Multiple sequence alignment - TraesCS5B01G508400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G508400 chr5B 100.000 2345 0 0 1 2345 673518557 673516213 0.000000e+00 4331.0
1 TraesCS5B01G508400 chr5B 89.332 778 58 14 999 1763 223116363 223117128 0.000000e+00 953.0
2 TraesCS5B01G508400 chr5B 94.241 573 32 1 1 573 223115785 223116356 0.000000e+00 874.0
3 TraesCS5B01G508400 chr5B 76.415 318 62 11 1004 1315 45227430 45227120 2.410000e-35 159.0
4 TraesCS5B01G508400 chr5B 76.250 320 59 14 1004 1315 45264278 45263968 1.120000e-33 154.0
5 TraesCS5B01G508400 chr5B 89.362 94 10 0 2235 2328 672887512 672887605 4.090000e-23 119.0
6 TraesCS5B01G508400 chr5B 88.235 68 8 0 1782 1849 673507140 673507073 5.370000e-12 82.4
7 TraesCS5B01G508400 chr2D 92.327 782 47 11 988 1764 514968177 514967404 0.000000e+00 1099.0
8 TraesCS5B01G508400 chr2D 93.657 536 33 1 37 572 514968703 514968169 0.000000e+00 800.0
9 TraesCS5B01G508400 chr2D 84.286 210 20 10 1560 1765 468951356 468951156 2.380000e-45 193.0
10 TraesCS5B01G508400 chr2D 83.981 206 19 8 1561 1761 617220093 617220289 3.980000e-43 185.0
11 TraesCS5B01G508400 chr2A 91.152 486 30 10 1283 1764 1514887 1514411 0.000000e+00 647.0
12 TraesCS5B01G508400 chr2A 90.071 423 32 8 575 990 757932003 757931584 7.370000e-150 540.0
13 TraesCS5B01G508400 chr2B 87.707 423 44 5 573 988 63092516 63092095 9.740000e-134 486.0
14 TraesCS5B01G508400 chr2B 77.640 322 63 9 997 1315 576739757 576740072 1.110000e-43 187.0
15 TraesCS5B01G508400 chr2B 77.460 315 64 7 1004 1315 638895743 638895433 5.150000e-42 182.0
16 TraesCS5B01G508400 chr7B 87.239 431 37 8 573 986 603345824 603345395 2.110000e-130 475.0
17 TraesCS5B01G508400 chr7B 86.925 413 44 9 573 981 537005424 537005830 2.750000e-124 455.0
18 TraesCS5B01G508400 chr7B 76.543 324 63 12 997 1315 15615252 15615567 5.180000e-37 165.0
19 TraesCS5B01G508400 chr1D 86.792 424 38 14 576 987 356282237 356281820 7.640000e-125 457.0
20 TraesCS5B01G508400 chr1D 85.096 208 18 10 1560 1763 77841633 77841435 1.420000e-47 200.0
21 TraesCS5B01G508400 chr3B 86.118 425 41 15 573 987 55108151 55108567 2.140000e-120 442.0
22 TraesCS5B01G508400 chr6D 86.199 413 46 6 578 981 3319213 3319623 9.950000e-119 436.0
23 TraesCS5B01G508400 chr6A 86.019 422 40 9 573 987 549434013 549433604 3.580000e-118 435.0
24 TraesCS5B01G508400 chr6A 83.721 215 19 10 1553 1763 606069255 606069457 3.080000e-44 189.0
25 TraesCS5B01G508400 chr7A 85.680 419 49 9 572 987 112123312 112122902 4.630000e-117 431.0
26 TraesCS5B01G508400 chr5D 89.632 299 20 7 1948 2238 533544242 533543947 1.020000e-98 370.0
27 TraesCS5B01G508400 chr5D 89.262 149 15 1 1787 1935 533545340 533545193 3.980000e-43 185.0
28 TraesCS5B01G508400 chr5D 76.147 218 32 13 1786 1983 533512706 533512489 1.920000e-16 97.1
29 TraesCS5B01G508400 chr3A 83.721 215 20 9 1553 1763 23226843 23227046 3.080000e-44 189.0
30 TraesCS5B01G508400 chr3A 82.791 215 24 8 1554 1764 10863990 10864195 1.850000e-41 180.0
31 TraesCS5B01G508400 chr4A 77.019 322 65 9 997 1315 522038384 522038699 2.400000e-40 176.0
32 TraesCS5B01G508400 chr6B 76.752 314 68 5 1004 1315 211868707 211868397 1.110000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G508400 chr5B 673516213 673518557 2344 True 4331.0 4331 100.0000 1 2345 1 chr5B.!!$R4 2344
1 TraesCS5B01G508400 chr5B 223115785 223117128 1343 False 913.5 953 91.7865 1 1763 2 chr5B.!!$F2 1762
2 TraesCS5B01G508400 chr2D 514967404 514968703 1299 True 949.5 1099 92.9920 37 1764 2 chr2D.!!$R2 1727
3 TraesCS5B01G508400 chr5D 533543947 533545340 1393 True 277.5 370 89.4470 1787 2238 2 chr5D.!!$R2 451

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
581 582 0.0982 GGACGGTAGGCGAAAATTGC 59.902 55.0 0.0 0.0 0.0 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1772 1788 0.03601 CTGTCCATGTGTGAGGGGTC 60.036 60.0 0.0 0.0 0.0 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 4.265073 GGATGTTGCTAGACTTTGGATGT 58.735 43.478 0.00 0.00 0.00 3.06
291 292 3.169099 CTCCCTGATGAGGTATACTGGG 58.831 54.545 2.25 0.00 41.00 4.45
292 293 2.158158 TCCCTGATGAGGTATACTGGGG 60.158 54.545 2.25 4.81 40.37 4.96
301 302 5.784023 TGAGGTATACTGGGGACTTGATAA 58.216 41.667 2.25 0.00 0.00 1.75
386 387 3.197549 GCTTTAAATGGATTTGGGAGGCA 59.802 43.478 0.00 0.00 0.00 4.75
573 574 0.529992 GATTTGGAGGACGGTAGGCG 60.530 60.000 0.00 0.00 0.00 5.52
574 575 0.974010 ATTTGGAGGACGGTAGGCGA 60.974 55.000 0.00 0.00 0.00 5.54
575 576 1.186917 TTTGGAGGACGGTAGGCGAA 61.187 55.000 0.00 0.00 0.00 4.70
576 577 1.186917 TTGGAGGACGGTAGGCGAAA 61.187 55.000 0.00 0.00 0.00 3.46
577 578 1.186917 TGGAGGACGGTAGGCGAAAA 61.187 55.000 0.00 0.00 0.00 2.29
578 579 0.177373 GGAGGACGGTAGGCGAAAAT 59.823 55.000 0.00 0.00 0.00 1.82
579 580 1.406477 GGAGGACGGTAGGCGAAAATT 60.406 52.381 0.00 0.00 0.00 1.82
580 581 1.664151 GAGGACGGTAGGCGAAAATTG 59.336 52.381 0.00 0.00 0.00 2.32
581 582 0.098200 GGACGGTAGGCGAAAATTGC 59.902 55.000 0.00 0.00 0.00 3.56
590 591 1.070821 GCGAAAATTGCCTTTGGAGC 58.929 50.000 0.00 0.00 0.00 4.70
591 592 1.337167 GCGAAAATTGCCTTTGGAGCT 60.337 47.619 0.00 0.00 0.00 4.09
592 593 2.599659 CGAAAATTGCCTTTGGAGCTC 58.400 47.619 4.71 4.71 0.00 4.09
593 594 2.599659 GAAAATTGCCTTTGGAGCTCG 58.400 47.619 7.83 0.00 0.00 5.03
594 595 1.620822 AAATTGCCTTTGGAGCTCGT 58.379 45.000 7.83 0.00 0.00 4.18
595 596 1.168714 AATTGCCTTTGGAGCTCGTC 58.831 50.000 7.83 0.00 0.00 4.20
604 605 3.941081 GAGCTCGTCCTCCATGGA 58.059 61.111 15.27 15.27 43.86 3.41
615 616 1.799933 CTCCATGGAGGCCTCTAAGT 58.200 55.000 31.14 9.74 38.51 2.24
616 617 2.122768 CTCCATGGAGGCCTCTAAGTT 58.877 52.381 31.14 8.93 38.51 2.66
617 618 3.309296 CTCCATGGAGGCCTCTAAGTTA 58.691 50.000 31.14 12.30 38.51 2.24
618 619 3.711704 CTCCATGGAGGCCTCTAAGTTAA 59.288 47.826 31.14 9.93 38.51 2.01
619 620 4.108570 TCCATGGAGGCCTCTAAGTTAAA 58.891 43.478 31.36 7.69 37.29 1.52
620 621 4.726825 TCCATGGAGGCCTCTAAGTTAAAT 59.273 41.667 31.36 6.51 37.29 1.40
621 622 5.193728 TCCATGGAGGCCTCTAAGTTAAATT 59.806 40.000 31.36 5.71 37.29 1.82
622 623 5.893824 CCATGGAGGCCTCTAAGTTAAATTT 59.106 40.000 31.36 4.92 0.00 1.82
623 624 6.039829 CCATGGAGGCCTCTAAGTTAAATTTC 59.960 42.308 31.36 10.99 0.00 2.17
624 625 6.134535 TGGAGGCCTCTAAGTTAAATTTCA 57.865 37.500 31.36 13.51 0.00 2.69
625 626 6.548321 TGGAGGCCTCTAAGTTAAATTTCAA 58.452 36.000 31.36 0.00 0.00 2.69
626 627 7.007723 TGGAGGCCTCTAAGTTAAATTTCAAA 58.992 34.615 31.36 0.00 0.00 2.69
627 628 7.673926 TGGAGGCCTCTAAGTTAAATTTCAAAT 59.326 33.333 31.36 0.00 0.00 2.32
628 629 8.531982 GGAGGCCTCTAAGTTAAATTTCAAATT 58.468 33.333 31.36 0.00 0.00 1.82
629 630 9.929180 GAGGCCTCTAAGTTAAATTTCAAATTT 57.071 29.630 26.25 12.69 0.00 1.82
630 631 9.929180 AGGCCTCTAAGTTAAATTTCAAATTTC 57.071 29.630 11.47 0.00 0.00 2.17
631 632 9.705290 GGCCTCTAAGTTAAATTTCAAATTTCA 57.295 29.630 11.47 0.00 0.00 2.69
701 702 8.962884 ACAGATATACATGAAAGCATAACACA 57.037 30.769 0.00 0.00 32.27 3.72
702 703 8.830580 ACAGATATACATGAAAGCATAACACAC 58.169 33.333 0.00 0.00 32.27 3.82
703 704 8.829612 CAGATATACATGAAAGCATAACACACA 58.170 33.333 0.00 0.00 32.27 3.72
704 705 9.565090 AGATATACATGAAAGCATAACACACAT 57.435 29.630 0.00 0.00 32.27 3.21
705 706 9.603298 GATATACATGAAAGCATAACACACATG 57.397 33.333 0.00 0.00 39.27 3.21
706 707 5.710513 ACATGAAAGCATAACACACATGT 57.289 34.783 0.00 0.00 40.84 3.21
707 708 6.816134 ACATGAAAGCATAACACACATGTA 57.184 33.333 0.00 0.00 42.78 2.29
708 709 7.395190 ACATGAAAGCATAACACACATGTAT 57.605 32.000 0.00 0.00 42.78 2.29
709 710 7.252708 ACATGAAAGCATAACACACATGTATG 58.747 34.615 1.67 1.67 42.78 2.39
710 711 6.816134 TGAAAGCATAACACACATGTATGT 57.184 33.333 3.31 3.31 38.45 2.29
711 712 7.913674 TGAAAGCATAACACACATGTATGTA 57.086 32.000 10.76 0.00 38.45 2.29
712 713 8.329203 TGAAAGCATAACACACATGTATGTAA 57.671 30.769 10.76 0.00 38.45 2.41
713 714 8.787852 TGAAAGCATAACACACATGTATGTAAA 58.212 29.630 10.76 2.32 38.45 2.01
714 715 9.787532 GAAAGCATAACACACATGTATGTAAAT 57.212 29.630 10.76 4.75 38.45 1.40
722 723 7.601856 ACACACATGTATGTAAATTTTCAGGG 58.398 34.615 8.29 0.00 39.39 4.45
723 724 6.531240 CACACATGTATGTAAATTTTCAGGGC 59.469 38.462 0.00 0.00 39.39 5.19
724 725 6.210385 ACACATGTATGTAAATTTTCAGGGCA 59.790 34.615 0.00 0.00 39.39 5.36
725 726 7.095910 CACATGTATGTAAATTTTCAGGGCAA 58.904 34.615 0.00 0.00 39.39 4.52
726 727 7.601886 CACATGTATGTAAATTTTCAGGGCAAA 59.398 33.333 0.00 0.00 39.39 3.68
727 728 8.153550 ACATGTATGTAAATTTTCAGGGCAAAA 58.846 29.630 0.00 0.00 39.68 2.44
728 729 9.165035 CATGTATGTAAATTTTCAGGGCAAAAT 57.835 29.630 0.00 0.00 37.53 1.82
730 731 9.646427 TGTATGTAAATTTTCAGGGCAAAATAC 57.354 29.630 0.00 0.00 35.35 1.89
731 732 9.646427 GTATGTAAATTTTCAGGGCAAAATACA 57.354 29.630 0.00 0.00 35.35 2.29
733 734 9.737844 ATGTAAATTTTCAGGGCAAAATACATT 57.262 25.926 0.00 0.00 34.31 2.71
734 735 8.997323 TGTAAATTTTCAGGGCAAAATACATTG 58.003 29.630 0.00 0.00 35.35 2.82
735 736 9.213799 GTAAATTTTCAGGGCAAAATACATTGA 57.786 29.630 0.00 0.00 35.35 2.57
736 737 8.688747 AAATTTTCAGGGCAAAATACATTGAA 57.311 26.923 0.00 0.00 35.35 2.69
737 738 8.688747 AATTTTCAGGGCAAAATACATTGAAA 57.311 26.923 0.00 0.00 35.35 2.69
738 739 7.727331 TTTTCAGGGCAAAATACATTGAAAG 57.273 32.000 0.00 0.00 35.35 2.62
739 740 5.404466 TCAGGGCAAAATACATTGAAAGG 57.596 39.130 0.00 0.00 31.84 3.11
740 741 5.083122 TCAGGGCAAAATACATTGAAAGGA 58.917 37.500 0.00 0.00 31.84 3.36
741 742 5.185635 TCAGGGCAAAATACATTGAAAGGAG 59.814 40.000 0.00 0.00 31.84 3.69
742 743 4.467438 AGGGCAAAATACATTGAAAGGAGG 59.533 41.667 0.00 0.00 31.84 4.30
743 744 4.383010 GGGCAAAATACATTGAAAGGAGGG 60.383 45.833 0.00 0.00 31.84 4.30
744 745 4.183865 GCAAAATACATTGAAAGGAGGGC 58.816 43.478 0.00 0.00 31.84 5.19
745 746 4.081476 GCAAAATACATTGAAAGGAGGGCT 60.081 41.667 0.00 0.00 31.84 5.19
746 747 5.413499 CAAAATACATTGAAAGGAGGGCTG 58.587 41.667 0.00 0.00 31.84 4.85
747 748 4.322057 AATACATTGAAAGGAGGGCTGT 57.678 40.909 0.00 0.00 0.00 4.40
748 749 1.915141 ACATTGAAAGGAGGGCTGTG 58.085 50.000 0.00 0.00 0.00 3.66
749 750 0.529378 CATTGAAAGGAGGGCTGTGC 59.471 55.000 0.00 0.00 0.00 4.57
750 751 0.112995 ATTGAAAGGAGGGCTGTGCA 59.887 50.000 0.00 0.00 0.00 4.57
751 752 0.106268 TTGAAAGGAGGGCTGTGCAA 60.106 50.000 0.00 0.00 0.00 4.08
752 753 0.106268 TGAAAGGAGGGCTGTGCAAA 60.106 50.000 0.00 0.00 0.00 3.68
753 754 1.039856 GAAAGGAGGGCTGTGCAAAA 58.960 50.000 0.00 0.00 0.00 2.44
754 755 1.412343 GAAAGGAGGGCTGTGCAAAAA 59.588 47.619 0.00 0.00 0.00 1.94
778 779 8.990163 AAAGACAATTCTAGGACCTTTTAACA 57.010 30.769 0.00 0.00 0.00 2.41
779 780 7.981102 AGACAATTCTAGGACCTTTTAACAC 57.019 36.000 0.00 0.00 0.00 3.32
780 781 7.514721 AGACAATTCTAGGACCTTTTAACACA 58.485 34.615 0.00 0.00 0.00 3.72
781 782 8.164070 AGACAATTCTAGGACCTTTTAACACAT 58.836 33.333 0.00 0.00 0.00 3.21
782 783 8.110860 ACAATTCTAGGACCTTTTAACACATG 57.889 34.615 0.00 0.00 0.00 3.21
783 784 7.942341 ACAATTCTAGGACCTTTTAACACATGA 59.058 33.333 0.00 0.00 0.00 3.07
784 785 8.960591 CAATTCTAGGACCTTTTAACACATGAT 58.039 33.333 0.00 0.00 0.00 2.45
786 787 9.614792 ATTCTAGGACCTTTTAACACATGATAC 57.385 33.333 0.00 0.00 0.00 2.24
787 788 8.375493 TCTAGGACCTTTTAACACATGATACT 57.625 34.615 0.00 0.00 0.00 2.12
788 789 9.483489 TCTAGGACCTTTTAACACATGATACTA 57.517 33.333 0.00 0.00 0.00 1.82
791 792 9.614792 AGGACCTTTTAACACATGATACTATTC 57.385 33.333 0.00 0.00 0.00 1.75
792 793 9.391006 GGACCTTTTAACACATGATACTATTCA 57.609 33.333 0.00 0.00 0.00 2.57
801 802 9.708092 AACACATGATACTATTCATCATCTCAG 57.292 33.333 0.00 0.00 40.37 3.35
802 803 8.312564 ACACATGATACTATTCATCATCTCAGG 58.687 37.037 0.00 0.00 40.37 3.86
803 804 7.278203 CACATGATACTATTCATCATCTCAGGC 59.722 40.741 0.00 0.00 40.37 4.85
804 805 6.291648 TGATACTATTCATCATCTCAGGCC 57.708 41.667 0.00 0.00 0.00 5.19
805 806 5.781818 TGATACTATTCATCATCTCAGGCCA 59.218 40.000 5.01 0.00 0.00 5.36
806 807 6.442885 TGATACTATTCATCATCTCAGGCCAT 59.557 38.462 5.01 0.00 0.00 4.40
807 808 7.620888 TGATACTATTCATCATCTCAGGCCATA 59.379 37.037 5.01 0.00 0.00 2.74
808 809 6.692849 ACTATTCATCATCTCAGGCCATAA 57.307 37.500 5.01 0.00 0.00 1.90
809 810 7.083062 ACTATTCATCATCTCAGGCCATAAA 57.917 36.000 5.01 0.00 0.00 1.40
810 811 7.696981 ACTATTCATCATCTCAGGCCATAAAT 58.303 34.615 5.01 0.00 0.00 1.40
811 812 8.168725 ACTATTCATCATCTCAGGCCATAAATT 58.831 33.333 5.01 0.00 0.00 1.82
812 813 7.850935 ATTCATCATCTCAGGCCATAAATTT 57.149 32.000 5.01 0.00 0.00 1.82
813 814 6.644248 TCATCATCTCAGGCCATAAATTTG 57.356 37.500 5.01 0.00 0.00 2.32
814 815 6.131264 TCATCATCTCAGGCCATAAATTTGT 58.869 36.000 5.01 0.00 0.00 2.83
815 816 6.263842 TCATCATCTCAGGCCATAAATTTGTC 59.736 38.462 5.01 0.00 0.00 3.18
816 817 5.759059 TCATCTCAGGCCATAAATTTGTCT 58.241 37.500 5.01 0.00 0.00 3.41
817 818 6.189859 TCATCTCAGGCCATAAATTTGTCTT 58.810 36.000 5.01 0.00 0.00 3.01
818 819 6.664816 TCATCTCAGGCCATAAATTTGTCTTT 59.335 34.615 5.01 0.00 0.00 2.52
819 820 6.916360 TCTCAGGCCATAAATTTGTCTTTT 57.084 33.333 5.01 0.00 0.00 2.27
820 821 7.301868 TCTCAGGCCATAAATTTGTCTTTTT 57.698 32.000 5.01 0.00 0.00 1.94
841 842 4.804608 TTGTACAGGTCACATTTCAACG 57.195 40.909 0.00 0.00 0.00 4.10
842 843 3.799366 TGTACAGGTCACATTTCAACGT 58.201 40.909 0.00 0.00 0.00 3.99
843 844 4.946445 TGTACAGGTCACATTTCAACGTA 58.054 39.130 0.00 0.00 0.00 3.57
844 845 5.543714 TGTACAGGTCACATTTCAACGTAT 58.456 37.500 0.00 0.00 0.00 3.06
845 846 5.992829 TGTACAGGTCACATTTCAACGTATT 59.007 36.000 0.00 0.00 0.00 1.89
846 847 6.483974 TGTACAGGTCACATTTCAACGTATTT 59.516 34.615 0.00 0.00 0.00 1.40
847 848 6.385649 ACAGGTCACATTTCAACGTATTTT 57.614 33.333 0.00 0.00 0.00 1.82
848 849 7.499321 ACAGGTCACATTTCAACGTATTTTA 57.501 32.000 0.00 0.00 0.00 1.52
849 850 8.106247 ACAGGTCACATTTCAACGTATTTTAT 57.894 30.769 0.00 0.00 0.00 1.40
850 851 8.573035 ACAGGTCACATTTCAACGTATTTTATT 58.427 29.630 0.00 0.00 0.00 1.40
851 852 9.061610 CAGGTCACATTTCAACGTATTTTATTC 57.938 33.333 0.00 0.00 0.00 1.75
852 853 9.010029 AGGTCACATTTCAACGTATTTTATTCT 57.990 29.630 0.00 0.00 0.00 2.40
853 854 9.274065 GGTCACATTTCAACGTATTTTATTCTC 57.726 33.333 0.00 0.00 0.00 2.87
854 855 9.820229 GTCACATTTCAACGTATTTTATTCTCA 57.180 29.630 0.00 0.00 0.00 3.27
882 883 8.856153 TTTTACACACATACACATAACATCCT 57.144 30.769 0.00 0.00 0.00 3.24
883 884 8.856153 TTTACACACATACACATAACATCCTT 57.144 30.769 0.00 0.00 0.00 3.36
884 885 6.741992 ACACACATACACATAACATCCTTG 57.258 37.500 0.00 0.00 0.00 3.61
885 886 6.237901 ACACACATACACATAACATCCTTGT 58.762 36.000 0.00 0.00 37.82 3.16
887 888 7.230510 ACACACATACACATAACATCCTTGTTT 59.769 33.333 0.00 0.00 43.57 2.83
888 889 8.726068 CACACATACACATAACATCCTTGTTTA 58.274 33.333 0.00 0.00 43.57 2.01
889 890 8.726988 ACACATACACATAACATCCTTGTTTAC 58.273 33.333 0.00 0.00 43.57 2.01
890 891 8.946085 CACATACACATAACATCCTTGTTTACT 58.054 33.333 0.00 0.00 43.57 2.24
891 892 9.515226 ACATACACATAACATCCTTGTTTACTT 57.485 29.630 0.00 0.00 43.57 2.24
892 893 9.773328 CATACACATAACATCCTTGTTTACTTG 57.227 33.333 0.00 0.00 43.57 3.16
893 894 6.677913 ACACATAACATCCTTGTTTACTTGC 58.322 36.000 0.00 0.00 43.57 4.01
894 895 6.264292 ACACATAACATCCTTGTTTACTTGCA 59.736 34.615 0.00 0.00 43.57 4.08
895 896 6.582295 CACATAACATCCTTGTTTACTTGCAC 59.418 38.462 0.00 0.00 43.57 4.57
896 897 6.264292 ACATAACATCCTTGTTTACTTGCACA 59.736 34.615 0.00 0.00 43.57 4.57
897 898 5.590530 AACATCCTTGTTTACTTGCACAA 57.409 34.783 0.00 0.00 43.57 3.33
898 899 5.590530 ACATCCTTGTTTACTTGCACAAA 57.409 34.783 0.00 0.00 32.53 2.83
899 900 6.160576 ACATCCTTGTTTACTTGCACAAAT 57.839 33.333 0.00 0.00 32.53 2.32
900 901 6.581712 ACATCCTTGTTTACTTGCACAAATT 58.418 32.000 0.00 0.00 32.53 1.82
901 902 7.047271 ACATCCTTGTTTACTTGCACAAATTT 58.953 30.769 0.00 0.00 32.53 1.82
902 903 7.552330 ACATCCTTGTTTACTTGCACAAATTTT 59.448 29.630 0.00 0.00 32.53 1.82
903 904 7.913674 TCCTTGTTTACTTGCACAAATTTTT 57.086 28.000 0.00 0.00 32.53 1.94
970 971 3.554342 CTCCATGGAGGCCGGGAG 61.554 72.222 31.14 6.42 39.89 4.30
981 982 4.016706 CCGGGAGCCAAACGTCCT 62.017 66.667 0.00 0.00 32.90 3.85
982 983 2.032071 CGGGAGCCAAACGTCCTT 59.968 61.111 0.00 0.00 32.90 3.36
983 984 1.599797 CGGGAGCCAAACGTCCTTT 60.600 57.895 0.00 0.00 32.90 3.11
984 985 1.574702 CGGGAGCCAAACGTCCTTTC 61.575 60.000 0.00 0.00 32.90 2.62
985 986 0.250770 GGGAGCCAAACGTCCTTTCT 60.251 55.000 0.00 0.00 32.90 2.52
986 987 1.157585 GGAGCCAAACGTCCTTTCTC 58.842 55.000 0.00 0.00 0.00 2.87
987 988 0.790814 GAGCCAAACGTCCTTTCTCG 59.209 55.000 0.00 0.00 0.00 4.04
988 989 0.391597 AGCCAAACGTCCTTTCTCGA 59.608 50.000 0.00 0.00 0.00 4.04
989 990 0.511653 GCCAAACGTCCTTTCTCGAC 59.488 55.000 0.00 0.00 0.00 4.20
996 997 2.541055 GTCCTTTCTCGACGGTAGAC 57.459 55.000 0.00 0.00 0.00 2.59
1038 1039 2.639065 TGTCCGAATTCCTTATGGCAC 58.361 47.619 0.00 0.00 0.00 5.01
1044 1045 4.989168 CCGAATTCCTTATGGCACTACTAC 59.011 45.833 0.00 0.00 0.00 2.73
1075 1076 2.045561 TGCGTTTCTTCCAGGTTTCA 57.954 45.000 0.00 0.00 0.00 2.69
1083 1084 7.520937 GCGTTTCTTCCAGGTTTCAATAAACTA 60.521 37.037 0.00 0.00 43.76 2.24
1131 1132 2.690778 GGCAATTTGGCTCGCTCGT 61.691 57.895 15.16 0.00 40.14 4.18
1135 1136 2.851008 GCAATTTGGCTCGCTCGTAATC 60.851 50.000 0.00 0.00 0.00 1.75
1191 1192 6.491394 TCCTTTTGAAGTTGTGTTTACATCG 58.509 36.000 0.00 0.00 36.53 3.84
1197 1198 2.939756 AGTTGTGTTTACATCGTGTGCA 59.060 40.909 1.58 0.00 36.53 4.57
1229 1230 0.771127 TGGGCAGGTTTACAGAAGCT 59.229 50.000 0.00 0.00 0.00 3.74
1312 1313 3.037686 TTGCTGTGTGGTCCACCGT 62.038 57.895 19.57 0.00 43.85 4.83
1353 1355 5.525378 ACGCAAGGATAGCTGATAGAAAAAG 59.475 40.000 0.00 0.00 46.39 2.27
1354 1356 5.559799 CGCAAGGATAGCTGATAGAAAAAGC 60.560 44.000 0.00 0.00 37.20 3.51
1355 1357 5.297776 GCAAGGATAGCTGATAGAAAAAGCA 59.702 40.000 0.00 0.00 39.47 3.91
1444 1448 5.939764 AAAAGGAGAAAAACTTCAGCCTT 57.060 34.783 0.00 0.00 38.65 4.35
1486 1499 6.814146 GTGGTATTGGTGTTTTCTGTTGAAAA 59.186 34.615 0.49 0.49 46.27 2.29
1565 1578 3.838244 AGTTTCCTGTGCTTGTAGTGA 57.162 42.857 0.00 0.00 0.00 3.41
1617 1631 1.546476 GGTCTGTCGTTCCTGATGACT 59.454 52.381 0.00 0.00 43.39 3.41
1628 1642 0.805322 CTGATGACTGGCGCAGACTC 60.805 60.000 10.83 0.00 34.59 3.36
1693 1708 3.643159 AGCAATTCTGGTTTCGGTTTC 57.357 42.857 0.00 0.00 0.00 2.78
1696 1711 3.857010 GCAATTCTGGTTTCGGTTTCAGG 60.857 47.826 0.00 0.00 0.00 3.86
1703 1718 2.557317 GTTTCGGTTTCAGGTGAGACA 58.443 47.619 3.34 0.00 31.48 3.41
1723 1738 9.996554 TGAGACAATGTATTTCCGTTATGATAT 57.003 29.630 0.00 0.00 0.00 1.63
1777 1793 2.666085 AAAAAGGAATGCGGACCCC 58.334 52.632 0.00 0.00 0.00 4.95
1778 1794 0.114364 AAAAAGGAATGCGGACCCCT 59.886 50.000 0.00 0.00 0.00 4.79
1779 1795 0.323451 AAAAGGAATGCGGACCCCTC 60.323 55.000 0.00 0.00 0.00 4.30
1780 1796 1.497309 AAAGGAATGCGGACCCCTCA 61.497 55.000 0.00 0.00 0.00 3.86
1781 1797 2.124695 GGAATGCGGACCCCTCAC 60.125 66.667 0.00 0.00 0.00 3.51
1782 1798 2.668632 GAATGCGGACCCCTCACA 59.331 61.111 0.00 0.00 0.00 3.58
1783 1799 1.745489 GAATGCGGACCCCTCACAC 60.745 63.158 0.00 0.00 0.00 3.82
1784 1800 2.463589 GAATGCGGACCCCTCACACA 62.464 60.000 0.00 0.00 0.00 3.72
1785 1801 1.852157 AATGCGGACCCCTCACACAT 61.852 55.000 0.00 0.00 0.00 3.21
1786 1802 2.436646 GCGGACCCCTCACACATG 60.437 66.667 0.00 0.00 0.00 3.21
1787 1803 2.268920 CGGACCCCTCACACATGG 59.731 66.667 0.00 0.00 0.00 3.66
1788 1804 2.290287 CGGACCCCTCACACATGGA 61.290 63.158 0.00 0.00 0.00 3.41
1789 1805 1.299976 GGACCCCTCACACATGGAC 59.700 63.158 0.00 0.00 0.00 4.02
1790 1806 1.488705 GGACCCCTCACACATGGACA 61.489 60.000 0.00 0.00 0.00 4.02
1791 1807 0.036010 GACCCCTCACACATGGACAG 60.036 60.000 0.00 0.00 0.00 3.51
1792 1808 1.377725 CCCCTCACACATGGACAGC 60.378 63.158 0.00 0.00 0.00 4.40
1793 1809 1.377725 CCCTCACACATGGACAGCC 60.378 63.158 0.00 0.00 0.00 4.85
1794 1810 1.681666 CCTCACACATGGACAGCCT 59.318 57.895 0.00 0.00 34.31 4.58
1795 1811 0.675837 CCTCACACATGGACAGCCTG 60.676 60.000 0.00 0.00 34.31 4.85
1796 1812 1.302752 TCACACATGGACAGCCTGC 60.303 57.895 0.00 0.00 34.31 4.85
1797 1813 2.359107 ACACATGGACAGCCTGCG 60.359 61.111 0.00 0.00 34.31 5.18
1798 1814 3.807538 CACATGGACAGCCTGCGC 61.808 66.667 0.00 0.00 34.31 6.09
1800 1816 4.790962 CATGGACAGCCTGCGCCT 62.791 66.667 4.18 0.00 34.57 5.52
1801 1817 4.039092 ATGGACAGCCTGCGCCTT 62.039 61.111 4.18 0.00 34.57 4.35
1802 1818 3.984193 ATGGACAGCCTGCGCCTTC 62.984 63.158 4.18 0.00 34.57 3.46
1847 1863 2.741092 GTCCTGCAGGTCGGACAA 59.259 61.111 31.58 8.42 46.98 3.18
1881 1897 4.383861 CACGCTGGGAGCAGAGCA 62.384 66.667 0.00 0.00 42.58 4.26
1889 1905 1.080705 GGAGCAGAGCACGTACGTT 60.081 57.895 20.23 4.97 0.00 3.99
1927 1943 1.942657 TGCTTGTGTGAACAGAGAAGC 59.057 47.619 20.73 20.73 35.75 3.86
1935 1951 3.181466 TGTGAACAGAGAAGCAGTAGCAA 60.181 43.478 0.00 0.00 45.49 3.91
1936 1952 3.185391 GTGAACAGAGAAGCAGTAGCAAC 59.815 47.826 0.00 0.00 45.49 4.17
1937 1953 2.464157 ACAGAGAAGCAGTAGCAACC 57.536 50.000 0.00 0.00 45.49 3.77
1939 1955 3.165875 ACAGAGAAGCAGTAGCAACCTA 58.834 45.455 0.00 0.00 45.49 3.08
1940 1956 3.194542 ACAGAGAAGCAGTAGCAACCTAG 59.805 47.826 0.00 0.00 45.49 3.02
1941 1957 2.167487 AGAGAAGCAGTAGCAACCTAGC 59.833 50.000 0.00 0.00 45.49 3.42
1942 1958 1.902508 AGAAGCAGTAGCAACCTAGCA 59.097 47.619 0.00 0.00 45.49 3.49
1943 1959 2.093764 AGAAGCAGTAGCAACCTAGCAG 60.094 50.000 0.00 0.00 45.49 4.24
1946 2900 1.139853 GCAGTAGCAACCTAGCAGGAT 59.860 52.381 8.91 0.00 38.04 3.24
1956 2910 3.773560 ACCTAGCAGGATGAGGAGATAC 58.226 50.000 8.91 0.00 39.69 2.24
1971 2925 7.155328 TGAGGAGATACTTTTGTTCTTCTGAC 58.845 38.462 0.00 0.00 30.76 3.51
1982 2936 4.617959 TGTTCTTCTGACTTCTTGTACGG 58.382 43.478 0.00 0.00 0.00 4.02
1983 2937 4.340097 TGTTCTTCTGACTTCTTGTACGGA 59.660 41.667 0.00 0.00 0.00 4.69
1985 2939 5.723672 TCTTCTGACTTCTTGTACGGATT 57.276 39.130 0.00 0.00 0.00 3.01
1986 2940 6.097915 TCTTCTGACTTCTTGTACGGATTT 57.902 37.500 0.00 0.00 0.00 2.17
1987 2941 6.157211 TCTTCTGACTTCTTGTACGGATTTC 58.843 40.000 0.00 0.00 0.00 2.17
2003 2964 4.156182 GGATTTCGTTTTCTTACTTGCCG 58.844 43.478 0.00 0.00 0.00 5.69
2031 2992 3.282885 GGTGTTGGGAATGAAGAGATCC 58.717 50.000 0.00 0.00 0.00 3.36
2034 2995 3.054139 TGTTGGGAATGAAGAGATCCAGG 60.054 47.826 0.00 0.00 34.82 4.45
2038 2999 2.038295 GGAATGAAGAGATCCAGGCGAT 59.962 50.000 0.00 0.00 33.30 4.58
2069 3030 3.148279 CGGTCCCGAGGAAGGAGG 61.148 72.222 0.00 0.00 42.83 4.30
2111 3072 1.000385 TCGCCAGCCAGATTTGTTTTG 60.000 47.619 0.00 0.00 0.00 2.44
2153 3114 2.279985 AGCCTCGCATCGCATCTG 60.280 61.111 0.00 0.00 0.00 2.90
2167 3128 2.340337 GCATCTGCACCAAAAATCCAC 58.660 47.619 0.00 0.00 41.59 4.02
2226 3187 3.003173 TTCAGCCCGGACTCCAGG 61.003 66.667 0.73 0.00 0.00 4.45
2238 3199 0.990374 ACTCCAGGCTTCTCTTGCAT 59.010 50.000 0.00 0.00 0.00 3.96
2239 3200 1.065564 ACTCCAGGCTTCTCTTGCATC 60.066 52.381 0.00 0.00 0.00 3.91
2240 3201 0.107993 TCCAGGCTTCTCTTGCATCG 60.108 55.000 0.00 0.00 0.00 3.84
2241 3202 0.107993 CCAGGCTTCTCTTGCATCGA 60.108 55.000 0.00 0.00 0.00 3.59
2242 3203 1.288350 CAGGCTTCTCTTGCATCGAG 58.712 55.000 7.10 7.10 0.00 4.04
2243 3204 0.461693 AGGCTTCTCTTGCATCGAGC 60.462 55.000 8.29 4.58 45.96 5.03
2244 3205 0.461693 GGCTTCTCTTGCATCGAGCT 60.462 55.000 8.29 0.00 45.94 4.09
2245 3206 0.651551 GCTTCTCTTGCATCGAGCTG 59.348 55.000 0.00 5.42 45.94 4.24
2246 3207 0.651551 CTTCTCTTGCATCGAGCTGC 59.348 55.000 4.01 4.01 45.94 5.25
2247 3208 0.248565 TTCTCTTGCATCGAGCTGCT 59.751 50.000 11.96 0.00 45.94 4.24
2248 3209 0.459759 TCTCTTGCATCGAGCTGCTG 60.460 55.000 7.01 0.00 45.94 4.41
2249 3210 2.037913 CTCTTGCATCGAGCTGCTGC 62.038 60.000 7.01 7.62 45.94 5.25
2259 3220 3.769201 GCTGCTGCTCCTGGTTTT 58.231 55.556 8.53 0.00 36.03 2.43
2260 3221 1.583477 GCTGCTGCTCCTGGTTTTC 59.417 57.895 8.53 0.00 36.03 2.29
2261 3222 1.174712 GCTGCTGCTCCTGGTTTTCA 61.175 55.000 8.53 0.00 36.03 2.69
2262 3223 0.595095 CTGCTGCTCCTGGTTTTCAC 59.405 55.000 0.00 0.00 0.00 3.18
2263 3224 1.165907 TGCTGCTCCTGGTTTTCACG 61.166 55.000 0.00 0.00 0.00 4.35
2264 3225 1.856265 GCTGCTCCTGGTTTTCACGG 61.856 60.000 0.00 0.00 0.00 4.94
2265 3226 1.856265 CTGCTCCTGGTTTTCACGGC 61.856 60.000 0.00 0.00 0.00 5.68
2266 3227 1.896660 GCTCCTGGTTTTCACGGCA 60.897 57.895 0.00 0.00 0.00 5.69
2267 3228 1.856265 GCTCCTGGTTTTCACGGCAG 61.856 60.000 0.00 0.00 0.00 4.85
2268 3229 1.856265 CTCCTGGTTTTCACGGCAGC 61.856 60.000 0.00 0.00 0.00 5.25
2269 3230 2.252260 CTGGTTTTCACGGCAGCG 59.748 61.111 0.00 0.00 0.00 5.18
2270 3231 2.515057 TGGTTTTCACGGCAGCGT 60.515 55.556 0.00 0.00 0.00 5.07
2271 3232 2.051345 GGTTTTCACGGCAGCGTG 60.051 61.111 8.95 8.95 40.84 5.34
2272 3233 2.051345 GTTTTCACGGCAGCGTGG 60.051 61.111 14.25 0.00 40.01 4.94
2273 3234 3.959975 TTTTCACGGCAGCGTGGC 61.960 61.111 14.25 0.00 40.01 5.01
2285 3246 4.368808 CGTGGCGCTTGACGTTGG 62.369 66.667 7.64 0.00 46.11 3.77
2286 3247 4.025401 GTGGCGCTTGACGTTGGG 62.025 66.667 7.64 0.00 46.11 4.12
2287 3248 4.243008 TGGCGCTTGACGTTGGGA 62.243 61.111 7.64 0.00 46.11 4.37
2288 3249 2.975799 GGCGCTTGACGTTGGGAA 60.976 61.111 7.64 0.00 46.11 3.97
2289 3250 2.332654 GGCGCTTGACGTTGGGAAT 61.333 57.895 7.64 0.00 46.11 3.01
2290 3251 1.154225 GCGCTTGACGTTGGGAATG 60.154 57.895 0.00 0.00 46.11 2.67
2291 3252 1.501741 CGCTTGACGTTGGGAATGG 59.498 57.895 0.00 0.00 36.87 3.16
2292 3253 0.953471 CGCTTGACGTTGGGAATGGA 60.953 55.000 0.00 0.00 36.87 3.41
2293 3254 1.243902 GCTTGACGTTGGGAATGGAA 58.756 50.000 0.00 0.00 0.00 3.53
2294 3255 1.200020 GCTTGACGTTGGGAATGGAAG 59.800 52.381 0.00 0.00 0.00 3.46
2295 3256 1.812571 CTTGACGTTGGGAATGGAAGG 59.187 52.381 0.00 0.00 0.00 3.46
2296 3257 0.608035 TGACGTTGGGAATGGAAGGC 60.608 55.000 0.00 0.00 0.00 4.35
2297 3258 1.644786 GACGTTGGGAATGGAAGGCG 61.645 60.000 0.00 0.00 0.00 5.52
2298 3259 1.674322 CGTTGGGAATGGAAGGCGT 60.674 57.895 0.00 0.00 0.00 5.68
2299 3260 1.241315 CGTTGGGAATGGAAGGCGTT 61.241 55.000 0.00 0.00 0.00 4.84
2300 3261 0.243636 GTTGGGAATGGAAGGCGTTG 59.756 55.000 0.00 0.00 0.00 4.10
2301 3262 0.178975 TTGGGAATGGAAGGCGTTGT 60.179 50.000 0.00 0.00 0.00 3.32
2302 3263 0.693622 TGGGAATGGAAGGCGTTGTA 59.306 50.000 0.00 0.00 0.00 2.41
2303 3264 1.339631 TGGGAATGGAAGGCGTTGTAG 60.340 52.381 0.00 0.00 0.00 2.74
2304 3265 0.733150 GGAATGGAAGGCGTTGTAGC 59.267 55.000 0.00 0.00 0.00 3.58
2305 3266 1.448985 GAATGGAAGGCGTTGTAGCA 58.551 50.000 0.00 0.00 39.27 3.49
2306 3267 2.017049 GAATGGAAGGCGTTGTAGCAT 58.983 47.619 0.00 0.00 39.27 3.79
2307 3268 1.382522 ATGGAAGGCGTTGTAGCATG 58.617 50.000 0.00 0.00 39.27 4.06
2308 3269 0.036164 TGGAAGGCGTTGTAGCATGT 59.964 50.000 0.00 0.00 39.27 3.21
2309 3270 0.727398 GGAAGGCGTTGTAGCATGTC 59.273 55.000 0.00 0.00 39.27 3.06
2310 3271 0.370273 GAAGGCGTTGTAGCATGTCG 59.630 55.000 0.00 0.00 39.27 4.35
2311 3272 0.320421 AAGGCGTTGTAGCATGTCGT 60.320 50.000 0.00 0.00 39.27 4.34
2312 3273 0.736325 AGGCGTTGTAGCATGTCGTC 60.736 55.000 0.00 0.00 39.27 4.20
2313 3274 1.340465 GCGTTGTAGCATGTCGTCG 59.660 57.895 0.00 0.00 37.05 5.12
2314 3275 1.340465 CGTTGTAGCATGTCGTCGC 59.660 57.895 0.00 0.00 0.00 5.19
2315 3276 1.340465 GTTGTAGCATGTCGTCGCG 59.660 57.895 0.00 0.00 0.00 5.87
2316 3277 1.081041 TTGTAGCATGTCGTCGCGT 60.081 52.632 5.77 0.00 0.00 6.01
2317 3278 0.665068 TTGTAGCATGTCGTCGCGTT 60.665 50.000 5.77 0.00 0.00 4.84
2318 3279 1.068832 TGTAGCATGTCGTCGCGTTC 61.069 55.000 5.77 0.00 0.00 3.95
2319 3280 1.515519 TAGCATGTCGTCGCGTTCC 60.516 57.895 5.77 0.00 0.00 3.62
2320 3281 2.202703 TAGCATGTCGTCGCGTTCCA 62.203 55.000 5.77 0.00 0.00 3.53
2321 3282 2.769617 CATGTCGTCGCGTTCCAC 59.230 61.111 5.77 0.00 0.00 4.02
2322 3283 2.803670 ATGTCGTCGCGTTCCACG 60.804 61.111 11.36 11.36 45.88 4.94
2332 3293 2.895039 CGTTCCACGCTGTAACTGT 58.105 52.632 0.00 0.00 33.65 3.55
2333 3294 2.054687 CGTTCCACGCTGTAACTGTA 57.945 50.000 0.00 0.00 33.65 2.74
2334 3295 2.602878 CGTTCCACGCTGTAACTGTAT 58.397 47.619 0.00 0.00 33.65 2.29
2335 3296 3.761657 CGTTCCACGCTGTAACTGTATA 58.238 45.455 0.00 0.00 33.65 1.47
2336 3297 4.357142 CGTTCCACGCTGTAACTGTATAT 58.643 43.478 0.00 0.00 33.65 0.86
2337 3298 4.206404 CGTTCCACGCTGTAACTGTATATG 59.794 45.833 0.00 0.00 33.65 1.78
2338 3299 3.713288 TCCACGCTGTAACTGTATATGC 58.287 45.455 0.00 0.00 0.00 3.14
2339 3300 3.131400 TCCACGCTGTAACTGTATATGCA 59.869 43.478 0.00 0.00 0.00 3.96
2340 3301 4.058124 CCACGCTGTAACTGTATATGCAT 58.942 43.478 3.79 3.79 0.00 3.96
2341 3302 5.010213 TCCACGCTGTAACTGTATATGCATA 59.990 40.000 9.27 9.27 0.00 3.14
2342 3303 5.346011 CCACGCTGTAACTGTATATGCATAG 59.654 44.000 12.79 2.46 0.00 2.23
2343 3304 5.920840 CACGCTGTAACTGTATATGCATAGT 59.079 40.000 12.79 3.15 0.00 2.12
2344 3305 6.088217 CACGCTGTAACTGTATATGCATAGTC 59.912 42.308 12.79 8.08 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 127 9.209048 AGTACAGTTTGGTTCCACATAGATATA 57.791 33.333 0.00 0.00 0.00 0.86
201 202 3.254629 GCATCAACTCAGGAGGCAA 57.745 52.632 0.83 0.00 41.38 4.52
203 204 0.807496 GTTGCATCAACTCAGGAGGC 59.193 55.000 0.83 0.00 40.73 4.70
256 257 5.126545 TCATCAGGGAGCTCATTTTGAATTG 59.873 40.000 17.19 9.05 0.00 2.32
317 318 6.127366 CCAGCCACCTATACATTGATTTTGTT 60.127 38.462 0.00 0.00 0.00 2.83
466 467 0.537371 CGGGTTCCCCTGCCATTATC 60.537 60.000 1.93 0.00 42.67 1.75
468 469 3.003230 CGGGTTCCCCTGCCATTA 58.997 61.111 1.93 0.00 42.67 1.90
493 494 5.651387 TGTTTCCAACTGATCACAAAACA 57.349 34.783 0.00 2.22 32.78 2.83
533 534 4.422057 TCACCCTAGACACTGGACATAAA 58.578 43.478 0.00 0.00 0.00 1.40
545 546 2.159085 CGTCCTCCAAATCACCCTAGAC 60.159 54.545 0.00 0.00 0.00 2.59
573 574 2.029918 ACGAGCTCCAAAGGCAATTTTC 60.030 45.455 8.47 0.00 0.00 2.29
574 575 1.963515 ACGAGCTCCAAAGGCAATTTT 59.036 42.857 8.47 0.00 0.00 1.82
575 576 1.541588 GACGAGCTCCAAAGGCAATTT 59.458 47.619 8.47 0.00 0.00 1.82
576 577 1.168714 GACGAGCTCCAAAGGCAATT 58.831 50.000 8.47 0.00 0.00 2.32
577 578 0.678048 GGACGAGCTCCAAAGGCAAT 60.678 55.000 8.47 0.00 39.21 3.56
578 579 1.302511 GGACGAGCTCCAAAGGCAA 60.303 57.895 8.47 0.00 39.21 4.52
579 580 2.172483 GAGGACGAGCTCCAAAGGCA 62.172 60.000 8.47 0.00 42.46 4.75
580 581 1.448717 GAGGACGAGCTCCAAAGGC 60.449 63.158 8.47 0.00 42.46 4.35
581 582 1.219393 GGAGGACGAGCTCCAAAGG 59.781 63.158 8.47 0.00 42.46 3.11
582 583 1.975327 TGGAGGACGAGCTCCAAAG 59.025 57.895 8.47 0.00 45.68 2.77
583 584 4.208426 TGGAGGACGAGCTCCAAA 57.792 55.556 8.47 0.00 45.68 3.28
586 587 1.743321 CTCCATGGAGGACGAGCTCC 61.743 65.000 31.14 0.00 43.07 4.70
587 588 1.739049 CTCCATGGAGGACGAGCTC 59.261 63.158 31.14 2.73 43.07 4.09
588 589 3.947173 CTCCATGGAGGACGAGCT 58.053 61.111 31.14 0.00 43.07 4.09
596 597 1.799933 ACTTAGAGGCCTCCATGGAG 58.200 55.000 31.69 31.69 41.63 3.86
597 598 2.270434 AACTTAGAGGCCTCCATGGA 57.730 50.000 29.54 15.27 38.35 3.41
598 599 4.503714 TTTAACTTAGAGGCCTCCATGG 57.496 45.455 29.54 18.29 39.35 3.66
599 600 6.603201 TGAAATTTAACTTAGAGGCCTCCATG 59.397 38.462 29.54 19.93 0.00 3.66
600 601 6.731467 TGAAATTTAACTTAGAGGCCTCCAT 58.269 36.000 29.54 14.62 0.00 3.41
601 602 6.134535 TGAAATTTAACTTAGAGGCCTCCA 57.865 37.500 29.54 14.08 0.00 3.86
602 603 7.462571 TTTGAAATTTAACTTAGAGGCCTCC 57.537 36.000 29.54 11.59 0.00 4.30
603 604 9.929180 AAATTTGAAATTTAACTTAGAGGCCTC 57.071 29.630 26.22 26.22 0.00 4.70
604 605 9.929180 GAAATTTGAAATTTAACTTAGAGGCCT 57.071 29.630 15.15 3.86 0.00 5.19
605 606 9.705290 TGAAATTTGAAATTTAACTTAGAGGCC 57.295 29.630 15.15 0.00 0.00 5.19
676 677 8.830580 GTGTGTTATGCTTTCATGTATATCTGT 58.169 33.333 0.00 0.00 34.22 3.41
677 678 8.829612 TGTGTGTTATGCTTTCATGTATATCTG 58.170 33.333 0.00 0.00 34.22 2.90
678 679 8.962884 TGTGTGTTATGCTTTCATGTATATCT 57.037 30.769 0.00 0.00 34.22 1.98
679 680 9.603298 CATGTGTGTTATGCTTTCATGTATATC 57.397 33.333 0.00 0.00 34.22 1.63
680 681 9.123902 ACATGTGTGTTATGCTTTCATGTATAT 57.876 29.630 0.00 0.00 41.23 0.86
681 682 8.504812 ACATGTGTGTTATGCTTTCATGTATA 57.495 30.769 0.00 0.00 41.23 1.47
682 683 7.395190 ACATGTGTGTTATGCTTTCATGTAT 57.605 32.000 0.00 0.00 41.23 2.29
683 684 6.816134 ACATGTGTGTTATGCTTTCATGTA 57.184 33.333 0.00 0.00 41.23 2.29
684 685 5.710513 ACATGTGTGTTATGCTTTCATGT 57.289 34.783 0.00 0.00 39.25 3.21
685 686 7.252708 ACATACATGTGTGTTATGCTTTCATG 58.747 34.615 21.17 7.98 40.03 3.07
686 687 7.395190 ACATACATGTGTGTTATGCTTTCAT 57.605 32.000 21.17 0.00 40.03 2.57
687 688 6.816134 ACATACATGTGTGTTATGCTTTCA 57.184 33.333 21.17 0.00 40.03 2.69
688 689 9.787532 ATTTACATACATGTGTGTTATGCTTTC 57.212 29.630 29.70 0.00 41.89 2.62
696 697 8.087750 CCCTGAAAATTTACATACATGTGTGTT 58.912 33.333 29.70 13.45 41.89 3.32
697 698 7.601856 CCCTGAAAATTTACATACATGTGTGT 58.398 34.615 28.01 28.01 41.89 3.72
698 699 6.531240 GCCCTGAAAATTTACATACATGTGTG 59.469 38.462 19.81 19.81 41.89 3.82
699 700 6.210385 TGCCCTGAAAATTTACATACATGTGT 59.790 34.615 9.11 0.00 41.89 3.72
700 701 6.629128 TGCCCTGAAAATTTACATACATGTG 58.371 36.000 9.11 0.00 41.89 3.21
701 702 6.849085 TGCCCTGAAAATTTACATACATGT 57.151 33.333 2.69 2.69 44.48 3.21
702 703 8.545229 TTTTGCCCTGAAAATTTACATACATG 57.455 30.769 0.00 0.00 0.00 3.21
704 705 9.646427 GTATTTTGCCCTGAAAATTTACATACA 57.354 29.630 0.00 0.00 36.94 2.29
705 706 9.646427 TGTATTTTGCCCTGAAAATTTACATAC 57.354 29.630 0.00 0.00 36.94 2.39
707 708 9.737844 AATGTATTTTGCCCTGAAAATTTACAT 57.262 25.926 0.00 0.00 36.72 2.29
708 709 8.997323 CAATGTATTTTGCCCTGAAAATTTACA 58.003 29.630 0.00 0.00 36.94 2.41
709 710 9.213799 TCAATGTATTTTGCCCTGAAAATTTAC 57.786 29.630 0.00 0.00 36.94 2.01
710 711 9.784531 TTCAATGTATTTTGCCCTGAAAATTTA 57.215 25.926 0.00 0.00 36.94 1.40
711 712 8.688747 TTCAATGTATTTTGCCCTGAAAATTT 57.311 26.923 0.00 0.00 36.94 1.82
712 713 8.688747 TTTCAATGTATTTTGCCCTGAAAATT 57.311 26.923 0.00 0.00 36.94 1.82
713 714 7.391275 CCTTTCAATGTATTTTGCCCTGAAAAT 59.609 33.333 0.00 0.00 38.69 1.82
714 715 6.709846 CCTTTCAATGTATTTTGCCCTGAAAA 59.290 34.615 0.00 0.00 32.61 2.29
715 716 6.042552 TCCTTTCAATGTATTTTGCCCTGAAA 59.957 34.615 0.00 0.00 32.20 2.69
716 717 5.541868 TCCTTTCAATGTATTTTGCCCTGAA 59.458 36.000 0.00 0.00 0.00 3.02
717 718 5.083122 TCCTTTCAATGTATTTTGCCCTGA 58.917 37.500 0.00 0.00 0.00 3.86
718 719 5.404466 TCCTTTCAATGTATTTTGCCCTG 57.596 39.130 0.00 0.00 0.00 4.45
719 720 4.467438 CCTCCTTTCAATGTATTTTGCCCT 59.533 41.667 0.00 0.00 0.00 5.19
720 721 4.383010 CCCTCCTTTCAATGTATTTTGCCC 60.383 45.833 0.00 0.00 0.00 5.36
721 722 4.758688 CCCTCCTTTCAATGTATTTTGCC 58.241 43.478 0.00 0.00 0.00 4.52
722 723 4.081476 AGCCCTCCTTTCAATGTATTTTGC 60.081 41.667 0.00 0.00 0.00 3.68
723 724 5.047092 ACAGCCCTCCTTTCAATGTATTTTG 60.047 40.000 0.00 0.00 0.00 2.44
724 725 5.047092 CACAGCCCTCCTTTCAATGTATTTT 60.047 40.000 0.00 0.00 0.00 1.82
725 726 4.463891 CACAGCCCTCCTTTCAATGTATTT 59.536 41.667 0.00 0.00 0.00 1.40
726 727 4.019174 CACAGCCCTCCTTTCAATGTATT 58.981 43.478 0.00 0.00 0.00 1.89
727 728 3.624777 CACAGCCCTCCTTTCAATGTAT 58.375 45.455 0.00 0.00 0.00 2.29
728 729 2.879756 GCACAGCCCTCCTTTCAATGTA 60.880 50.000 0.00 0.00 0.00 2.29
729 730 1.915141 CACAGCCCTCCTTTCAATGT 58.085 50.000 0.00 0.00 0.00 2.71
730 731 0.529378 GCACAGCCCTCCTTTCAATG 59.471 55.000 0.00 0.00 0.00 2.82
731 732 0.112995 TGCACAGCCCTCCTTTCAAT 59.887 50.000 0.00 0.00 0.00 2.57
732 733 0.106268 TTGCACAGCCCTCCTTTCAA 60.106 50.000 0.00 0.00 0.00 2.69
733 734 0.106268 TTTGCACAGCCCTCCTTTCA 60.106 50.000 0.00 0.00 0.00 2.69
734 735 1.039856 TTTTGCACAGCCCTCCTTTC 58.960 50.000 0.00 0.00 0.00 2.62
735 736 1.494960 TTTTTGCACAGCCCTCCTTT 58.505 45.000 0.00 0.00 0.00 3.11
736 737 3.222287 TTTTTGCACAGCCCTCCTT 57.778 47.368 0.00 0.00 0.00 3.36
752 753 9.416284 TGTTAAAAGGTCCTAGAATTGTCTTTT 57.584 29.630 0.00 0.00 37.00 2.27
753 754 8.847196 GTGTTAAAAGGTCCTAGAATTGTCTTT 58.153 33.333 0.00 0.00 35.12 2.52
754 755 7.996644 TGTGTTAAAAGGTCCTAGAATTGTCTT 59.003 33.333 0.00 0.00 35.12 3.01
755 756 7.514721 TGTGTTAAAAGGTCCTAGAATTGTCT 58.485 34.615 0.00 0.00 37.95 3.41
756 757 7.739498 TGTGTTAAAAGGTCCTAGAATTGTC 57.261 36.000 0.00 0.00 0.00 3.18
757 758 7.942341 TCATGTGTTAAAAGGTCCTAGAATTGT 59.058 33.333 0.00 0.00 0.00 2.71
758 759 8.335532 TCATGTGTTAAAAGGTCCTAGAATTG 57.664 34.615 0.00 0.00 0.00 2.32
760 761 9.614792 GTATCATGTGTTAAAAGGTCCTAGAAT 57.385 33.333 0.00 0.00 0.00 2.40
761 762 8.822805 AGTATCATGTGTTAAAAGGTCCTAGAA 58.177 33.333 0.00 0.00 0.00 2.10
762 763 8.375493 AGTATCATGTGTTAAAAGGTCCTAGA 57.625 34.615 0.00 0.00 0.00 2.43
765 766 9.614792 GAATAGTATCATGTGTTAAAAGGTCCT 57.385 33.333 0.00 0.00 0.00 3.85
766 767 9.391006 TGAATAGTATCATGTGTTAAAAGGTCC 57.609 33.333 0.00 0.00 0.00 4.46
775 776 9.708092 CTGAGATGATGAATAGTATCATGTGTT 57.292 33.333 5.30 0.00 43.37 3.32
776 777 8.312564 CCTGAGATGATGAATAGTATCATGTGT 58.687 37.037 5.30 0.00 43.37 3.72
777 778 7.278203 GCCTGAGATGATGAATAGTATCATGTG 59.722 40.741 5.30 0.00 43.37 3.21
778 779 7.329499 GCCTGAGATGATGAATAGTATCATGT 58.671 38.462 5.30 1.70 43.37 3.21
779 780 6.762187 GGCCTGAGATGATGAATAGTATCATG 59.238 42.308 0.00 0.00 43.37 3.07
780 781 6.442885 TGGCCTGAGATGATGAATAGTATCAT 59.557 38.462 3.32 0.00 45.35 2.45
781 782 5.781818 TGGCCTGAGATGATGAATAGTATCA 59.218 40.000 3.32 0.00 38.76 2.15
782 783 6.291648 TGGCCTGAGATGATGAATAGTATC 57.708 41.667 3.32 0.00 0.00 2.24
783 784 6.887886 ATGGCCTGAGATGATGAATAGTAT 57.112 37.500 3.32 0.00 0.00 2.12
784 785 7.797121 TTATGGCCTGAGATGATGAATAGTA 57.203 36.000 3.32 0.00 0.00 1.82
785 786 6.692849 TTATGGCCTGAGATGATGAATAGT 57.307 37.500 3.32 0.00 0.00 2.12
786 787 8.577048 AATTTATGGCCTGAGATGATGAATAG 57.423 34.615 3.32 0.00 0.00 1.73
787 788 8.799367 CAAATTTATGGCCTGAGATGATGAATA 58.201 33.333 3.32 0.00 0.00 1.75
788 789 7.289317 ACAAATTTATGGCCTGAGATGATGAAT 59.711 33.333 3.32 0.00 0.00 2.57
789 790 6.608405 ACAAATTTATGGCCTGAGATGATGAA 59.392 34.615 3.32 0.00 0.00 2.57
790 791 6.131264 ACAAATTTATGGCCTGAGATGATGA 58.869 36.000 3.32 0.00 0.00 2.92
791 792 6.264744 AGACAAATTTATGGCCTGAGATGATG 59.735 38.462 3.32 0.00 0.00 3.07
792 793 6.371278 AGACAAATTTATGGCCTGAGATGAT 58.629 36.000 3.32 0.00 0.00 2.45
793 794 5.759059 AGACAAATTTATGGCCTGAGATGA 58.241 37.500 3.32 0.00 0.00 2.92
794 795 6.461110 AAGACAAATTTATGGCCTGAGATG 57.539 37.500 3.32 0.00 0.00 2.90
795 796 7.486407 AAAAGACAAATTTATGGCCTGAGAT 57.514 32.000 3.32 0.00 0.00 2.75
796 797 6.916360 AAAAGACAAATTTATGGCCTGAGA 57.084 33.333 3.32 0.00 0.00 3.27
817 818 6.030849 CGTTGAAATGTGACCTGTACAAAAA 58.969 36.000 0.00 0.00 0.00 1.94
818 819 5.124138 ACGTTGAAATGTGACCTGTACAAAA 59.876 36.000 0.00 0.00 0.00 2.44
819 820 4.636648 ACGTTGAAATGTGACCTGTACAAA 59.363 37.500 0.00 0.00 0.00 2.83
820 821 4.193090 ACGTTGAAATGTGACCTGTACAA 58.807 39.130 0.00 0.00 0.00 2.41
821 822 3.799366 ACGTTGAAATGTGACCTGTACA 58.201 40.909 0.00 0.00 0.00 2.90
822 823 6.476243 AATACGTTGAAATGTGACCTGTAC 57.524 37.500 0.00 0.00 0.00 2.90
823 824 7.499321 AAAATACGTTGAAATGTGACCTGTA 57.501 32.000 0.00 0.00 0.00 2.74
824 825 6.385649 AAAATACGTTGAAATGTGACCTGT 57.614 33.333 0.00 0.00 0.00 4.00
825 826 8.964420 AATAAAATACGTTGAAATGTGACCTG 57.036 30.769 0.00 0.00 0.00 4.00
826 827 9.010029 AGAATAAAATACGTTGAAATGTGACCT 57.990 29.630 0.00 0.00 0.00 3.85
827 828 9.274065 GAGAATAAAATACGTTGAAATGTGACC 57.726 33.333 0.00 0.00 0.00 4.02
828 829 9.820229 TGAGAATAAAATACGTTGAAATGTGAC 57.180 29.630 0.00 0.00 0.00 3.67
856 857 9.461312 AGGATGTTATGTGTATGTGTGTAAAAT 57.539 29.630 0.00 0.00 0.00 1.82
857 858 8.856153 AGGATGTTATGTGTATGTGTGTAAAA 57.144 30.769 0.00 0.00 0.00 1.52
858 859 8.726068 CAAGGATGTTATGTGTATGTGTGTAAA 58.274 33.333 0.00 0.00 0.00 2.01
859 860 7.880713 ACAAGGATGTTATGTGTATGTGTGTAA 59.119 33.333 0.00 0.00 35.91 2.41
860 861 7.390823 ACAAGGATGTTATGTGTATGTGTGTA 58.609 34.615 0.00 0.00 35.91 2.90
861 862 6.237901 ACAAGGATGTTATGTGTATGTGTGT 58.762 36.000 0.00 0.00 35.91 3.72
862 863 6.741992 ACAAGGATGTTATGTGTATGTGTG 57.258 37.500 0.00 0.00 35.91 3.82
876 877 5.590530 TTTGTGCAAGTAAACAAGGATGT 57.409 34.783 0.00 0.00 43.14 3.06
877 878 7.481275 AAATTTGTGCAAGTAAACAAGGATG 57.519 32.000 0.00 0.00 37.57 3.51
878 879 8.504812 AAAAATTTGTGCAAGTAAACAAGGAT 57.495 26.923 0.00 0.00 37.57 3.24
879 880 7.913674 AAAAATTTGTGCAAGTAAACAAGGA 57.086 28.000 0.00 0.00 37.57 3.36
953 954 3.554342 CTCCCGGCCTCCATGGAG 61.554 72.222 31.69 31.69 41.63 3.86
964 965 3.546714 AAGGACGTTTGGCTCCCGG 62.547 63.158 0.00 0.00 0.00 5.73
965 966 1.574702 GAAAGGACGTTTGGCTCCCG 61.575 60.000 0.00 0.00 0.00 5.14
966 967 0.250770 AGAAAGGACGTTTGGCTCCC 60.251 55.000 0.00 0.00 0.00 4.30
967 968 1.157585 GAGAAAGGACGTTTGGCTCC 58.842 55.000 0.00 0.00 0.00 4.70
968 969 0.790814 CGAGAAAGGACGTTTGGCTC 59.209 55.000 0.00 0.00 0.00 4.70
969 970 0.391597 TCGAGAAAGGACGTTTGGCT 59.608 50.000 0.00 0.00 0.00 4.75
970 971 0.511653 GTCGAGAAAGGACGTTTGGC 59.488 55.000 0.00 0.00 0.00 4.52
977 978 2.083002 AGTCTACCGTCGAGAAAGGAC 58.917 52.381 0.00 2.29 0.00 3.85
978 979 2.027377 AGAGTCTACCGTCGAGAAAGGA 60.027 50.000 0.00 0.00 0.00 3.36
979 980 2.358015 AGAGTCTACCGTCGAGAAAGG 58.642 52.381 0.00 0.00 0.00 3.11
980 981 4.553156 GCATAGAGTCTACCGTCGAGAAAG 60.553 50.000 0.85 0.00 0.00 2.62
981 982 3.311871 GCATAGAGTCTACCGTCGAGAAA 59.688 47.826 0.85 0.00 0.00 2.52
982 983 2.871022 GCATAGAGTCTACCGTCGAGAA 59.129 50.000 0.85 0.00 0.00 2.87
983 984 2.102757 AGCATAGAGTCTACCGTCGAGA 59.897 50.000 0.85 0.00 0.00 4.04
984 985 2.485903 AGCATAGAGTCTACCGTCGAG 58.514 52.381 0.85 0.00 0.00 4.04
985 986 2.612672 CAAGCATAGAGTCTACCGTCGA 59.387 50.000 0.85 0.00 0.00 4.20
986 987 2.287069 CCAAGCATAGAGTCTACCGTCG 60.287 54.545 0.85 0.00 0.00 5.12
987 988 2.034812 CCCAAGCATAGAGTCTACCGTC 59.965 54.545 0.85 0.00 0.00 4.79
988 989 2.032620 CCCAAGCATAGAGTCTACCGT 58.967 52.381 0.85 0.00 0.00 4.83
989 990 2.034812 GTCCCAAGCATAGAGTCTACCG 59.965 54.545 0.85 0.00 0.00 4.02
990 991 3.068873 CAGTCCCAAGCATAGAGTCTACC 59.931 52.174 0.85 0.00 0.00 3.18
991 992 3.954904 TCAGTCCCAAGCATAGAGTCTAC 59.045 47.826 0.85 0.00 0.00 2.59
992 993 4.251103 TCAGTCCCAAGCATAGAGTCTA 57.749 45.455 1.45 1.45 0.00 2.59
993 994 3.107402 TCAGTCCCAAGCATAGAGTCT 57.893 47.619 0.00 0.00 0.00 3.24
994 995 3.895232 TTCAGTCCCAAGCATAGAGTC 57.105 47.619 0.00 0.00 0.00 3.36
995 996 3.521126 ACATTCAGTCCCAAGCATAGAGT 59.479 43.478 0.00 0.00 0.00 3.24
996 997 4.148128 ACATTCAGTCCCAAGCATAGAG 57.852 45.455 0.00 0.00 0.00 2.43
1038 1039 7.594015 AGAAACGCATATATCCAAACGTAGTAG 59.406 37.037 0.00 0.00 45.00 2.57
1044 1045 5.007234 TGGAAGAAACGCATATATCCAAACG 59.993 40.000 0.00 0.00 32.84 3.60
1075 1076 7.777910 TGCTAGCCCAACAATGTATAGTTTATT 59.222 33.333 13.29 0.00 0.00 1.40
1083 1084 2.301346 GCTGCTAGCCCAACAATGTAT 58.699 47.619 13.29 0.00 34.48 2.29
1088 1089 1.631405 AATTGCTGCTAGCCCAACAA 58.369 45.000 13.29 11.34 41.51 2.83
1131 1132 1.396648 CGCTCAAATGTGGCACGATTA 59.603 47.619 13.77 0.00 0.00 1.75
1135 1136 2.502510 GCGCTCAAATGTGGCACG 60.503 61.111 13.77 0.00 0.00 5.34
1166 1167 6.970043 CGATGTAAACACAACTTCAAAAGGAA 59.030 34.615 0.00 0.00 0.00 3.36
1191 1192 4.567959 GCCCAATAATTCAGAAATGCACAC 59.432 41.667 0.00 0.00 0.00 3.82
1197 1198 6.625532 AAACCTGCCCAATAATTCAGAAAT 57.374 33.333 0.00 0.00 0.00 2.17
1229 1230 0.625316 CACCACCTCCATCATCCCAA 59.375 55.000 0.00 0.00 0.00 4.12
1312 1313 1.134401 GCGTTCATCCTCATCAAGGGA 60.134 52.381 0.00 0.00 46.23 4.20
1353 1355 2.015736 ACATCATCGTTCCTCACTGC 57.984 50.000 0.00 0.00 0.00 4.40
1354 1356 5.362556 AAAAACATCATCGTTCCTCACTG 57.637 39.130 0.00 0.00 0.00 3.66
1434 1438 2.168313 CCCAAAACACAAAGGCTGAAGT 59.832 45.455 0.00 0.00 0.00 3.01
1444 1448 2.291282 ACCACTCAGTCCCAAAACACAA 60.291 45.455 0.00 0.00 0.00 3.33
1486 1499 1.380785 CCCATGAACCAGCCTGCAT 60.381 57.895 0.00 0.00 0.00 3.96
1489 1502 0.679002 CAGACCCATGAACCAGCCTG 60.679 60.000 0.00 0.00 0.00 4.85
1617 1631 2.731691 GAAACCCAGAGTCTGCGCCA 62.732 60.000 15.10 0.00 0.00 5.69
1628 1642 0.468029 AGCAACACCAGGAAACCCAG 60.468 55.000 0.00 0.00 0.00 4.45
1693 1708 4.253685 ACGGAAATACATTGTCTCACCTG 58.746 43.478 0.00 0.00 0.00 4.00
1696 1711 7.534085 TCATAACGGAAATACATTGTCTCAC 57.466 36.000 0.00 0.00 0.00 3.51
1723 1738 5.309806 GCTTCCCCCTTTCCATTATACTCTA 59.690 44.000 0.00 0.00 0.00 2.43
1724 1739 4.104897 GCTTCCCCCTTTCCATTATACTCT 59.895 45.833 0.00 0.00 0.00 3.24
1725 1740 4.399219 GCTTCCCCCTTTCCATTATACTC 58.601 47.826 0.00 0.00 0.00 2.59
1726 1741 3.140332 GGCTTCCCCCTTTCCATTATACT 59.860 47.826 0.00 0.00 0.00 2.12
1727 1742 3.497332 GGCTTCCCCCTTTCCATTATAC 58.503 50.000 0.00 0.00 0.00 1.47
1764 1780 2.124695 GTGAGGGGTCCGCATTCC 60.125 66.667 8.89 0.00 35.49 3.01
1765 1781 1.745489 GTGTGAGGGGTCCGCATTC 60.745 63.158 8.89 0.00 35.49 2.67
1766 1782 1.852157 ATGTGTGAGGGGTCCGCATT 61.852 55.000 8.89 0.00 35.49 3.56
1767 1783 2.300967 ATGTGTGAGGGGTCCGCAT 61.301 57.895 8.89 0.00 35.49 4.73
1768 1784 2.927856 ATGTGTGAGGGGTCCGCA 60.928 61.111 8.89 0.00 0.00 5.69
1769 1785 2.436646 CATGTGTGAGGGGTCCGC 60.437 66.667 0.00 0.00 0.00 5.54
1770 1786 2.268920 CCATGTGTGAGGGGTCCG 59.731 66.667 0.00 0.00 0.00 4.79
1771 1787 1.299976 GTCCATGTGTGAGGGGTCC 59.700 63.158 0.00 0.00 0.00 4.46
1772 1788 0.036010 CTGTCCATGTGTGAGGGGTC 60.036 60.000 0.00 0.00 0.00 4.46
1773 1789 2.069776 CTGTCCATGTGTGAGGGGT 58.930 57.895 0.00 0.00 0.00 4.95
1774 1790 1.377725 GCTGTCCATGTGTGAGGGG 60.378 63.158 0.00 0.00 0.00 4.79
1775 1791 1.377725 GGCTGTCCATGTGTGAGGG 60.378 63.158 0.00 0.00 0.00 4.30
1776 1792 0.675837 CAGGCTGTCCATGTGTGAGG 60.676 60.000 6.28 0.00 33.74 3.86
1777 1793 1.303799 GCAGGCTGTCCATGTGTGAG 61.304 60.000 17.16 0.00 33.74 3.51
1778 1794 1.302752 GCAGGCTGTCCATGTGTGA 60.303 57.895 17.16 0.00 33.74 3.58
1779 1795 2.683859 CGCAGGCTGTCCATGTGTG 61.684 63.158 17.16 0.00 33.74 3.82
1780 1796 2.359107 CGCAGGCTGTCCATGTGT 60.359 61.111 17.16 0.00 33.74 3.72
1781 1797 3.807538 GCGCAGGCTGTCCATGTG 61.808 66.667 17.16 0.00 35.83 3.21
1807 1823 3.487202 CGTCAATGGCGGACACGG 61.487 66.667 0.00 0.00 41.36 4.94
1808 1824 2.736995 ACGTCAATGGCGGACACG 60.737 61.111 13.10 0.00 44.63 4.49
1809 1825 2.677003 CCACGTCAATGGCGGACAC 61.677 63.158 13.10 0.00 34.97 3.67
1810 1826 2.358125 CCACGTCAATGGCGGACA 60.358 61.111 13.10 0.00 34.97 4.02
1828 1844 2.099652 TTGTCCGACCTGCAGGACAG 62.100 60.000 39.19 25.01 46.77 3.51
1875 1891 2.090658 GTGATCAAACGTACGTGCTCTG 59.909 50.000 23.57 16.26 0.00 3.35
1881 1897 1.057636 CTGCGTGATCAAACGTACGT 58.942 50.000 16.72 16.72 45.32 3.57
1889 1905 2.098934 AGCACAAAAACTGCGTGATCAA 59.901 40.909 0.00 0.00 39.79 2.57
1927 1943 2.432146 TCATCCTGCTAGGTTGCTACTG 59.568 50.000 0.00 0.00 35.53 2.74
1935 1951 3.401002 AGTATCTCCTCATCCTGCTAGGT 59.599 47.826 0.00 0.00 36.53 3.08
1936 1952 4.046286 AGTATCTCCTCATCCTGCTAGG 57.954 50.000 0.00 0.00 36.46 3.02
1937 1953 6.183360 ACAAAAGTATCTCCTCATCCTGCTAG 60.183 42.308 0.00 0.00 0.00 3.42
1939 1955 4.472833 ACAAAAGTATCTCCTCATCCTGCT 59.527 41.667 0.00 0.00 0.00 4.24
1940 1956 4.775236 ACAAAAGTATCTCCTCATCCTGC 58.225 43.478 0.00 0.00 0.00 4.85
1941 1957 6.648192 AGAACAAAAGTATCTCCTCATCCTG 58.352 40.000 0.00 0.00 0.00 3.86
1942 1958 6.882768 AGAACAAAAGTATCTCCTCATCCT 57.117 37.500 0.00 0.00 0.00 3.24
1943 1959 7.279758 CAGAAGAACAAAAGTATCTCCTCATCC 59.720 40.741 0.00 0.00 0.00 3.51
1946 2900 7.015682 AGTCAGAAGAACAAAAGTATCTCCTCA 59.984 37.037 0.00 0.00 0.00 3.86
1956 2910 7.119997 CGTACAAGAAGTCAGAAGAACAAAAG 58.880 38.462 0.00 0.00 0.00 2.27
1982 2936 4.156182 CCGGCAAGTAAGAAAACGAAATC 58.844 43.478 0.00 0.00 0.00 2.17
1983 2937 3.610821 GCCGGCAAGTAAGAAAACGAAAT 60.611 43.478 24.80 0.00 0.00 2.17
1985 2939 1.264826 GCCGGCAAGTAAGAAAACGAA 59.735 47.619 24.80 0.00 0.00 3.85
1986 2940 0.869730 GCCGGCAAGTAAGAAAACGA 59.130 50.000 24.80 0.00 0.00 3.85
1987 2941 0.872388 AGCCGGCAAGTAAGAAAACG 59.128 50.000 31.54 0.00 0.00 3.60
1999 2960 2.031919 CAACACCACTAGCCGGCA 59.968 61.111 31.54 14.00 0.00 5.69
2003 2964 1.004277 TCATTCCCAACACCACTAGCC 59.996 52.381 0.00 0.00 0.00 3.93
2031 2992 1.829533 CCCAATTCCCCATCGCCTG 60.830 63.158 0.00 0.00 0.00 4.85
2034 2995 2.521708 CCCCCAATTCCCCATCGC 60.522 66.667 0.00 0.00 0.00 4.58
2066 3027 0.741221 GTGCACGGATTCCACTCCTC 60.741 60.000 0.00 0.00 32.77 3.71
2069 3030 2.740714 GCGTGCACGGATTCCACTC 61.741 63.158 37.47 15.93 40.23 3.51
2111 3072 6.649557 TCTTTCTCCGTCTTTCTATTGTTTCC 59.350 38.462 0.00 0.00 0.00 3.13
2121 3082 2.612604 GAGGCTCTTTCTCCGTCTTTC 58.387 52.381 7.40 0.00 0.00 2.62
2122 3083 1.067495 CGAGGCTCTTTCTCCGTCTTT 60.067 52.381 13.50 0.00 0.00 2.52
2125 3086 1.517475 GCGAGGCTCTTTCTCCGTC 60.517 63.158 13.50 0.00 0.00 4.79
2126 3087 1.608717 ATGCGAGGCTCTTTCTCCGT 61.609 55.000 13.50 0.00 0.00 4.69
2127 3088 0.873743 GATGCGAGGCTCTTTCTCCG 60.874 60.000 13.50 0.00 0.00 4.63
2128 3089 0.873743 CGATGCGAGGCTCTTTCTCC 60.874 60.000 13.50 0.00 0.00 3.71
2129 3090 1.486644 GCGATGCGAGGCTCTTTCTC 61.487 60.000 13.50 3.36 0.00 2.87
2153 3114 2.562298 TCTGGATGTGGATTTTTGGTGC 59.438 45.455 0.00 0.00 0.00 5.01
2183 3144 1.089920 GCAAGGTACTACTCGGACGA 58.910 55.000 0.00 0.00 38.49 4.20
2188 3149 2.488545 AGTCACTGCAAGGTACTACTCG 59.511 50.000 0.00 0.00 38.49 4.18
2191 3152 4.238514 CTGAAGTCACTGCAAGGTACTAC 58.761 47.826 0.00 0.00 38.49 2.73
2226 3187 0.651551 CAGCTCGATGCAAGAGAAGC 59.348 55.000 21.99 12.63 45.94 3.86
2242 3203 1.174712 TGAAAACCAGGAGCAGCAGC 61.175 55.000 0.00 0.00 42.56 5.25
2243 3204 0.595095 GTGAAAACCAGGAGCAGCAG 59.405 55.000 0.00 0.00 0.00 4.24
2244 3205 1.165907 CGTGAAAACCAGGAGCAGCA 61.166 55.000 0.00 0.00 32.66 4.41
2245 3206 1.576421 CGTGAAAACCAGGAGCAGC 59.424 57.895 0.00 0.00 32.66 5.25
2246 3207 1.856265 GCCGTGAAAACCAGGAGCAG 61.856 60.000 0.00 0.00 32.66 4.24
2247 3208 1.896660 GCCGTGAAAACCAGGAGCA 60.897 57.895 0.00 0.00 32.66 4.26
2248 3209 1.856265 CTGCCGTGAAAACCAGGAGC 61.856 60.000 0.00 0.00 32.66 4.70
2249 3210 1.856265 GCTGCCGTGAAAACCAGGAG 61.856 60.000 0.00 0.00 32.66 3.69
2250 3211 1.896660 GCTGCCGTGAAAACCAGGA 60.897 57.895 0.00 0.00 32.66 3.86
2251 3212 2.644992 GCTGCCGTGAAAACCAGG 59.355 61.111 0.00 0.00 0.00 4.45
2252 3213 2.252260 CGCTGCCGTGAAAACCAG 59.748 61.111 0.00 0.00 0.00 4.00
2268 3229 4.368808 CCAACGTCAAGCGCCACG 62.369 66.667 19.23 19.23 46.11 4.94
2269 3230 4.025401 CCCAACGTCAAGCGCCAC 62.025 66.667 2.29 0.00 46.11 5.01
2270 3231 3.758973 TTCCCAACGTCAAGCGCCA 62.759 57.895 2.29 0.00 46.11 5.69
2271 3232 2.332654 ATTCCCAACGTCAAGCGCC 61.333 57.895 2.29 0.00 46.11 6.53
2272 3233 1.154225 CATTCCCAACGTCAAGCGC 60.154 57.895 0.00 0.00 46.11 5.92
2274 3235 1.200020 CTTCCATTCCCAACGTCAAGC 59.800 52.381 0.00 0.00 0.00 4.01
2275 3236 1.812571 CCTTCCATTCCCAACGTCAAG 59.187 52.381 0.00 0.00 0.00 3.02
2276 3237 1.904287 CCTTCCATTCCCAACGTCAA 58.096 50.000 0.00 0.00 0.00 3.18
2277 3238 0.608035 GCCTTCCATTCCCAACGTCA 60.608 55.000 0.00 0.00 0.00 4.35
2278 3239 1.644786 CGCCTTCCATTCCCAACGTC 61.645 60.000 0.00 0.00 0.00 4.34
2279 3240 1.674322 CGCCTTCCATTCCCAACGT 60.674 57.895 0.00 0.00 0.00 3.99
2280 3241 1.241315 AACGCCTTCCATTCCCAACG 61.241 55.000 0.00 0.00 0.00 4.10
2281 3242 0.243636 CAACGCCTTCCATTCCCAAC 59.756 55.000 0.00 0.00 0.00 3.77
2282 3243 0.178975 ACAACGCCTTCCATTCCCAA 60.179 50.000 0.00 0.00 0.00 4.12
2283 3244 0.693622 TACAACGCCTTCCATTCCCA 59.306 50.000 0.00 0.00 0.00 4.37
2284 3245 1.379527 CTACAACGCCTTCCATTCCC 58.620 55.000 0.00 0.00 0.00 3.97
2285 3246 0.733150 GCTACAACGCCTTCCATTCC 59.267 55.000 0.00 0.00 0.00 3.01
2286 3247 1.448985 TGCTACAACGCCTTCCATTC 58.551 50.000 0.00 0.00 0.00 2.67
2287 3248 1.745087 CATGCTACAACGCCTTCCATT 59.255 47.619 0.00 0.00 0.00 3.16
2288 3249 1.340017 ACATGCTACAACGCCTTCCAT 60.340 47.619 0.00 0.00 0.00 3.41
2289 3250 0.036164 ACATGCTACAACGCCTTCCA 59.964 50.000 0.00 0.00 0.00 3.53
2290 3251 0.727398 GACATGCTACAACGCCTTCC 59.273 55.000 0.00 0.00 0.00 3.46
2291 3252 0.370273 CGACATGCTACAACGCCTTC 59.630 55.000 0.00 0.00 0.00 3.46
2292 3253 0.320421 ACGACATGCTACAACGCCTT 60.320 50.000 0.00 0.00 0.00 4.35
2293 3254 0.736325 GACGACATGCTACAACGCCT 60.736 55.000 0.00 0.00 0.00 5.52
2294 3255 1.708027 GACGACATGCTACAACGCC 59.292 57.895 0.00 0.00 0.00 5.68
2295 3256 1.340465 CGACGACATGCTACAACGC 59.660 57.895 0.00 0.00 0.00 4.84
2296 3257 1.340465 GCGACGACATGCTACAACG 59.660 57.895 0.00 0.00 0.00 4.10
2297 3258 1.340465 CGCGACGACATGCTACAAC 59.660 57.895 0.00 0.00 0.00 3.32
2298 3259 0.665068 AACGCGACGACATGCTACAA 60.665 50.000 15.93 0.00 0.00 2.41
2299 3260 1.068832 GAACGCGACGACATGCTACA 61.069 55.000 15.93 0.00 0.00 2.74
2300 3261 1.624323 GAACGCGACGACATGCTAC 59.376 57.895 15.93 0.00 0.00 3.58
2301 3262 1.515519 GGAACGCGACGACATGCTA 60.516 57.895 15.93 0.00 0.00 3.49
2302 3263 2.809601 GGAACGCGACGACATGCT 60.810 61.111 15.93 0.00 0.00 3.79
2303 3264 3.109547 TGGAACGCGACGACATGC 61.110 61.111 15.93 0.00 0.00 4.06
2304 3265 2.769617 GTGGAACGCGACGACATG 59.230 61.111 15.93 0.00 0.00 3.21
2315 3276 4.025979 GCATATACAGTTACAGCGTGGAAC 60.026 45.833 5.30 5.30 41.48 3.62
2316 3277 4.116961 GCATATACAGTTACAGCGTGGAA 58.883 43.478 0.00 0.00 0.00 3.53
2317 3278 3.131400 TGCATATACAGTTACAGCGTGGA 59.869 43.478 0.00 0.00 0.00 4.02
2318 3279 3.453424 TGCATATACAGTTACAGCGTGG 58.547 45.455 0.00 0.00 0.00 4.94
2319 3280 5.920840 ACTATGCATATACAGTTACAGCGTG 59.079 40.000 6.92 0.00 0.00 5.34
2320 3281 6.085555 ACTATGCATATACAGTTACAGCGT 57.914 37.500 6.92 0.00 0.00 5.07
2321 3282 6.618770 GACTATGCATATACAGTTACAGCG 57.381 41.667 6.92 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.