Multiple sequence alignment - TraesCS5B01G504000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G504000 chr5B 100.000 3663 0 0 1 3663 670127164 670130826 0.000000e+00 6765
1 TraesCS5B01G504000 chr5B 92.453 265 20 0 2286 2550 670303710 670303446 2.670000e-101 379
2 TraesCS5B01G504000 chr5B 86.740 181 23 1 2209 2389 670140736 670140915 2.230000e-47 200
3 TraesCS5B01G504000 chr4A 88.596 2394 150 68 474 2783 641384353 641381999 0.000000e+00 2795
4 TraesCS5B01G504000 chr4A 81.935 620 43 25 3025 3599 641381507 641380912 9.270000e-126 460
5 TraesCS5B01G504000 chr5D 93.226 1432 57 21 1377 2785 530915965 530917379 0.000000e+00 2071
6 TraesCS5B01G504000 chr5D 92.269 983 47 12 384 1352 530914999 530915966 0.000000e+00 1367
7 TraesCS5B01G504000 chr5D 92.835 321 19 1 3292 3608 530939656 530939976 2.580000e-126 462
8 TraesCS5B01G504000 chr5D 93.137 204 8 3 2499 2696 530924186 530924389 9.950000e-76 294
9 TraesCS5B01G504000 chr5D 93.600 125 8 0 2379 2503 530921458 530921582 1.740000e-43 187
10 TraesCS5B01G504000 chr3A 80.374 214 34 7 1801 2010 453307661 453307870 4.900000e-34 156
11 TraesCS5B01G504000 chr3A 83.594 128 12 4 883 1009 557012368 557012487 1.080000e-20 111
12 TraesCS5B01G504000 chr3B 79.343 213 36 7 1801 2009 433759710 433759918 3.810000e-30 143
13 TraesCS5B01G504000 chr3D 74.850 334 68 15 1801 2126 335207781 335208106 1.770000e-28 137
14 TraesCS5B01G504000 chr3D 82.812 128 13 4 883 1009 428522096 428521977 5.000000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G504000 chr5B 670127164 670130826 3662 False 6765.0 6765 100.0000 1 3663 1 chr5B.!!$F1 3662
1 TraesCS5B01G504000 chr4A 641380912 641384353 3441 True 1627.5 2795 85.2655 474 3599 2 chr4A.!!$R1 3125
2 TraesCS5B01G504000 chr5D 530914999 530917379 2380 False 1719.0 2071 92.7475 384 2785 2 chr5D.!!$F2 2401
3 TraesCS5B01G504000 chr5D 530921458 530924389 2931 False 240.5 294 93.3685 2379 2696 2 chr5D.!!$F3 317

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 161 0.040351 TGAGACTCCTGGACTCCTGG 59.960 60.0 13.77 13.77 42.93 4.45 F
161 162 0.040499 GAGACTCCTGGACTCCTGGT 59.960 60.0 18.16 2.83 42.31 4.00 F
162 163 0.040499 AGACTCCTGGACTCCTGGTC 59.960 60.0 18.16 10.95 42.31 4.02 F
506 507 0.106819 GTGACGGGACTCCCTAGCTA 60.107 60.0 12.62 0.00 42.67 3.32 F
1405 1474 0.160182 GACGTTACGTGCCGACAAAG 59.840 55.0 17.19 0.00 41.37 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1021 1069 0.105760 AGGAGGAGGCTGATCACGAT 60.106 55.000 0.00 0.0 0.00 3.73 R
1786 1863 0.170339 CCGTCTGCATCACACGTAGA 59.830 55.000 0.00 0.0 0.00 2.59 R
2032 2110 3.995506 GATGCCCCACGGGTTGAGG 62.996 68.421 0.41 0.0 46.51 3.86 R
2302 2380 1.303236 CACCATGCCGAGAAACCCA 60.303 57.895 0.00 0.0 0.00 4.51 R
2992 6011 0.037232 GGTATCGCACCCTATGAGGC 60.037 60.000 0.00 0.0 42.07 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.654793 AAAAACAAACTTTTAGCATGCGAA 57.345 29.167 13.01 11.10 0.00 4.70
24 25 5.888412 AAACAAACTTTTAGCATGCGAAG 57.112 34.783 21.83 21.83 0.00 3.79
39 40 1.883476 CGAAGCTCTTTTTAAGCGCC 58.117 50.000 2.29 0.00 44.59 6.53
40 41 1.464997 CGAAGCTCTTTTTAAGCGCCT 59.535 47.619 2.29 0.00 44.59 5.52
41 42 2.726066 CGAAGCTCTTTTTAAGCGCCTG 60.726 50.000 2.29 0.00 44.59 4.85
42 43 1.897560 AGCTCTTTTTAAGCGCCTGT 58.102 45.000 2.29 0.00 44.59 4.00
43 44 2.230660 AGCTCTTTTTAAGCGCCTGTT 58.769 42.857 2.29 0.00 44.59 3.16
44 45 2.030805 AGCTCTTTTTAAGCGCCTGTTG 60.031 45.455 2.29 0.00 44.59 3.33
45 46 2.031157 GCTCTTTTTAAGCGCCTGTTGA 60.031 45.455 2.29 0.00 33.24 3.18
46 47 3.550030 GCTCTTTTTAAGCGCCTGTTGAA 60.550 43.478 2.29 0.00 33.24 2.69
47 48 4.222114 CTCTTTTTAAGCGCCTGTTGAAG 58.778 43.478 2.29 2.05 0.00 3.02
48 49 3.880490 TCTTTTTAAGCGCCTGTTGAAGA 59.120 39.130 2.29 4.66 0.00 2.87
49 50 4.518970 TCTTTTTAAGCGCCTGTTGAAGAT 59.481 37.500 2.29 0.00 0.00 2.40
50 51 3.829886 TTTAAGCGCCTGTTGAAGATG 57.170 42.857 2.29 0.00 0.00 2.90
51 52 1.086696 TAAGCGCCTGTTGAAGATGC 58.913 50.000 2.29 0.00 0.00 3.91
52 53 0.607489 AAGCGCCTGTTGAAGATGCT 60.607 50.000 2.29 0.00 37.65 3.79
53 54 1.023513 AGCGCCTGTTGAAGATGCTC 61.024 55.000 2.29 0.00 32.65 4.26
54 55 1.023513 GCGCCTGTTGAAGATGCTCT 61.024 55.000 0.00 0.00 0.00 4.09
55 56 1.740380 GCGCCTGTTGAAGATGCTCTA 60.740 52.381 0.00 0.00 0.00 2.43
56 57 2.621338 CGCCTGTTGAAGATGCTCTAA 58.379 47.619 0.00 0.00 0.00 2.10
57 58 2.606725 CGCCTGTTGAAGATGCTCTAAG 59.393 50.000 0.00 0.00 0.00 2.18
58 59 2.941720 GCCTGTTGAAGATGCTCTAAGG 59.058 50.000 0.00 0.00 0.00 2.69
59 60 3.620966 GCCTGTTGAAGATGCTCTAAGGT 60.621 47.826 0.00 0.00 0.00 3.50
60 61 4.383118 GCCTGTTGAAGATGCTCTAAGGTA 60.383 45.833 0.00 0.00 0.00 3.08
61 62 5.355596 CCTGTTGAAGATGCTCTAAGGTAG 58.644 45.833 0.00 0.00 0.00 3.18
62 63 4.759782 TGTTGAAGATGCTCTAAGGTAGC 58.240 43.478 0.00 0.00 40.50 3.58
63 64 4.467795 TGTTGAAGATGCTCTAAGGTAGCT 59.532 41.667 0.00 0.00 40.73 3.32
64 65 5.656859 TGTTGAAGATGCTCTAAGGTAGCTA 59.343 40.000 0.00 0.00 40.73 3.32
65 66 6.325028 TGTTGAAGATGCTCTAAGGTAGCTAT 59.675 38.462 0.00 0.00 40.73 2.97
66 67 6.582677 TGAAGATGCTCTAAGGTAGCTATC 57.417 41.667 0.00 0.00 40.73 2.08
67 68 5.478679 TGAAGATGCTCTAAGGTAGCTATCC 59.521 44.000 0.00 2.33 40.73 2.59
68 69 5.269554 AGATGCTCTAAGGTAGCTATCCT 57.730 43.478 0.00 4.76 40.73 3.24
69 70 5.650283 AGATGCTCTAAGGTAGCTATCCTT 58.350 41.667 22.80 22.80 45.72 3.36
70 71 5.714806 AGATGCTCTAAGGTAGCTATCCTTC 59.285 44.000 22.86 13.66 43.26 3.46
71 72 5.068215 TGCTCTAAGGTAGCTATCCTTCT 57.932 43.478 22.86 9.89 43.26 2.85
72 73 5.074115 TGCTCTAAGGTAGCTATCCTTCTC 58.926 45.833 22.86 14.35 43.26 2.87
73 74 4.155280 GCTCTAAGGTAGCTATCCTTCTCG 59.845 50.000 22.86 15.63 43.26 4.04
74 75 5.553123 CTCTAAGGTAGCTATCCTTCTCGA 58.447 45.833 22.86 17.76 43.26 4.04
75 76 5.553123 TCTAAGGTAGCTATCCTTCTCGAG 58.447 45.833 22.86 17.04 43.26 4.04
76 77 4.440826 AAGGTAGCTATCCTTCTCGAGA 57.559 45.455 12.08 12.08 40.80 4.04
77 78 4.440826 AGGTAGCTATCCTTCTCGAGAA 57.559 45.455 25.57 25.57 30.18 2.87
86 87 2.017138 CTTCTCGAGAAGGAAAGCCC 57.983 55.000 36.99 0.00 45.79 5.19
87 88 0.613777 TTCTCGAGAAGGAAAGCCCC 59.386 55.000 23.74 0.00 34.66 5.80
88 89 0.252284 TCTCGAGAAGGAAAGCCCCT 60.252 55.000 14.01 0.00 38.42 4.79
89 90 1.006758 TCTCGAGAAGGAAAGCCCCTA 59.993 52.381 14.01 0.00 34.95 3.53
90 91 1.831736 CTCGAGAAGGAAAGCCCCTAA 59.168 52.381 6.58 0.00 34.95 2.69
91 92 1.553704 TCGAGAAGGAAAGCCCCTAAC 59.446 52.381 0.00 0.00 34.95 2.34
92 93 1.278127 CGAGAAGGAAAGCCCCTAACA 59.722 52.381 0.00 0.00 34.95 2.41
93 94 2.712709 GAGAAGGAAAGCCCCTAACAC 58.287 52.381 0.00 0.00 34.95 3.32
94 95 1.354705 AGAAGGAAAGCCCCTAACACC 59.645 52.381 0.00 0.00 34.95 4.16
95 96 1.074889 GAAGGAAAGCCCCTAACACCA 59.925 52.381 0.00 0.00 34.95 4.17
96 97 0.698818 AGGAAAGCCCCTAACACCAG 59.301 55.000 0.00 0.00 34.07 4.00
97 98 0.965866 GGAAAGCCCCTAACACCAGC 60.966 60.000 0.00 0.00 0.00 4.85
98 99 0.251165 GAAAGCCCCTAACACCAGCA 60.251 55.000 0.00 0.00 0.00 4.41
99 100 0.409484 AAAGCCCCTAACACCAGCAT 59.591 50.000 0.00 0.00 0.00 3.79
100 101 0.323725 AAGCCCCTAACACCAGCATG 60.324 55.000 0.00 0.00 0.00 4.06
101 102 2.418083 GCCCCTAACACCAGCATGC 61.418 63.158 10.51 10.51 31.97 4.06
102 103 1.001020 CCCCTAACACCAGCATGCA 60.001 57.895 21.98 0.00 31.97 3.96
103 104 0.611618 CCCCTAACACCAGCATGCAA 60.612 55.000 21.98 0.00 31.97 4.08
104 105 1.255882 CCCTAACACCAGCATGCAAA 58.744 50.000 21.98 0.00 31.97 3.68
105 106 1.617850 CCCTAACACCAGCATGCAAAA 59.382 47.619 21.98 0.00 31.97 2.44
106 107 2.610232 CCCTAACACCAGCATGCAAAAC 60.610 50.000 21.98 0.00 31.97 2.43
107 108 2.035704 CCTAACACCAGCATGCAAAACA 59.964 45.455 21.98 0.00 31.97 2.83
108 109 2.914695 AACACCAGCATGCAAAACAT 57.085 40.000 21.98 0.00 40.66 2.71
109 110 2.443887 ACACCAGCATGCAAAACATC 57.556 45.000 21.98 0.00 36.64 3.06
110 111 1.687660 ACACCAGCATGCAAAACATCA 59.312 42.857 21.98 0.00 36.64 3.07
111 112 2.288579 ACACCAGCATGCAAAACATCAG 60.289 45.455 21.98 2.07 36.64 2.90
112 113 2.029739 CACCAGCATGCAAAACATCAGA 60.030 45.455 21.98 0.00 36.64 3.27
113 114 2.829720 ACCAGCATGCAAAACATCAGAT 59.170 40.909 21.98 0.00 36.64 2.90
114 115 4.018490 ACCAGCATGCAAAACATCAGATA 58.982 39.130 21.98 0.00 36.64 1.98
115 116 4.463539 ACCAGCATGCAAAACATCAGATAA 59.536 37.500 21.98 0.00 36.64 1.75
116 117 5.128171 ACCAGCATGCAAAACATCAGATAAT 59.872 36.000 21.98 0.00 36.64 1.28
117 118 6.046593 CCAGCATGCAAAACATCAGATAATT 58.953 36.000 21.98 0.00 36.64 1.40
118 119 7.147863 ACCAGCATGCAAAACATCAGATAATTA 60.148 33.333 21.98 0.00 36.64 1.40
119 120 7.707464 CCAGCATGCAAAACATCAGATAATTAA 59.293 33.333 21.98 0.00 36.64 1.40
120 121 9.089601 CAGCATGCAAAACATCAGATAATTAAA 57.910 29.630 21.98 0.00 36.64 1.52
121 122 9.090692 AGCATGCAAAACATCAGATAATTAAAC 57.909 29.630 21.98 0.00 36.64 2.01
122 123 8.330302 GCATGCAAAACATCAGATAATTAAACC 58.670 33.333 14.21 0.00 36.64 3.27
123 124 9.590451 CATGCAAAACATCAGATAATTAAACCT 57.410 29.630 0.00 0.00 36.64 3.50
124 125 8.984891 TGCAAAACATCAGATAATTAAACCTG 57.015 30.769 0.00 0.00 0.00 4.00
125 126 8.584157 TGCAAAACATCAGATAATTAAACCTGT 58.416 29.630 10.63 1.15 0.00 4.00
131 132 9.261180 ACATCAGATAATTAAACCTGTATGTCG 57.739 33.333 15.24 0.00 29.85 4.35
132 133 9.261180 CATCAGATAATTAAACCTGTATGTCGT 57.739 33.333 10.63 0.00 0.00 4.34
133 134 8.867112 TCAGATAATTAAACCTGTATGTCGTC 57.133 34.615 10.63 0.00 0.00 4.20
134 135 7.646526 TCAGATAATTAAACCTGTATGTCGTCG 59.353 37.037 10.63 0.00 0.00 5.12
135 136 7.646526 CAGATAATTAAACCTGTATGTCGTCGA 59.353 37.037 0.00 0.00 0.00 4.20
136 137 8.192774 AGATAATTAAACCTGTATGTCGTCGAA 58.807 33.333 0.00 0.00 0.00 3.71
137 138 8.882415 ATAATTAAACCTGTATGTCGTCGAAT 57.118 30.769 0.00 0.00 0.00 3.34
138 139 6.583912 ATTAAACCTGTATGTCGTCGAATG 57.416 37.500 0.00 0.00 0.00 2.67
139 140 1.922570 ACCTGTATGTCGTCGAATGC 58.077 50.000 0.00 0.00 0.00 3.56
140 141 1.476891 ACCTGTATGTCGTCGAATGCT 59.523 47.619 0.00 0.00 0.00 3.79
141 142 2.094182 ACCTGTATGTCGTCGAATGCTT 60.094 45.455 0.00 0.00 0.00 3.91
142 143 2.282555 CCTGTATGTCGTCGAATGCTTG 59.717 50.000 0.00 0.00 0.00 4.01
143 144 3.179048 CTGTATGTCGTCGAATGCTTGA 58.821 45.455 0.00 0.00 0.00 3.02
144 145 3.179048 TGTATGTCGTCGAATGCTTGAG 58.821 45.455 0.00 0.00 0.00 3.02
145 146 2.654749 ATGTCGTCGAATGCTTGAGA 57.345 45.000 0.00 0.00 0.00 3.27
146 147 1.698165 TGTCGTCGAATGCTTGAGAC 58.302 50.000 0.00 0.00 0.00 3.36
147 148 1.269723 TGTCGTCGAATGCTTGAGACT 59.730 47.619 0.00 0.00 0.00 3.24
148 149 1.914700 GTCGTCGAATGCTTGAGACTC 59.085 52.381 0.00 0.00 0.00 3.36
149 150 1.135373 TCGTCGAATGCTTGAGACTCC 60.135 52.381 0.00 0.00 0.00 3.85
150 151 1.135257 CGTCGAATGCTTGAGACTCCT 60.135 52.381 0.00 0.00 0.00 3.69
151 152 2.266554 GTCGAATGCTTGAGACTCCTG 58.733 52.381 0.00 0.00 0.00 3.86
152 153 1.205655 TCGAATGCTTGAGACTCCTGG 59.794 52.381 0.00 0.00 0.00 4.45
153 154 1.205655 CGAATGCTTGAGACTCCTGGA 59.794 52.381 0.00 0.00 0.00 3.86
154 155 2.626840 GAATGCTTGAGACTCCTGGAC 58.373 52.381 0.00 0.00 0.00 4.02
155 156 1.949799 ATGCTTGAGACTCCTGGACT 58.050 50.000 0.00 0.00 0.00 3.85
156 157 1.261480 TGCTTGAGACTCCTGGACTC 58.739 55.000 7.25 7.25 0.00 3.36
157 158 0.534873 GCTTGAGACTCCTGGACTCC 59.465 60.000 10.76 0.00 0.00 3.85
158 159 1.894978 GCTTGAGACTCCTGGACTCCT 60.895 57.143 10.76 0.64 0.00 3.69
159 160 1.824230 CTTGAGACTCCTGGACTCCTG 59.176 57.143 10.76 0.00 0.00 3.86
160 161 0.040351 TGAGACTCCTGGACTCCTGG 59.960 60.000 13.77 13.77 42.93 4.45
161 162 0.040499 GAGACTCCTGGACTCCTGGT 59.960 60.000 18.16 2.83 42.31 4.00
162 163 0.040499 AGACTCCTGGACTCCTGGTC 59.960 60.000 18.16 10.95 42.31 4.02
163 164 0.251832 GACTCCTGGACTCCTGGTCA 60.252 60.000 18.16 2.31 46.16 4.02
164 165 0.543174 ACTCCTGGACTCCTGGTCAC 60.543 60.000 18.16 0.00 46.16 3.67
165 166 0.252012 CTCCTGGACTCCTGGTCACT 60.252 60.000 18.16 0.00 46.16 3.41
166 167 0.251832 TCCTGGACTCCTGGTCACTC 60.252 60.000 18.16 0.00 46.16 3.51
167 168 1.599606 CCTGGACTCCTGGTCACTCG 61.600 65.000 12.05 0.00 46.16 4.18
168 169 2.219325 CTGGACTCCTGGTCACTCGC 62.219 65.000 0.00 0.00 46.16 5.03
169 170 1.979693 GGACTCCTGGTCACTCGCT 60.980 63.158 0.00 0.00 46.16 4.93
170 171 1.214062 GACTCCTGGTCACTCGCTG 59.786 63.158 0.00 0.00 43.94 5.18
171 172 1.528292 GACTCCTGGTCACTCGCTGT 61.528 60.000 0.00 0.00 43.94 4.40
172 173 0.251209 ACTCCTGGTCACTCGCTGTA 60.251 55.000 0.00 0.00 0.00 2.74
173 174 0.171455 CTCCTGGTCACTCGCTGTAC 59.829 60.000 0.00 0.00 0.00 2.90
174 175 0.251209 TCCTGGTCACTCGCTGTACT 60.251 55.000 0.00 0.00 0.00 2.73
175 176 0.171455 CCTGGTCACTCGCTGTACTC 59.829 60.000 0.00 0.00 0.00 2.59
176 177 1.169577 CTGGTCACTCGCTGTACTCT 58.830 55.000 0.00 0.00 0.00 3.24
177 178 0.881796 TGGTCACTCGCTGTACTCTG 59.118 55.000 0.00 0.00 0.00 3.35
178 179 0.882474 GGTCACTCGCTGTACTCTGT 59.118 55.000 0.00 0.00 0.00 3.41
179 180 2.082231 GGTCACTCGCTGTACTCTGTA 58.918 52.381 0.00 0.00 0.00 2.74
180 181 2.096174 GGTCACTCGCTGTACTCTGTAG 59.904 54.545 0.00 0.00 0.00 2.74
181 182 1.738350 TCACTCGCTGTACTCTGTAGC 59.262 52.381 0.00 0.00 0.00 3.58
199 200 2.510948 CGTAGCTCTAATGCGCAGG 58.489 57.895 18.32 8.91 38.13 4.85
200 201 1.552348 CGTAGCTCTAATGCGCAGGC 61.552 60.000 18.32 14.36 38.13 4.85
201 202 1.069765 TAGCTCTAATGCGCAGGCC 59.930 57.895 18.32 0.00 38.85 5.19
202 203 1.685355 TAGCTCTAATGCGCAGGCCA 61.685 55.000 18.32 1.16 38.85 5.36
203 204 2.828128 GCTCTAATGCGCAGGCCAC 61.828 63.158 18.32 0.00 38.85 5.01
204 205 2.511373 TCTAATGCGCAGGCCACG 60.511 61.111 18.32 13.39 38.85 4.94
227 228 2.416678 ACGCCCGTACGTTGTTGA 59.583 55.556 15.21 0.00 45.75 3.18
228 229 1.950630 ACGCCCGTACGTTGTTGAC 60.951 57.895 15.21 0.00 45.75 3.18
288 289 2.105128 CCGTCGTGGCTCATCTCC 59.895 66.667 0.00 0.00 0.00 3.71
289 290 2.105128 CGTCGTGGCTCATCTCCC 59.895 66.667 0.00 0.00 0.00 4.30
290 291 2.710902 CGTCGTGGCTCATCTCCCA 61.711 63.158 0.00 0.00 0.00 4.37
291 292 1.153549 GTCGTGGCTCATCTCCCAC 60.154 63.158 0.00 0.00 46.25 4.61
293 294 2.512515 GTGGCTCATCTCCCACGC 60.513 66.667 0.00 0.00 41.75 5.34
294 295 4.147449 TGGCTCATCTCCCACGCG 62.147 66.667 3.53 3.53 0.00 6.01
308 309 4.925576 CGCGCCGCCTAGATCGTT 62.926 66.667 2.28 0.00 0.00 3.85
309 310 3.330853 GCGCCGCCTAGATCGTTG 61.331 66.667 0.00 0.00 0.00 4.10
310 311 3.330853 CGCCGCCTAGATCGTTGC 61.331 66.667 0.00 0.00 0.00 4.17
311 312 2.967615 GCCGCCTAGATCGTTGCC 60.968 66.667 0.00 0.00 0.00 4.52
312 313 2.658593 CCGCCTAGATCGTTGCCG 60.659 66.667 0.00 0.00 0.00 5.69
322 323 2.201959 CGTTGCCGACGTAAACGC 60.202 61.111 16.09 3.18 46.49 4.84
323 324 2.929848 CGTTGCCGACGTAAACGCA 61.930 57.895 16.09 5.64 46.49 5.24
324 325 1.494189 GTTGCCGACGTAAACGCAT 59.506 52.632 1.74 0.00 44.43 4.73
325 326 0.714994 GTTGCCGACGTAAACGCATA 59.285 50.000 1.74 0.00 44.43 3.14
326 327 0.714994 TTGCCGACGTAAACGCATAC 59.285 50.000 1.74 0.00 44.43 2.39
338 339 3.058351 GCATACGCGCGGTATACG 58.942 61.111 35.22 16.38 39.86 3.06
339 340 1.727022 GCATACGCGCGGTATACGT 60.727 57.895 35.22 13.81 46.52 3.57
340 341 0.452618 GCATACGCGCGGTATACGTA 60.453 55.000 35.22 15.77 45.26 3.57
341 342 1.241744 CATACGCGCGGTATACGTAC 58.758 55.000 35.22 0.00 44.15 3.67
342 343 0.179250 ATACGCGCGGTATACGTACG 60.179 55.000 35.22 15.01 44.15 3.67
343 344 2.053116 CGCGCGGTATACGTACGT 60.053 61.111 25.98 25.98 46.52 3.57
344 345 1.200594 CGCGCGGTATACGTACGTA 59.799 57.895 28.62 28.62 46.52 3.57
345 346 1.047542 CGCGCGGTATACGTACGTAC 61.048 60.000 28.99 20.10 46.52 3.67
355 356 3.488494 CGTACGTACGTCTCTGCTC 57.512 57.895 33.95 6.92 44.13 4.26
356 357 0.997932 CGTACGTACGTCTCTGCTCT 59.002 55.000 33.95 0.00 44.13 4.09
357 358 1.392853 CGTACGTACGTCTCTGCTCTT 59.607 52.381 33.95 0.00 44.13 2.85
358 359 2.534544 CGTACGTACGTCTCTGCTCTTC 60.535 54.545 33.95 0.20 44.13 2.87
359 360 1.810959 ACGTACGTCTCTGCTCTTCT 58.189 50.000 16.72 0.00 0.00 2.85
360 361 1.465387 ACGTACGTCTCTGCTCTTCTG 59.535 52.381 16.72 0.00 0.00 3.02
361 362 1.792273 CGTACGTCTCTGCTCTTCTGC 60.792 57.143 7.22 0.00 0.00 4.26
362 363 1.470890 GTACGTCTCTGCTCTTCTGCT 59.529 52.381 0.00 0.00 0.00 4.24
363 364 0.525761 ACGTCTCTGCTCTTCTGCTC 59.474 55.000 0.00 0.00 0.00 4.26
364 365 0.523125 CGTCTCTGCTCTTCTGCTCG 60.523 60.000 0.00 0.00 0.00 5.03
365 366 0.801836 GTCTCTGCTCTTCTGCTCGC 60.802 60.000 0.00 0.00 0.00 5.03
366 367 0.964860 TCTCTGCTCTTCTGCTCGCT 60.965 55.000 0.00 0.00 0.00 4.93
367 368 0.108709 CTCTGCTCTTCTGCTCGCTT 60.109 55.000 0.00 0.00 0.00 4.68
368 369 0.319728 TCTGCTCTTCTGCTCGCTTT 59.680 50.000 0.00 0.00 0.00 3.51
369 370 1.546029 TCTGCTCTTCTGCTCGCTTTA 59.454 47.619 0.00 0.00 0.00 1.85
370 371 1.658095 CTGCTCTTCTGCTCGCTTTAC 59.342 52.381 0.00 0.00 0.00 2.01
371 372 0.642800 GCTCTTCTGCTCGCTTTACG 59.357 55.000 0.00 0.00 45.62 3.18
372 373 1.983972 CTCTTCTGCTCGCTTTACGT 58.016 50.000 0.00 0.00 44.19 3.57
373 374 1.914700 CTCTTCTGCTCGCTTTACGTC 59.085 52.381 0.00 0.00 44.19 4.34
374 375 0.635731 CTTCTGCTCGCTTTACGTCG 59.364 55.000 0.00 0.00 44.19 5.12
375 376 0.239082 TTCTGCTCGCTTTACGTCGA 59.761 50.000 0.00 0.00 44.19 4.20
376 377 0.453950 TCTGCTCGCTTTACGTCGAC 60.454 55.000 5.18 5.18 44.19 4.20
377 378 0.728129 CTGCTCGCTTTACGTCGACA 60.728 55.000 17.16 0.00 44.19 4.35
378 379 0.318022 TGCTCGCTTTACGTCGACAA 60.318 50.000 17.16 0.00 44.19 3.18
379 380 0.989890 GCTCGCTTTACGTCGACAAT 59.010 50.000 17.16 5.40 44.19 2.71
380 381 1.389106 GCTCGCTTTACGTCGACAATT 59.611 47.619 17.16 1.21 44.19 2.32
381 382 2.159881 GCTCGCTTTACGTCGACAATTT 60.160 45.455 17.16 0.00 44.19 1.82
382 383 3.663493 GCTCGCTTTACGTCGACAATTTT 60.663 43.478 17.16 0.00 44.19 1.82
396 397 6.567512 GTCGACAATTTTTACAGTTACGTGAC 59.432 38.462 11.55 1.53 0.00 3.67
399 400 5.294060 ACAATTTTTACAGTTACGTGACGGT 59.706 36.000 19.06 19.06 0.00 4.83
404 405 5.530519 TTACAGTTACGTGACGGTAGTAG 57.469 43.478 19.39 0.00 33.05 2.57
423 424 1.290955 CTACCCTGTTCGTTCGGCA 59.709 57.895 0.00 0.00 0.00 5.69
498 499 4.205792 CGATTTTATAACGTGACGGGACTC 59.794 45.833 10.66 0.00 0.00 3.36
499 500 3.508744 TTTATAACGTGACGGGACTCC 57.491 47.619 10.66 0.00 0.00 3.85
506 507 0.106819 GTGACGGGACTCCCTAGCTA 60.107 60.000 12.62 0.00 42.67 3.32
590 596 1.997874 CCTTCTCTGGGAGGTGGGG 60.998 68.421 0.00 0.00 0.00 4.96
631 639 0.447801 GCCTACACGTCAAATGGCAG 59.552 55.000 8.94 0.00 40.04 4.85
632 640 1.943968 GCCTACACGTCAAATGGCAGA 60.944 52.381 8.94 0.00 40.04 4.26
680 688 2.613730 TGTCTCTAACACGAAGCTCG 57.386 50.000 0.00 4.36 46.93 5.03
710 722 3.758554 GACAACAATGGCCTGATTACACT 59.241 43.478 3.32 0.00 0.00 3.55
711 723 3.758554 ACAACAATGGCCTGATTACACTC 59.241 43.478 3.32 0.00 0.00 3.51
713 725 4.032960 ACAATGGCCTGATTACACTCAA 57.967 40.909 3.32 0.00 0.00 3.02
913 941 2.288666 CCAAATTAGGCAAGCTAGCGA 58.711 47.619 9.55 0.00 34.64 4.93
1351 1408 1.751437 GGACATGTTCCAGGTAAGGC 58.249 55.000 0.00 0.00 45.10 4.35
1352 1409 1.682087 GGACATGTTCCAGGTAAGGCC 60.682 57.143 0.00 0.00 45.10 5.19
1355 1412 1.205460 ATGTTCCAGGTAAGGCCGGT 61.205 55.000 1.90 0.00 43.70 5.28
1356 1413 1.376812 GTTCCAGGTAAGGCCGGTG 60.377 63.158 1.90 0.00 43.70 4.94
1360 1417 2.122056 AGGTAAGGCCGGTGACCT 59.878 61.111 13.32 13.32 43.70 3.85
1361 1418 1.988406 AGGTAAGGCCGGTGACCTC 60.988 63.158 13.32 0.00 37.83 3.85
1362 1419 2.582978 GTAAGGCCGGTGACCTCC 59.417 66.667 1.90 0.34 36.14 4.30
1369 1426 4.112341 CGGTGACCTCCGTCGACC 62.112 72.222 10.58 0.00 44.77 4.79
1370 1427 2.987547 GGTGACCTCCGTCGACCA 60.988 66.667 10.58 0.00 42.37 4.02
1371 1428 2.567049 GTGACCTCCGTCGACCAG 59.433 66.667 10.58 6.08 42.37 4.00
1372 1429 3.371063 TGACCTCCGTCGACCAGC 61.371 66.667 10.58 0.00 42.37 4.85
1373 1430 4.131088 GACCTCCGTCGACCAGCC 62.131 72.222 10.58 0.00 0.00 4.85
1375 1432 3.382832 CCTCCGTCGACCAGCCTT 61.383 66.667 10.58 0.00 0.00 4.35
1397 1466 2.693285 GATGCCGACGTTACGTGC 59.307 61.111 17.19 14.27 41.37 5.34
1398 1467 2.795389 GATGCCGACGTTACGTGCC 61.795 63.158 17.19 0.01 41.37 5.01
1401 1470 3.167945 CCGACGTTACGTGCCGAC 61.168 66.667 17.19 0.00 41.37 4.79
1403 1472 2.010286 CGACGTTACGTGCCGACAA 61.010 57.895 17.19 0.00 41.37 3.18
1404 1473 1.538946 CGACGTTACGTGCCGACAAA 61.539 55.000 17.19 0.00 41.37 2.83
1405 1474 0.160182 GACGTTACGTGCCGACAAAG 59.840 55.000 17.19 0.00 41.37 2.77
1406 1475 0.248990 ACGTTACGTGCCGACAAAGA 60.249 50.000 10.39 0.00 39.18 2.52
1407 1476 0.854062 CGTTACGTGCCGACAAAGAA 59.146 50.000 0.00 0.00 0.00 2.52
1408 1477 1.258458 CGTTACGTGCCGACAAAGAAA 59.742 47.619 0.00 0.00 0.00 2.52
1409 1478 2.658224 CGTTACGTGCCGACAAAGAAAG 60.658 50.000 0.00 0.00 0.00 2.62
1410 1479 0.863144 TACGTGCCGACAAAGAAAGC 59.137 50.000 0.00 0.00 0.00 3.51
1411 1480 0.814010 ACGTGCCGACAAAGAAAGCT 60.814 50.000 1.50 0.00 0.00 3.74
1412 1481 1.144969 CGTGCCGACAAAGAAAGCTA 58.855 50.000 0.00 0.00 0.00 3.32
1413 1482 1.126846 CGTGCCGACAAAGAAAGCTAG 59.873 52.381 0.00 0.00 0.00 3.42
1414 1483 1.135944 GTGCCGACAAAGAAAGCTAGC 60.136 52.381 6.62 6.62 0.00 3.42
1415 1484 1.270839 TGCCGACAAAGAAAGCTAGCT 60.271 47.619 12.68 12.68 0.00 3.32
1459 1528 2.672381 CAGCTTGTGTGGTTTGGTTTTG 59.328 45.455 0.00 0.00 0.00 2.44
1651 1720 3.541632 GACTTCTTCAACAACACCCTCA 58.458 45.455 0.00 0.00 0.00 3.86
1702 1771 8.562052 TCAAGGTAATCATCAATTCATTCATCG 58.438 33.333 0.00 0.00 0.00 3.84
1719 1788 0.528901 TCGCCACACGTGCCATATAC 60.529 55.000 17.22 0.00 44.19 1.47
1730 1803 4.045783 CGTGCCATATACATACGTGTCAA 58.954 43.478 0.00 0.00 39.77 3.18
1734 1807 5.694458 TGCCATATACATACGTGTCAATGAC 59.306 40.000 6.41 6.41 39.77 3.06
1735 1808 5.926542 GCCATATACATACGTGTCAATGACT 59.073 40.000 14.97 0.00 39.77 3.41
1760 1833 5.305812 CGTTGTCACGTTCATGATCTAAAC 58.694 41.667 0.00 0.00 41.84 2.01
1767 1844 6.029607 CACGTTCATGATCTAAACCCAAATG 58.970 40.000 0.00 0.00 0.00 2.32
1768 1845 5.943416 ACGTTCATGATCTAAACCCAAATGA 59.057 36.000 0.00 0.00 0.00 2.57
1769 1846 6.603201 ACGTTCATGATCTAAACCCAAATGAT 59.397 34.615 0.00 0.00 0.00 2.45
1770 1847 7.773224 ACGTTCATGATCTAAACCCAAATGATA 59.227 33.333 0.00 0.00 0.00 2.15
1781 1858 7.814264 AAACCCAAATGATATGATGTCTCTC 57.186 36.000 0.00 0.00 0.00 3.20
1782 1859 6.760440 ACCCAAATGATATGATGTCTCTCT 57.240 37.500 0.00 0.00 0.00 3.10
1785 1862 6.654161 CCCAAATGATATGATGTCTCTCTTCC 59.346 42.308 0.00 0.00 0.00 3.46
1786 1863 7.451732 CCAAATGATATGATGTCTCTCTTCCT 58.548 38.462 0.00 0.00 0.00 3.36
1797 1875 3.942748 GTCTCTCTTCCTCTACGTGTGAT 59.057 47.826 0.00 0.00 0.00 3.06
1798 1876 3.942115 TCTCTCTTCCTCTACGTGTGATG 59.058 47.826 0.00 0.00 0.00 3.07
1969 2047 1.215382 CCTGAAGACCATCGACGCA 59.785 57.895 0.00 0.00 0.00 5.24
2032 2110 3.482783 GCGCACGAGAGCAAGGAC 61.483 66.667 0.30 0.00 40.58 3.85
2302 2380 3.474570 GCCACGCAGAGGAGGGAT 61.475 66.667 0.00 0.00 42.26 3.85
2303 2381 2.503061 CCACGCAGAGGAGGGATG 59.497 66.667 0.00 0.00 42.26 3.51
2305 2383 2.765807 ACGCAGAGGAGGGATGGG 60.766 66.667 0.00 0.00 0.00 4.00
2515 5201 3.123620 CTCAGCAAGCAGGACGCC 61.124 66.667 0.00 0.00 44.04 5.68
2592 5278 4.283978 TGGTACTCATCCTTACGTCCAAAA 59.716 41.667 0.00 0.00 0.00 2.44
2658 5350 3.681593 TGTTTGGTCCCATTGTAGCTAC 58.318 45.455 17.30 17.30 0.00 3.58
2699 5397 5.032846 AGAGAAATGTTCAGATACCTCCCA 58.967 41.667 0.00 0.00 0.00 4.37
2722 5421 5.911280 CACTGAGTGTAGCAATTTTGACTTG 59.089 40.000 4.01 0.00 0.00 3.16
2726 5425 5.510671 AGTGTAGCAATTTTGACTTGTTCG 58.489 37.500 0.00 0.00 0.00 3.95
2734 5433 0.179094 TTGACTTGTTCGACGGTGCT 60.179 50.000 0.00 0.00 0.00 4.40
2762 5470 7.542477 TCTGAGAAGTTTTAATTAGCTGACTCG 59.458 37.037 0.00 0.00 0.00 4.18
2817 5832 4.504858 AGTGATCCGAGTACACAATTTCC 58.495 43.478 0.00 0.00 37.05 3.13
2890 5905 0.473326 GAGCAGGGCCATCTCTGAAT 59.527 55.000 6.18 0.00 33.11 2.57
2893 5908 1.680207 GCAGGGCCATCTCTGAATTTC 59.320 52.381 6.18 0.00 33.11 2.17
2894 5909 2.947243 GCAGGGCCATCTCTGAATTTCA 60.947 50.000 6.18 0.00 33.11 2.69
2895 5910 3.359033 CAGGGCCATCTCTGAATTTCAA 58.641 45.455 6.18 0.00 33.11 2.69
2933 5952 3.692791 GTGACCACCAACTTTCTTCAC 57.307 47.619 0.00 0.00 0.00 3.18
2934 5953 3.279434 GTGACCACCAACTTTCTTCACT 58.721 45.455 0.00 0.00 31.25 3.41
2942 5961 3.002348 CCAACTTTCTTCACTTGTCCGAC 59.998 47.826 0.00 0.00 0.00 4.79
2946 5965 0.103390 TCTTCACTTGTCCGACGCAA 59.897 50.000 0.00 0.00 0.00 4.85
2952 5971 0.591170 CTTGTCCGACGCAACCAAAT 59.409 50.000 0.00 0.00 0.00 2.32
2969 5988 2.497107 AATGTGTGCAAGTGCTCAAC 57.503 45.000 9.43 3.66 44.64 3.18
2970 5989 1.391577 ATGTGTGCAAGTGCTCAACA 58.608 45.000 9.43 8.69 44.64 3.33
2981 6000 2.797491 GTGCTCAACACTTGGTTTCAC 58.203 47.619 0.00 0.00 46.41 3.18
2982 6001 1.748493 TGCTCAACACTTGGTTTCACC 59.252 47.619 0.00 0.00 37.72 4.02
2983 6002 2.024414 GCTCAACACTTGGTTTCACCT 58.976 47.619 0.00 0.00 39.58 4.00
2984 6003 2.427095 GCTCAACACTTGGTTTCACCTT 59.573 45.455 0.00 0.00 39.58 3.50
2985 6004 3.734902 GCTCAACACTTGGTTTCACCTTG 60.735 47.826 0.00 0.00 39.58 3.61
2986 6005 3.426615 TCAACACTTGGTTTCACCTTGT 58.573 40.909 0.00 0.00 39.58 3.16
2987 6006 4.590918 TCAACACTTGGTTTCACCTTGTA 58.409 39.130 0.00 0.00 39.58 2.41
2988 6007 4.396790 TCAACACTTGGTTTCACCTTGTAC 59.603 41.667 0.00 0.00 39.58 2.90
2989 6008 3.958018 ACACTTGGTTTCACCTTGTACA 58.042 40.909 0.00 0.00 39.58 2.90
2990 6009 4.532834 ACACTTGGTTTCACCTTGTACAT 58.467 39.130 0.00 0.00 39.58 2.29
2991 6010 4.578928 ACACTTGGTTTCACCTTGTACATC 59.421 41.667 0.00 0.00 39.58 3.06
2992 6011 3.813166 ACTTGGTTTCACCTTGTACATCG 59.187 43.478 0.00 0.00 39.58 3.84
2993 6012 2.147958 TGGTTTCACCTTGTACATCGC 58.852 47.619 0.00 0.00 39.58 4.58
2994 6013 1.467342 GGTTTCACCTTGTACATCGCC 59.533 52.381 0.00 0.00 34.73 5.54
2995 6014 2.423577 GTTTCACCTTGTACATCGCCT 58.576 47.619 0.00 0.00 0.00 5.52
2996 6015 2.380084 TTCACCTTGTACATCGCCTC 57.620 50.000 0.00 0.00 0.00 4.70
2997 6016 1.262417 TCACCTTGTACATCGCCTCA 58.738 50.000 0.00 0.00 0.00 3.86
2998 6017 1.831106 TCACCTTGTACATCGCCTCAT 59.169 47.619 0.00 0.00 0.00 2.90
2999 6018 3.028130 TCACCTTGTACATCGCCTCATA 58.972 45.455 0.00 0.00 0.00 2.15
3000 6019 3.068165 TCACCTTGTACATCGCCTCATAG 59.932 47.826 0.00 0.00 0.00 2.23
3001 6020 2.365617 ACCTTGTACATCGCCTCATAGG 59.634 50.000 0.00 0.00 38.80 2.57
3002 6021 2.289072 CCTTGTACATCGCCTCATAGGG 60.289 54.545 0.00 0.00 35.37 3.53
3003 6022 2.082140 TGTACATCGCCTCATAGGGT 57.918 50.000 0.00 0.00 35.37 4.34
3004 6023 1.686587 TGTACATCGCCTCATAGGGTG 59.313 52.381 0.00 0.00 35.37 4.61
3005 6024 0.679505 TACATCGCCTCATAGGGTGC 59.320 55.000 0.00 0.00 35.37 5.01
3010 6029 3.516578 GCCTCATAGGGTGCGATAC 57.483 57.895 0.00 0.00 35.37 2.24
3020 6039 2.075761 GTGCGATACCACGAACACC 58.924 57.895 0.00 0.00 41.00 4.16
3021 6040 1.079681 TGCGATACCACGAACACCC 60.080 57.895 0.00 0.00 35.09 4.61
3022 6041 1.217244 GCGATACCACGAACACCCT 59.783 57.895 0.00 0.00 35.09 4.34
3023 6042 0.390735 GCGATACCACGAACACCCTT 60.391 55.000 0.00 0.00 35.09 3.95
3024 6043 1.135024 GCGATACCACGAACACCCTTA 60.135 52.381 0.00 0.00 35.09 2.69
3025 6044 2.674747 GCGATACCACGAACACCCTTAA 60.675 50.000 0.00 0.00 35.09 1.85
3049 6068 4.208632 GGTGCACGATTCAGGAGG 57.791 61.111 11.45 0.00 0.00 4.30
3062 6081 2.325484 TCAGGAGGTAAACTGCAGTGA 58.675 47.619 22.49 9.06 40.51 3.41
3082 6106 1.846007 ACACTGCTTCACCCAAAACA 58.154 45.000 0.00 0.00 0.00 2.83
3086 6110 1.002468 CTGCTTCACCCAAAACAGTCG 60.002 52.381 0.00 0.00 0.00 4.18
3091 6115 0.817634 CACCCAAAACAGTCGAGGCA 60.818 55.000 0.00 0.00 0.00 4.75
3093 6117 1.576421 CCAAAACAGTCGAGGCAGC 59.424 57.895 0.00 0.00 0.00 5.25
3113 6137 1.208293 CCCCTTGCTCTTCACTAGACC 59.792 57.143 0.00 0.00 0.00 3.85
3114 6138 1.902508 CCCTTGCTCTTCACTAGACCA 59.097 52.381 0.00 0.00 0.00 4.02
3115 6139 2.354203 CCCTTGCTCTTCACTAGACCAC 60.354 54.545 0.00 0.00 0.00 4.16
3116 6140 2.354203 CCTTGCTCTTCACTAGACCACC 60.354 54.545 0.00 0.00 0.00 4.61
3124 6148 0.745845 CACTAGACCACCTGCCATGC 60.746 60.000 0.00 0.00 0.00 4.06
3131 6155 2.601367 ACCTGCCATGCCAACCAC 60.601 61.111 0.00 0.00 0.00 4.16
3136 6160 1.604593 GCCATGCCAACCACAGTCT 60.605 57.895 0.00 0.00 0.00 3.24
3141 6165 2.363306 TGCCAACCACAGTCTGATTT 57.637 45.000 6.91 0.00 0.00 2.17
3142 6166 3.500448 TGCCAACCACAGTCTGATTTA 57.500 42.857 6.91 0.00 0.00 1.40
3158 6194 7.768120 AGTCTGATTTAAGTAGAGCATGAAAGG 59.232 37.037 0.00 0.00 0.00 3.11
3161 6197 9.383519 CTGATTTAAGTAGAGCATGAAAGGTTA 57.616 33.333 0.00 0.00 0.00 2.85
3167 6203 6.109359 AGTAGAGCATGAAAGGTTATGTGTC 58.891 40.000 0.00 0.00 0.00 3.67
3189 6232 1.094785 AACGAGCATGCCATAACCAC 58.905 50.000 15.66 0.00 0.00 4.16
3191 6234 0.378257 CGAGCATGCCATAACCACAC 59.622 55.000 15.66 0.00 0.00 3.82
3192 6235 1.755179 GAGCATGCCATAACCACACT 58.245 50.000 15.66 0.00 0.00 3.55
3193 6236 1.402968 GAGCATGCCATAACCACACTG 59.597 52.381 15.66 0.00 0.00 3.66
3232 6296 4.979815 TGTTCAGTATGTACAGTGTGTTCG 59.020 41.667 5.88 0.00 41.59 3.95
3254 6318 0.803117 GCCCTTCTTACTTTCGCCAC 59.197 55.000 0.00 0.00 0.00 5.01
3262 6326 0.470766 TACTTTCGCCACCACCTTGT 59.529 50.000 0.00 0.00 0.00 3.16
3270 6334 1.402787 CCACCACCTTGTGCTCTTTT 58.597 50.000 0.00 0.00 34.85 2.27
3271 6335 2.582052 CCACCACCTTGTGCTCTTTTA 58.418 47.619 0.00 0.00 34.85 1.52
3272 6336 2.293399 CCACCACCTTGTGCTCTTTTAC 59.707 50.000 0.00 0.00 34.85 2.01
3273 6337 3.214328 CACCACCTTGTGCTCTTTTACT 58.786 45.455 0.00 0.00 31.34 2.24
3274 6338 3.251004 CACCACCTTGTGCTCTTTTACTC 59.749 47.826 0.00 0.00 31.34 2.59
3275 6339 3.136626 ACCACCTTGTGCTCTTTTACTCT 59.863 43.478 0.00 0.00 31.34 3.24
3276 6340 4.137543 CCACCTTGTGCTCTTTTACTCTT 58.862 43.478 0.00 0.00 31.34 2.85
3277 6341 4.580580 CCACCTTGTGCTCTTTTACTCTTT 59.419 41.667 0.00 0.00 31.34 2.52
3283 6347 5.189928 TGTGCTCTTTTACTCTTTGTCCAA 58.810 37.500 0.00 0.00 0.00 3.53
3286 6350 7.665559 TGTGCTCTTTTACTCTTTGTCCAATAT 59.334 33.333 0.00 0.00 0.00 1.28
3287 6351 8.178313 GTGCTCTTTTACTCTTTGTCCAATATC 58.822 37.037 0.00 0.00 0.00 1.63
3290 6354 8.842358 TCTTTTACTCTTTGTCCAATATCGTT 57.158 30.769 0.00 0.00 0.00 3.85
3299 6363 3.646162 TGTCCAATATCGTTATCAGCCCT 59.354 43.478 0.00 0.00 0.00 5.19
3413 6477 2.040544 CCGGTGGTCTCCATTGTGC 61.041 63.158 0.00 0.00 35.28 4.57
3425 6489 4.118480 TTGTGCGCGACAAAGAGT 57.882 50.000 12.10 0.00 41.80 3.24
3463 6527 0.323725 ATGCCCACCACTGAACCATC 60.324 55.000 0.00 0.00 0.00 3.51
3464 6528 1.074775 GCCCACCACTGAACCATCA 59.925 57.895 0.00 0.00 0.00 3.07
3465 6529 1.244019 GCCCACCACTGAACCATCAC 61.244 60.000 0.00 0.00 0.00 3.06
3466 6530 0.609131 CCCACCACTGAACCATCACC 60.609 60.000 0.00 0.00 0.00 4.02
3467 6531 0.110295 CCACCACTGAACCATCACCA 59.890 55.000 0.00 0.00 0.00 4.17
3468 6532 1.527034 CACCACTGAACCATCACCAG 58.473 55.000 0.00 0.00 0.00 4.00
3469 6533 1.072173 CACCACTGAACCATCACCAGA 59.928 52.381 0.00 0.00 0.00 3.86
3470 6534 1.349026 ACCACTGAACCATCACCAGAG 59.651 52.381 0.00 0.00 0.00 3.35
3471 6535 1.339438 CCACTGAACCATCACCAGAGG 60.339 57.143 0.00 0.00 33.62 3.69
3478 6542 2.600439 CATCACCAGAGGGAGCTGA 58.400 57.895 0.00 0.00 38.14 4.26
3479 6543 0.907486 CATCACCAGAGGGAGCTGAA 59.093 55.000 0.00 0.00 38.14 3.02
3499 6563 4.141505 TGAACCAGTGATTCTTCAGTCCAA 60.142 41.667 0.00 0.00 33.07 3.53
3500 6564 3.744660 ACCAGTGATTCTTCAGTCCAAC 58.255 45.455 0.00 0.00 33.07 3.77
3505 6569 3.675698 GTGATTCTTCAGTCCAACTCGAC 59.324 47.826 0.00 0.00 30.85 4.20
3533 6597 3.392285 TCTCAACATCCCTGGTCATATGG 59.608 47.826 2.13 0.00 0.00 2.74
3543 6607 2.941064 CTGGTCATATGGTTGCTCACAG 59.059 50.000 2.13 0.00 0.00 3.66
3560 6624 2.047061 ACAGCTCTGTCCAAGTACCAA 58.953 47.619 0.00 0.00 40.24 3.67
3562 6626 2.300152 CAGCTCTGTCCAAGTACCAAGA 59.700 50.000 0.00 0.00 0.00 3.02
3589 6653 2.229792 TGCTAAACTTGACAGCTTGGG 58.770 47.619 0.00 0.00 36.26 4.12
3599 6663 2.032681 AGCTTGGGCACGACCTTC 59.967 61.111 0.00 0.00 41.70 3.46
3600 6664 2.032681 GCTTGGGCACGACCTTCT 59.967 61.111 0.00 0.00 39.10 2.85
3601 6665 2.035442 GCTTGGGCACGACCTTCTC 61.035 63.158 0.00 0.00 39.10 2.87
3602 6666 1.674057 CTTGGGCACGACCTTCTCT 59.326 57.895 0.00 0.00 39.10 3.10
3603 6667 0.035458 CTTGGGCACGACCTTCTCTT 59.965 55.000 0.00 0.00 39.10 2.85
3604 6668 0.034896 TTGGGCACGACCTTCTCTTC 59.965 55.000 0.00 0.00 39.10 2.87
3605 6669 1.446272 GGGCACGACCTTCTCTTCG 60.446 63.158 0.00 0.00 41.14 3.79
3610 6674 2.418983 ACGACCTTCTCTTCGTGAAC 57.581 50.000 0.00 0.00 46.41 3.18
3611 6675 1.679680 ACGACCTTCTCTTCGTGAACA 59.320 47.619 0.00 0.00 46.41 3.18
3612 6676 2.100252 ACGACCTTCTCTTCGTGAACAA 59.900 45.455 0.00 0.00 46.41 2.83
3613 6677 2.471743 CGACCTTCTCTTCGTGAACAAC 59.528 50.000 0.00 0.00 0.00 3.32
3614 6678 3.718815 GACCTTCTCTTCGTGAACAACT 58.281 45.455 0.00 0.00 0.00 3.16
3615 6679 4.120589 GACCTTCTCTTCGTGAACAACTT 58.879 43.478 0.00 0.00 0.00 2.66
3616 6680 4.514401 ACCTTCTCTTCGTGAACAACTTT 58.486 39.130 0.00 0.00 0.00 2.66
3617 6681 4.941873 ACCTTCTCTTCGTGAACAACTTTT 59.058 37.500 0.00 0.00 0.00 2.27
3618 6682 5.064834 ACCTTCTCTTCGTGAACAACTTTTC 59.935 40.000 0.00 0.00 0.00 2.29
3619 6683 5.294552 CCTTCTCTTCGTGAACAACTTTTCT 59.705 40.000 0.00 0.00 0.00 2.52
3620 6684 5.718649 TCTCTTCGTGAACAACTTTTCTG 57.281 39.130 0.00 0.00 0.00 3.02
3621 6685 5.416083 TCTCTTCGTGAACAACTTTTCTGA 58.584 37.500 0.00 0.00 0.00 3.27
3622 6686 5.872617 TCTCTTCGTGAACAACTTTTCTGAA 59.127 36.000 0.00 0.00 0.00 3.02
3623 6687 6.370442 TCTCTTCGTGAACAACTTTTCTGAAA 59.630 34.615 0.00 0.00 0.00 2.69
3624 6688 6.904498 TCTTCGTGAACAACTTTTCTGAAAA 58.096 32.000 14.31 14.31 0.00 2.29
3625 6689 7.364200 TCTTCGTGAACAACTTTTCTGAAAAA 58.636 30.769 15.67 0.00 33.42 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.654793 TTCGCATGCTAAAAGTTTGTTTTT 57.345 29.167 17.13 0.00 34.78 1.94
1 2 5.276820 GCTTCGCATGCTAAAAGTTTGTTTT 60.277 36.000 17.13 0.00 0.00 2.43
2 3 4.209080 GCTTCGCATGCTAAAAGTTTGTTT 59.791 37.500 17.13 0.00 0.00 2.83
3 4 3.735746 GCTTCGCATGCTAAAAGTTTGTT 59.264 39.130 17.13 0.00 0.00 2.83
4 5 3.004734 AGCTTCGCATGCTAAAAGTTTGT 59.995 39.130 17.13 1.63 39.21 2.83
5 6 3.568538 AGCTTCGCATGCTAAAAGTTTG 58.431 40.909 17.13 0.00 39.21 2.93
6 7 3.503748 AGAGCTTCGCATGCTAAAAGTTT 59.496 39.130 17.13 9.06 41.30 2.66
7 8 3.077359 AGAGCTTCGCATGCTAAAAGTT 58.923 40.909 17.13 13.74 41.30 2.66
8 9 2.704572 AGAGCTTCGCATGCTAAAAGT 58.295 42.857 17.13 7.43 41.30 2.66
9 10 3.754188 AAGAGCTTCGCATGCTAAAAG 57.246 42.857 17.13 16.36 41.30 2.27
10 11 4.503741 AAAAGAGCTTCGCATGCTAAAA 57.496 36.364 17.13 6.50 41.30 1.52
11 12 4.503741 AAAAAGAGCTTCGCATGCTAAA 57.496 36.364 17.13 9.07 41.30 1.85
12 13 5.621197 TTAAAAAGAGCTTCGCATGCTAA 57.379 34.783 17.13 10.54 41.30 3.09
13 14 4.437390 GCTTAAAAAGAGCTTCGCATGCTA 60.437 41.667 17.13 0.72 41.30 3.49
14 15 3.671702 GCTTAAAAAGAGCTTCGCATGCT 60.672 43.478 17.13 0.00 44.24 3.79
15 16 2.595977 GCTTAAAAAGAGCTTCGCATGC 59.404 45.455 7.91 7.91 37.18 4.06
16 17 2.842485 CGCTTAAAAAGAGCTTCGCATG 59.158 45.455 0.00 0.00 37.99 4.06
17 18 3.122937 CGCTTAAAAAGAGCTTCGCAT 57.877 42.857 0.00 0.00 37.99 4.73
18 19 2.594529 CGCTTAAAAAGAGCTTCGCA 57.405 45.000 0.00 0.00 37.99 5.10
25 26 3.896648 TCAACAGGCGCTTAAAAAGAG 57.103 42.857 7.64 0.00 0.00 2.85
26 27 3.880490 TCTTCAACAGGCGCTTAAAAAGA 59.120 39.130 7.64 7.42 0.00 2.52
27 28 4.223320 TCTTCAACAGGCGCTTAAAAAG 57.777 40.909 7.64 5.06 0.00 2.27
28 29 4.545610 CATCTTCAACAGGCGCTTAAAAA 58.454 39.130 7.64 0.00 0.00 1.94
29 30 3.611530 GCATCTTCAACAGGCGCTTAAAA 60.612 43.478 7.64 0.00 0.00 1.52
30 31 2.095263 GCATCTTCAACAGGCGCTTAAA 60.095 45.455 7.64 0.00 0.00 1.52
31 32 1.468520 GCATCTTCAACAGGCGCTTAA 59.531 47.619 7.64 0.00 0.00 1.85
32 33 1.086696 GCATCTTCAACAGGCGCTTA 58.913 50.000 7.64 0.00 0.00 3.09
33 34 0.607489 AGCATCTTCAACAGGCGCTT 60.607 50.000 7.64 0.00 28.90 4.68
34 35 1.002868 AGCATCTTCAACAGGCGCT 60.003 52.632 7.64 0.00 0.00 5.92
35 36 1.427020 GAGCATCTTCAACAGGCGC 59.573 57.895 0.00 0.00 0.00 6.53
43 44 8.133009 AAGGATAGCTACCTTAGAGCATCTTCA 61.133 40.741 19.79 0.00 44.62 3.02
44 45 6.210584 AAGGATAGCTACCTTAGAGCATCTTC 59.789 42.308 19.79 0.51 44.62 2.87
45 46 6.081356 AAGGATAGCTACCTTAGAGCATCTT 58.919 40.000 19.79 0.00 44.62 2.40
46 47 5.650283 AAGGATAGCTACCTTAGAGCATCT 58.350 41.667 19.79 0.79 44.62 2.90
47 48 5.714806 AGAAGGATAGCTACCTTAGAGCATC 59.285 44.000 20.69 11.24 46.14 3.91
48 49 5.650283 AGAAGGATAGCTACCTTAGAGCAT 58.350 41.667 20.69 4.63 46.14 3.79
49 50 5.068215 AGAAGGATAGCTACCTTAGAGCA 57.932 43.478 20.69 0.00 46.14 4.26
50 51 4.155280 CGAGAAGGATAGCTACCTTAGAGC 59.845 50.000 20.69 12.31 46.14 4.09
51 52 5.553123 TCGAGAAGGATAGCTACCTTAGAG 58.447 45.833 20.69 15.82 46.14 2.43
52 53 5.307456 TCTCGAGAAGGATAGCTACCTTAGA 59.693 44.000 14.01 17.41 46.14 2.10
53 54 5.553123 TCTCGAGAAGGATAGCTACCTTAG 58.447 45.833 14.01 16.04 46.14 2.18
54 55 5.563876 TCTCGAGAAGGATAGCTACCTTA 57.436 43.478 14.01 9.75 46.14 2.69
56 57 4.394729 CTTCTCGAGAAGGATAGCTACCT 58.605 47.826 36.99 2.06 45.79 3.08
57 58 4.759516 CTTCTCGAGAAGGATAGCTACC 57.240 50.000 36.99 0.00 45.79 3.18
68 69 0.613777 GGGGCTTTCCTTCTCGAGAA 59.386 55.000 25.57 25.57 35.33 2.87
69 70 0.252284 AGGGGCTTTCCTTCTCGAGA 60.252 55.000 12.08 12.08 32.13 4.04
70 71 1.486211 TAGGGGCTTTCCTTCTCGAG 58.514 55.000 5.93 5.93 38.30 4.04
71 72 1.553704 GTTAGGGGCTTTCCTTCTCGA 59.446 52.381 0.00 0.00 38.30 4.04
72 73 1.278127 TGTTAGGGGCTTTCCTTCTCG 59.722 52.381 0.00 0.00 38.30 4.04
73 74 2.618302 GGTGTTAGGGGCTTTCCTTCTC 60.618 54.545 0.00 0.00 38.30 2.87
74 75 1.354705 GGTGTTAGGGGCTTTCCTTCT 59.645 52.381 0.00 0.00 38.30 2.85
75 76 1.074889 TGGTGTTAGGGGCTTTCCTTC 59.925 52.381 0.00 0.00 38.30 3.46
76 77 1.075536 CTGGTGTTAGGGGCTTTCCTT 59.924 52.381 0.00 0.00 38.30 3.36
77 78 0.698818 CTGGTGTTAGGGGCTTTCCT 59.301 55.000 0.00 0.00 40.79 3.36
78 79 0.965866 GCTGGTGTTAGGGGCTTTCC 60.966 60.000 0.00 0.00 0.00 3.13
79 80 0.251165 TGCTGGTGTTAGGGGCTTTC 60.251 55.000 0.00 0.00 0.00 2.62
80 81 0.409484 ATGCTGGTGTTAGGGGCTTT 59.591 50.000 0.00 0.00 0.00 3.51
81 82 0.323725 CATGCTGGTGTTAGGGGCTT 60.324 55.000 0.00 0.00 0.00 4.35
82 83 1.304282 CATGCTGGTGTTAGGGGCT 59.696 57.895 0.00 0.00 0.00 5.19
83 84 2.418083 GCATGCTGGTGTTAGGGGC 61.418 63.158 11.37 0.00 0.00 5.80
84 85 0.611618 TTGCATGCTGGTGTTAGGGG 60.612 55.000 20.33 0.00 0.00 4.79
85 86 1.255882 TTTGCATGCTGGTGTTAGGG 58.744 50.000 20.33 0.00 0.00 3.53
86 87 2.035704 TGTTTTGCATGCTGGTGTTAGG 59.964 45.455 20.33 0.00 0.00 2.69
87 88 3.367992 TGTTTTGCATGCTGGTGTTAG 57.632 42.857 20.33 0.00 0.00 2.34
88 89 3.320256 TGATGTTTTGCATGCTGGTGTTA 59.680 39.130 20.33 0.00 38.06 2.41
89 90 2.102757 TGATGTTTTGCATGCTGGTGTT 59.897 40.909 20.33 0.00 38.06 3.32
90 91 1.687660 TGATGTTTTGCATGCTGGTGT 59.312 42.857 20.33 0.28 38.06 4.16
91 92 2.029739 TCTGATGTTTTGCATGCTGGTG 60.030 45.455 20.33 0.00 38.06 4.17
92 93 2.241160 TCTGATGTTTTGCATGCTGGT 58.759 42.857 20.33 0.00 38.06 4.00
93 94 3.520290 ATCTGATGTTTTGCATGCTGG 57.480 42.857 20.33 0.00 38.06 4.85
94 95 8.637281 TTAATTATCTGATGTTTTGCATGCTG 57.363 30.769 20.33 0.00 38.06 4.41
95 96 9.090692 GTTTAATTATCTGATGTTTTGCATGCT 57.909 29.630 20.33 0.00 38.06 3.79
96 97 8.330302 GGTTTAATTATCTGATGTTTTGCATGC 58.670 33.333 11.82 11.82 38.06 4.06
97 98 9.590451 AGGTTTAATTATCTGATGTTTTGCATG 57.410 29.630 0.00 0.00 38.06 4.06
98 99 9.590451 CAGGTTTAATTATCTGATGTTTTGCAT 57.410 29.630 0.00 0.00 41.24 3.96
99 100 8.584157 ACAGGTTTAATTATCTGATGTTTTGCA 58.416 29.630 14.12 0.00 0.00 4.08
100 101 8.986477 ACAGGTTTAATTATCTGATGTTTTGC 57.014 30.769 14.12 0.00 0.00 3.68
105 106 9.261180 CGACATACAGGTTTAATTATCTGATGT 57.739 33.333 14.12 15.71 34.28 3.06
106 107 9.261180 ACGACATACAGGTTTAATTATCTGATG 57.739 33.333 14.12 13.85 0.00 3.07
107 108 9.477484 GACGACATACAGGTTTAATTATCTGAT 57.523 33.333 14.12 0.00 0.00 2.90
108 109 7.646526 CGACGACATACAGGTTTAATTATCTGA 59.353 37.037 14.12 0.00 0.00 3.27
109 110 7.646526 TCGACGACATACAGGTTTAATTATCTG 59.353 37.037 0.00 8.52 0.00 2.90
110 111 7.709947 TCGACGACATACAGGTTTAATTATCT 58.290 34.615 0.00 0.00 0.00 1.98
111 112 7.919313 TCGACGACATACAGGTTTAATTATC 57.081 36.000 0.00 0.00 0.00 1.75
112 113 8.761497 CATTCGACGACATACAGGTTTAATTAT 58.239 33.333 0.00 0.00 0.00 1.28
113 114 7.254185 GCATTCGACGACATACAGGTTTAATTA 60.254 37.037 0.00 0.00 0.00 1.40
114 115 6.456449 GCATTCGACGACATACAGGTTTAATT 60.456 38.462 0.00 0.00 0.00 1.40
115 116 5.006358 GCATTCGACGACATACAGGTTTAAT 59.994 40.000 0.00 0.00 0.00 1.40
116 117 4.327898 GCATTCGACGACATACAGGTTTAA 59.672 41.667 0.00 0.00 0.00 1.52
117 118 3.861113 GCATTCGACGACATACAGGTTTA 59.139 43.478 0.00 0.00 0.00 2.01
118 119 2.671396 GCATTCGACGACATACAGGTTT 59.329 45.455 0.00 0.00 0.00 3.27
119 120 2.094182 AGCATTCGACGACATACAGGTT 60.094 45.455 0.00 0.00 0.00 3.50
120 121 1.476891 AGCATTCGACGACATACAGGT 59.523 47.619 0.00 0.00 0.00 4.00
121 122 2.209838 AGCATTCGACGACATACAGG 57.790 50.000 0.00 0.00 0.00 4.00
122 123 3.179048 TCAAGCATTCGACGACATACAG 58.821 45.455 0.00 0.00 0.00 2.74
123 124 3.119637 TCTCAAGCATTCGACGACATACA 60.120 43.478 0.00 0.00 0.00 2.29
124 125 3.240861 GTCTCAAGCATTCGACGACATAC 59.759 47.826 0.00 0.00 0.00 2.39
125 126 3.128764 AGTCTCAAGCATTCGACGACATA 59.871 43.478 0.00 0.00 32.57 2.29
126 127 2.094494 AGTCTCAAGCATTCGACGACAT 60.094 45.455 0.00 0.00 32.57 3.06
127 128 1.269723 AGTCTCAAGCATTCGACGACA 59.730 47.619 0.00 0.00 32.57 4.35
128 129 1.914700 GAGTCTCAAGCATTCGACGAC 59.085 52.381 0.00 0.00 32.57 4.34
129 130 1.135373 GGAGTCTCAAGCATTCGACGA 60.135 52.381 1.47 0.00 32.57 4.20
130 131 1.135257 AGGAGTCTCAAGCATTCGACG 60.135 52.381 1.47 0.00 32.57 5.12
131 132 2.266554 CAGGAGTCTCAAGCATTCGAC 58.733 52.381 1.47 0.00 0.00 4.20
132 133 1.205655 CCAGGAGTCTCAAGCATTCGA 59.794 52.381 1.47 0.00 0.00 3.71
133 134 1.205655 TCCAGGAGTCTCAAGCATTCG 59.794 52.381 1.47 0.00 0.00 3.34
134 135 2.235898 AGTCCAGGAGTCTCAAGCATTC 59.764 50.000 1.47 0.00 0.00 2.67
135 136 2.235898 GAGTCCAGGAGTCTCAAGCATT 59.764 50.000 16.35 0.00 0.00 3.56
136 137 1.830477 GAGTCCAGGAGTCTCAAGCAT 59.170 52.381 16.35 0.00 0.00 3.79
137 138 1.261480 GAGTCCAGGAGTCTCAAGCA 58.739 55.000 16.35 0.00 0.00 3.91
138 139 0.534873 GGAGTCCAGGAGTCTCAAGC 59.465 60.000 21.77 3.33 33.00 4.01
139 140 1.824230 CAGGAGTCCAGGAGTCTCAAG 59.176 57.143 21.77 7.59 33.00 3.02
140 141 1.551099 CCAGGAGTCCAGGAGTCTCAA 60.551 57.143 21.77 0.00 31.24 3.02
141 142 0.040351 CCAGGAGTCCAGGAGTCTCA 59.960 60.000 21.77 0.00 31.24 3.27
142 143 0.040499 ACCAGGAGTCCAGGAGTCTC 59.960 60.000 26.47 10.87 34.08 3.36
143 144 0.040499 GACCAGGAGTCCAGGAGTCT 59.960 60.000 26.47 4.30 39.84 3.24
144 145 0.251832 TGACCAGGAGTCCAGGAGTC 60.252 60.000 26.47 15.42 45.68 3.36
145 146 0.543174 GTGACCAGGAGTCCAGGAGT 60.543 60.000 26.47 10.15 45.68 3.85
146 147 0.252012 AGTGACCAGGAGTCCAGGAG 60.252 60.000 26.47 6.90 45.68 3.69
147 148 0.251832 GAGTGACCAGGAGTCCAGGA 60.252 60.000 26.47 2.57 45.68 3.86
148 149 1.599606 CGAGTGACCAGGAGTCCAGG 61.600 65.000 18.76 18.76 45.68 4.45
149 150 1.886585 CGAGTGACCAGGAGTCCAG 59.113 63.158 12.86 2.60 45.68 3.86
150 151 2.276116 GCGAGTGACCAGGAGTCCA 61.276 63.158 12.86 0.00 45.68 4.02
151 152 1.979693 AGCGAGTGACCAGGAGTCC 60.980 63.158 0.00 0.00 45.68 3.85
152 153 1.214062 CAGCGAGTGACCAGGAGTC 59.786 63.158 0.00 0.00 46.51 3.36
153 154 0.251209 TACAGCGAGTGACCAGGAGT 60.251 55.000 0.00 0.00 0.00 3.85
154 155 0.171455 GTACAGCGAGTGACCAGGAG 59.829 60.000 0.00 0.00 0.00 3.69
155 156 0.251209 AGTACAGCGAGTGACCAGGA 60.251 55.000 0.00 0.00 0.00 3.86
156 157 0.171455 GAGTACAGCGAGTGACCAGG 59.829 60.000 0.00 0.00 0.00 4.45
157 158 1.135546 CAGAGTACAGCGAGTGACCAG 60.136 57.143 0.00 0.00 0.00 4.00
158 159 0.881796 CAGAGTACAGCGAGTGACCA 59.118 55.000 0.00 0.00 0.00 4.02
159 160 0.882474 ACAGAGTACAGCGAGTGACC 59.118 55.000 0.00 0.00 0.00 4.02
160 161 2.476519 GCTACAGAGTACAGCGAGTGAC 60.477 54.545 0.00 0.00 0.00 3.67
161 162 1.738350 GCTACAGAGTACAGCGAGTGA 59.262 52.381 0.00 0.00 0.00 3.41
162 163 2.181426 GCTACAGAGTACAGCGAGTG 57.819 55.000 0.00 0.00 0.00 3.51
167 168 1.671845 AGCTACGCTACAGAGTACAGC 59.328 52.381 0.00 1.06 36.99 4.40
168 169 3.199677 AGAGCTACGCTACAGAGTACAG 58.800 50.000 0.00 0.00 39.88 2.74
169 170 3.263489 AGAGCTACGCTACAGAGTACA 57.737 47.619 0.00 0.00 39.88 2.90
170 171 5.681880 CATTAGAGCTACGCTACAGAGTAC 58.318 45.833 0.00 0.00 39.88 2.73
171 172 4.213694 GCATTAGAGCTACGCTACAGAGTA 59.786 45.833 0.00 0.00 39.88 2.59
172 173 3.003897 GCATTAGAGCTACGCTACAGAGT 59.996 47.826 0.00 0.00 39.88 3.24
173 174 3.560503 GCATTAGAGCTACGCTACAGAG 58.439 50.000 0.00 0.00 39.88 3.35
174 175 2.031944 CGCATTAGAGCTACGCTACAGA 60.032 50.000 0.00 0.00 39.88 3.41
175 176 2.311462 CGCATTAGAGCTACGCTACAG 58.689 52.381 0.00 0.00 39.88 2.74
176 177 1.599667 GCGCATTAGAGCTACGCTACA 60.600 52.381 0.30 0.00 45.71 2.74
177 178 1.053811 GCGCATTAGAGCTACGCTAC 58.946 55.000 0.30 0.00 45.71 3.58
178 179 3.474007 GCGCATTAGAGCTACGCTA 57.526 52.632 0.30 0.00 45.71 4.26
179 180 4.327885 GCGCATTAGAGCTACGCT 57.672 55.556 0.30 0.00 45.71 5.07
181 182 1.552348 GCCTGCGCATTAGAGCTACG 61.552 60.000 12.24 0.00 41.53 3.51
182 183 1.224722 GGCCTGCGCATTAGAGCTAC 61.225 60.000 12.24 0.00 41.53 3.58
183 184 1.069765 GGCCTGCGCATTAGAGCTA 59.930 57.895 12.24 0.00 41.53 3.32
184 185 2.203126 GGCCTGCGCATTAGAGCT 60.203 61.111 12.24 0.00 41.53 4.09
185 186 2.514592 TGGCCTGCGCATTAGAGC 60.515 61.111 12.24 9.29 41.33 4.09
186 187 2.528743 CGTGGCCTGCGCATTAGAG 61.529 63.158 12.24 0.00 36.38 2.43
187 188 2.511373 CGTGGCCTGCGCATTAGA 60.511 61.111 12.24 0.00 36.38 2.10
207 208 4.705519 ACAACGTACGGGCGTCGG 62.706 66.667 21.06 3.11 45.00 4.79
208 209 2.730604 AACAACGTACGGGCGTCG 60.731 61.111 21.06 3.43 45.00 5.12
209 210 1.661197 TCAACAACGTACGGGCGTC 60.661 57.895 21.06 0.00 45.00 5.19
211 212 2.848310 GTCAACAACGTACGGGCG 59.152 61.111 21.06 9.67 37.94 6.13
212 213 2.848310 CGTCAACAACGTACGGGC 59.152 61.111 21.06 1.24 46.42 6.13
220 221 0.768846 GTCGACTCGACGTCAACAAC 59.231 55.000 17.16 1.87 46.56 3.32
221 222 3.153364 GTCGACTCGACGTCAACAA 57.847 52.632 17.16 0.00 46.56 2.83
222 223 4.907946 GTCGACTCGACGTCAACA 57.092 55.556 17.16 0.00 46.56 3.33
271 272 2.105128 GGAGATGAGCCACGACGG 59.895 66.667 0.00 0.00 38.11 4.79
272 273 2.105128 GGGAGATGAGCCACGACG 59.895 66.667 0.00 0.00 0.00 5.12
273 274 1.153549 GTGGGAGATGAGCCACGAC 60.154 63.158 0.00 0.00 0.00 4.34
274 275 3.298958 GTGGGAGATGAGCCACGA 58.701 61.111 0.00 0.00 0.00 4.35
276 277 2.512515 GCGTGGGAGATGAGCCAC 60.513 66.667 0.00 0.00 0.00 5.01
277 278 4.147449 CGCGTGGGAGATGAGCCA 62.147 66.667 0.00 0.00 0.00 4.75
291 292 4.925576 AACGATCTAGGCGGCGCG 62.926 66.667 26.95 12.70 0.00 6.86
292 293 3.330853 CAACGATCTAGGCGGCGC 61.331 66.667 26.17 26.17 0.00 6.53
293 294 3.330853 GCAACGATCTAGGCGGCG 61.331 66.667 0.51 0.51 0.00 6.46
294 295 2.967615 GGCAACGATCTAGGCGGC 60.968 66.667 0.00 0.00 0.00 6.53
306 307 0.714994 TATGCGTTTACGTCGGCAAC 59.285 50.000 0.00 0.00 42.22 4.17
307 308 0.714994 GTATGCGTTTACGTCGGCAA 59.285 50.000 0.00 0.00 42.22 4.52
308 309 1.404720 CGTATGCGTTTACGTCGGCA 61.405 55.000 0.00 0.00 39.98 5.69
309 310 1.267799 CGTATGCGTTTACGTCGGC 59.732 57.895 0.00 0.00 39.98 5.54
310 311 1.267799 GCGTATGCGTTTACGTCGG 59.732 57.895 16.73 0.00 45.15 4.79
311 312 4.817784 GCGTATGCGTTTACGTCG 57.182 55.556 16.73 0.00 45.15 5.12
321 322 0.452618 TACGTATACCGCGCGTATGC 60.453 55.000 29.95 24.40 38.19 3.14
322 323 1.241744 GTACGTATACCGCGCGTATG 58.758 55.000 29.95 21.06 41.95 2.39
323 324 0.179250 CGTACGTATACCGCGCGTAT 60.179 55.000 29.95 25.10 41.95 3.06
324 325 1.200594 CGTACGTATACCGCGCGTA 59.799 57.895 29.95 20.41 41.42 4.42
325 326 1.484227 TACGTACGTATACCGCGCGT 61.484 55.000 29.95 18.85 46.55 6.01
326 327 1.047542 GTACGTACGTATACCGCGCG 61.048 60.000 29.05 25.67 41.42 6.86
327 328 1.047542 CGTACGTACGTATACCGCGC 61.048 60.000 33.95 14.34 44.13 6.86
328 329 2.954563 CGTACGTACGTATACCGCG 58.045 57.895 33.95 22.52 44.13 6.46
338 339 2.672381 AGAAGAGCAGAGACGTACGTAC 59.328 50.000 22.87 17.85 0.00 3.67
339 340 2.671888 CAGAAGAGCAGAGACGTACGTA 59.328 50.000 22.87 0.00 0.00 3.57
340 341 1.465387 CAGAAGAGCAGAGACGTACGT 59.535 52.381 23.04 23.04 0.00 3.57
341 342 1.792273 GCAGAAGAGCAGAGACGTACG 60.792 57.143 15.01 15.01 0.00 3.67
342 343 1.470890 AGCAGAAGAGCAGAGACGTAC 59.529 52.381 0.00 0.00 36.85 3.67
343 344 1.740585 GAGCAGAAGAGCAGAGACGTA 59.259 52.381 0.00 0.00 36.85 3.57
344 345 0.525761 GAGCAGAAGAGCAGAGACGT 59.474 55.000 0.00 0.00 36.85 4.34
345 346 0.523125 CGAGCAGAAGAGCAGAGACG 60.523 60.000 0.00 0.00 36.85 4.18
346 347 0.801836 GCGAGCAGAAGAGCAGAGAC 60.802 60.000 0.00 0.00 36.85 3.36
347 348 0.964860 AGCGAGCAGAAGAGCAGAGA 60.965 55.000 0.00 0.00 36.85 3.10
348 349 0.108709 AAGCGAGCAGAAGAGCAGAG 60.109 55.000 0.00 0.00 36.85 3.35
349 350 0.319728 AAAGCGAGCAGAAGAGCAGA 59.680 50.000 0.00 0.00 36.85 4.26
350 351 1.658095 GTAAAGCGAGCAGAAGAGCAG 59.342 52.381 0.00 0.00 36.85 4.24
351 352 1.714794 GTAAAGCGAGCAGAAGAGCA 58.285 50.000 0.00 0.00 36.85 4.26
352 353 0.642800 CGTAAAGCGAGCAGAAGAGC 59.357 55.000 0.00 0.00 44.77 4.09
353 354 1.914700 GACGTAAAGCGAGCAGAAGAG 59.085 52.381 0.00 0.00 44.77 2.85
354 355 1.728179 CGACGTAAAGCGAGCAGAAGA 60.728 52.381 0.00 0.00 44.77 2.87
355 356 0.635731 CGACGTAAAGCGAGCAGAAG 59.364 55.000 0.00 0.00 44.77 2.85
356 357 0.239082 TCGACGTAAAGCGAGCAGAA 59.761 50.000 0.00 0.00 44.77 3.02
357 358 0.453950 GTCGACGTAAAGCGAGCAGA 60.454 55.000 0.00 0.00 44.77 4.26
358 359 0.728129 TGTCGACGTAAAGCGAGCAG 60.728 55.000 11.62 0.00 44.77 4.24
359 360 0.318022 TTGTCGACGTAAAGCGAGCA 60.318 50.000 11.62 0.00 44.77 4.26
360 361 0.989890 ATTGTCGACGTAAAGCGAGC 59.010 50.000 11.62 0.00 44.77 5.03
361 362 3.700130 AAATTGTCGACGTAAAGCGAG 57.300 42.857 11.62 0.00 44.77 5.03
362 363 4.455917 AAAAATTGTCGACGTAAAGCGA 57.544 36.364 11.62 0.00 44.77 4.93
364 365 6.131389 ACTGTAAAAATTGTCGACGTAAAGC 58.869 36.000 11.62 0.00 0.00 3.51
365 366 9.084873 GTAACTGTAAAAATTGTCGACGTAAAG 57.915 33.333 11.62 3.48 0.00 1.85
366 367 7.787026 CGTAACTGTAAAAATTGTCGACGTAAA 59.213 33.333 11.62 0.00 0.00 2.01
367 368 7.043722 ACGTAACTGTAAAAATTGTCGACGTAA 60.044 33.333 11.62 0.30 35.05 3.18
368 369 6.416455 ACGTAACTGTAAAAATTGTCGACGTA 59.584 34.615 11.62 1.43 35.05 3.57
369 370 5.231991 ACGTAACTGTAAAAATTGTCGACGT 59.768 36.000 11.62 0.00 33.33 4.34
370 371 5.553722 CACGTAACTGTAAAAATTGTCGACG 59.446 40.000 11.62 0.00 0.00 5.12
371 372 6.567512 GTCACGTAACTGTAAAAATTGTCGAC 59.432 38.462 9.11 9.11 0.00 4.20
372 373 6.560068 CGTCACGTAACTGTAAAAATTGTCGA 60.560 38.462 0.00 0.00 0.00 4.20
373 374 5.553722 CGTCACGTAACTGTAAAAATTGTCG 59.446 40.000 0.00 0.00 0.00 4.35
374 375 5.842327 CCGTCACGTAACTGTAAAAATTGTC 59.158 40.000 0.00 0.00 0.00 3.18
375 376 5.294060 ACCGTCACGTAACTGTAAAAATTGT 59.706 36.000 0.00 0.00 0.00 2.71
376 377 5.740406 ACCGTCACGTAACTGTAAAAATTG 58.260 37.500 0.00 0.00 0.00 2.32
377 378 5.989551 ACCGTCACGTAACTGTAAAAATT 57.010 34.783 0.00 0.00 0.00 1.82
378 379 6.215845 ACTACCGTCACGTAACTGTAAAAAT 58.784 36.000 0.00 0.00 0.00 1.82
379 380 5.587289 ACTACCGTCACGTAACTGTAAAAA 58.413 37.500 0.00 0.00 0.00 1.94
380 381 5.181690 ACTACCGTCACGTAACTGTAAAA 57.818 39.130 0.00 0.00 0.00 1.52
381 382 4.829064 ACTACCGTCACGTAACTGTAAA 57.171 40.909 0.00 0.00 0.00 2.01
382 383 4.142902 GCTACTACCGTCACGTAACTGTAA 60.143 45.833 0.00 0.00 0.00 2.41
399 400 2.679837 CGAACGAACAGGGTAGCTACTA 59.320 50.000 22.74 0.00 0.00 1.82
404 405 2.098831 GCCGAACGAACAGGGTAGC 61.099 63.158 0.00 0.00 0.00 3.58
506 507 0.251634 GCTCTCTTGGTGGCTAGCTT 59.748 55.000 15.72 0.00 0.00 3.74
609 615 0.672401 CCATTTGACGTGTAGGCGGT 60.672 55.000 0.00 0.00 35.98 5.68
680 688 2.749621 AGGCCATTGTTGTCTTCGAATC 59.250 45.455 5.01 0.00 0.00 2.52
710 722 6.201226 TGTGTTTGAATAGCTTTGTGTTGA 57.799 33.333 0.00 0.00 0.00 3.18
711 723 5.051508 GCTGTGTTTGAATAGCTTTGTGTTG 60.052 40.000 0.00 0.00 33.53 3.33
713 725 4.097741 TGCTGTGTTTGAATAGCTTTGTGT 59.902 37.500 0.00 0.00 37.10 3.72
775 795 1.066303 GGCACCTCATCACTCTCTACG 59.934 57.143 0.00 0.00 0.00 3.51
776 796 1.066303 CGGCACCTCATCACTCTCTAC 59.934 57.143 0.00 0.00 0.00 2.59
777 797 1.064685 TCGGCACCTCATCACTCTCTA 60.065 52.381 0.00 0.00 0.00 2.43
778 798 0.323816 TCGGCACCTCATCACTCTCT 60.324 55.000 0.00 0.00 0.00 3.10
871 899 1.732405 GCGAACTTAATTGGTGCTGCC 60.732 52.381 0.00 0.00 37.90 4.85
1021 1069 0.105760 AGGAGGAGGCTGATCACGAT 60.106 55.000 0.00 0.00 0.00 3.73
1152 1209 0.736325 CGTTGAACCCGCTGAGGTAG 60.736 60.000 0.00 0.00 40.05 3.18
1173 1230 1.542108 GCCATCTCCATGAGCCAGTAC 60.542 57.143 0.00 0.00 30.57 2.73
1296 1353 4.459089 GAGGACTGCAGCGGGGAC 62.459 72.222 15.27 0.00 0.00 4.46
1355 1412 3.371063 GCTGGTCGACGGAGGTCA 61.371 66.667 9.92 0.00 43.61 4.02
1356 1413 4.131088 GGCTGGTCGACGGAGGTC 62.131 72.222 9.92 0.00 39.89 3.85
1360 1417 4.373116 GCAAGGCTGGTCGACGGA 62.373 66.667 9.92 0.00 0.00 4.69
1361 1418 4.379243 AGCAAGGCTGGTCGACGG 62.379 66.667 9.92 6.14 37.57 4.79
1362 1419 2.811317 GAGCAAGGCTGGTCGACG 60.811 66.667 9.92 0.00 39.88 5.12
1366 1423 2.467826 GCATCGAGCAAGGCTGGTC 61.468 63.158 0.00 0.00 44.95 4.02
1367 1424 2.437359 GCATCGAGCAAGGCTGGT 60.437 61.111 0.00 0.00 44.79 4.00
1371 1428 3.567797 GTCGGCATCGAGCAAGGC 61.568 66.667 8.71 2.14 46.91 4.35
1372 1429 3.257561 CGTCGGCATCGAGCAAGG 61.258 66.667 8.71 0.17 46.91 3.61
1373 1430 0.800683 TAACGTCGGCATCGAGCAAG 60.801 55.000 8.71 3.26 46.91 4.01
1375 1432 1.515519 GTAACGTCGGCATCGAGCA 60.516 57.895 8.71 0.00 46.91 4.26
1397 1466 4.849111 CTAAGCTAGCTTTCTTTGTCGG 57.151 45.455 33.50 10.05 37.47 4.79
1410 1479 1.932511 GCACTGAGCAAGCTAAGCTAG 59.067 52.381 13.00 12.41 43.58 3.42
1411 1480 2.015736 GCACTGAGCAAGCTAAGCTA 57.984 50.000 13.00 2.85 43.58 3.32
1412 1481 2.851798 GCACTGAGCAAGCTAAGCT 58.148 52.632 12.90 12.90 46.82 3.74
1426 1495 1.878088 CACAAGCTGTCATTCTGCACT 59.122 47.619 0.00 0.00 42.26 4.40
1432 1501 3.374745 CAAACCACACAAGCTGTCATTC 58.625 45.455 0.00 0.00 0.00 2.67
1459 1528 2.439156 GTCCAGACCCTGCATGCC 60.439 66.667 16.68 0.00 0.00 4.40
1560 1629 1.804326 CGCCCACTGTACGTACTGC 60.804 63.158 26.67 18.54 0.00 4.40
1569 1638 4.316823 TCCTCCCTCGCCCACTGT 62.317 66.667 0.00 0.00 0.00 3.55
1651 1720 5.336531 CGTGGTTCTTGTAGTAGGACTTGAT 60.337 44.000 0.00 0.00 0.00 2.57
1719 1788 4.619760 ACAACGTAGTCATTGACACGTATG 59.380 41.667 29.67 27.94 45.00 2.39
1760 1833 6.654161 GGAAGAGAGACATCATATCATTTGGG 59.346 42.308 0.00 0.00 0.00 4.12
1767 1844 6.653320 ACGTAGAGGAAGAGAGACATCATATC 59.347 42.308 0.00 0.00 0.00 1.63
1768 1845 6.429692 CACGTAGAGGAAGAGAGACATCATAT 59.570 42.308 0.00 0.00 0.00 1.78
1769 1846 5.760743 CACGTAGAGGAAGAGAGACATCATA 59.239 44.000 0.00 0.00 0.00 2.15
1770 1847 4.578516 CACGTAGAGGAAGAGAGACATCAT 59.421 45.833 0.00 0.00 0.00 2.45
1781 1858 2.164422 TCTGCATCACACGTAGAGGAAG 59.836 50.000 6.09 5.01 0.00 3.46
1782 1859 2.094700 GTCTGCATCACACGTAGAGGAA 60.095 50.000 6.09 0.00 0.00 3.36
1785 1862 1.539341 CGTCTGCATCACACGTAGAG 58.461 55.000 0.00 0.00 0.00 2.43
1786 1863 0.170339 CCGTCTGCATCACACGTAGA 59.830 55.000 0.00 0.00 0.00 2.59
2032 2110 3.995506 GATGCCCCACGGGTTGAGG 62.996 68.421 0.41 0.00 46.51 3.86
2302 2380 1.303236 CACCATGCCGAGAAACCCA 60.303 57.895 0.00 0.00 0.00 4.51
2303 2381 2.700773 GCACCATGCCGAGAAACCC 61.701 63.158 0.00 0.00 37.42 4.11
2305 2383 1.796796 GAGCACCATGCCGAGAAAC 59.203 57.895 0.00 0.00 46.52 2.78
2592 5278 6.090088 CAGAGAGACGAAACGAATCAAGAATT 59.910 38.462 0.00 0.00 0.00 2.17
2658 5350 3.136809 TCTCTACTACAGTCCAGCCTAGG 59.863 52.174 3.67 3.67 0.00 3.02
2699 5397 5.590259 ACAAGTCAAAATTGCTACACTCAGT 59.410 36.000 0.00 0.00 0.00 3.41
2722 5421 1.004277 CTCAGACAGCACCGTCGAAC 61.004 60.000 0.00 0.00 40.98 3.95
2726 5425 0.315568 ACTTCTCAGACAGCACCGTC 59.684 55.000 0.00 0.00 36.08 4.79
2734 5433 8.150945 AGTCAGCTAATTAAAACTTCTCAGACA 58.849 33.333 0.00 0.00 0.00 3.41
2762 5470 8.834749 AGTTCTACTTTCCATTTACAACTCTC 57.165 34.615 0.00 0.00 0.00 3.20
2802 5522 3.249799 TGTGCAAGGAAATTGTGTACTCG 59.750 43.478 0.00 0.00 41.29 4.18
2817 5832 2.096496 GGATGTTCGATCCTTGTGCAAG 59.904 50.000 5.03 5.03 38.14 4.01
2831 5846 7.093289 ACAGTATGGCCTATGTATAGGATGTTC 60.093 40.741 19.62 7.95 46.91 3.18
2873 5888 1.680207 GAAATTCAGAGATGGCCCTGC 59.320 52.381 0.00 0.00 0.00 4.85
2877 5892 3.004106 CCGATTGAAATTCAGAGATGGCC 59.996 47.826 0.00 0.00 0.00 5.36
2890 5905 4.215399 CCTCACAAAACTAGCCGATTGAAA 59.785 41.667 0.00 0.00 0.00 2.69
2893 5908 3.074412 ACCTCACAAAACTAGCCGATTG 58.926 45.455 0.00 0.00 0.00 2.67
2894 5909 3.074412 CACCTCACAAAACTAGCCGATT 58.926 45.455 0.00 0.00 0.00 3.34
2895 5910 2.301870 TCACCTCACAAAACTAGCCGAT 59.698 45.455 0.00 0.00 0.00 4.18
2927 5946 0.103390 TTGCGTCGGACAAGTGAAGA 59.897 50.000 9.10 0.00 0.00 2.87
2933 5952 0.591170 ATTTGGTTGCGTCGGACAAG 59.409 50.000 9.10 0.00 0.00 3.16
2934 5953 0.309302 CATTTGGTTGCGTCGGACAA 59.691 50.000 9.10 0.00 0.00 3.18
2942 5961 0.854062 CTTGCACACATTTGGTTGCG 59.146 50.000 0.00 0.00 36.76 4.85
2946 5965 1.067516 GAGCACTTGCACACATTTGGT 59.932 47.619 3.62 0.00 45.16 3.67
2952 5971 0.451383 GTGTTGAGCACTTGCACACA 59.549 50.000 14.96 7.08 41.90 3.72
2975 5994 2.415512 GAGGCGATGTACAAGGTGAAAC 59.584 50.000 0.00 0.00 0.00 2.78
2976 5995 2.037902 TGAGGCGATGTACAAGGTGAAA 59.962 45.455 0.00 0.00 0.00 2.69
2977 5996 1.621317 TGAGGCGATGTACAAGGTGAA 59.379 47.619 0.00 0.00 0.00 3.18
2978 5997 1.262417 TGAGGCGATGTACAAGGTGA 58.738 50.000 0.00 0.00 0.00 4.02
2979 5998 2.315925 ATGAGGCGATGTACAAGGTG 57.684 50.000 0.00 0.00 0.00 4.00
2980 5999 2.365617 CCTATGAGGCGATGTACAAGGT 59.634 50.000 0.00 0.00 0.00 3.50
2981 6000 2.289072 CCCTATGAGGCGATGTACAAGG 60.289 54.545 0.00 0.00 32.73 3.61
2982 6001 2.365617 ACCCTATGAGGCGATGTACAAG 59.634 50.000 0.00 0.00 32.73 3.16
2983 6002 2.102420 CACCCTATGAGGCGATGTACAA 59.898 50.000 0.00 0.00 32.73 2.41
2984 6003 1.686587 CACCCTATGAGGCGATGTACA 59.313 52.381 0.00 0.00 32.73 2.90
2985 6004 1.605712 GCACCCTATGAGGCGATGTAC 60.606 57.143 0.00 0.00 32.73 2.90
2986 6005 0.679505 GCACCCTATGAGGCGATGTA 59.320 55.000 0.00 0.00 32.73 2.29
2987 6006 1.447643 GCACCCTATGAGGCGATGT 59.552 57.895 0.00 0.00 32.73 3.06
2988 6007 4.368391 GCACCCTATGAGGCGATG 57.632 61.111 0.00 0.00 32.73 3.84
2992 6011 0.037232 GGTATCGCACCCTATGAGGC 60.037 60.000 0.00 0.00 42.07 4.70
3002 6021 1.356527 GGGTGTTCGTGGTATCGCAC 61.357 60.000 0.00 0.00 0.00 5.34
3003 6022 1.079681 GGGTGTTCGTGGTATCGCA 60.080 57.895 0.00 0.00 0.00 5.10
3004 6023 0.390735 AAGGGTGTTCGTGGTATCGC 60.391 55.000 0.00 0.00 0.00 4.58
3005 6024 2.945447 TAAGGGTGTTCGTGGTATCG 57.055 50.000 0.00 0.00 0.00 2.92
3006 6025 4.269363 CGAATTAAGGGTGTTCGTGGTATC 59.731 45.833 0.99 0.00 39.70 2.24
3007 6026 4.186159 CGAATTAAGGGTGTTCGTGGTAT 58.814 43.478 0.99 0.00 39.70 2.73
3008 6027 3.587923 CGAATTAAGGGTGTTCGTGGTA 58.412 45.455 0.99 0.00 39.70 3.25
3009 6028 2.419667 CGAATTAAGGGTGTTCGTGGT 58.580 47.619 0.99 0.00 39.70 4.16
3014 6033 2.414138 CACCGACGAATTAAGGGTGTTC 59.586 50.000 0.00 0.00 42.43 3.18
3015 6034 2.419667 CACCGACGAATTAAGGGTGTT 58.580 47.619 0.00 0.00 42.43 3.32
3016 6035 2.088950 CACCGACGAATTAAGGGTGT 57.911 50.000 0.00 0.00 42.43 4.16
3018 6037 0.322322 TGCACCGACGAATTAAGGGT 59.678 50.000 0.00 0.00 0.00 4.34
3019 6038 0.725117 GTGCACCGACGAATTAAGGG 59.275 55.000 5.22 0.00 0.00 3.95
3020 6039 0.368907 CGTGCACCGACGAATTAAGG 59.631 55.000 12.15 0.00 42.10 2.69
3021 6040 1.342555 TCGTGCACCGACGAATTAAG 58.657 50.000 12.15 0.00 45.08 1.85
3022 6041 3.493351 TCGTGCACCGACGAATTAA 57.507 47.368 12.15 0.00 45.08 1.40
3045 6064 2.548480 GTGTTCACTGCAGTTTACCTCC 59.452 50.000 18.94 5.39 0.00 4.30
3046 6065 3.248602 CAGTGTTCACTGCAGTTTACCTC 59.751 47.826 18.94 12.91 0.00 3.85
3062 6081 2.166254 CTGTTTTGGGTGAAGCAGTGTT 59.834 45.455 0.00 0.00 34.40 3.32
3068 6087 1.264288 CTCGACTGTTTTGGGTGAAGC 59.736 52.381 0.00 0.00 0.00 3.86
3071 6090 0.534203 GCCTCGACTGTTTTGGGTGA 60.534 55.000 0.00 0.00 0.00 4.02
3072 6091 0.817634 TGCCTCGACTGTTTTGGGTG 60.818 55.000 0.00 0.00 0.00 4.61
3073 6092 0.535102 CTGCCTCGACTGTTTTGGGT 60.535 55.000 0.00 0.00 0.00 4.51
3082 6106 3.710722 CAAGGGGCTGCCTCGACT 61.711 66.667 19.68 9.10 0.00 4.18
3093 6117 2.682155 GTCTAGTGAAGAGCAAGGGG 57.318 55.000 0.00 0.00 33.88 4.79
3105 6129 0.745845 GCATGGCAGGTGGTCTAGTG 60.746 60.000 0.00 0.00 0.00 2.74
3107 6131 1.153086 GGCATGGCAGGTGGTCTAG 60.153 63.158 15.47 0.00 0.00 2.43
3113 6137 2.601067 TGGTTGGCATGGCAGGTG 60.601 61.111 22.17 0.00 0.00 4.00
3114 6138 2.601367 GTGGTTGGCATGGCAGGT 60.601 61.111 22.17 0.00 0.00 4.00
3115 6139 2.601067 TGTGGTTGGCATGGCAGG 60.601 61.111 22.17 0.00 0.00 4.85
3116 6140 1.870055 GACTGTGGTTGGCATGGCAG 61.870 60.000 22.17 11.92 0.00 4.85
3124 6148 6.464222 TCTACTTAAATCAGACTGTGGTTGG 58.536 40.000 1.59 0.00 26.30 3.77
3131 6155 8.484641 TTTCATGCTCTACTTAAATCAGACTG 57.515 34.615 0.00 0.00 0.00 3.51
3136 6160 9.905713 ATAACCTTTCATGCTCTACTTAAATCA 57.094 29.630 0.00 0.00 0.00 2.57
3141 6165 7.620880 ACACATAACCTTTCATGCTCTACTTA 58.379 34.615 0.00 0.00 0.00 2.24
3142 6166 6.476378 ACACATAACCTTTCATGCTCTACTT 58.524 36.000 0.00 0.00 0.00 2.24
3158 6194 3.747193 CATGCTCGTTTGGACACATAAC 58.253 45.455 0.00 0.00 0.00 1.89
3161 6197 0.523072 GCATGCTCGTTTGGACACAT 59.477 50.000 11.37 0.00 0.00 3.21
3167 6203 1.202290 GGTTATGGCATGCTCGTTTGG 60.202 52.381 18.92 0.00 0.00 3.28
3189 6232 3.879295 ACATTGAACAGTCTGAACCAGTG 59.121 43.478 6.91 10.02 32.61 3.66
3191 6234 4.576053 TGAACATTGAACAGTCTGAACCAG 59.424 41.667 6.91 0.00 0.00 4.00
3192 6235 4.522114 TGAACATTGAACAGTCTGAACCA 58.478 39.130 6.91 0.00 0.00 3.67
3193 6236 4.576463 ACTGAACATTGAACAGTCTGAACC 59.424 41.667 6.91 0.00 40.19 3.62
3226 6290 2.973945 AGTAAGAAGGGCATCGAACAC 58.026 47.619 0.00 0.00 0.00 3.32
3230 6294 2.888594 CGAAAGTAAGAAGGGCATCGA 58.111 47.619 0.00 0.00 0.00 3.59
3231 6295 1.327764 GCGAAAGTAAGAAGGGCATCG 59.672 52.381 0.00 0.00 0.00 3.84
3232 6296 1.671328 GGCGAAAGTAAGAAGGGCATC 59.329 52.381 0.00 0.00 0.00 3.91
3254 6318 3.744660 AGAGTAAAAGAGCACAAGGTGG 58.255 45.455 0.00 0.00 33.64 4.61
3262 6326 7.064609 CGATATTGGACAAAGAGTAAAAGAGCA 59.935 37.037 0.00 0.00 0.00 4.26
3270 6334 7.652105 GCTGATAACGATATTGGACAAAGAGTA 59.348 37.037 0.00 0.00 0.00 2.59
3271 6335 6.480320 GCTGATAACGATATTGGACAAAGAGT 59.520 38.462 0.00 0.00 0.00 3.24
3272 6336 6.073548 GGCTGATAACGATATTGGACAAAGAG 60.074 42.308 0.00 0.00 0.00 2.85
3273 6337 5.758296 GGCTGATAACGATATTGGACAAAGA 59.242 40.000 0.00 0.00 0.00 2.52
3274 6338 5.049405 GGGCTGATAACGATATTGGACAAAG 60.049 44.000 0.00 0.00 0.00 2.77
3275 6339 4.819630 GGGCTGATAACGATATTGGACAAA 59.180 41.667 0.00 0.00 0.00 2.83
3276 6340 4.102524 AGGGCTGATAACGATATTGGACAA 59.897 41.667 0.00 0.00 0.00 3.18
3277 6341 3.646162 AGGGCTGATAACGATATTGGACA 59.354 43.478 0.00 0.00 0.00 4.02
3283 6347 3.056749 GGACGAAGGGCTGATAACGATAT 60.057 47.826 0.00 0.00 0.00 1.63
3286 6350 0.458669 GGACGAAGGGCTGATAACGA 59.541 55.000 0.00 0.00 0.00 3.85
3287 6351 0.174845 TGGACGAAGGGCTGATAACG 59.825 55.000 0.00 0.00 0.00 3.18
3290 6354 0.824109 CAGTGGACGAAGGGCTGATA 59.176 55.000 0.00 0.00 0.00 2.15
3299 6363 1.684450 TGCAAGTACTCAGTGGACGAA 59.316 47.619 0.00 0.00 0.00 3.85
3397 6461 2.690778 GCGCACAATGGAGACCACC 61.691 63.158 0.30 0.00 35.80 4.61
3401 6465 1.565156 TTGTCGCGCACAATGGAGAC 61.565 55.000 17.55 10.23 40.29 3.36
3405 6469 0.453282 CTCTTTGTCGCGCACAATGG 60.453 55.000 24.27 19.12 44.77 3.16
3413 6477 0.985549 GCTCAGTACTCTTTGTCGCG 59.014 55.000 0.00 0.00 0.00 5.87
3425 6489 3.075005 GAGGGGCGTGGCTCAGTA 61.075 66.667 0.00 0.00 0.00 2.74
3463 6527 1.298014 GGTTCAGCTCCCTCTGGTG 59.702 63.158 0.00 0.00 34.91 4.17
3464 6528 1.152030 TGGTTCAGCTCCCTCTGGT 60.152 57.895 0.00 0.00 34.91 4.00
3465 6529 1.197430 ACTGGTTCAGCTCCCTCTGG 61.197 60.000 0.00 0.00 34.37 3.86
3466 6530 0.036577 CACTGGTTCAGCTCCCTCTG 60.037 60.000 0.00 0.00 34.37 3.35
3467 6531 0.178921 TCACTGGTTCAGCTCCCTCT 60.179 55.000 0.00 0.00 34.37 3.69
3468 6532 0.908198 ATCACTGGTTCAGCTCCCTC 59.092 55.000 0.00 0.00 34.37 4.30
3469 6533 1.280421 GAATCACTGGTTCAGCTCCCT 59.720 52.381 0.00 0.00 34.37 4.20
3470 6534 1.280421 AGAATCACTGGTTCAGCTCCC 59.720 52.381 4.84 0.00 34.37 4.30
3471 6535 2.777832 AGAATCACTGGTTCAGCTCC 57.222 50.000 4.84 0.00 34.37 4.70
3472 6536 3.668447 TGAAGAATCACTGGTTCAGCTC 58.332 45.455 4.84 0.00 34.37 4.09
3473 6537 3.072184 ACTGAAGAATCACTGGTTCAGCT 59.928 43.478 10.16 0.00 46.56 4.24
3474 6538 3.406764 ACTGAAGAATCACTGGTTCAGC 58.593 45.455 10.16 0.00 46.56 4.26
3476 6540 3.390967 TGGACTGAAGAATCACTGGTTCA 59.609 43.478 4.84 0.00 0.00 3.18
3477 6541 4.008074 TGGACTGAAGAATCACTGGTTC 57.992 45.455 0.00 0.00 0.00 3.62
3478 6542 4.137543 GTTGGACTGAAGAATCACTGGTT 58.862 43.478 0.00 0.00 0.00 3.67
3479 6543 3.392616 AGTTGGACTGAAGAATCACTGGT 59.607 43.478 0.00 0.00 0.00 4.00
3499 6563 4.058817 GGATGTTGAGAAGTTTGTCGAGT 58.941 43.478 0.00 0.00 0.00 4.18
3500 6564 3.433615 GGGATGTTGAGAAGTTTGTCGAG 59.566 47.826 0.00 0.00 0.00 4.04
3505 6569 3.490348 ACCAGGGATGTTGAGAAGTTTG 58.510 45.455 0.00 0.00 0.00 2.93
3533 6597 0.250038 TGGACAGAGCTGTGAGCAAC 60.250 55.000 19.13 3.27 45.56 4.17
3543 6607 2.300437 AGTCTTGGTACTTGGACAGAGC 59.700 50.000 12.39 0.00 0.00 4.09
3560 6624 5.449177 GCTGTCAAGTTTAGCAAACAAGTCT 60.449 40.000 12.28 0.00 43.79 3.24
3562 6626 4.399303 AGCTGTCAAGTTTAGCAAACAAGT 59.601 37.500 12.28 0.00 43.79 3.16
3572 6636 1.953686 GTGCCCAAGCTGTCAAGTTTA 59.046 47.619 0.00 0.00 40.80 2.01
3599 6663 5.718649 TCAGAAAAGTTGTTCACGAAGAG 57.281 39.130 0.00 0.00 0.00 2.85
3600 6664 6.489127 TTTCAGAAAAGTTGTTCACGAAGA 57.511 33.333 0.00 0.00 0.00 2.87
3601 6665 7.561237 TTTTTCAGAAAAGTTGTTCACGAAG 57.439 32.000 8.34 0.00 31.41 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.