>input_sequence_83178
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----------------------------------------ATGCTTGGGACTGAATGTTGTCCGAATTCCTTATGGCACT
ACTACGTTTGGATATATGCGTTTCTTCCAGGTTTCAATAAACTATACATTGTTGGGCTAGCAGCAATTTGCTGGGCAATT
TGGCTCGCTCGTAATCGTGCCACATTTGAGCGCAAATGGATAAATATTCCTTTTGAAGTTGTGTTTACATCGTGTGCATT
TCTGAATTATTGGGCAGGTTTACAGAAGCTTGGGATGATGGAGGTGGTGAAGAAGGGAGCGGAGATGCTGAAGGAGAACG
CCTCCCAGATGTTGTTGCTGTGTGGTCCACCGTCCCTTGATGAGGATGAACGCAAGG-ATAGCTGA--------------
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>chr5B_1_TraesCS5B01G508400
CTGAAAGTCAAGGATTACTACATGGCTGGGAGAGGGGTCCAAGTGAATAGAGGGGATGTTGCTAGACTTTGGATGTATGC
TCTAGAAGGAAAGATTCCTTTAAAAGATAAATTCCCTATGCTTTTTTATATCTATGTGGAACCAAACTGTACTGTAGACA
AAATAAACAATATGAATCATGTCTCTTCTTTTAGAAGAAGATTGCCTCCTGAGTTGATGCAACAATGGGGAGAGGTGAAA
AAAGATGTTCAAAATCCAATTCAAAATGAGCTCCCTGATGAGGTATACTGGGGACTTGATAATACTAGAAAGTACACAAC
AAAATCAATGTATAGGTGGCTGGAAAAGGACCTTGCTGGATCATGCTTTAAATGGATTTGGGAGGCATGCATGCCTCTAA
AAATTTAAATATTTATGTGGCAGGTATGTCAGGATGCTATCCTGACTAGAGACAACATGAAAAAAAGATAATGGCAGGGG
AACCCGCACTGCTTGTTTTGTGATCAGTTGGAAACAACCCATCACTTATTTTTTTTATGTCCAGTGTCTAGGGTGATTTG
GAGGACGGTAGGCGAAAATTGCCTTTGGAGCTCGTCCTCCATGGAGGCCTCTAAGTTAAATTTCAAATTTCATCGAAATT
TGTATTTTTACATTTCAAAAAATTCTGAAAATAATTACAGATATACATGAAAGCATAACACACATGTATGTAAATTTTCA
GGGCAAAATACATTGAAAGGAGGGCTGTGCAAAAAAGACAATTCTAGGACCTTTTAACACATGATACTATTCATCATCTC
AGGCCATAAATTTGTCTTTTTTGTACAGGTCACATTTCAACGTATTTTATTCTCAAATTTTACACACATACACATAACAT
CCTTGTTTACTTGCACAAATTTTTTCAATTTTTTTGAAACCAAAAAGTTTGAATTTTGATTTTTTTAAAAGGCCTCCATG
GAGGCCGGGAGCCAAACGTCCTTTCTCGACGGTAGACTCTATGCTTGGGACTGAATGTTGTCCGAATTCCTTATGGCACT
ACTACGTTTGGATATATGCGTTTCTTCCAGGTTTCAATAAACTATACATTGTTGGGCTAGCAGCAATTTGCTGGGCAATT
TGGCTCGCTCGTAATCGTGCCACATTTGAGCGCAAATGGATAAATATTCCTTTTGAAGTTGTGTTTACATCGTGTGCATT
TCTGAATTATTGGGCAGGTTTACAGAAGCTTGGGATGATGGAGGTGGTGAAGAAGGGAGCGGAGATGCTGAAGGAGAACG
CCTCCCAGATGTTGTTGCTGTGTGGTCCACCGTCCCTTGATGAGGATGAACGCAAGG-ATAGCTGATAGAAAAAGCA-GT
GAGGAACGATGATGTTTT-TTGGCTCCAGGGGATGTGCGGTTGCAGGAGGAAGATTGCCAGGCAAAAAAGGAGAAAAACT
TCAGCCTTTGTGTTTTGGGACTGAGTGGTATTGGTGTTT---------TCTGTTGAAAATGCAGGCTGGTTCATGGGTCT
GTACTTATACTATGGGTTTGTGCATGCGGTACTCTGTAGTTTCCTGTGCTTGTAGTGAGGTTTGGGTGACACCCAGGTTT
TCGCCCCA-TGGTCTGTCGTTCCTGATGACTGGCGCAGACTCTGGGTTTCCTGGTGTTGCTCCGAGCTCGCTTCTTCTCT
TTCCCTAGCAATTCTGGTTTCGG-TTTCAGGTGAGACAATGTATTTCCGTTATGATATAGAGTATAATGGAAAGGGG-GA
AGCCCGGTTCGAAAAAAAAGGAATGCGGACCCCTCACACATGGACAGCCTGCGCCTTCGTGGCCGTGTCCGCCATTGACG
TGGCTGTCCTGCAGGTCGGACAAGTGCAACCGCAGCGAGCACGCTGGGAGCAGAGCACGTACGTTTGATCACGCAGTTTT
TGTGCTTGTGTGAACAGAGAAGCAGTAGCAACCTAGCAG-----------------------------------------
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-----------------GATGAGGAGATACTTTTGTTCTTCTGACTTCTTGTACGGATTTCG-------TTTTCTTACTT
GCCGGCTAGTGGTGTTGGGAATGAAGAGATCCAGGCGATGGGGAATTGGGGGCGGTCCCGAGGAAGGAGGAGTGGAATCC
GTGCACGCGAGTCGCCAGCCAGATTTGTTTTGGAAACAATAGAAAGACGGAGAAAGAGCCTCGCATCGCATCTGCACCAA
AAATCCACATCCAGACGACCACGTCGTCCGAGTAGTACCTTGCAGTGACTTCAGCCCGGACTCCAGGCTTCTCTTGCATC
GAGCTGCTGCTCCTGGTTTTCACGGCAGCGTGGCGCTTGACGTTGGGAATGGAAGGCGTTGTAGCATGTCGTCGCGTTCC
ACGCTGTAACTGTATATGCATAGTC
>chr5B_1
CTGAAAGTCAAGGATTACTACATGGCTGGGAGAGGGGTCCAAGTGAATTGAGGGGATGTTGCTAGACTTTGGATGGATGC
TCTAAAAGGAAAGATTCATTTAAAAGATAAATTCCCTATGCTTTTTGATATCTATGTGGAACCAAACTGTACTGTAGAAA
AAATAAACAATATGAATCATGTCTCTTCTTTTAGAAGAAGACTACCTCCTGAGTTGATGCAACAATGGGGAGAGGTGAAA
AAAGATGTTCAAAATCTAATTCAAAATGAGCTCCCTGATGAGGTATACTGGAAACTTGATAGTACTAAAAAGTACACCAC
AAAATCAATGTATAGGTGGCTGGAAAAGGACCTTGTTGGATCATGCTTTAAATGGATTTGGGAGGCCTACATTCCTCTTA
AAATTTAAATATTTATGTGGCAGGTCTGTCTGGATGCTATCCTGACTAGAGATAACATGAAAAAA-TACAATGGCAGGGG
AACCCGCACTGCTCATTTTGTGACCAGTTGGAAACAGCCCAGCACTTATTTTTCTTATGTCTAGTCTCTAGGGTGATTTG
GAGGACGGTAGGCTCGTCC-------------------------------------------------------------
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--------------------------------------CTATGCTTGGGACTGAATGTTGTCTGAATTCCTTAGGGTAGT
ACTATGTTTGGATATATGCGTTTCCTCCAGGTTTCGATAAACTGTATACTGTTGGGATAGCAGCAATTTGCTGGGTAATT
TGGCTCGCTCAAAATTGTGCCACATTTGAGCGCAAATGGATTAATACTCCTTTTGAAGTTGTGTTTAGATCATGTGGTTT
TTTGCATTATTGGGCAGGTTTACAGAAGCCTGGGATGATGGAGGTGATGAATAAGGGAACGAAGATGTTGAAGGAGAACG
CCTCCCAAATGTTGTTGCTGTGTGGTCCACCGCCCCTTGATGAGGGTGAACGCAAGGAATAGCTGATAGAAAAAAGCGGT
GAGGAACGGTGATGTTTT-TTGGCTCCAGGGGATGTGCTGTTGCAGGAGGAAGATTGTCCAGCAAAAAGGAGAAC-AGTT
TCAGCCTATGTGTGTTGGGACTGAGTGGTATTGGTGTTTTTTGTGTTTTCTGTTGAAACTGTAGGCAGGTTCATGGGTAT
GTACTTA--CTATGATTTTGTGCATGCG-TACTCCGTAGTTTCCTGTGCTTGTAGTGTGGTTTGGGTGACACCCAGGTTT
CCGCCCCA-TGGTCTGTCGTTCCTGATGACAGGCGCAGACTGTGGGTTTCCTGGTGTTGCTCCGAGCTCGCTTCTTCTCT
TTCCCTAGCAATTTTGATTTCGG-TTT-AGCTGAGACGATGTATTGCCCTTATGATA-----TATAATGGAAAGGGGAGA
AGCCCGGTACAAAAAAA---------------------------------------------------------------
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>chr2D_37
------------------------------------GTCCAAGTGAATAGAGGGGATGTTGCTAGACATTGGATGGACGC
TCTAGAAGAAAAGATTCCATTAAAAGATAAATTCCCTATGCTTTTTGATATCTGTGTGGAACCAAACTGTATTGTAGACA
AAATAAGCAATATGAATCATGTCTCTTCTTTTAGAAGAAGACTACCTCCTGAGTTGATGCAACAATGGGGAGAGGTGAAA
AAAGATGTTCAAAATCTAATTCAAAATGAGCTCCCTGATGAGGTATACTGGAAACTTGATAGTACTAGAAAGTACACCAC
GAAATCAATGTATAGGTGGCTAGAAAAGGACCTTGCTGGAGCATGCTTTAAATGGATTTGGGAGGCCTGCATGCGTCTAA
AAATTCAAATATTTATGTGGCAGGTCTGTCAGGATGCTATCTT-ACTAGAGATAACATGAAAAAAATACAATGGCAGGGG
AACCCGCATTGCTCGTTTTGTGATTAGTTGGAAACAACCCAGCACTTATTTTTCTTATGTCCAGTTTCTAGGGTGATTTG
GAGGACGGTAGGT-------------------------------------------------------------------
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-------------------------------------TCTATGCTTGGGACTGAATGTTGTCCGAATTCCTTATGGCAGT
ACTATGTTTGGATATATGCGTTTCTTCCAGGTTTCGATAAACTGTACACTGTTGGGCTAGCAGCAATTTGCTGGGCAATT
TGGCTCGCCCGAAATTCTGCCACGTTTGAGCGCAAATGGATAAATACTCCTTTTGAAGTTGTGTTTACATCTTGTGCTTT
TCTGAATTATTGGGCAGGTTTACAGAAGCCTGGGATGATGGAGGTGGTGAAGAAGGGAGCGGAGATGCTGAAGGAGAACG
CCTCCCAGATGTTGTTGTTGTGTGGTCCATCGCCCCTTGATGAGGACGAACGCAAGG-ATAGCTGATAGAAAAAAGCGAT
GAGGAACGATGATGTTTTTTTGGCTCTAGGGGATGTGCGGTTGCAGGAGGAAGATTGCCAGG-AAAAAAGGAGAAAAGCT
TCAGCCTCTGTGTTTTGCGACTAAGTGGTATTGGTG---------TTTTCTGTTGAAACTGTAGGCTGGTTCATGGGTCT
ATACTAATACTATGGGTTTGTGCATGCGGTACTCTGTAGTTTCCTGTGCTTGTAGTGCGGTTTGGGTGACACCCAGGTTT
TCACCCCAGTGGTGTGTCGTTCCCGA-GACAGGCGCAGACTGTGGGTTTCTTGGTGTTGCTCTCAGCTCACTTCTTCTCT
TTCCCTAGCAATTCTGGTTTTAGTTTT-AGCTGAGACGATGTATTTCCGTTATGAT------TATAATGGAAAGGGGGGA
AGCCCAGTTCGAAGAAAAAA------------------------------------------------------------
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>chr5D_1787
GGAAGCTTCCGCCTTGCCGGCCAA--------------------------------------------------------
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------------------------------------------------------------------GTTCGCCATTGACG
TGGATGTCCTGCAGGTCGGACCGGTGCAACCGCAGCGAGCACGCTGGGAGTAGAGCTCGTACGTATGATCACGCAGTTTT
TGTGCTTGTGTGAACAGAGAAGTAGTAGCAGGATGAGGAGTTTTTTTTTTCCTTTTTTTGAGGAAATTGCGAAGTTCCAT
TCAAATAGCAAACAGCTTACACAAAACATGGCATCTCTCTAGAACATTCCAAAAAAGAGAGCTCACCAAGAAAATTACAG
GAAAATCCAAGAATAAGAAAATCTGCAGAGGGTCCCTGTAACCACCATCTTCACGCCCATGGAAACCAGCCGCCACCGTC
GCCATAGCATCCGGCGGAGGAGAGAAACCCAGGACACCTACTTGCCATGATCCAATAAAGCGCCATGGCAGCCTTGCTGC
GTTACGAACCTCGGAATAGACGTGGTCGCGAACAACGACGTGCTTGACGATGTGGATCGTCGGCCGGGGAAAATCCCCAC
GCCCTTGGATCTCGGCCCTGACGTCTACGAACGTTGCTGCTGCCGGAGAAACTCCAGACCCGCCGGCCTTCTTCCACTGC
CTAGCTTTCAGGCGAGCCACCTCCTGGACGAAGTCGACGCTGCTACGCCGATCATCCCCTAAACAGGAACTTCCGGCTCC
TCGCCGGCGCCGGAGAAGACACTGACGTGATGCGGACAGAGCCGAAGAACAAACTCCCGAAGCGAGGTCTCCGCCGTCGC
GTCGACGGCCTCGCCTGGAACAACTACGTCCACCGGTCTGATAGCACGGTGGAGAAACAAGTCCGCGGCACCTCGCCGTC
GTCGCGGAACGCCGGCGAGTCGGTGGCCCGGAAGACATTATTCATGGTGGTGACGTTGACACCGCCCGAACGCCGTCACA
GCAAGAAACCTATCCTACCTACTACAGACGAAAGGAGCCGGGCTCCCCCACCCTCCTGCCGCCGCCAAAGCGACGAGAGG
AGAGCAGGAGAGCCCGCTCCTAACCAGCCGCAGAAGTGGAACCGCTCGCCTCCGCTCGCCTGTGTTGGAGAGAGAGGAAC
AGTCACTCGCTCGCCTTGACGAGGAGATATTTTTGTTCTTCTGATTTCTTGTACGCCTAGTGTAAGTTTTTTTCTTACTG
GCCAGCTAGTGGTGTTGGGAATGAAGAGATCGAGTCGAGGGGGAATCGGGGGCGGTCCCGAGGAAGAAG-AGTGGAATCC
GTGCACGCGAGTCGCCAGCCAGATTTGTTTTCGAAACAATAAGAAAGAA-AGAAAGAGCCTCGCATCGCATCTTCACCAA
AAATCCAGATCCAGACGACCACGCCGTCGGATTAGTACCTTGCAGTGACTTCAGCCCGGACTCCAGACTTCTCTTGCA--
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>SNPs
---------------------------------------------------------------------------S----
----------------------------------------------S---------------------------------
-----------------------------------------S-S------------------------------------
----------------S----------------------------------SS--------S---------------S--
------------------------------------------------------------------S-------------
-------------------------S--------------------------S-------------S-S-----------
-------------S---------------------------S-----------S-----------S--------------
-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------S-
----S------------------------------S-------S----S-------------------------------
-----------S---S------------------------------S------------------------S-----S--
-----------------------------S--------------------------------------------------
--------------------------------S-----------------------------------------SSS---
-----------------------------------------------------------------------------S--
-------S--------------------------------------------------S--S------------------
---------------------------------------------------------S----------------------
------------------------------S----------S--------------------------------------
---------------------------S--S------S-------------------SSSSS------------------
-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-----------
---S-----------------SS---------------------------S-----S-------S---------------
----------------------S-------SSS-SSSSS-----------------------------------------
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-------------------S---------S--------------S----------SS-SSS------------------S
---S---------------------------S--S---S-------S-------------------S--S----------
-------------------------------S---------SS--SSSSS-----------------------S------
-------S---------------S----S--S----------------------------------S-----------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS
>forward_582
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--GGACGGTAGGCGAAAATTGC----------------------------------------------------------
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>reverse_1788
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---------------------------GACCCCTCACACATGGACAG---------------------------------
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