896 8710 4.100084 CCCTGCGTGCATCCCTCA 62.100 66.667 0.00 0.00 0.00 3.86
2897 8711 2.191375 CCTGCGTGCATCCCTCAT 59.809 61.111 0.00 0.00 0.00 2.90
2898 8712 1.890979 CCTGCGTGCATCCCTCATC 60.891 63.158 0.00 0.00 0.00 2.92
2899 8713 1.145598 CTGCGTGCATCCCTCATCT 59.854 57.895 0.00 0.00 0.00 2.90
2900 8714 0.463295 CTGCGTGCATCCCTCATCTT 60.463 55.000 0.00 0.00 0.00 2.40
2901 8715 0.745486 TGCGTGCATCCCTCATCTTG 60.745 55.000 0.00 0.00 0.00 3.02
2902 8716 2.020131 CGTGCATCCCTCATCTTGC 58.980 57.895 0.00 0.00 35.67 4.01
2903 8717 1.442526 CGTGCATCCCTCATCTTGCC 61.443 60.000 0.00 0.00 34.20 4.52
2904 8718 1.105759 GTGCATCCCTCATCTTGCCC 61.106 60.000 0.00 0.00 34.20 5.36
2905 8719 1.895707 GCATCCCTCATCTTGCCCG 60.896 63.158 0.00 0.00 0.00 6.13
2906 8720 1.895707 CATCCCTCATCTTGCCCGC 60.896 63.158 0.00 0.00 0.00 6.13
2907 8721 3.466791 ATCCCTCATCTTGCCCGCG 62.467 63.158 0.00 0.00 0.00 6.46
2922 8736 3.793144 GCGCCGGAGCAGAAGTTG 61.793 66.667 26.33 0.00 39.83 3.16
2923 8737 3.121030 CGCCGGAGCAGAAGTTGG 61.121 66.667 5.05 0.00 39.83 3.77
2924 8738 2.032681 GCCGGAGCAGAAGTTGGT 59.967 61.111 5.05 0.00 41.02 3.67
2925 8739 2.328099 GCCGGAGCAGAAGTTGGTG 61.328 63.158 5.05 0.00 37.72 4.17
2926 8740 2.328099 CCGGAGCAGAAGTTGGTGC 61.328 63.158 0.00 0.00 41.60 5.01
2931 8745 3.210857 GCAGAAGTTGGTGCTACGA 57.789 52.632 0.00 0.00 36.71 3.43
2932 8746 1.726853 GCAGAAGTTGGTGCTACGAT 58.273 50.000 0.00 0.00 36.71 3.73
2933 8747 1.394917 GCAGAAGTTGGTGCTACGATG 59.605 52.381 0.00 0.00 36.71 3.84
2934 8748 2.002586 CAGAAGTTGGTGCTACGATGG 58.997 52.381 0.00 0.00 0.00 3.51
2935 8749 1.899814 AGAAGTTGGTGCTACGATGGA 59.100 47.619 0.00 0.00 0.00 3.41
2936 8750 2.501723 AGAAGTTGGTGCTACGATGGAT 59.498 45.455 0.00 0.00 0.00 3.41
2937 8751 2.604046 AGTTGGTGCTACGATGGATC 57.396 50.000 0.00 0.00 0.00 3.36
2949 8763 3.592898 CGATGGATCGTGGATGGATAA 57.407 47.619 0.70 0.00 44.74 1.75
2950 8764 4.128925 CGATGGATCGTGGATGGATAAT 57.871 45.455 0.70 0.00 44.74 1.28
2951 8765 5.262588 CGATGGATCGTGGATGGATAATA 57.737 43.478 0.70 0.00 44.74 0.98
2952 8766 5.660460 CGATGGATCGTGGATGGATAATAA 58.340 41.667 0.70 0.00 44.74 1.40
2953 8767 6.283694 CGATGGATCGTGGATGGATAATAAT 58.716 40.000 0.70 0.00 44.74 1.28
2954 8768 6.201615 CGATGGATCGTGGATGGATAATAATG 59.798 42.308 0.70 0.00 44.74 1.90
2955 8769 6.373005 TGGATCGTGGATGGATAATAATGT 57.627 37.500 0.00 0.00 0.00 2.71
2956 8770 6.172630 TGGATCGTGGATGGATAATAATGTG 58.827 40.000 0.00 0.00 0.00 3.21
2957 8771 6.013812 TGGATCGTGGATGGATAATAATGTGA 60.014 38.462 0.00 0.00 0.00 3.58
2958 8772 6.313905 GGATCGTGGATGGATAATAATGTGAC 59.686 42.308 0.00 0.00 0.00 3.67
2959 8773 5.227152 TCGTGGATGGATAATAATGTGACG 58.773 41.667 0.00 0.00 0.00 4.35
2960 8774 4.388773 CGTGGATGGATAATAATGTGACGG 59.611 45.833 0.00 0.00 0.00 4.79
2961 8775 4.695455 GTGGATGGATAATAATGTGACGGG 59.305 45.833 0.00 0.00 0.00 5.28
2962 8776 4.349636 TGGATGGATAATAATGTGACGGGT 59.650 41.667 0.00 0.00 0.00 5.28
2963 8777 4.935808 GGATGGATAATAATGTGACGGGTC 59.064 45.833 0.00 0.00 0.00 4.46
2964 8778 5.280011 GGATGGATAATAATGTGACGGGTCT 60.280 44.000 0.00 0.00 0.00 3.85
2965 8779 4.956085 TGGATAATAATGTGACGGGTCTG 58.044 43.478 0.00 0.00 0.00 3.51
2966 8780 4.202315 TGGATAATAATGTGACGGGTCTGG 60.202 45.833 0.00 0.00 0.00 3.86
2967 8781 2.038387 AATAATGTGACGGGTCTGGC 57.962 50.000 0.00 0.00 0.00 4.85
2968 8782 1.204146 ATAATGTGACGGGTCTGGCT 58.796 50.000 0.00 0.00 0.00 4.75
2969 8783 0.249120 TAATGTGACGGGTCTGGCTG 59.751 55.000 0.00 0.00 0.00 4.85
2970 8784 3.612247 ATGTGACGGGTCTGGCTGC 62.612 63.158 0.00 0.00 0.00 5.25
2971 8785 4.008933 GTGACGGGTCTGGCTGCT 62.009 66.667 0.00 0.00 0.00 4.24
2972 8786 4.007644 TGACGGGTCTGGCTGCTG 62.008 66.667 0.00 0.00 0.00 4.41
2973 8787 4.008933 GACGGGTCTGGCTGCTGT 62.009 66.667 0.00 0.00 0.00 4.40
2974 8788 4.320456 ACGGGTCTGGCTGCTGTG 62.320 66.667 0.00 0.00 0.00 3.66
2976 8790 4.341783 GGGTCTGGCTGCTGTGCT 62.342 66.667 0.00 0.00 0.00 4.40
2977 8791 3.054503 GGTCTGGCTGCTGTGCTG 61.055 66.667 0.00 0.00 0.00 4.41
2978 8792 2.281345 GTCTGGCTGCTGTGCTGT 60.281 61.111 0.00 0.00 0.00 4.40
2979 8793 2.281276 TCTGGCTGCTGTGCTGTG 60.281 61.111 0.00 0.00 0.00 3.66
2980 8794 3.362797 CTGGCTGCTGTGCTGTGG 61.363 66.667 0.00 0.00 0.00 4.17
2981 8795 4.960866 TGGCTGCTGTGCTGTGGG 62.961 66.667 0.00 0.00 0.00 4.61
2991 8805 4.402851 GCTGTGGGCATCTTGTGA 57.597 55.556 0.00 0.00 41.35 3.58
2992 8806 2.877975 GCTGTGGGCATCTTGTGAT 58.122 52.632 0.00 0.00 41.35 3.06
2993 8807 0.737219 GCTGTGGGCATCTTGTGATC 59.263 55.000 0.00 0.00 41.35 2.92
2994 8808 1.386533 CTGTGGGCATCTTGTGATCC 58.613 55.000 0.00 0.00 0.00 3.36
2995 8809 0.994247 TGTGGGCATCTTGTGATCCT 59.006 50.000 0.00 0.00 0.00 3.24
2996 8810 1.340308 TGTGGGCATCTTGTGATCCTG 60.340 52.381 0.00 0.00 0.00 3.86
2997 8811 0.256752 TGGGCATCTTGTGATCCTGG 59.743 55.000 0.00 0.00 0.00 4.45
2998 8812 1.105759 GGGCATCTTGTGATCCTGGC 61.106 60.000 0.00 0.00 0.00 4.85
2999 8813 0.106819 GGCATCTTGTGATCCTGGCT 60.107 55.000 0.00 0.00 0.00 4.75
3000 8814 1.022735 GCATCTTGTGATCCTGGCTG 58.977 55.000 0.00 0.00 0.00 4.85
3001 8815 1.676746 CATCTTGTGATCCTGGCTGG 58.323 55.000 3.65 3.65 37.10 4.85
3002 8816 1.064906 CATCTTGTGATCCTGGCTGGT 60.065 52.381 10.44 0.00 37.07 4.00
3003 8817 0.325933 TCTTGTGATCCTGGCTGGTG 59.674 55.000 10.44 0.00 37.07 4.17
3004 8818 0.679002 CTTGTGATCCTGGCTGGTGG 60.679 60.000 10.44 0.00 37.07 4.61
3005 8819 1.426251 TTGTGATCCTGGCTGGTGGT 61.426 55.000 10.44 0.00 37.07 4.16
3006 8820 1.380302 GTGATCCTGGCTGGTGGTT 59.620 57.895 10.44 0.00 37.07 3.67
3007 8821 0.251341 GTGATCCTGGCTGGTGGTTT 60.251 55.000 10.44 0.00 37.07 3.27
3008 8822 0.251297 TGATCCTGGCTGGTGGTTTG 60.251 55.000 10.44 0.00 37.07 2.93
3009 8823 0.251341 GATCCTGGCTGGTGGTTTGT 60.251 55.000 10.44 0.00 37.07 2.83
3010 8824 0.188342 ATCCTGGCTGGTGGTTTGTT 59.812 50.000 10.44 0.00 37.07 2.83
3011 8825 0.467290 TCCTGGCTGGTGGTTTGTTC 60.467 55.000 10.44 0.00 37.07 3.18
3012 8826 1.463553 CCTGGCTGGTGGTTTGTTCC 61.464 60.000 1.62 0.00 0.00 3.62
3013 8827 1.795170 CTGGCTGGTGGTTTGTTCCG 61.795 60.000 0.00 0.00 0.00 4.30
3014 8828 1.826487 GGCTGGTGGTTTGTTCCGT 60.826 57.895 0.00 0.00 0.00 4.69
3015 8829 1.388837 GGCTGGTGGTTTGTTCCGTT 61.389 55.000 0.00 0.00 0.00 4.44
3016 8830 0.458260 GCTGGTGGTTTGTTCCGTTT 59.542 50.000 0.00 0.00 0.00 3.60
3017 8831 1.134936 GCTGGTGGTTTGTTCCGTTTT 60.135 47.619 0.00 0.00 0.00 2.43
3018 8832 2.535331 CTGGTGGTTTGTTCCGTTTTG 58.465 47.619 0.00 0.00 0.00 2.44
3019 8833 1.893801 TGGTGGTTTGTTCCGTTTTGT 59.106 42.857 0.00 0.00 0.00 2.83
3020 8834 2.299297 TGGTGGTTTGTTCCGTTTTGTT 59.701 40.909 0.00 0.00 0.00 2.83
3021 8835 3.244112 TGGTGGTTTGTTCCGTTTTGTTT 60.244 39.130 0.00 0.00 0.00 2.83
3022 8836 3.123790 GGTGGTTTGTTCCGTTTTGTTTG 59.876 43.478 0.00 0.00 0.00 2.93
3023 8837 2.737252 TGGTTTGTTCCGTTTTGTTTGC 59.263 40.909 0.00 0.00 0.00 3.68
3024 8838 2.222618 GGTTTGTTCCGTTTTGTTTGCG 60.223 45.455 0.00 0.00 0.00 4.85
3025 8839 2.349297 TTGTTCCGTTTTGTTTGCGT 57.651 40.000 0.00 0.00 0.00 5.24
3026 8840 1.897641 TGTTCCGTTTTGTTTGCGTC 58.102 45.000 0.00 0.00 0.00 5.19
3027 8841 0.835120 GTTCCGTTTTGTTTGCGTCG 59.165 50.000 0.00 0.00 0.00 5.12
3028 8842 0.447011 TTCCGTTTTGTTTGCGTCGT 59.553 45.000 0.00 0.00 0.00 4.34
3029 8843 0.247735 TCCGTTTTGTTTGCGTCGTG 60.248 50.000 0.00 0.00 0.00 4.35
3030 8844 1.546673 CGTTTTGTTTGCGTCGTGC 59.453 52.632 0.00 0.00 46.70 5.34
3031 8845 0.859788 CGTTTTGTTTGCGTCGTGCT 60.860 50.000 0.00 0.00 46.63 4.40
3032 8846 0.837605 GTTTTGTTTGCGTCGTGCTC 59.162 50.000 0.00 0.00 46.63 4.26
3033 8847 0.730265 TTTTGTTTGCGTCGTGCTCT 59.270 45.000 0.00 0.00 46.63 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 52 4.986034 TGTTGAGACGGTGTTTATGTACTG 59.014 41.667 0.00 0.00 0.00 2.74
65 67 5.119694 GGAATACCCTTGAGATGTTGAGAC 58.880 45.833 0.00 0.00 0.00 3.36
67 69 5.102953 TGGAATACCCTTGAGATGTTGAG 57.897 43.478 0.00 0.00 35.38 3.02
88 90 4.213270 TGTGGCTTTCGAGTAAAATGTCTG 59.787 41.667 0.00 0.00 0.00 3.51
112 114 5.461078 TCGTTTAGTAAAGTGTTGTCTGAGC 59.539 40.000 0.00 0.00 0.00 4.26
121 123 6.146673 GGCAGTATTGTCGTTTAGTAAAGTGT 59.853 38.462 0.00 0.00 0.00 3.55
122 124 6.401796 GGGCAGTATTGTCGTTTAGTAAAGTG 60.402 42.308 0.00 0.00 0.00 3.16
123 125 5.640783 GGGCAGTATTGTCGTTTAGTAAAGT 59.359 40.000 0.00 0.00 0.00 2.66
124 126 5.640357 TGGGCAGTATTGTCGTTTAGTAAAG 59.360 40.000 0.00 0.00 0.00 1.85
130 133 3.404224 TGTGGGCAGTATTGTCGTTTA 57.596 42.857 0.00 0.00 0.00 2.01
146 149 2.227388 GGATGTGAGAAAGCTGTTGTGG 59.773 50.000 0.00 0.00 0.00 4.17
151 154 1.421268 TGTGGGATGTGAGAAAGCTGT 59.579 47.619 0.00 0.00 0.00 4.40
160 163 3.420893 GGAAAGTTGATGTGGGATGTGA 58.579 45.455 0.00 0.00 0.00 3.58
165 168 1.496857 TGTGGGAAAGTTGATGTGGGA 59.503 47.619 0.00 0.00 0.00 4.37
167 170 1.270550 GCTGTGGGAAAGTTGATGTGG 59.729 52.381 0.00 0.00 0.00 4.17
172 175 0.884704 GCGAGCTGTGGGAAAGTTGA 60.885 55.000 0.00 0.00 0.00 3.18
174 177 1.600916 GGCGAGCTGTGGGAAAGTT 60.601 57.895 0.00 0.00 0.00 2.66
175 178 2.032681 GGCGAGCTGTGGGAAAGT 59.967 61.111 0.00 0.00 0.00 2.66
176 179 3.121030 CGGCGAGCTGTGGGAAAG 61.121 66.667 0.00 0.00 0.00 2.62
190 199 4.337060 GGTGTTTGGTTCGGCGGC 62.337 66.667 7.21 0.00 0.00 6.53
192 201 2.593436 AGGGTGTTTGGTTCGGCG 60.593 61.111 0.00 0.00 0.00 6.46
196 205 1.239347 GCTGAGAGGGTGTTTGGTTC 58.761 55.000 0.00 0.00 0.00 3.62
212 221 3.587797 ATCAAAGTGAATGCAAGGCTG 57.412 42.857 0.00 0.00 0.00 4.85
232 249 7.220740 TGTCAATGACAGTTGGTTCTATGTAA 58.779 34.615 12.63 0.00 37.67 2.41
241 258 6.038271 GTCTAACTTTGTCAATGACAGTTGGT 59.962 38.462 22.96 15.61 43.69 3.67
259 276 1.276622 ACATGGAAGCCGGTCTAACT 58.723 50.000 1.90 0.00 0.00 2.24
274 291 5.692814 CATTGTTGTTGTCACTCCTACATG 58.307 41.667 0.00 0.00 0.00 3.21
275 292 4.216257 GCATTGTTGTTGTCACTCCTACAT 59.784 41.667 0.00 0.00 0.00 2.29
276 293 3.563808 GCATTGTTGTTGTCACTCCTACA 59.436 43.478 0.00 0.00 0.00 2.74
277 294 3.363970 CGCATTGTTGTTGTCACTCCTAC 60.364 47.826 0.00 0.00 0.00 3.18
301 318 1.272490 TCTGGACCACTAACGCTTGAG 59.728 52.381 0.00 0.00 0.00 3.02
302 319 1.272490 CTCTGGACCACTAACGCTTGA 59.728 52.381 0.00 0.00 0.00 3.02
304 321 1.272769 GTCTCTGGACCACTAACGCTT 59.727 52.381 0.00 0.00 36.53 4.68
305 322 0.889306 GTCTCTGGACCACTAACGCT 59.111 55.000 0.00 0.00 36.53 5.07
316 344 9.753674 AATAAAAATTACATCAAGGTCTCTGGA 57.246 29.630 0.00 0.00 0.00 3.86
342 370 8.198778 TCGAAAGTACATAGCACCATAAACATA 58.801 33.333 0.00 0.00 0.00 2.29
351 379 3.001330 GTGCATCGAAAGTACATAGCACC 59.999 47.826 0.00 0.00 43.72 5.01
352 380 4.183539 GTGCATCGAAAGTACATAGCAC 57.816 45.455 0.00 0.00 43.27 4.40
353 381 3.855858 TGTGCATCGAAAGTACATAGCA 58.144 40.909 7.81 0.00 0.00 3.49
369 397 1.878734 TCAAGACATTGCGATTGTGCA 59.121 42.857 0.00 0.00 44.61 4.57
370 398 2.617250 TCAAGACATTGCGATTGTGC 57.383 45.000 0.00 0.00 36.30 4.57
402 431 9.522804 GTCATCTGTCTACGAAGAGAATAAAAT 57.477 33.333 0.00 0.00 30.45 1.82
404 433 8.051901 TGTCATCTGTCTACGAAGAGAATAAA 57.948 34.615 0.00 0.00 30.45 1.40
407 436 6.319911 TGATGTCATCTGTCTACGAAGAGAAT 59.680 38.462 13.90 0.00 30.45 2.40
408 437 5.648092 TGATGTCATCTGTCTACGAAGAGAA 59.352 40.000 13.90 0.00 30.45 2.87
410 439 5.163713 TGTGATGTCATCTGTCTACGAAGAG 60.164 44.000 13.90 0.00 30.45 2.85
412 441 4.795795 GTGTGATGTCATCTGTCTACGAAG 59.204 45.833 13.90 0.00 0.00 3.79
413 442 4.459337 AGTGTGATGTCATCTGTCTACGAA 59.541 41.667 13.90 0.00 0.00 3.85
414 443 4.010349 AGTGTGATGTCATCTGTCTACGA 58.990 43.478 13.90 0.00 0.00 3.43
416 445 7.588123 CGTTATAGTGTGATGTCATCTGTCTAC 59.412 40.741 13.90 4.13 0.00 2.59
417 446 7.282450 ACGTTATAGTGTGATGTCATCTGTCTA 59.718 37.037 13.90 12.16 0.00 2.59
418 447 6.095580 ACGTTATAGTGTGATGTCATCTGTCT 59.904 38.462 13.90 10.65 0.00 3.41
419 448 6.266323 ACGTTATAGTGTGATGTCATCTGTC 58.734 40.000 13.90 5.57 0.00 3.51
420 449 6.208988 ACGTTATAGTGTGATGTCATCTGT 57.791 37.500 13.90 0.00 0.00 3.41
421 450 8.532341 GTTAACGTTATAGTGTGATGTCATCTG 58.468 37.037 9.18 0.00 0.00 2.90
422 451 8.248253 TGTTAACGTTATAGTGTGATGTCATCT 58.752 33.333 9.18 0.00 0.00 2.90
423 452 8.318876 GTGTTAACGTTATAGTGTGATGTCATC 58.681 37.037 9.18 5.83 0.00 2.92
438 481 5.904941 TCTTTCTGGTCTGTGTTAACGTTA 58.095 37.500 3.29 3.29 0.00 3.18
439 482 4.761975 TCTTTCTGGTCTGTGTTAACGTT 58.238 39.130 5.88 5.88 0.00 3.99
440 483 4.395959 TCTTTCTGGTCTGTGTTAACGT 57.604 40.909 0.26 0.00 0.00 3.99
451 494 8.678199 TCTTTCTTTCTTTCTTTCTTTCTGGTC 58.322 33.333 0.00 0.00 0.00 4.02
464 507 7.893236 GCGTGTTTTTCTTTCTTTCTTTCTTTC 59.107 33.333 0.00 0.00 0.00 2.62
465 508 7.598869 AGCGTGTTTTTCTTTCTTTCTTTCTTT 59.401 29.630 0.00 0.00 0.00 2.52
466 509 7.090808 AGCGTGTTTTTCTTTCTTTCTTTCTT 58.909 30.769 0.00 0.00 0.00 2.52
467 510 6.621613 AGCGTGTTTTTCTTTCTTTCTTTCT 58.378 32.000 0.00 0.00 0.00 2.52
468 511 6.526674 TGAGCGTGTTTTTCTTTCTTTCTTTC 59.473 34.615 0.00 0.00 0.00 2.62
469 512 6.308041 GTGAGCGTGTTTTTCTTTCTTTCTTT 59.692 34.615 0.00 0.00 0.00 2.52
470 513 5.800438 GTGAGCGTGTTTTTCTTTCTTTCTT 59.200 36.000 0.00 0.00 0.00 2.52
471 514 5.332707 GTGAGCGTGTTTTTCTTTCTTTCT 58.667 37.500 0.00 0.00 0.00 2.52
472 515 4.202358 CGTGAGCGTGTTTTTCTTTCTTTC 59.798 41.667 0.00 0.00 0.00 2.62
473 516 4.095610 CGTGAGCGTGTTTTTCTTTCTTT 58.904 39.130 0.00 0.00 0.00 2.52
474 517 3.680789 CGTGAGCGTGTTTTTCTTTCTT 58.319 40.909 0.00 0.00 0.00 2.52
475 518 3.319238 CGTGAGCGTGTTTTTCTTTCT 57.681 42.857 0.00 0.00 0.00 2.52
489 532 1.020861 TGATGATGGTGCACGTGAGC 61.021 55.000 22.23 14.34 0.00 4.26
491 534 1.655484 GATGATGATGGTGCACGTGA 58.345 50.000 22.23 1.04 0.00 4.35
497 540 2.281539 TGGATGGATGATGATGGTGC 57.718 50.000 0.00 0.00 0.00 5.01
643 5745 1.355718 TGGAGATGGGGGCTGGAATC 61.356 60.000 0.00 0.00 0.00 2.52
650 5752 1.152461 GGGAAATGGAGATGGGGGC 60.152 63.158 0.00 0.00 0.00 5.80
655 5757 1.133668 GGGTGGAGGGAAATGGAGATG 60.134 57.143 0.00 0.00 0.00 2.90
656 5758 1.226311 GGGTGGAGGGAAATGGAGAT 58.774 55.000 0.00 0.00 0.00 2.75
657 5759 0.121197 AGGGTGGAGGGAAATGGAGA 59.879 55.000 0.00 0.00 0.00 3.71
659 5761 1.466858 AAAGGGTGGAGGGAAATGGA 58.533 50.000 0.00 0.00 0.00 3.41
762 5870 2.764547 GTCGGAGGGAAGGGAGGG 60.765 72.222 0.00 0.00 0.00 4.30
763 5871 2.764547 GGTCGGAGGGAAGGGAGG 60.765 72.222 0.00 0.00 0.00 4.30
764 5872 2.764547 GGGTCGGAGGGAAGGGAG 60.765 72.222 0.00 0.00 0.00 4.30
765 5873 3.607299 TGGGTCGGAGGGAAGGGA 61.607 66.667 0.00 0.00 0.00 4.20
766 5874 3.400054 GTGGGTCGGAGGGAAGGG 61.400 72.222 0.00 0.00 0.00 3.95
767 5875 3.400054 GGTGGGTCGGAGGGAAGG 61.400 72.222 0.00 0.00 0.00 3.46
768 5876 2.606519 TGGTGGGTCGGAGGGAAG 60.607 66.667 0.00 0.00 0.00 3.46
769 5877 2.926242 GTGGTGGGTCGGAGGGAA 60.926 66.667 0.00 0.00 0.00 3.97
839 6318 0.103876 AGGGGTTTGGAGGAGGAGTT 60.104 55.000 0.00 0.00 0.00 3.01
840 6319 0.842467 CAGGGGTTTGGAGGAGGAGT 60.842 60.000 0.00 0.00 0.00 3.85
861 6340 2.202878 ATCGATCGGTGGCCAACG 60.203 61.111 37.39 37.39 44.11 4.10
862 6341 2.237751 CGATCGATCGGTGGCCAAC 61.238 63.158 34.54 12.05 45.93 3.77
863 6342 2.106131 CGATCGATCGGTGGCCAA 59.894 61.111 34.54 0.00 45.93 4.52
872 6351 3.929389 GCACTGGCTCGATCGATC 58.071 61.111 19.78 14.83 36.96 3.69
935 6678 4.147449 CTCCGCCGCCACAGATCA 62.147 66.667 0.00 0.00 0.00 2.92
1094 6848 1.153997 GCTCACCTTCTCGACCGAC 60.154 63.158 0.00 0.00 0.00 4.79
1132 6886 0.931005 GGTAGATCGAGCGCCAAAAG 59.069 55.000 2.29 0.00 0.00 2.27
1139 6893 0.866427 TTAGAGCGGTAGATCGAGCG 59.134 55.000 20.95 20.95 43.05 5.03
1142 6896 4.454847 CCATACTTTAGAGCGGTAGATCGA 59.545 45.833 0.00 0.00 37.94 3.59
1149 6903 4.080526 ACCAAATCCATACTTTAGAGCGGT 60.081 41.667 0.00 0.00 0.00 5.68
1150 6904 4.273480 CACCAAATCCATACTTTAGAGCGG 59.727 45.833 0.00 0.00 0.00 5.52
1151 6905 4.876107 ACACCAAATCCATACTTTAGAGCG 59.124 41.667 0.00 0.00 0.00 5.03
1153 6907 7.921786 TCAACACCAAATCCATACTTTAGAG 57.078 36.000 0.00 0.00 0.00 2.43
1155 6909 8.400947 CAGATCAACACCAAATCCATACTTTAG 58.599 37.037 0.00 0.00 0.00 1.85
1157 6911 6.947733 TCAGATCAACACCAAATCCATACTTT 59.052 34.615 0.00 0.00 0.00 2.66
1161 6915 4.875536 CGTCAGATCAACACCAAATCCATA 59.124 41.667 0.00 0.00 0.00 2.74
1163 6917 3.073678 CGTCAGATCAACACCAAATCCA 58.926 45.455 0.00 0.00 0.00 3.41
1334 7088 3.064416 GATCGGGAGGGATCTGCC 58.936 66.667 0.00 0.00 46.60 4.85
1390 7144 0.658829 CGCCGTAGATCAGCTCGAAG 60.659 60.000 0.00 0.00 0.00 3.79
1391 7145 1.355563 CGCCGTAGATCAGCTCGAA 59.644 57.895 0.00 0.00 0.00 3.71
1392 7146 2.543802 CCGCCGTAGATCAGCTCGA 61.544 63.158 0.00 0.00 0.00 4.04
1425 7179 1.066908 GACTGGATCGAGGCAAGAGAG 59.933 57.143 5.58 0.00 0.00 3.20
1427 7181 3.657956 GACTGGATCGAGGCAAGAG 57.342 57.895 5.58 0.00 0.00 2.85
1620 7380 2.987547 TTCTTGGGCTGCTGCTGC 60.988 61.111 21.42 21.42 39.59 5.25
1621 7381 0.892358 TTCTTCTTGGGCTGCTGCTG 60.892 55.000 15.64 0.77 39.59 4.41
1622 7382 0.608582 CTTCTTCTTGGGCTGCTGCT 60.609 55.000 15.64 0.00 39.59 4.24
1819 7579 0.188834 CTAGCTAGGTAGGGCTGGGT 59.811 60.000 19.31 0.00 39.31 4.51
1828 7588 1.410517 CTTGCTGCTGCTAGCTAGGTA 59.589 52.381 22.10 5.35 42.97 3.08
1857 7618 5.222007 GGATCTCCTCTCATCTCTCTTCTCT 60.222 48.000 0.00 0.00 0.00 3.10
1932 7703 0.746923 GACATCTCTGCCTGCATGCA 60.747 55.000 21.29 21.29 39.37 3.96
2073 7858 6.128418 GCTACTAGGCAAGAAGAAAGAACAAG 60.128 42.308 0.00 0.00 0.00 3.16
2146 7938 3.909430 TGTTACACACTACTACTGCTGC 58.091 45.455 0.00 0.00 0.00 5.25
2147 7939 5.163953 GCAATGTTACACACTACTACTGCTG 60.164 44.000 0.00 0.00 0.00 4.41
2148 7940 4.929808 GCAATGTTACACACTACTACTGCT 59.070 41.667 0.00 0.00 0.00 4.24
2149 7941 4.688879 TGCAATGTTACACACTACTACTGC 59.311 41.667 0.00 0.00 0.00 4.40
2154 7946 4.703897 ACACTGCAATGTTACACACTACT 58.296 39.130 0.00 0.00 0.00 2.57
2236 8028 2.276732 TCAGCTGAAAAGGGGACAAG 57.723 50.000 15.67 0.00 0.00 3.16
2237 8029 2.746279 TTCAGCTGAAAAGGGGACAA 57.254 45.000 26.61 0.00 0.00 3.18
2239 8031 3.425659 AGATTTCAGCTGAAAAGGGGAC 58.574 45.455 37.81 24.65 45.81 4.46
2240 8032 3.814504 AGATTTCAGCTGAAAAGGGGA 57.185 42.857 37.81 20.27 45.81 4.81
2244 8036 5.221009 GCTGGGATAGATTTCAGCTGAAAAG 60.221 44.000 37.81 28.58 45.81 2.27
2276 8068 3.340928 TCATCACATCAGCTCAACAAGG 58.659 45.455 0.00 0.00 0.00 3.61
2277 8069 5.354513 AGATTCATCACATCAGCTCAACAAG 59.645 40.000 0.00 0.00 0.00 3.16
2278 8070 5.123344 CAGATTCATCACATCAGCTCAACAA 59.877 40.000 0.00 0.00 0.00 2.83
2280 8072 4.874396 TCAGATTCATCACATCAGCTCAAC 59.126 41.667 0.00 0.00 0.00 3.18
2281 8073 5.093849 TCAGATTCATCACATCAGCTCAA 57.906 39.130 0.00 0.00 0.00 3.02
2282 8074 4.748277 TCAGATTCATCACATCAGCTCA 57.252 40.909 0.00 0.00 0.00 4.26
2283 8075 5.992829 AGATTCAGATTCATCACATCAGCTC 59.007 40.000 0.00 0.00 0.00 4.09
2284 8076 5.931294 AGATTCAGATTCATCACATCAGCT 58.069 37.500 0.00 0.00 0.00 4.24
2285 8077 6.621316 AAGATTCAGATTCATCACATCAGC 57.379 37.500 0.00 0.00 0.00 4.26
2286 8078 7.910683 CACAAAGATTCAGATTCATCACATCAG 59.089 37.037 0.00 0.00 0.00 2.90
2287 8079 7.148137 CCACAAAGATTCAGATTCATCACATCA 60.148 37.037 0.00 0.00 0.00 3.07
2288 8080 7.194278 CCACAAAGATTCAGATTCATCACATC 58.806 38.462 0.00 0.00 0.00 3.06
2289 8081 6.405508 GCCACAAAGATTCAGATTCATCACAT 60.406 38.462 0.00 0.00 0.00 3.21
2290 8082 5.106038 GCCACAAAGATTCAGATTCATCACA 60.106 40.000 0.00 0.00 0.00 3.58
2291 8083 5.125097 AGCCACAAAGATTCAGATTCATCAC 59.875 40.000 0.00 0.00 0.00 3.06
2292 8084 5.258841 AGCCACAAAGATTCAGATTCATCA 58.741 37.500 0.00 0.00 0.00 3.07
2294 8086 4.643784 GGAGCCACAAAGATTCAGATTCAT 59.356 41.667 0.00 0.00 0.00 2.57
2295 8087 4.012374 GGAGCCACAAAGATTCAGATTCA 58.988 43.478 0.00 0.00 0.00 2.57
2296 8088 4.012374 TGGAGCCACAAAGATTCAGATTC 58.988 43.478 0.00 0.00 0.00 2.52
2297 8089 4.015084 CTGGAGCCACAAAGATTCAGATT 58.985 43.478 0.00 0.00 0.00 2.40
2298 8090 3.265221 TCTGGAGCCACAAAGATTCAGAT 59.735 43.478 0.00 0.00 0.00 2.90
2299 8091 2.639347 TCTGGAGCCACAAAGATTCAGA 59.361 45.455 0.00 0.00 0.00 3.27
2300 8092 3.063510 TCTGGAGCCACAAAGATTCAG 57.936 47.619 0.00 0.00 0.00 3.02
2304 8096 2.575279 ACAGATCTGGAGCCACAAAGAT 59.425 45.455 26.08 0.00 34.19 2.40
2311 8103 0.035725 CTTGCACAGATCTGGAGCCA 60.036 55.000 28.52 21.08 35.71 4.75
2353 8147 3.086733 GGAGCTGGTATGAAGCACC 57.913 57.895 0.00 0.00 42.84 5.01
2355 8149 1.571955 TCTGGAGCTGGTATGAAGCA 58.428 50.000 0.00 0.00 43.37 3.91
2409 8203 2.744352 ATTTCAGCTGGGATTCCTCC 57.256 50.000 15.13 0.00 41.26 4.30
2410 8204 3.624777 TGAATTTCAGCTGGGATTCCTC 58.375 45.455 26.18 13.13 0.00 3.71
2411 8205 3.744940 TGAATTTCAGCTGGGATTCCT 57.255 42.857 26.18 6.58 0.00 3.36
2412 8206 3.320256 GGATGAATTTCAGCTGGGATTCC 59.680 47.826 26.18 17.58 32.54 3.01
2413 8207 3.320256 GGGATGAATTTCAGCTGGGATTC 59.680 47.826 24.22 24.22 32.54 2.52
2414 8208 3.303049 GGGATGAATTTCAGCTGGGATT 58.697 45.455 15.13 13.92 32.54 3.01
2415 8209 2.245546 TGGGATGAATTTCAGCTGGGAT 59.754 45.455 15.13 5.37 32.54 3.85
2416 8210 1.640149 TGGGATGAATTTCAGCTGGGA 59.360 47.619 15.13 2.85 32.54 4.37
2417 8211 2.029623 CTGGGATGAATTTCAGCTGGG 58.970 52.381 15.13 1.82 32.54 4.45
2418 8212 2.029623 CCTGGGATGAATTTCAGCTGG 58.970 52.381 15.13 10.03 32.54 4.85
2445 8239 6.096423 ACATCAGATCAAACATCCATCAAAGG 59.904 38.462 0.00 0.00 0.00 3.11
2446 8240 6.972901 CACATCAGATCAAACATCCATCAAAG 59.027 38.462 0.00 0.00 0.00 2.77
2447 8241 6.660094 TCACATCAGATCAAACATCCATCAAA 59.340 34.615 0.00 0.00 0.00 2.69
2484 8283 3.622060 ATCCCGGGCAGAAACACCG 62.622 63.158 18.49 0.00 46.79 4.94
2493 8292 2.668632 GACAACAGATCCCGGGCA 59.331 61.111 18.49 5.14 0.00 5.36
2497 8296 2.885644 CGCCGACAACAGATCCCG 60.886 66.667 0.00 0.00 0.00 5.14
2519 8318 1.770658 TGGAATGCTACTCATCTGGGG 59.229 52.381 0.00 0.00 33.40 4.96
2520 8319 3.784511 ATGGAATGCTACTCATCTGGG 57.215 47.619 0.00 0.00 33.40 4.45
2521 8320 4.070716 GGAATGGAATGCTACTCATCTGG 58.929 47.826 0.00 0.00 33.40 3.86
2522 8321 3.744942 CGGAATGGAATGCTACTCATCTG 59.255 47.826 0.00 0.00 33.40 2.90
2523 8322 3.389329 ACGGAATGGAATGCTACTCATCT 59.611 43.478 0.00 0.00 33.40 2.90
2635 8437 2.676463 GCAGCAGAGGGTGTAGAAAGAG 60.676 54.545 0.00 0.00 44.31 2.85
2637 8439 1.277557 AGCAGCAGAGGGTGTAGAAAG 59.722 52.381 0.00 0.00 44.31 2.62
2638 8440 1.002430 CAGCAGCAGAGGGTGTAGAAA 59.998 52.381 0.00 0.00 44.31 2.52
2641 8443 1.449246 GCAGCAGCAGAGGGTGTAG 60.449 63.158 0.00 0.00 44.31 2.74
2642 8444 2.665000 GCAGCAGCAGAGGGTGTA 59.335 61.111 0.00 0.00 44.31 2.90
2658 8460 2.281345 AGCAGTGCAGTGGAGTGC 60.281 61.111 30.79 30.79 44.27 4.40
2663 8465 2.697761 GGCATCAGCAGTGCAGTGG 61.698 63.158 22.71 7.52 44.25 4.00
2668 8470 1.673337 TGACAGGCATCAGCAGTGC 60.673 57.895 7.13 7.13 44.61 4.40
2699 8501 2.126307 GAGTGAGCAAGCGAGCGA 60.126 61.111 0.00 0.00 40.15 4.93
2704 8506 0.598419 TGTCAGTGAGTGAGCAAGCG 60.598 55.000 0.00 0.00 35.13 4.68
2708 8510 0.390492 CCAGTGTCAGTGAGTGAGCA 59.610 55.000 9.36 0.00 35.13 4.26
2709 8511 0.390860 ACCAGTGTCAGTGAGTGAGC 59.609 55.000 9.36 0.00 35.13 4.26
2710 8512 2.230025 CCTACCAGTGTCAGTGAGTGAG 59.770 54.545 9.36 1.15 35.13 3.51
2711 8513 2.158519 TCCTACCAGTGTCAGTGAGTGA 60.159 50.000 9.36 0.00 0.00 3.41
2737 8539 4.191015 GGATTCCTCCGCCCCACC 62.191 72.222 0.00 0.00 0.00 4.61
2744 8546 2.330216 AGATAGGGTTGGATTCCTCCG 58.670 52.381 3.95 0.00 45.37 4.63
2784 8590 4.514577 CGGCCCGCTAGGTCACAG 62.515 72.222 0.00 0.00 42.15 3.66
2802 8608 4.360405 CCTTTCACCCCCACCCCG 62.360 72.222 0.00 0.00 0.00 5.73
2803 8609 4.696805 GCCTTTCACCCCCACCCC 62.697 72.222 0.00 0.00 0.00 4.95
2851 8665 3.090532 GGGATTCCCGTGGGCTCT 61.091 66.667 5.84 0.00 32.13 4.09
2860 8674 1.227973 GAGCCATCACGGGATTCCC 60.228 63.158 12.14 12.14 41.09 3.97
2861 8675 1.227973 GGAGCCATCACGGGATTCC 60.228 63.158 0.00 0.00 34.06 3.01
2862 8676 1.227973 GGGAGCCATCACGGGATTC 60.228 63.158 0.00 0.00 34.06 2.52
2863 8677 2.757124 GGGGAGCCATCACGGGATT 61.757 63.158 0.00 0.00 34.06 3.01
2864 8678 3.171388 GGGGAGCCATCACGGGAT 61.171 66.667 0.00 0.00 34.06 3.85
2865 8679 4.414956 AGGGGAGCCATCACGGGA 62.415 66.667 0.00 0.00 34.06 5.14
2866 8680 4.181010 CAGGGGAGCCATCACGGG 62.181 72.222 0.00 0.00 34.06 5.28
2867 8681 4.864334 GCAGGGGAGCCATCACGG 62.864 72.222 0.00 0.00 38.11 4.94
2869 8683 4.101448 ACGCAGGGGAGCCATCAC 62.101 66.667 0.00 0.00 0.00 3.06
2870 8684 4.100084 CACGCAGGGGAGCCATCA 62.100 66.667 0.00 0.00 0.00 3.07
2876 8690 4.864334 GGGATGCACGCAGGGGAG 62.864 72.222 0.00 0.00 0.00 4.30
2878 8692 4.864334 GAGGGATGCACGCAGGGG 62.864 72.222 0.00 0.00 0.00 4.79
2879 8693 3.411114 ATGAGGGATGCACGCAGGG 62.411 63.158 0.00 0.00 0.00 4.45
2880 8694 1.890979 GATGAGGGATGCACGCAGG 60.891 63.158 0.00 0.00 0.00 4.85
2881 8695 0.463295 AAGATGAGGGATGCACGCAG 60.463 55.000 0.00 0.00 0.00 5.18
2882 8696 0.745486 CAAGATGAGGGATGCACGCA 60.745 55.000 0.00 0.00 0.00 5.24
2883 8697 2.020131 CAAGATGAGGGATGCACGC 58.980 57.895 0.00 0.00 0.00 5.34
2884 8698 1.442526 GGCAAGATGAGGGATGCACG 61.443 60.000 0.00 0.00 40.51 5.34
2885 8699 1.105759 GGGCAAGATGAGGGATGCAC 61.106 60.000 0.00 0.00 40.51 4.57
2886 8700 1.228228 GGGCAAGATGAGGGATGCA 59.772 57.895 0.00 0.00 40.51 3.96
2887 8701 1.895707 CGGGCAAGATGAGGGATGC 60.896 63.158 0.00 0.00 38.06 3.91
2888 8702 1.895707 GCGGGCAAGATGAGGGATG 60.896 63.158 0.00 0.00 0.00 3.51
2889 8703 2.512896 GCGGGCAAGATGAGGGAT 59.487 61.111 0.00 0.00 0.00 3.85
2890 8704 4.161295 CGCGGGCAAGATGAGGGA 62.161 66.667 0.00 0.00 0.00 4.20
2905 8719 3.793144 CAACTTCTGCTCCGGCGC 61.793 66.667 10.14 10.14 42.25 6.53
2906 8720 3.121030 CCAACTTCTGCTCCGGCG 61.121 66.667 0.00 0.00 42.25 6.46
2907 8721 2.032681 ACCAACTTCTGCTCCGGC 59.967 61.111 0.00 0.00 39.26 6.13
2908 8722 2.328099 GCACCAACTTCTGCTCCGG 61.328 63.158 0.00 0.00 0.00 5.14
2909 8723 0.037326 TAGCACCAACTTCTGCTCCG 60.037 55.000 0.00 0.00 42.86 4.63
2910 8724 1.443802 GTAGCACCAACTTCTGCTCC 58.556 55.000 0.00 0.00 42.86 4.70
2911 8725 1.071605 CGTAGCACCAACTTCTGCTC 58.928 55.000 0.00 0.00 42.86 4.26
2912 8726 0.679505 TCGTAGCACCAACTTCTGCT 59.320 50.000 0.00 0.00 45.76 4.24
2913 8727 1.394917 CATCGTAGCACCAACTTCTGC 59.605 52.381 0.00 0.00 0.00 4.26
2914 8728 2.002586 CCATCGTAGCACCAACTTCTG 58.997 52.381 0.00 0.00 0.00 3.02
2915 8729 1.899814 TCCATCGTAGCACCAACTTCT 59.100 47.619 0.00 0.00 0.00 2.85
2916 8730 2.380084 TCCATCGTAGCACCAACTTC 57.620 50.000 0.00 0.00 0.00 3.01
2917 8731 2.738643 CGATCCATCGTAGCACCAACTT 60.739 50.000 0.55 0.00 44.74 2.66
2918 8732 1.202417 CGATCCATCGTAGCACCAACT 60.202 52.381 0.55 0.00 44.74 3.16
2919 8733 1.209128 CGATCCATCGTAGCACCAAC 58.791 55.000 0.55 0.00 44.74 3.77
2920 8734 3.659850 CGATCCATCGTAGCACCAA 57.340 52.632 0.55 0.00 44.74 3.67
2930 8744 7.011763 CACATTATTATCCATCCACGATCCATC 59.988 40.741 0.00 0.00 0.00 3.51
2931 8745 6.825213 CACATTATTATCCATCCACGATCCAT 59.175 38.462 0.00 0.00 0.00 3.41
2932 8746 6.013812 TCACATTATTATCCATCCACGATCCA 60.014 38.462 0.00 0.00 0.00 3.41
2933 8747 6.313905 GTCACATTATTATCCATCCACGATCC 59.686 42.308 0.00 0.00 0.00 3.36
2934 8748 6.035005 CGTCACATTATTATCCATCCACGATC 59.965 42.308 0.00 0.00 0.00 3.69
2935 8749 5.869344 CGTCACATTATTATCCATCCACGAT 59.131 40.000 0.00 0.00 0.00 3.73
2936 8750 5.227152 CGTCACATTATTATCCATCCACGA 58.773 41.667 0.00 0.00 0.00 4.35
2937 8751 4.388773 CCGTCACATTATTATCCATCCACG 59.611 45.833 0.00 0.00 0.00 4.94
2938 8752 4.695455 CCCGTCACATTATTATCCATCCAC 59.305 45.833 0.00 0.00 0.00 4.02
2939 8753 4.349636 ACCCGTCACATTATTATCCATCCA 59.650 41.667 0.00 0.00 0.00 3.41
2940 8754 4.906618 ACCCGTCACATTATTATCCATCC 58.093 43.478 0.00 0.00 0.00 3.51
2941 8755 5.639506 CAGACCCGTCACATTATTATCCATC 59.360 44.000 0.00 0.00 0.00 3.51
2942 8756 5.513094 CCAGACCCGTCACATTATTATCCAT 60.513 44.000 0.00 0.00 0.00 3.41
2943 8757 4.202315 CCAGACCCGTCACATTATTATCCA 60.202 45.833 0.00 0.00 0.00 3.41
2944 8758 4.315803 CCAGACCCGTCACATTATTATCC 58.684 47.826 0.00 0.00 0.00 2.59
2945 8759 3.746492 GCCAGACCCGTCACATTATTATC 59.254 47.826 0.00 0.00 0.00 1.75
2946 8760 3.391296 AGCCAGACCCGTCACATTATTAT 59.609 43.478 0.00 0.00 0.00 1.28
2947 8761 2.769663 AGCCAGACCCGTCACATTATTA 59.230 45.455 0.00 0.00 0.00 0.98
2948 8762 1.559682 AGCCAGACCCGTCACATTATT 59.440 47.619 0.00 0.00 0.00 1.40
2949 8763 1.134401 CAGCCAGACCCGTCACATTAT 60.134 52.381 0.00 0.00 0.00 1.28
2950 8764 0.249120 CAGCCAGACCCGTCACATTA 59.751 55.000 0.00 0.00 0.00 1.90
2951 8765 1.003355 CAGCCAGACCCGTCACATT 60.003 57.895 0.00 0.00 0.00 2.71
2952 8766 2.665000 CAGCCAGACCCGTCACAT 59.335 61.111 0.00 0.00 0.00 3.21
2953 8767 4.314440 GCAGCCAGACCCGTCACA 62.314 66.667 0.00 0.00 0.00 3.58
2954 8768 4.008933 AGCAGCCAGACCCGTCAC 62.009 66.667 0.00 0.00 0.00 3.67
2955 8769 4.007644 CAGCAGCCAGACCCGTCA 62.008 66.667 0.00 0.00 0.00 4.35
2956 8770 4.008933 ACAGCAGCCAGACCCGTC 62.009 66.667 0.00 0.00 0.00 4.79
2957 8771 4.320456 CACAGCAGCCAGACCCGT 62.320 66.667 0.00 0.00 0.00 5.28
2959 8773 4.341783 AGCACAGCAGCCAGACCC 62.342 66.667 0.00 0.00 34.23 4.46
2960 8774 3.054503 CAGCACAGCAGCCAGACC 61.055 66.667 0.00 0.00 34.23 3.85
2961 8775 2.281345 ACAGCACAGCAGCCAGAC 60.281 61.111 0.00 0.00 34.23 3.51
2962 8776 2.281276 CACAGCACAGCAGCCAGA 60.281 61.111 0.00 0.00 34.23 3.86
2963 8777 3.362797 CCACAGCACAGCAGCCAG 61.363 66.667 0.00 0.00 34.23 4.85
2964 8778 4.960866 CCCACAGCACAGCAGCCA 62.961 66.667 0.00 0.00 34.23 4.75
2974 8788 0.737219 GATCACAAGATGCCCACAGC 59.263 55.000 0.00 0.00 44.14 4.40
2975 8789 1.064906 AGGATCACAAGATGCCCACAG 60.065 52.381 0.00 0.00 42.97 3.66
2976 8790 0.994247 AGGATCACAAGATGCCCACA 59.006 50.000 0.00 0.00 42.97 4.17
2977 8791 1.386533 CAGGATCACAAGATGCCCAC 58.613 55.000 0.00 0.00 42.97 4.61
2978 8792 0.256752 CCAGGATCACAAGATGCCCA 59.743 55.000 0.00 0.00 42.97 5.36
2979 8793 1.105759 GCCAGGATCACAAGATGCCC 61.106 60.000 0.00 0.00 42.97 5.36
2980 8794 0.106819 AGCCAGGATCACAAGATGCC 60.107 55.000 0.00 0.00 42.97 4.40
2981 8795 1.022735 CAGCCAGGATCACAAGATGC 58.977 55.000 0.00 0.00 42.36 3.91
2982 8796 1.064906 ACCAGCCAGGATCACAAGATG 60.065 52.381 0.00 0.00 41.22 2.90
2983 8797 1.064906 CACCAGCCAGGATCACAAGAT 60.065 52.381 0.00 0.00 41.22 2.40
2984 8798 0.325933 CACCAGCCAGGATCACAAGA 59.674 55.000 0.00 0.00 41.22 3.02
2985 8799 0.679002 CCACCAGCCAGGATCACAAG 60.679 60.000 0.00 0.00 41.22 3.16
2986 8800 1.379916 CCACCAGCCAGGATCACAA 59.620 57.895 0.00 0.00 41.22 3.33
2987 8801 1.426251 AACCACCAGCCAGGATCACA 61.426 55.000 0.00 0.00 41.22 3.58
2988 8802 0.251341 AAACCACCAGCCAGGATCAC 60.251 55.000 0.00 0.00 41.22 3.06
2989 8803 0.251297 CAAACCACCAGCCAGGATCA 60.251 55.000 0.00 0.00 41.22 2.92
2990 8804 0.251341 ACAAACCACCAGCCAGGATC 60.251 55.000 0.00 0.00 41.22 3.36
2991 8805 0.188342 AACAAACCACCAGCCAGGAT 59.812 50.000 0.00 0.00 41.22 3.24
2992 8806 0.467290 GAACAAACCACCAGCCAGGA 60.467 55.000 0.00 0.00 41.22 3.86
2993 8807 1.463553 GGAACAAACCACCAGCCAGG 61.464 60.000 0.00 0.00 45.67 4.45
2994 8808 1.795170 CGGAACAAACCACCAGCCAG 61.795 60.000 0.00 0.00 0.00 4.85
2995 8809 1.826054 CGGAACAAACCACCAGCCA 60.826 57.895 0.00 0.00 0.00 4.75
2996 8810 1.388837 AACGGAACAAACCACCAGCC 61.389 55.000 0.00 0.00 0.00 4.85
2997 8811 0.458260 AAACGGAACAAACCACCAGC 59.542 50.000 0.00 0.00 0.00 4.85
2998 8812 2.094442 ACAAAACGGAACAAACCACCAG 60.094 45.455 0.00 0.00 0.00 4.00
2999 8813 1.893801 ACAAAACGGAACAAACCACCA 59.106 42.857 0.00 0.00 0.00 4.17
3000 8814 2.658373 ACAAAACGGAACAAACCACC 57.342 45.000 0.00 0.00 0.00 4.61
3001 8815 3.423776 GCAAACAAAACGGAACAAACCAC 60.424 43.478 0.00 0.00 0.00 4.16
3002 8816 2.737252 GCAAACAAAACGGAACAAACCA 59.263 40.909 0.00 0.00 0.00 3.67
3003 8817 2.222618 CGCAAACAAAACGGAACAAACC 60.223 45.455 0.00 0.00 0.00 3.27
3004 8818 2.409041 ACGCAAACAAAACGGAACAAAC 59.591 40.909 0.00 0.00 0.00 2.93
3005 8819 2.662156 GACGCAAACAAAACGGAACAAA 59.338 40.909 0.00 0.00 0.00 2.83
3006 8820 2.251893 GACGCAAACAAAACGGAACAA 58.748 42.857 0.00 0.00 0.00 2.83
3007 8821 1.790838 CGACGCAAACAAAACGGAACA 60.791 47.619 0.00 0.00 0.00 3.18
3008 8822 0.835120 CGACGCAAACAAAACGGAAC 59.165 50.000 0.00 0.00 0.00 3.62
3009 8823 0.447011 ACGACGCAAACAAAACGGAA 59.553 45.000 0.00 0.00 0.00 4.30
3010 8824 0.247735 CACGACGCAAACAAAACGGA 60.248 50.000 0.00 0.00 0.00 4.69
3011 8825 1.793480 GCACGACGCAAACAAAACGG 61.793 55.000 0.00 0.00 41.79 4.44
3012 8826 0.859788 AGCACGACGCAAACAAAACG 60.860 50.000 0.00 0.00 46.13 3.60
3013 8827 0.837605 GAGCACGACGCAAACAAAAC 59.162 50.000 0.00 0.00 46.13 2.43
3014 8828 0.730265 AGAGCACGACGCAAACAAAA 59.270 45.000 0.00 0.00 46.13 2.44
3015 8829 2.389386 AGAGCACGACGCAAACAAA 58.611 47.368 0.00 0.00 46.13 2.83
3016 8830 4.118480 AGAGCACGACGCAAACAA 57.882 50.000 0.00 0.00 46.13 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.