Multiple sequence alignment - TraesCS5B01G503600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G503600 chr5B 100.000 2892 0 0 1 2892 670083434 670080543 0.000000e+00 5341.0
1 TraesCS5B01G503600 chr5B 82.761 1311 124 49 356 1635 670099886 670098647 0.000000e+00 1075.0
2 TraesCS5B01G503600 chr5B 92.913 381 20 6 2513 2890 670097288 670096912 5.450000e-152 547.0
3 TraesCS5B01G503600 chr5B 92.233 206 10 2 1713 1914 670098714 670098511 1.310000e-73 287.0
4 TraesCS5B01G503600 chr5B 91.925 161 10 3 1 159 670100138 670099979 3.750000e-54 222.0
5 TraesCS5B01G503600 chr5B 87.597 129 16 0 2236 2364 670099106 670098978 1.800000e-32 150.0
6 TraesCS5B01G503600 chr5B 82.927 164 20 2 1416 1571 239338783 239338620 1.080000e-29 141.0
7 TraesCS5B01G503600 chr5B 93.590 78 2 3 1898 1972 670098498 670098421 2.360000e-21 113.0
8 TraesCS5B01G503600 chr5B 96.825 63 2 0 1573 1635 670081721 670081659 3.940000e-19 106.0
9 TraesCS5B01G503600 chr5B 96.825 63 2 0 1714 1776 670081862 670081800 3.940000e-19 106.0
10 TraesCS5B01G503600 chr5B 96.296 54 2 0 1416 1469 670081063 670081010 3.970000e-14 89.8
11 TraesCS5B01G503600 chr5B 96.296 54 2 0 2372 2425 670082019 670081966 3.970000e-14 89.8
12 TraesCS5B01G503600 chr5B 97.143 35 1 0 2391 2425 670098857 670098823 3.110000e-05 60.2
13 TraesCS5B01G503600 chr5D 86.521 1699 125 40 1 1635 530853200 530851542 0.000000e+00 1773.0
14 TraesCS5B01G503600 chr5D 91.537 449 11 2 1713 2161 530851605 530851184 6.900000e-166 593.0
15 TraesCS5B01G503600 chr5D 92.432 185 13 1 2242 2425 530839777 530839593 2.210000e-66 263.0
16 TraesCS5B01G503600 chr5D 85.778 225 23 7 1732 1956 530839508 530839293 2.240000e-56 230.0
17 TraesCS5B01G503600 chr5D 84.681 235 19 12 613 836 530840575 530840347 4.850000e-53 219.0
18 TraesCS5B01G503600 chr5D 95.082 61 3 0 1416 1476 530839646 530839586 2.370000e-16 97.1
19 TraesCS5B01G503600 chr5D 85.057 87 13 0 2245 2331 530775793 530775707 3.970000e-14 89.8
20 TraesCS5B01G503600 chr5D 94.444 54 3 0 2372 2425 530851778 530851725 1.850000e-12 84.2
21 TraesCS5B01G503600 chr4A 86.700 1594 119 49 1 1555 641415823 641417362 0.000000e+00 1683.0
22 TraesCS5B01G503600 chr4A 88.449 303 18 5 1653 1951 641417365 641417654 1.650000e-92 350.0
23 TraesCS5B01G503600 chr4A 83.962 212 20 11 1706 1917 641425751 641425948 1.060000e-44 191.0
24 TraesCS5B01G503600 chr4A 91.852 135 8 1 2242 2373 641425478 641425612 4.920000e-43 185.0
25 TraesCS5B01G503600 chr4A 85.161 155 17 4 1993 2142 641417726 641417879 1.390000e-33 154.0
26 TraesCS5B01G503600 chr3B 94.030 67 4 0 2171 2237 633258055 633258121 5.100000e-18 102.0
27 TraesCS5B01G503600 chr1B 93.939 66 4 0 2172 2237 375985046 375985111 1.830000e-17 100.0
28 TraesCS5B01G503600 chr1D 94.828 58 3 0 2178 2235 374738520 374738463 1.100000e-14 91.6
29 TraesCS5B01G503600 chr5A 90.323 62 6 0 233 294 702579604 702579665 6.640000e-12 82.4
30 TraesCS5B01G503600 chr2B 88.525 61 7 0 1487 1547 784765068 784765128 1.110000e-09 75.0
31 TraesCS5B01G503600 chr2B 82.051 78 9 4 222 296 34346863 34346938 8.650000e-06 62.1
32 TraesCS5B01G503600 chr7B 91.111 45 4 0 239 283 581324781 581324825 8.650000e-06 62.1
33 TraesCS5B01G503600 chr6A 100.000 30 0 0 233 262 564860759 564860788 4.030000e-04 56.5
34 TraesCS5B01G503600 chr3A 100.000 28 0 0 243 270 27768951 27768924 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G503600 chr5B 670080543 670083434 2891 True 1146.520000 5341 97.24840 1 2892 5 chr5B.!!$R2 2891
1 TraesCS5B01G503600 chr5B 670096912 670100138 3226 True 350.600000 1075 91.16600 1 2890 7 chr5B.!!$R3 2889
2 TraesCS5B01G503600 chr5D 530851184 530853200 2016 True 816.733333 1773 90.83400 1 2425 3 chr5D.!!$R3 2424
3 TraesCS5B01G503600 chr5D 530839293 530840575 1282 True 202.275000 263 89.49325 613 2425 4 chr5D.!!$R2 1812
4 TraesCS5B01G503600 chr4A 641415823 641417879 2056 False 729.000000 1683 86.77000 1 2142 3 chr4A.!!$F1 2141

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 654 1.077645 GTATGTTCGTGCCGCGGTAA 61.078 55.0 28.7 13.31 41.72 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2387 3149 0.169009 CATGAGACAGAGTCGACGCA 59.831 55.0 21.54 7.37 37.67 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 147 1.941325 GGAGTGTTCCGCCTTCATAG 58.059 55.000 0.00 0.00 32.79 2.23
209 217 1.666888 CGCCATTTTGAGTGTTCTGCC 60.667 52.381 0.00 0.00 0.00 4.85
270 280 5.309543 TGGGATCTAGTTTTGAAGGTCTCAA 59.690 40.000 0.00 0.00 42.48 3.02
320 330 9.840427 CAATTAATAATTTGGACGTCTTGTTCT 57.160 29.630 16.46 0.00 0.00 3.01
327 337 3.972133 TGGACGTCTTGTTCTAGGGATA 58.028 45.455 16.46 0.00 0.00 2.59
328 338 3.698040 TGGACGTCTTGTTCTAGGGATAC 59.302 47.826 16.46 0.00 0.00 2.24
329 339 3.698040 GGACGTCTTGTTCTAGGGATACA 59.302 47.826 16.46 0.00 39.74 2.29
330 340 4.159135 GGACGTCTTGTTCTAGGGATACAA 59.841 45.833 16.46 0.00 39.74 2.41
331 341 5.337009 GGACGTCTTGTTCTAGGGATACAAA 60.337 44.000 16.46 0.00 39.74 2.83
332 342 6.105397 ACGTCTTGTTCTAGGGATACAAAA 57.895 37.500 0.00 0.00 39.74 2.44
333 343 6.527423 ACGTCTTGTTCTAGGGATACAAAAA 58.473 36.000 0.00 0.00 39.74 1.94
334 344 7.166167 ACGTCTTGTTCTAGGGATACAAAAAT 58.834 34.615 0.00 0.00 39.74 1.82
335 345 8.316214 ACGTCTTGTTCTAGGGATACAAAAATA 58.684 33.333 0.00 0.00 39.74 1.40
336 346 9.158233 CGTCTTGTTCTAGGGATACAAAAATAA 57.842 33.333 0.00 0.00 39.74 1.40
384 395 9.730420 TCTATGAAAAAGAAAAGAAAAACCTCG 57.270 29.630 0.00 0.00 0.00 4.63
385 396 9.516314 CTATGAAAAAGAAAAGAAAAACCTCGT 57.484 29.630 0.00 0.00 0.00 4.18
403 414 5.364778 CCTCGTGGGTTGTGATAAATGATA 58.635 41.667 0.00 0.00 0.00 2.15
417 428 8.066595 GTGATAAATGATACAGTGCATCACTTC 58.933 37.037 8.23 4.49 42.59 3.01
443 454 4.284490 AGCACAGGAGAAATGAGAGTAACA 59.716 41.667 0.00 0.00 0.00 2.41
447 458 7.334421 GCACAGGAGAAATGAGAGTAACATTTA 59.666 37.037 0.00 0.00 44.46 1.40
455 466 9.530129 GAAATGAGAGTAACATTTACAAAGTCG 57.470 33.333 0.00 0.00 44.46 4.18
460 471 8.882415 AGAGTAACATTTACAAAGTCGAAGAA 57.118 30.769 0.00 0.00 39.69 2.52
491 507 2.482839 CGTTGTTCAAAACCAAGGCCAT 60.483 45.455 5.01 0.00 0.00 4.40
521 538 1.680338 GTGAAAGCTTGTGACACCCT 58.320 50.000 0.00 0.00 0.00 4.34
622 649 2.693285 GTCGTATGTTCGTGCCGC 59.307 61.111 0.00 0.00 0.00 6.53
623 650 2.877113 TCGTATGTTCGTGCCGCG 60.877 61.111 0.00 0.00 43.01 6.46
624 651 3.908951 CGTATGTTCGTGCCGCGG 61.909 66.667 24.05 24.05 41.72 6.46
625 652 2.812178 GTATGTTCGTGCCGCGGT 60.812 61.111 28.70 6.42 41.72 5.68
626 653 1.516821 GTATGTTCGTGCCGCGGTA 60.517 57.895 28.70 21.83 41.72 4.02
627 654 1.077645 GTATGTTCGTGCCGCGGTAA 61.078 55.000 28.70 13.31 41.72 2.85
628 655 1.077645 TATGTTCGTGCCGCGGTAAC 61.078 55.000 28.70 23.35 41.72 2.50
763 813 2.250939 CGACAAAAGGAGCCGCACA 61.251 57.895 0.00 0.00 0.00 4.57
771 821 3.564027 GAGCCGCACACATACGCC 61.564 66.667 0.00 0.00 0.00 5.68
777 827 2.046411 CACACATACGCCCCAGCA 60.046 61.111 0.00 0.00 39.83 4.41
847 903 2.258591 CTGGGAGACGACGGTGTG 59.741 66.667 0.00 0.00 0.00 3.82
886 942 3.629398 GGACAGCTCAAACTTATCCATGG 59.371 47.826 4.97 4.97 0.00 3.66
892 948 4.340381 GCTCAAACTTATCCATGGATGCTT 59.660 41.667 33.41 19.26 36.17 3.91
893 955 5.163478 GCTCAAACTTATCCATGGATGCTTT 60.163 40.000 33.41 23.06 36.17 3.51
895 957 6.189859 TCAAACTTATCCATGGATGCTTTCT 58.810 36.000 33.41 12.02 36.17 2.52
977 1318 2.127251 GTATGCATGCTCGTCGATCAA 58.873 47.619 20.33 0.00 0.00 2.57
985 1326 4.840401 TGCTCGTCGATCAAGTTAATTG 57.160 40.909 0.00 0.00 40.52 2.32
987 1328 3.307242 GCTCGTCGATCAAGTTAATTGCT 59.693 43.478 0.00 0.00 38.89 3.91
988 1329 4.503007 GCTCGTCGATCAAGTTAATTGCTA 59.497 41.667 0.00 0.00 38.89 3.49
993 1361 6.074994 CGTCGATCAAGTTAATTGCTACCTAC 60.075 42.308 0.00 0.00 38.89 3.18
1104 1485 1.085893 CATCCGTAGTGCATGCAACA 58.914 50.000 24.58 10.43 0.00 3.33
1127 1508 7.315142 ACATCACGTTGCAAGATTCATAATTT 58.685 30.769 0.00 0.00 0.00 1.82
1129 1510 6.676950 TCACGTTGCAAGATTCATAATTTGT 58.323 32.000 0.00 0.00 0.00 2.83
1284 1676 4.824515 CGTCGCCTCCTCTCCCCT 62.825 72.222 0.00 0.00 0.00 4.79
1342 1734 1.106285 GATTTGCATCGGGCTCCTTT 58.894 50.000 0.00 0.00 45.15 3.11
1478 1878 2.585247 GCCGCCGGTGATGACTAC 60.585 66.667 18.79 0.00 0.00 2.73
1570 1979 5.674525 CCTAGCATGAGGTTATTGAGTTCA 58.325 41.667 0.00 0.00 0.00 3.18
1571 1980 5.525378 CCTAGCATGAGGTTATTGAGTTCAC 59.475 44.000 0.00 0.00 0.00 3.18
1572 1981 4.910195 AGCATGAGGTTATTGAGTTCACA 58.090 39.130 0.00 0.00 0.00 3.58
1573 1982 4.697352 AGCATGAGGTTATTGAGTTCACAC 59.303 41.667 0.00 0.00 0.00 3.82
1574 1983 4.455533 GCATGAGGTTATTGAGTTCACACA 59.544 41.667 0.00 0.00 0.00 3.72
1575 1984 5.124457 GCATGAGGTTATTGAGTTCACACAT 59.876 40.000 0.00 0.00 0.00 3.21
1576 1985 6.549061 CATGAGGTTATTGAGTTCACACATG 58.451 40.000 0.00 0.00 0.00 3.21
1577 1986 5.863965 TGAGGTTATTGAGTTCACACATGA 58.136 37.500 0.00 0.00 0.00 3.07
1578 1987 6.295249 TGAGGTTATTGAGTTCACACATGAA 58.705 36.000 0.00 0.00 42.73 2.57
1599 2008 7.820578 TGAACATATTCATAACATGCATGGA 57.179 32.000 29.41 17.72 40.01 3.41
1600 2009 8.411991 TGAACATATTCATAACATGCATGGAT 57.588 30.769 29.41 19.13 40.01 3.41
1601 2010 8.517056 TGAACATATTCATAACATGCATGGATC 58.483 33.333 29.41 12.29 40.01 3.36
1602 2011 7.400599 ACATATTCATAACATGCATGGATCC 57.599 36.000 29.41 4.20 0.00 3.36
1603 2012 6.949463 ACATATTCATAACATGCATGGATCCA 59.051 34.615 29.41 18.88 0.00 3.41
1604 2013 7.618117 ACATATTCATAACATGCATGGATCCAT 59.382 33.333 29.41 22.15 37.08 3.41
1624 2033 5.486095 CATGTGTACATGTATCGATCACG 57.514 43.478 9.18 0.00 46.40 4.35
1625 2034 4.625972 TGTGTACATGTATCGATCACGT 57.374 40.909 9.18 1.44 40.69 4.49
1626 2035 5.738118 TGTGTACATGTATCGATCACGTA 57.262 39.130 9.18 0.42 40.69 3.57
1627 2036 5.504392 TGTGTACATGTATCGATCACGTAC 58.496 41.667 18.67 18.67 40.69 3.67
1628 2037 4.606004 GTGTACATGTATCGATCACGTACG 59.394 45.833 15.01 15.01 37.31 3.67
1629 2038 3.263602 ACATGTATCGATCACGTACGG 57.736 47.619 21.06 8.79 40.69 4.02
1630 2039 1.976728 CATGTATCGATCACGTACGGC 59.023 52.381 21.06 4.98 40.69 5.68
1631 2040 1.302366 TGTATCGATCACGTACGGCT 58.698 50.000 21.06 2.98 40.69 5.52
1632 2041 1.003223 TGTATCGATCACGTACGGCTG 60.003 52.381 21.06 9.94 40.69 4.85
1633 2042 0.589708 TATCGATCACGTACGGCTGG 59.410 55.000 21.06 6.20 40.69 4.85
1634 2043 1.381928 ATCGATCACGTACGGCTGGT 61.382 55.000 21.06 5.70 40.69 4.00
1635 2044 1.872234 CGATCACGTACGGCTGGTG 60.872 63.158 21.06 8.37 34.56 4.17
1636 2045 2.125673 ATCACGTACGGCTGGTGC 60.126 61.111 21.06 0.00 38.76 5.01
1641 2050 3.466879 GTACGGCTGGTGCGTAAC 58.533 61.111 0.00 0.00 40.82 2.50
1642 2051 2.126385 TACGGCTGGTGCGTAACG 60.126 61.111 0.00 0.00 40.82 3.18
1643 2052 2.918345 TACGGCTGGTGCGTAACGT 61.918 57.895 0.00 0.00 40.82 3.99
1644 2053 1.581727 TACGGCTGGTGCGTAACGTA 61.582 55.000 0.00 0.00 40.82 3.57
1645 2054 2.438954 CGGCTGGTGCGTAACGTAC 61.439 63.158 0.00 0.00 41.39 3.67
1676 2087 4.721142 GCATGAGCTTCTTGAGTCTTTTC 58.279 43.478 0.00 0.00 37.91 2.29
1695 2106 3.272439 TCTGTTTGCGAAATGAGCTTG 57.728 42.857 0.00 0.00 35.28 4.01
1865 2283 4.143333 GCGAGGGAGCAGGCGTTA 62.143 66.667 0.00 0.00 37.05 3.18
1973 2473 1.089920 ACTACGTACCAGCCGTGTAG 58.910 55.000 0.00 0.00 39.22 2.74
1975 2475 1.945394 CTACGTACCAGCCGTGTAGAT 59.055 52.381 0.00 0.00 39.22 1.98
1976 2476 2.042686 ACGTACCAGCCGTGTAGATA 57.957 50.000 0.00 0.00 37.12 1.98
1979 2479 3.499918 ACGTACCAGCCGTGTAGATATAC 59.500 47.826 0.00 0.00 37.12 1.47
1981 2481 4.931601 CGTACCAGCCGTGTAGATATACTA 59.068 45.833 0.00 0.00 0.00 1.82
2061 2823 4.152402 GCATGTCACTTTCTGTATTGTCGT 59.848 41.667 0.00 0.00 0.00 4.34
2143 2905 9.058174 TCAGATAGTACCAAAAACAAAATTCGA 57.942 29.630 0.00 0.00 0.00 3.71
2161 2923 5.591643 TTCGAGACTAAAACAAGATGCAC 57.408 39.130 0.00 0.00 0.00 4.57
2162 2924 3.994392 TCGAGACTAAAACAAGATGCACC 59.006 43.478 0.00 0.00 0.00 5.01
2163 2925 3.745975 CGAGACTAAAACAAGATGCACCA 59.254 43.478 0.00 0.00 0.00 4.17
2165 2927 4.718961 AGACTAAAACAAGATGCACCAGT 58.281 39.130 0.00 0.00 0.00 4.00
2166 2928 4.757149 AGACTAAAACAAGATGCACCAGTC 59.243 41.667 0.00 0.00 0.00 3.51
2168 2930 2.254546 AAACAAGATGCACCAGTCGA 57.745 45.000 0.00 0.00 0.00 4.20
2170 2932 2.479566 ACAAGATGCACCAGTCGATT 57.520 45.000 0.00 0.00 0.00 3.34
2171 2933 2.079158 ACAAGATGCACCAGTCGATTG 58.921 47.619 0.04 0.04 0.00 2.67
2174 2936 1.278985 AGATGCACCAGTCGATTGGAA 59.721 47.619 31.30 16.99 40.87 3.53
2176 2938 0.955428 TGCACCAGTCGATTGGAAGC 60.955 55.000 31.30 29.51 40.87 3.86
2177 2939 1.970917 GCACCAGTCGATTGGAAGCG 61.971 60.000 31.30 17.18 40.87 4.68
2178 2940 0.389817 CACCAGTCGATTGGAAGCGA 60.390 55.000 31.30 0.00 45.30 4.93
2185 2947 1.546923 TCGATTGGAAGCGACTAACCA 59.453 47.619 0.00 0.00 42.38 3.67
2186 2948 1.659098 CGATTGGAAGCGACTAACCAC 59.341 52.381 0.00 0.00 40.84 4.16
2187 2949 2.007608 GATTGGAAGCGACTAACCACC 58.992 52.381 0.00 0.00 31.87 4.61
2188 2950 0.759959 TTGGAAGCGACTAACCACCA 59.240 50.000 0.00 0.00 31.87 4.17
2192 2954 1.000506 GAAGCGACTAACCACCAGTCA 59.999 52.381 3.65 0.00 42.12 3.41
2193 2955 1.045407 AGCGACTAACCACCAGTCAA 58.955 50.000 3.65 0.00 42.12 3.18
2194 2956 1.623811 AGCGACTAACCACCAGTCAAT 59.376 47.619 3.65 0.00 42.12 2.57
2197 2959 2.742053 CGACTAACCACCAGTCAATTGG 59.258 50.000 5.42 0.00 42.12 3.16
2198 2960 3.556213 CGACTAACCACCAGTCAATTGGA 60.556 47.826 5.42 0.00 42.12 3.53
2212 2974 6.662414 GTCAATTGGACGATAAACATCAGA 57.338 37.500 5.42 0.00 36.65 3.27
2213 2975 7.251704 GTCAATTGGACGATAAACATCAGAT 57.748 36.000 5.42 0.00 36.65 2.90
2214 2976 7.348201 GTCAATTGGACGATAAACATCAGATC 58.652 38.462 5.42 0.00 36.65 2.75
2215 2977 6.483307 TCAATTGGACGATAAACATCAGATCC 59.517 38.462 5.42 0.00 0.00 3.36
2217 2979 2.731976 GGACGATAAACATCAGATCCGC 59.268 50.000 0.00 0.00 0.00 5.54
2218 2980 3.381045 GACGATAAACATCAGATCCGCA 58.619 45.455 0.00 0.00 0.00 5.69
2219 2981 3.123804 ACGATAAACATCAGATCCGCAC 58.876 45.455 0.00 0.00 0.00 5.34
2220 2982 2.153817 CGATAAACATCAGATCCGCACG 59.846 50.000 0.00 0.00 0.00 5.34
2221 2983 2.951457 TAAACATCAGATCCGCACGA 57.049 45.000 0.00 0.00 0.00 4.35
2222 2984 2.315925 AAACATCAGATCCGCACGAT 57.684 45.000 0.00 0.00 0.00 3.73
2229 2991 3.245443 GATCCGCACGATCGTACAA 57.755 52.632 22.26 6.73 38.23 2.41
2231 2993 0.526954 ATCCGCACGATCGTACAACC 60.527 55.000 22.26 6.23 0.00 3.77
2232 2994 1.444724 CCGCACGATCGTACAACCA 60.445 57.895 22.26 0.00 0.00 3.67
2233 2995 1.680105 CCGCACGATCGTACAACCAC 61.680 60.000 22.26 3.80 0.00 4.16
2235 2997 1.005294 GCACGATCGTACAACCACGT 61.005 55.000 22.26 0.00 42.51 4.49
2236 2998 0.979811 CACGATCGTACAACCACGTC 59.020 55.000 22.26 0.00 42.51 4.34
2237 2999 0.877071 ACGATCGTACAACCACGTCT 59.123 50.000 21.32 0.00 42.51 4.18
2238 3000 2.076100 ACGATCGTACAACCACGTCTA 58.924 47.619 21.32 0.00 42.51 2.59
2239 3001 2.679837 ACGATCGTACAACCACGTCTAT 59.320 45.455 21.32 0.00 42.51 1.98
2241 3003 4.512944 ACGATCGTACAACCACGTCTATAT 59.487 41.667 21.32 0.00 42.51 0.86
2243 3005 6.369890 ACGATCGTACAACCACGTCTATATAT 59.630 38.462 21.32 0.00 42.51 0.86
2244 3006 6.681599 CGATCGTACAACCACGTCTATATATG 59.318 42.308 7.03 0.00 42.51 1.78
2245 3007 5.692814 TCGTACAACCACGTCTATATATGC 58.307 41.667 0.00 0.00 42.51 3.14
2246 3008 5.239087 TCGTACAACCACGTCTATATATGCA 59.761 40.000 0.00 0.00 42.51 3.96
2248 3010 5.531122 ACAACCACGTCTATATATGCAGT 57.469 39.130 0.00 0.00 0.00 4.40
2249 3011 5.914033 ACAACCACGTCTATATATGCAGTT 58.086 37.500 0.00 0.00 0.00 3.16
2250 3012 5.983720 ACAACCACGTCTATATATGCAGTTC 59.016 40.000 0.00 0.00 0.00 3.01
2251 3013 4.795268 ACCACGTCTATATATGCAGTTCG 58.205 43.478 0.00 0.00 0.00 3.95
2253 3015 5.220381 CCACGTCTATATATGCAGTTCGTT 58.780 41.667 0.00 0.00 0.00 3.85
2255 3017 6.129168 CCACGTCTATATATGCAGTTCGTTTC 60.129 42.308 0.00 0.00 0.00 2.78
2256 3018 6.416750 CACGTCTATATATGCAGTTCGTTTCA 59.583 38.462 0.00 0.00 0.00 2.69
2257 3019 7.114953 CACGTCTATATATGCAGTTCGTTTCAT 59.885 37.037 0.00 0.00 0.00 2.57
2260 3022 8.642885 GTCTATATATGCAGTTCGTTTCATGAG 58.357 37.037 0.00 0.00 0.00 2.90
2261 3023 6.791887 ATATATGCAGTTCGTTTCATGAGG 57.208 37.500 0.00 0.00 0.00 3.86
2262 3024 2.542020 TGCAGTTCGTTTCATGAGGA 57.458 45.000 0.00 0.00 0.00 3.71
2263 3025 2.844946 TGCAGTTCGTTTCATGAGGAA 58.155 42.857 0.00 0.00 0.00 3.36
2264 3026 2.548057 TGCAGTTCGTTTCATGAGGAAC 59.452 45.455 20.14 20.14 42.01 3.62
2265 3027 2.095718 GCAGTTCGTTTCATGAGGAACC 60.096 50.000 22.33 11.64 42.42 3.62
2266 3028 2.157668 CAGTTCGTTTCATGAGGAACCG 59.842 50.000 22.33 14.44 42.42 4.44
2267 3029 1.463444 GTTCGTTTCATGAGGAACCGG 59.537 52.381 18.33 0.00 41.22 5.28
2268 3030 0.682852 TCGTTTCATGAGGAACCGGT 59.317 50.000 0.00 0.00 41.22 5.28
2269 3031 0.796312 CGTTTCATGAGGAACCGGTG 59.204 55.000 8.52 0.00 37.71 4.94
2271 3033 0.608035 TTTCATGAGGAACCGGTGGC 60.608 55.000 8.52 2.88 34.56 5.01
2272 3034 1.488705 TTCATGAGGAACCGGTGGCT 61.489 55.000 8.52 0.00 0.00 4.75
2273 3035 1.450312 CATGAGGAACCGGTGGCTC 60.450 63.158 8.52 0.83 0.00 4.70
2274 3036 1.918293 ATGAGGAACCGGTGGCTCA 60.918 57.895 8.52 9.70 0.00 4.26
2275 3037 2.047179 GAGGAACCGGTGGCTCAC 60.047 66.667 8.52 0.00 0.00 3.51
2285 3047 3.811702 TGGCTCACCAAGGAGGAG 58.188 61.111 0.00 0.75 45.37 3.69
2286 3048 1.920325 TGGCTCACCAAGGAGGAGG 60.920 63.158 12.14 0.00 45.37 4.30
2287 3049 1.920835 GGCTCACCAAGGAGGAGGT 60.921 63.158 12.14 0.00 41.22 3.85
2291 3053 4.569214 ACCAAGGAGGAGGTGGAG 57.431 61.111 0.00 0.00 41.22 3.86
2293 3055 2.674220 CCAAGGAGGAGGTGGAGGC 61.674 68.421 0.00 0.00 41.22 4.70
2294 3056 2.285743 AAGGAGGAGGTGGAGGCC 60.286 66.667 0.00 0.00 0.00 5.19
2295 3057 2.886636 AAGGAGGAGGTGGAGGCCT 61.887 63.158 3.86 3.86 42.53 5.19
2296 3058 2.285743 GGAGGAGGTGGAGGCCTT 60.286 66.667 6.77 0.00 39.34 4.35
2297 3059 2.371259 GGAGGAGGTGGAGGCCTTC 61.371 68.421 6.77 4.87 39.34 3.46
2300 3062 2.674220 GGAGGTGGAGGCCTTCTGG 61.674 68.421 13.68 0.00 39.34 3.86
2301 3063 1.613630 GAGGTGGAGGCCTTCTGGA 60.614 63.158 13.68 0.00 39.34 3.86
2310 3072 3.396767 CCTTCTGGAGGCAGCAGA 58.603 61.111 0.00 0.00 39.09 4.26
2311 3073 1.681666 CCTTCTGGAGGCAGCAGAA 59.318 57.895 0.00 0.00 39.09 3.02
2314 3076 1.059098 TTCTGGAGGCAGCAGAAGAA 58.941 50.000 0.00 0.00 32.04 2.52
2315 3077 0.612229 TCTGGAGGCAGCAGAAGAAG 59.388 55.000 0.00 0.00 0.00 2.85
2316 3078 1.002868 TGGAGGCAGCAGAAGAAGC 60.003 57.895 0.00 0.00 0.00 3.86
2319 3081 3.130160 GGCAGCAGAAGAAGCCGG 61.130 66.667 0.00 0.00 37.41 6.13
2321 3083 3.494336 CAGCAGAAGAAGCCGGCG 61.494 66.667 23.20 5.73 0.00 6.46
2342 3104 0.794473 CCGAGGACAACGTTAAAGGC 59.206 55.000 0.00 0.00 0.00 4.35
2343 3105 0.437295 CGAGGACAACGTTAAAGGCG 59.563 55.000 0.00 0.00 0.00 5.52
2344 3106 0.794473 GAGGACAACGTTAAAGGCGG 59.206 55.000 0.00 0.00 0.00 6.13
2345 3107 1.208358 GGACAACGTTAAAGGCGGC 59.792 57.895 0.00 0.00 0.00 6.53
2346 3108 1.508808 GGACAACGTTAAAGGCGGCA 61.509 55.000 13.08 0.00 0.00 5.69
2347 3109 0.385098 GACAACGTTAAAGGCGGCAC 60.385 55.000 13.08 0.00 0.00 5.01
2364 3126 4.112341 CGACCGTCGTCACCTCCC 62.112 72.222 12.91 0.00 39.11 4.30
2365 3127 3.756727 GACCGTCGTCACCTCCCC 61.757 72.222 0.00 0.00 38.99 4.81
2369 3131 4.436998 GTCGTCACCTCCCCGCTG 62.437 72.222 0.00 0.00 0.00 5.18
2370 3132 4.988716 TCGTCACCTCCCCGCTGT 62.989 66.667 0.00 0.00 0.00 4.40
2371 3133 4.436998 CGTCACCTCCCCGCTGTC 62.437 72.222 0.00 0.00 0.00 3.51
2372 3134 4.436998 GTCACCTCCCCGCTGTCG 62.437 72.222 0.00 0.00 0.00 4.35
2374 3136 4.135153 CACCTCCCCGCTGTCGAG 62.135 72.222 0.00 0.00 38.10 4.04
2377 3139 3.827898 CTCCCCGCTGTCGAGGTC 61.828 72.222 0.00 0.00 34.91 3.85
2402 3164 2.556792 CGTGCGTCGACTCTGTCT 59.443 61.111 14.70 0.00 42.86 3.41
2405 3167 0.169230 GTGCGTCGACTCTGTCTCAT 59.831 55.000 14.70 0.00 0.00 2.90
2406 3168 0.169009 TGCGTCGACTCTGTCTCATG 59.831 55.000 14.70 0.00 0.00 3.07
2407 3169 0.169230 GCGTCGACTCTGTCTCATGT 59.831 55.000 14.70 0.00 0.00 3.21
2408 3170 1.792273 GCGTCGACTCTGTCTCATGTC 60.792 57.143 14.70 0.00 0.00 3.06
2410 3172 1.087501 TCGACTCTGTCTCATGTCCG 58.912 55.000 0.00 0.00 0.00 4.79
2411 3173 0.805614 CGACTCTGTCTCATGTCCGT 59.194 55.000 0.00 0.00 0.00 4.69
2412 3174 1.200252 CGACTCTGTCTCATGTCCGTT 59.800 52.381 0.00 0.00 0.00 4.44
2413 3175 2.729467 CGACTCTGTCTCATGTCCGTTC 60.729 54.545 0.00 0.00 0.00 3.95
2414 3176 1.200252 ACTCTGTCTCATGTCCGTTCG 59.800 52.381 0.00 0.00 0.00 3.95
2415 3177 1.200252 CTCTGTCTCATGTCCGTTCGT 59.800 52.381 0.00 0.00 0.00 3.85
2416 3178 1.199327 TCTGTCTCATGTCCGTTCGTC 59.801 52.381 0.00 0.00 0.00 4.20
2417 3179 0.109919 TGTCTCATGTCCGTTCGTCG 60.110 55.000 0.00 0.00 39.52 5.12
2418 3180 1.154093 TCTCATGTCCGTTCGTCGC 60.154 57.895 0.00 0.00 38.35 5.19
2419 3181 2.126228 TCATGTCCGTTCGTCGCC 60.126 61.111 0.00 0.00 38.35 5.54
2420 3182 2.126071 CATGTCCGTTCGTCGCCT 60.126 61.111 0.00 0.00 38.35 5.52
2421 3183 2.158959 CATGTCCGTTCGTCGCCTC 61.159 63.158 0.00 0.00 38.35 4.70
2422 3184 3.352338 ATGTCCGTTCGTCGCCTCC 62.352 63.158 0.00 0.00 38.35 4.30
2427 3189 4.047059 GTTCGTCGCCTCCGGACA 62.047 66.667 0.00 0.00 33.95 4.02
2429 3191 2.858862 TTCGTCGCCTCCGGACAAA 61.859 57.895 0.00 0.00 34.56 2.83
2430 3192 2.758770 TTCGTCGCCTCCGGACAAAG 62.759 60.000 0.00 0.00 34.56 2.77
2431 3193 3.119096 GTCGCCTCCGGACAAAGC 61.119 66.667 0.00 0.00 34.56 3.51
2435 3197 2.809601 CCTCCGGACAAAGCGACG 60.810 66.667 0.00 0.00 0.00 5.12
2437 3199 1.801913 CTCCGGACAAAGCGACGAG 60.802 63.158 0.00 0.00 0.00 4.18
2438 3200 2.196382 CTCCGGACAAAGCGACGAGA 62.196 60.000 0.00 0.00 0.00 4.04
2439 3201 1.801913 CCGGACAAAGCGACGAGAG 60.802 63.158 0.00 0.00 0.00 3.20
2440 3202 2.437343 CGGACAAAGCGACGAGAGC 61.437 63.158 0.00 0.00 0.00 4.09
2459 3221 3.357166 GCGCTAGCTAGAATACACAGT 57.643 47.619 25.15 0.00 41.01 3.55
2460 3222 3.046390 GCGCTAGCTAGAATACACAGTG 58.954 50.000 25.15 4.20 41.01 3.66
2461 3223 3.243101 GCGCTAGCTAGAATACACAGTGA 60.243 47.826 25.15 0.00 41.01 3.41
2463 3225 4.735822 CGCTAGCTAGAATACACAGTGAAC 59.264 45.833 25.15 0.24 0.00 3.18
2464 3226 5.651530 GCTAGCTAGAATACACAGTGAACA 58.348 41.667 25.15 0.00 0.00 3.18
2466 3228 6.758886 GCTAGCTAGAATACACAGTGAACATT 59.241 38.462 25.15 3.65 0.00 2.71
2467 3229 7.043059 GCTAGCTAGAATACACAGTGAACATTC 60.043 40.741 25.15 12.22 0.00 2.67
2470 3232 6.540189 GCTAGAATACACAGTGAACATTCCAT 59.460 38.462 7.81 1.98 0.00 3.41
2473 3235 8.498054 AGAATACACAGTGAACATTCCATAAG 57.502 34.615 7.81 0.00 0.00 1.73
2474 3236 7.554118 AGAATACACAGTGAACATTCCATAAGG 59.446 37.037 7.81 0.00 0.00 2.69
2475 3237 4.985538 ACACAGTGAACATTCCATAAGGT 58.014 39.130 7.81 0.00 35.89 3.50
2476 3238 5.385198 ACACAGTGAACATTCCATAAGGTT 58.615 37.500 7.81 0.00 41.99 3.50
2483 3245 6.679327 GAACATTCCATAAGGTTCCTGTAC 57.321 41.667 4.73 0.00 45.94 2.90
2485 3247 2.973694 TCCATAAGGTTCCTGTACGC 57.026 50.000 0.00 0.00 35.89 4.42
2486 3248 1.483415 TCCATAAGGTTCCTGTACGCC 59.517 52.381 0.00 0.00 35.89 5.68
2487 3249 1.485066 CCATAAGGTTCCTGTACGCCT 59.515 52.381 0.00 0.00 0.00 5.52
2488 3250 2.483188 CCATAAGGTTCCTGTACGCCTC 60.483 54.545 0.00 0.00 0.00 4.70
2489 3251 2.226962 TAAGGTTCCTGTACGCCTCT 57.773 50.000 0.00 0.00 0.00 3.69
2492 3254 1.697982 AGGTTCCTGTACGCCTCTTTT 59.302 47.619 0.00 0.00 0.00 2.27
2493 3255 2.105993 AGGTTCCTGTACGCCTCTTTTT 59.894 45.455 0.00 0.00 0.00 1.94
2494 3256 2.483106 GGTTCCTGTACGCCTCTTTTTC 59.517 50.000 0.00 0.00 0.00 2.29
2495 3257 3.400255 GTTCCTGTACGCCTCTTTTTCT 58.600 45.455 0.00 0.00 0.00 2.52
2496 3258 4.562143 GGTTCCTGTACGCCTCTTTTTCTA 60.562 45.833 0.00 0.00 0.00 2.10
2497 3259 5.176592 GTTCCTGTACGCCTCTTTTTCTAT 58.823 41.667 0.00 0.00 0.00 1.98
2498 3260 6.335777 GTTCCTGTACGCCTCTTTTTCTATA 58.664 40.000 0.00 0.00 0.00 1.31
2499 3261 6.145338 TCCTGTACGCCTCTTTTTCTATAG 57.855 41.667 0.00 0.00 0.00 1.31
2500 3262 5.068723 TCCTGTACGCCTCTTTTTCTATAGG 59.931 44.000 0.00 0.00 0.00 2.57
2501 3263 5.163437 CCTGTACGCCTCTTTTTCTATAGGT 60.163 44.000 0.00 0.00 0.00 3.08
2502 3264 6.290294 TGTACGCCTCTTTTTCTATAGGTT 57.710 37.500 0.00 0.00 0.00 3.50
2503 3265 6.704310 TGTACGCCTCTTTTTCTATAGGTTT 58.296 36.000 0.00 0.00 0.00 3.27
2504 3266 7.163441 TGTACGCCTCTTTTTCTATAGGTTTT 58.837 34.615 0.00 0.00 0.00 2.43
2505 3267 6.496338 ACGCCTCTTTTTCTATAGGTTTTG 57.504 37.500 0.00 0.00 0.00 2.44
2506 3268 5.414765 ACGCCTCTTTTTCTATAGGTTTTGG 59.585 40.000 0.00 0.00 0.00 3.28
2507 3269 5.163652 CGCCTCTTTTTCTATAGGTTTTGGG 60.164 44.000 0.00 0.00 0.00 4.12
2509 3271 6.436218 GCCTCTTTTTCTATAGGTTTTGGGAA 59.564 38.462 0.00 0.00 0.00 3.97
2511 3273 7.670140 CCTCTTTTTCTATAGGTTTTGGGAACT 59.330 37.037 0.00 0.00 0.00 3.01
2625 3722 6.981762 ATGTTTGTGTTTTGAAAATGCTCA 57.018 29.167 0.00 0.00 0.00 4.26
2681 3778 6.316640 TGTTCACAGTTTGAAATTAGGTTCGA 59.683 34.615 0.00 0.00 46.09 3.71
2687 3784 8.410141 ACAGTTTGAAATTAGGTTCGAAAATGA 58.590 29.630 0.00 0.00 33.62 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 117 3.868754 GCGGAACACTCCTAGAATTTGGT 60.869 47.826 0.00 0.00 39.93 3.67
140 143 6.426646 AATAGGGAAGGCACTAGTTCTATG 57.573 41.667 0.00 0.00 38.49 2.23
142 145 5.533903 CGTAATAGGGAAGGCACTAGTTCTA 59.466 44.000 0.00 0.00 38.49 2.10
144 147 4.340381 TCGTAATAGGGAAGGCACTAGTTC 59.660 45.833 0.00 0.00 38.49 3.01
187 191 1.608590 CAGAACACTCAAAATGGCGGT 59.391 47.619 0.00 0.00 0.00 5.68
264 274 7.649705 TCATCATTAGATTTCTAGCGTTGAGAC 59.350 37.037 0.00 0.00 30.20 3.36
270 280 8.492673 TGTTTTCATCATTAGATTTCTAGCGT 57.507 30.769 0.00 0.00 30.20 5.07
384 395 6.677920 GCACTGTATCATTTATCACAACCCAC 60.678 42.308 0.00 0.00 0.00 4.61
385 396 5.356751 GCACTGTATCATTTATCACAACCCA 59.643 40.000 0.00 0.00 0.00 4.51
403 414 1.071228 TGCTGAGAAGTGATGCACTGT 59.929 47.619 0.22 0.00 44.62 3.55
417 428 3.055963 ACTCTCATTTCTCCTGTGCTGAG 60.056 47.826 0.00 0.00 33.16 3.35
447 458 6.700520 ACGAAAAGAGTATTCTTCGACTTTGT 59.299 34.615 14.14 6.73 42.80 2.83
453 464 6.698329 TGAACAACGAAAAGAGTATTCTTCGA 59.302 34.615 14.14 0.00 42.80 3.71
454 465 6.873656 TGAACAACGAAAAGAGTATTCTTCG 58.126 36.000 0.40 4.55 42.80 3.79
455 466 9.498307 TTTTGAACAACGAAAAGAGTATTCTTC 57.502 29.630 0.40 0.00 42.80 2.87
460 471 7.090953 TGGTTTTGAACAACGAAAAGAGTAT 57.909 32.000 0.00 0.00 34.18 2.12
491 507 0.391597 AGCTTTCACCCGAAGTTCGA 59.608 50.000 26.37 3.38 43.74 3.71
521 538 1.196808 GCGCCGAAATGAAAACAGAGA 59.803 47.619 0.00 0.00 0.00 3.10
622 649 1.331680 GCATGCGTACATTCGTTACCG 60.332 52.381 0.00 0.00 32.87 4.02
623 650 1.661617 TGCATGCGTACATTCGTTACC 59.338 47.619 14.09 0.00 32.87 2.85
624 651 2.347452 ACTGCATGCGTACATTCGTTAC 59.653 45.455 14.09 0.00 32.87 2.50
625 652 2.347150 CACTGCATGCGTACATTCGTTA 59.653 45.455 14.09 0.00 32.87 3.18
626 653 1.128507 CACTGCATGCGTACATTCGTT 59.871 47.619 14.09 0.00 32.87 3.85
627 654 0.721154 CACTGCATGCGTACATTCGT 59.279 50.000 14.09 0.00 32.87 3.85
628 655 0.587242 GCACTGCATGCGTACATTCG 60.587 55.000 14.09 2.65 46.55 3.34
629 656 3.224955 GCACTGCATGCGTACATTC 57.775 52.632 14.09 0.00 46.55 2.67
763 813 2.516930 GCATGCTGGGGCGTATGT 60.517 61.111 11.37 0.00 42.25 2.29
892 948 2.159071 TGCCCTTTTATACGCGCTAGAA 60.159 45.455 5.73 0.00 0.00 2.10
893 955 1.409790 TGCCCTTTTATACGCGCTAGA 59.590 47.619 5.73 0.00 0.00 2.43
895 957 2.139917 CATGCCCTTTTATACGCGCTA 58.860 47.619 5.73 0.00 0.00 4.26
900 962 2.290641 GGACAGCATGCCCTTTTATACG 59.709 50.000 15.66 0.00 42.53 3.06
959 1300 1.215244 CTTGATCGACGAGCATGCAT 58.785 50.000 21.98 4.40 0.00 3.96
977 1318 4.970662 TCGACGTAGGTAGCAATTAACT 57.029 40.909 0.00 0.00 32.82 2.24
985 1326 1.135460 GCCCATATCGACGTAGGTAGC 60.135 57.143 0.00 0.00 0.00 3.58
987 1328 2.039480 AGAGCCCATATCGACGTAGGTA 59.961 50.000 0.00 0.00 0.00 3.08
988 1329 1.202903 AGAGCCCATATCGACGTAGGT 60.203 52.381 0.00 0.00 0.00 3.08
993 1361 1.239347 TGAGAGAGCCCATATCGACG 58.761 55.000 0.00 0.00 0.00 5.12
1104 1485 7.315142 ACAAATTATGAATCTTGCAACGTGAT 58.685 30.769 0.00 0.00 0.00 3.06
1127 1508 3.998913 TGGATGCCATAACAGAAGACA 57.001 42.857 0.00 0.00 0.00 3.41
1129 1510 4.508551 ACATGGATGCCATAACAGAAGA 57.491 40.909 0.00 0.00 43.15 2.87
1284 1676 1.154301 GCGAACCGGTTACGTACGA 60.154 57.895 27.76 2.43 38.78 3.43
1310 1702 1.348250 CAAATCCGACGGATGCACG 59.652 57.895 29.32 14.20 42.27 5.34
1342 1734 4.935205 AGTACGCATTTGACAAGCTTGATA 59.065 37.500 32.50 17.21 0.00 2.15
1376 1770 2.153645 CCAACACATGCAAGCAGAGTA 58.846 47.619 0.00 0.00 0.00 2.59
1476 1870 1.638388 CGTCACCGTCCACGCTAGTA 61.638 60.000 0.00 0.00 38.18 1.82
1478 1878 2.202440 CGTCACCGTCCACGCTAG 60.202 66.667 0.00 0.00 38.18 3.42
1555 1964 6.801539 TTCATGTGTGAACTCAATAACCTC 57.198 37.500 0.00 0.00 39.36 3.85
1576 1985 7.972277 GGATCCATGCATGTTATGAATATGTTC 59.028 37.037 24.58 9.60 33.13 3.18
1577 1986 7.452189 TGGATCCATGCATGTTATGAATATGTT 59.548 33.333 24.58 1.22 33.13 2.71
1578 1987 6.949463 TGGATCCATGCATGTTATGAATATGT 59.051 34.615 24.58 0.18 33.13 2.29
1579 1988 7.399245 TGGATCCATGCATGTTATGAATATG 57.601 36.000 24.58 5.98 33.64 1.78
1600 2009 8.119736 ACGTGATCGATACATGTACACATGGA 62.120 42.308 22.66 16.88 46.85 3.41
1601 2010 4.382754 CGTGATCGATACATGTACACATGG 59.617 45.833 22.66 8.22 46.99 3.66
1603 2012 5.183014 ACGTGATCGATACATGTACACAT 57.817 39.130 18.31 5.63 40.62 3.21
1604 2013 4.625972 ACGTGATCGATACATGTACACA 57.374 40.909 18.31 8.81 40.62 3.72
1608 2017 3.364267 GCCGTACGTGATCGATACATGTA 60.364 47.826 15.21 18.14 38.28 2.29
1609 2018 2.603892 GCCGTACGTGATCGATACATGT 60.604 50.000 15.21 19.54 40.08 3.21
1610 2019 1.976728 GCCGTACGTGATCGATACATG 59.023 52.381 15.21 6.70 40.62 3.21
1611 2020 1.878088 AGCCGTACGTGATCGATACAT 59.122 47.619 15.21 0.00 40.62 2.29
1612 2021 1.003223 CAGCCGTACGTGATCGATACA 60.003 52.381 15.21 0.00 40.62 2.29
1613 2022 1.662309 CCAGCCGTACGTGATCGATAC 60.662 57.143 15.21 0.00 40.62 2.24
1614 2023 0.589708 CCAGCCGTACGTGATCGATA 59.410 55.000 15.21 0.00 40.62 2.92
1615 2024 1.359117 CCAGCCGTACGTGATCGAT 59.641 57.895 15.21 0.00 40.62 3.59
1616 2025 2.042259 ACCAGCCGTACGTGATCGA 61.042 57.895 15.21 0.00 40.62 3.59
1617 2026 1.872234 CACCAGCCGTACGTGATCG 60.872 63.158 15.21 0.00 43.34 3.69
1618 2027 2.165301 GCACCAGCCGTACGTGATC 61.165 63.158 15.21 0.32 33.58 2.92
1619 2028 2.125673 GCACCAGCCGTACGTGAT 60.126 61.111 15.21 1.28 33.58 3.06
1620 2029 4.710695 CGCACCAGCCGTACGTGA 62.711 66.667 15.21 0.00 37.52 4.35
1621 2030 3.613952 TACGCACCAGCCGTACGTG 62.614 63.158 15.21 6.71 44.21 4.49
1622 2031 2.918345 TTACGCACCAGCCGTACGT 61.918 57.895 15.21 5.28 46.20 3.57
1623 2032 2.126385 TTACGCACCAGCCGTACG 60.126 61.111 8.69 8.69 37.26 3.67
1624 2033 2.438954 CGTTACGCACCAGCCGTAC 61.439 63.158 0.00 0.00 37.52 3.67
1625 2034 1.581727 TACGTTACGCACCAGCCGTA 61.582 55.000 4.09 0.00 36.55 4.02
1626 2035 2.918345 TACGTTACGCACCAGCCGT 61.918 57.895 4.09 0.00 38.25 5.68
1627 2036 2.126385 TACGTTACGCACCAGCCG 60.126 61.111 4.09 0.00 37.52 5.52
1628 2037 2.096442 GGTACGTTACGCACCAGCC 61.096 63.158 20.80 3.59 42.28 4.85
1629 2038 0.668401 AAGGTACGTTACGCACCAGC 60.668 55.000 26.23 9.59 44.83 4.85
1630 2039 2.253603 GTAAGGTACGTTACGCACCAG 58.746 52.381 26.23 0.00 44.83 4.00
1631 2040 1.067915 GGTAAGGTACGTTACGCACCA 60.068 52.381 26.23 6.51 44.83 4.17
1632 2041 1.202348 AGGTAAGGTACGTTACGCACC 59.798 52.381 24.54 18.47 42.96 5.01
1633 2042 2.636768 AGGTAAGGTACGTTACGCAC 57.363 50.000 24.54 15.06 34.25 5.34
1634 2043 2.097466 GCTAGGTAAGGTACGTTACGCA 59.903 50.000 24.54 16.54 34.25 5.24
1635 2044 2.097466 TGCTAGGTAAGGTACGTTACGC 59.903 50.000 24.54 22.36 34.25 4.42
1636 2045 4.035558 TCATGCTAGGTAAGGTACGTTACG 59.964 45.833 24.54 15.78 34.25 3.18
1637 2046 5.505173 TCATGCTAGGTAAGGTACGTTAC 57.495 43.478 23.88 23.88 32.90 2.50
1638 2047 4.037208 GCTCATGCTAGGTAAGGTACGTTA 59.963 45.833 3.93 3.93 36.03 3.18
1639 2048 3.181478 GCTCATGCTAGGTAAGGTACGTT 60.181 47.826 6.03 6.03 36.03 3.99
1640 2049 2.361438 GCTCATGCTAGGTAAGGTACGT 59.639 50.000 0.00 0.00 36.03 3.57
1641 2050 3.014604 GCTCATGCTAGGTAAGGTACG 57.985 52.381 0.00 0.00 36.03 3.67
1671 2080 4.293415 AGCTCATTTCGCAAACAGAAAAG 58.707 39.130 0.00 0.00 40.44 2.27
1676 2087 3.004024 ACAAGCTCATTTCGCAAACAG 57.996 42.857 0.00 0.00 0.00 3.16
1979 2479 5.064452 CCACTCCAAGTAGTACTGTACGTAG 59.936 48.000 11.97 0.00 0.00 3.51
1981 2481 3.755378 CCACTCCAAGTAGTACTGTACGT 59.245 47.826 11.97 0.00 0.00 3.57
1982 2482 3.755378 ACCACTCCAAGTAGTACTGTACG 59.245 47.826 11.97 0.00 0.00 3.67
1983 2483 4.082354 CCACCACTCCAAGTAGTACTGTAC 60.082 50.000 9.93 9.93 0.00 2.90
1985 2485 2.897969 CCACCACTCCAAGTAGTACTGT 59.102 50.000 5.39 0.00 0.00 3.55
1986 2486 2.353803 GCCACCACTCCAAGTAGTACTG 60.354 54.545 5.39 0.00 0.00 2.74
1987 2487 1.900486 GCCACCACTCCAAGTAGTACT 59.100 52.381 0.00 0.00 0.00 2.73
1988 2488 1.900486 AGCCACCACTCCAAGTAGTAC 59.100 52.381 0.00 0.00 0.00 2.73
1989 2489 2.320681 AGCCACCACTCCAAGTAGTA 57.679 50.000 0.00 0.00 0.00 1.82
1990 2490 1.435256 AAGCCACCACTCCAAGTAGT 58.565 50.000 0.00 0.00 0.00 2.73
1991 2491 2.154462 CAAAGCCACCACTCCAAGTAG 58.846 52.381 0.00 0.00 0.00 2.57
1993 2493 1.109323 GCAAAGCCACCACTCCAAGT 61.109 55.000 0.00 0.00 0.00 3.16
2143 2905 4.718961 ACTGGTGCATCTTGTTTTAGTCT 58.281 39.130 0.00 0.00 0.00 3.24
2161 2923 4.910956 TCGCTTCCAATCGACTGG 57.089 55.556 6.56 6.56 37.87 4.00
2165 2927 1.546923 TGGTTAGTCGCTTCCAATCGA 59.453 47.619 0.00 0.00 0.00 3.59
2166 2928 1.659098 GTGGTTAGTCGCTTCCAATCG 59.341 52.381 0.00 0.00 0.00 3.34
2168 2930 1.349688 TGGTGGTTAGTCGCTTCCAAT 59.650 47.619 0.00 0.00 0.00 3.16
2170 2932 0.320374 CTGGTGGTTAGTCGCTTCCA 59.680 55.000 0.00 0.00 0.00 3.53
2171 2933 0.320697 ACTGGTGGTTAGTCGCTTCC 59.679 55.000 0.00 0.00 0.00 3.46
2174 2936 1.045407 TTGACTGGTGGTTAGTCGCT 58.955 50.000 0.00 0.00 45.82 4.93
2176 2938 2.742053 CCAATTGACTGGTGGTTAGTCG 59.258 50.000 7.12 0.00 45.82 4.18
2177 2939 3.751698 GTCCAATTGACTGGTGGTTAGTC 59.248 47.826 7.12 0.00 43.73 2.59
2178 2940 3.751518 GTCCAATTGACTGGTGGTTAGT 58.248 45.455 7.12 0.00 41.03 2.24
2179 2941 2.742053 CGTCCAATTGACTGGTGGTTAG 59.258 50.000 7.12 0.00 42.13 2.34
2180 2942 2.369203 TCGTCCAATTGACTGGTGGTTA 59.631 45.455 7.12 0.00 42.13 2.85
2181 2943 1.142060 TCGTCCAATTGACTGGTGGTT 59.858 47.619 7.12 0.00 42.13 3.67
2183 2945 2.113860 ATCGTCCAATTGACTGGTGG 57.886 50.000 7.12 0.00 42.13 4.61
2185 2947 4.647611 TGTTTATCGTCCAATTGACTGGT 58.352 39.130 7.12 0.00 42.13 4.00
2186 2948 5.353956 TGATGTTTATCGTCCAATTGACTGG 59.646 40.000 7.12 0.00 42.13 4.00
2187 2949 6.313658 TCTGATGTTTATCGTCCAATTGACTG 59.686 38.462 7.12 0.00 42.13 3.51
2188 2950 6.406370 TCTGATGTTTATCGTCCAATTGACT 58.594 36.000 7.12 0.00 42.13 3.41
2192 2954 5.466728 CGGATCTGATGTTTATCGTCCAATT 59.533 40.000 0.00 0.00 36.04 2.32
2193 2955 4.991056 CGGATCTGATGTTTATCGTCCAAT 59.009 41.667 0.00 0.00 36.04 3.16
2194 2956 4.368315 CGGATCTGATGTTTATCGTCCAA 58.632 43.478 0.00 0.00 36.04 3.53
2197 2959 3.182572 GTGCGGATCTGATGTTTATCGTC 59.817 47.826 5.48 0.00 36.04 4.20
2198 2960 3.123804 GTGCGGATCTGATGTTTATCGT 58.876 45.455 5.48 0.00 36.04 3.73
2199 2961 2.153817 CGTGCGGATCTGATGTTTATCG 59.846 50.000 5.48 0.00 36.04 2.92
2200 2962 3.381045 TCGTGCGGATCTGATGTTTATC 58.619 45.455 5.48 0.00 0.00 1.75
2201 2963 3.452755 TCGTGCGGATCTGATGTTTAT 57.547 42.857 5.48 0.00 0.00 1.40
2202 2964 2.951457 TCGTGCGGATCTGATGTTTA 57.049 45.000 5.48 0.00 0.00 2.01
2203 2965 2.205074 GATCGTGCGGATCTGATGTTT 58.795 47.619 5.48 0.00 46.66 2.83
2204 2966 1.858091 GATCGTGCGGATCTGATGTT 58.142 50.000 5.48 0.00 46.66 2.71
2205 2967 3.577231 GATCGTGCGGATCTGATGT 57.423 52.632 5.48 0.00 46.66 3.06
2211 2973 0.844503 GTTGTACGATCGTGCGGATC 59.155 55.000 30.23 15.56 46.70 3.36
2212 2974 0.526954 GGTTGTACGATCGTGCGGAT 60.527 55.000 30.23 4.85 38.35 4.18
2213 2975 1.153978 GGTTGTACGATCGTGCGGA 60.154 57.895 30.23 18.12 33.40 5.54
2214 2976 1.444724 TGGTTGTACGATCGTGCGG 60.445 57.895 30.23 0.00 33.40 5.69
2215 2977 1.700029 GTGGTTGTACGATCGTGCG 59.300 57.895 30.23 0.00 33.40 5.34
2217 2979 0.979811 GACGTGGTTGTACGATCGTG 59.020 55.000 30.23 13.30 46.46 4.35
2218 2980 0.877071 AGACGTGGTTGTACGATCGT 59.123 50.000 25.94 25.94 46.46 3.73
2219 2981 2.811902 TAGACGTGGTTGTACGATCG 57.188 50.000 14.88 14.88 46.46 3.69
2220 2982 6.468319 GCATATATAGACGTGGTTGTACGATC 59.532 42.308 0.00 0.00 46.46 3.69
2221 2983 6.072342 TGCATATATAGACGTGGTTGTACGAT 60.072 38.462 0.00 0.00 46.46 3.73
2222 2984 5.239087 TGCATATATAGACGTGGTTGTACGA 59.761 40.000 0.00 0.00 46.46 3.43
2224 2986 6.444633 ACTGCATATATAGACGTGGTTGTAC 58.555 40.000 0.00 0.00 0.00 2.90
2226 2988 5.531122 ACTGCATATATAGACGTGGTTGT 57.469 39.130 0.00 0.00 0.00 3.32
2227 2989 5.117135 CGAACTGCATATATAGACGTGGTTG 59.883 44.000 0.00 0.00 0.00 3.77
2228 2990 5.220381 CGAACTGCATATATAGACGTGGTT 58.780 41.667 0.00 0.00 0.00 3.67
2229 2991 4.277672 ACGAACTGCATATATAGACGTGGT 59.722 41.667 0.00 0.00 32.96 4.16
2231 2993 6.416750 TGAAACGAACTGCATATATAGACGTG 59.583 38.462 0.00 0.00 33.79 4.49
2232 2994 6.500910 TGAAACGAACTGCATATATAGACGT 58.499 36.000 0.00 0.00 34.42 4.34
2233 2995 6.986424 TGAAACGAACTGCATATATAGACG 57.014 37.500 0.00 0.00 0.00 4.18
2235 2997 7.814587 CCTCATGAAACGAACTGCATATATAGA 59.185 37.037 0.00 0.00 0.00 1.98
2236 2998 7.814587 TCCTCATGAAACGAACTGCATATATAG 59.185 37.037 0.00 0.00 0.00 1.31
2237 2999 7.666623 TCCTCATGAAACGAACTGCATATATA 58.333 34.615 0.00 0.00 0.00 0.86
2238 3000 6.524734 TCCTCATGAAACGAACTGCATATAT 58.475 36.000 0.00 0.00 0.00 0.86
2239 3001 5.912892 TCCTCATGAAACGAACTGCATATA 58.087 37.500 0.00 0.00 0.00 0.86
2241 3003 4.200838 TCCTCATGAAACGAACTGCATA 57.799 40.909 0.00 0.00 0.00 3.14
2243 3005 2.542020 TCCTCATGAAACGAACTGCA 57.458 45.000 0.00 0.00 0.00 4.41
2244 3006 2.095718 GGTTCCTCATGAAACGAACTGC 60.096 50.000 20.68 8.87 35.90 4.40
2245 3007 3.813529 GGTTCCTCATGAAACGAACTG 57.186 47.619 20.68 0.18 35.90 3.16
2251 3013 1.165270 CCACCGGTTCCTCATGAAAC 58.835 55.000 2.97 0.00 37.31 2.78
2253 3015 1.002624 GCCACCGGTTCCTCATGAA 60.003 57.895 2.97 0.00 0.00 2.57
2255 3017 1.450312 GAGCCACCGGTTCCTCATG 60.450 63.158 20.87 3.06 0.00 3.07
2256 3018 1.918293 TGAGCCACCGGTTCCTCAT 60.918 57.895 23.38 1.16 31.76 2.90
2257 3019 2.525629 TGAGCCACCGGTTCCTCA 60.526 61.111 23.38 23.38 31.76 3.86
2267 3029 1.298014 CTCCTCCTTGGTGAGCCAC 59.702 63.158 0.00 0.00 46.01 5.01
2268 3030 1.920325 CCTCCTCCTTGGTGAGCCA 60.920 63.158 4.31 0.00 44.38 4.75
2269 3031 1.920835 ACCTCCTCCTTGGTGAGCC 60.921 63.158 0.00 0.00 34.90 4.70
2274 3036 1.229658 CCTCCACCTCCTCCTTGGT 60.230 63.158 0.00 0.00 36.96 3.67
2275 3037 2.674220 GCCTCCACCTCCTCCTTGG 61.674 68.421 0.00 0.00 37.10 3.61
2277 3039 2.285743 GGCCTCCACCTCCTCCTT 60.286 66.667 0.00 0.00 0.00 3.36
2278 3040 2.831394 GAAGGCCTCCACCTCCTCCT 62.831 65.000 5.23 0.00 39.93 3.69
2280 3042 1.306568 AGAAGGCCTCCACCTCCTC 60.307 63.158 5.23 0.00 39.93 3.71
2281 3043 1.614824 CAGAAGGCCTCCACCTCCT 60.615 63.158 5.23 0.00 39.93 3.69
2283 3045 1.613630 TCCAGAAGGCCTCCACCTC 60.614 63.158 5.23 0.00 39.93 3.85
2285 3047 2.674220 CCTCCAGAAGGCCTCCACC 61.674 68.421 5.23 0.00 38.67 4.61
2286 3048 2.993853 CCTCCAGAAGGCCTCCAC 59.006 66.667 5.23 0.25 38.67 4.02
2293 3055 1.681666 TTCTGCTGCCTCCAGAAGG 59.318 57.895 0.00 0.00 43.84 3.46
2295 3057 1.002888 CTTCTTCTGCTGCCTCCAGAA 59.997 52.381 0.00 9.51 44.54 3.02
2296 3058 0.612229 CTTCTTCTGCTGCCTCCAGA 59.388 55.000 0.00 0.00 41.77 3.86
2297 3059 1.025647 GCTTCTTCTGCTGCCTCCAG 61.026 60.000 0.00 0.00 42.13 3.86
2300 3062 2.105466 CGGCTTCTTCTGCTGCCTC 61.105 63.158 0.00 0.00 42.90 4.70
2301 3063 2.046507 CGGCTTCTTCTGCTGCCT 60.047 61.111 0.00 0.00 42.90 4.75
2303 3065 3.808656 GCCGGCTTCTTCTGCTGC 61.809 66.667 22.15 0.00 35.62 5.25
2304 3066 3.494336 CGCCGGCTTCTTCTGCTG 61.494 66.667 26.68 0.00 36.63 4.41
2319 3081 3.919973 TAACGTTGTCCTCGGGCGC 62.920 63.158 11.99 0.00 0.00 6.53
2321 3083 0.794473 CTTTAACGTTGTCCTCGGGC 59.206 55.000 11.99 0.00 0.00 6.13
2323 3085 0.794473 GCCTTTAACGTTGTCCTCGG 59.206 55.000 11.99 3.98 0.00 4.63
2324 3086 0.437295 CGCCTTTAACGTTGTCCTCG 59.563 55.000 11.99 5.43 0.00 4.63
2325 3087 0.794473 CCGCCTTTAACGTTGTCCTC 59.206 55.000 11.99 0.00 0.00 3.71
2326 3088 1.232621 GCCGCCTTTAACGTTGTCCT 61.233 55.000 11.99 0.00 0.00 3.85
2327 3089 1.208358 GCCGCCTTTAACGTTGTCC 59.792 57.895 11.99 0.00 0.00 4.02
2328 3090 0.385098 GTGCCGCCTTTAACGTTGTC 60.385 55.000 11.99 0.00 0.00 3.18
2329 3091 1.650363 GTGCCGCCTTTAACGTTGT 59.350 52.632 11.99 0.00 0.00 3.32
2330 3092 1.439693 CGTGCCGCCTTTAACGTTG 60.440 57.895 11.99 0.00 0.00 4.10
2331 3093 1.594836 TCGTGCCGCCTTTAACGTT 60.595 52.632 5.88 5.88 37.32 3.99
2333 3095 2.472934 GTCGTGCCGCCTTTAACG 59.527 61.111 0.00 0.00 37.38 3.18
2347 3109 4.112341 GGGAGGTGACGACGGTCG 62.112 72.222 27.33 27.33 46.49 4.79
2348 3110 3.756727 GGGGAGGTGACGACGGTC 61.757 72.222 0.00 0.00 43.71 4.79
2384 3146 3.166630 GACAGAGTCGACGCACGC 61.167 66.667 21.54 5.86 42.26 5.34
2386 3148 0.169230 ATGAGACAGAGTCGACGCAC 59.831 55.000 21.54 11.59 37.67 5.34
2387 3149 0.169009 CATGAGACAGAGTCGACGCA 59.831 55.000 21.54 7.37 37.67 5.24
2388 3150 0.169230 ACATGAGACAGAGTCGACGC 59.831 55.000 11.72 11.72 37.67 5.19
2389 3151 1.202087 GGACATGAGACAGAGTCGACG 60.202 57.143 10.46 0.00 37.67 5.12
2390 3152 1.202087 CGGACATGAGACAGAGTCGAC 60.202 57.143 7.70 7.70 37.67 4.20
2391 3153 1.087501 CGGACATGAGACAGAGTCGA 58.912 55.000 0.00 0.00 37.67 4.20
2392 3154 0.805614 ACGGACATGAGACAGAGTCG 59.194 55.000 0.00 0.00 37.67 4.18
2393 3155 2.729467 CGAACGGACATGAGACAGAGTC 60.729 54.545 0.00 0.00 0.00 3.36
2394 3156 1.200252 CGAACGGACATGAGACAGAGT 59.800 52.381 0.00 0.00 0.00 3.24
2395 3157 1.200252 ACGAACGGACATGAGACAGAG 59.800 52.381 0.00 0.00 0.00 3.35
2396 3158 1.199327 GACGAACGGACATGAGACAGA 59.801 52.381 0.00 0.00 0.00 3.41
2397 3159 1.618861 GACGAACGGACATGAGACAG 58.381 55.000 0.00 0.00 0.00 3.51
2399 3161 1.403972 GCGACGAACGGACATGAGAC 61.404 60.000 0.00 0.00 42.83 3.36
2402 3164 2.126228 GGCGACGAACGGACATGA 60.126 61.111 0.00 0.00 42.83 3.07
2405 3167 4.047059 GGAGGCGACGAACGGACA 62.047 66.667 0.00 0.00 42.83 4.02
2419 3181 1.801913 CTCGTCGCTTTGTCCGGAG 60.802 63.158 3.06 0.00 0.00 4.63
2420 3182 2.196382 CTCTCGTCGCTTTGTCCGGA 62.196 60.000 0.00 0.00 0.00 5.14
2421 3183 1.801913 CTCTCGTCGCTTTGTCCGG 60.802 63.158 0.00 0.00 0.00 5.14
2422 3184 2.437343 GCTCTCGTCGCTTTGTCCG 61.437 63.158 0.00 0.00 0.00 4.79
2423 3185 2.437343 CGCTCTCGTCGCTTTGTCC 61.437 63.158 0.00 0.00 0.00 4.02
2430 3192 2.757946 CTAGCTAGCGCTCTCGTCGC 62.758 65.000 16.34 8.42 45.15 5.19
2431 3193 1.203065 CTAGCTAGCGCTCTCGTCG 59.797 63.158 16.34 0.00 45.15 5.12
2433 3195 1.600023 ATTCTAGCTAGCGCTCTCGT 58.400 50.000 16.34 0.00 45.15 4.18
2435 3197 3.251245 TGTGTATTCTAGCTAGCGCTCTC 59.749 47.826 16.34 7.01 45.15 3.20
2437 3199 3.003897 ACTGTGTATTCTAGCTAGCGCTC 59.996 47.826 16.34 0.00 45.15 5.03
2439 3201 3.046390 CACTGTGTATTCTAGCTAGCGC 58.954 50.000 16.35 0.00 0.00 5.92
2440 3202 4.553756 TCACTGTGTATTCTAGCTAGCG 57.446 45.455 16.35 0.00 0.00 4.26
2443 3205 7.093509 TGGAATGTTCACTGTGTATTCTAGCTA 60.094 37.037 21.77 0.00 0.00 3.32
2445 3207 5.874810 TGGAATGTTCACTGTGTATTCTAGC 59.125 40.000 21.77 13.25 0.00 3.42
2446 3208 9.599866 TTATGGAATGTTCACTGTGTATTCTAG 57.400 33.333 21.77 0.00 0.00 2.43
2447 3209 9.599866 CTTATGGAATGTTCACTGTGTATTCTA 57.400 33.333 21.77 19.15 0.00 2.10
2449 3211 7.336931 ACCTTATGGAATGTTCACTGTGTATTC 59.663 37.037 18.02 18.02 37.04 1.75
2450 3212 7.175104 ACCTTATGGAATGTTCACTGTGTATT 58.825 34.615 7.79 7.41 37.04 1.89
2452 3214 6.121776 ACCTTATGGAATGTTCACTGTGTA 57.878 37.500 7.79 0.00 37.04 2.90
2455 3217 5.010282 GGAACCTTATGGAATGTTCACTGT 58.990 41.667 0.81 0.00 40.20 3.55
2458 3220 5.010282 ACAGGAACCTTATGGAATGTTCAC 58.990 41.667 0.81 0.00 40.20 3.18
2459 3221 5.255397 ACAGGAACCTTATGGAATGTTCA 57.745 39.130 0.81 0.00 40.20 3.18
2460 3222 5.293569 CGTACAGGAACCTTATGGAATGTTC 59.706 44.000 0.81 0.00 38.67 3.18
2461 3223 5.183228 CGTACAGGAACCTTATGGAATGTT 58.817 41.667 0.81 0.00 37.04 2.71
2463 3225 3.560068 GCGTACAGGAACCTTATGGAATG 59.440 47.826 0.81 0.00 37.04 2.67
2464 3226 3.433173 GGCGTACAGGAACCTTATGGAAT 60.433 47.826 0.81 0.00 37.04 3.01
2466 3228 1.483415 GGCGTACAGGAACCTTATGGA 59.517 52.381 0.81 0.00 37.04 3.41
2467 3229 1.485066 AGGCGTACAGGAACCTTATGG 59.515 52.381 0.00 0.00 39.83 2.74
2470 3232 2.226962 AGAGGCGTACAGGAACCTTA 57.773 50.000 0.00 0.00 30.95 2.69
2473 3235 2.180432 AAAAGAGGCGTACAGGAACC 57.820 50.000 0.00 0.00 0.00 3.62
2474 3236 3.400255 AGAAAAAGAGGCGTACAGGAAC 58.600 45.455 0.00 0.00 0.00 3.62
2475 3237 3.764237 AGAAAAAGAGGCGTACAGGAA 57.236 42.857 0.00 0.00 0.00 3.36
2476 3238 5.068723 CCTATAGAAAAAGAGGCGTACAGGA 59.931 44.000 0.00 0.00 0.00 3.86
2477 3239 5.163437 ACCTATAGAAAAAGAGGCGTACAGG 60.163 44.000 0.00 0.00 31.81 4.00
2478 3240 5.903810 ACCTATAGAAAAAGAGGCGTACAG 58.096 41.667 0.00 0.00 31.81 2.74
2479 3241 5.927281 ACCTATAGAAAAAGAGGCGTACA 57.073 39.130 0.00 0.00 31.81 2.90
2481 3243 6.596497 CCAAAACCTATAGAAAAAGAGGCGTA 59.404 38.462 0.00 0.00 31.81 4.42
2483 3245 5.163652 CCCAAAACCTATAGAAAAAGAGGCG 60.164 44.000 0.00 0.00 31.81 5.52
2485 3247 7.670140 AGTTCCCAAAACCTATAGAAAAAGAGG 59.330 37.037 0.00 0.00 35.05 3.69
2486 3248 8.637196 AGTTCCCAAAACCTATAGAAAAAGAG 57.363 34.615 0.00 0.00 0.00 2.85
2492 3254 9.734984 CTTTCTAAGTTCCCAAAACCTATAGAA 57.265 33.333 0.00 0.00 0.00 2.10
2493 3255 8.887393 ACTTTCTAAGTTCCCAAAACCTATAGA 58.113 33.333 0.00 0.00 39.04 1.98
2509 3271 4.532314 AACCGGATCGAACTTTCTAAGT 57.468 40.909 9.46 0.00 45.46 2.24
2511 3273 5.058490 ACAAAACCGGATCGAACTTTCTAA 58.942 37.500 9.46 0.00 0.00 2.10
2517 3614 3.207778 TGAAACAAAACCGGATCGAACT 58.792 40.909 9.46 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.