Multiple sequence alignment - TraesCS5B01G483900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G483900 chr5B 100.000 2630 0 0 1 2630 655584163 655581534 0.000000e+00 4857.0
1 TraesCS5B01G483900 chr5B 74.725 728 141 28 21 730 149579559 149580261 4.280000e-73 285.0
2 TraesCS5B01G483900 chr5D 90.343 1108 48 17 729 1804 520348358 520347278 0.000000e+00 1399.0
3 TraesCS5B01G483900 chr5D 85.541 740 77 13 1 724 175310689 175309964 0.000000e+00 747.0
4 TraesCS5B01G483900 chr1A 84.739 747 80 18 1 728 582666746 582666015 0.000000e+00 717.0
5 TraesCS5B01G483900 chr5A 89.501 581 25 9 914 1458 648535347 648534767 0.000000e+00 702.0
6 TraesCS5B01G483900 chr5A 86.306 555 50 14 2093 2630 648534753 648534208 4.880000e-162 580.0
7 TraesCS5B01G483900 chr5A 86.992 123 13 1 789 911 648535735 648535616 4.570000e-28 135.0
8 TraesCS5B01G483900 chr1B 83.198 738 93 16 1 722 646888479 646887757 0.000000e+00 647.0
9 TraesCS5B01G483900 chr1B 78.167 742 123 20 2 724 660968966 660968245 1.120000e-118 436.0
10 TraesCS5B01G483900 chr1B 77.358 689 111 27 56 729 660689164 660688506 1.490000e-97 366.0
11 TraesCS5B01G483900 chr3B 81.067 750 100 24 1 729 8491845 8492573 6.360000e-156 560.0
12 TraesCS5B01G483900 chr3B 79.808 104 14 6 638 737 737414850 737414750 4.700000e-08 69.4
13 TraesCS5B01G483900 chr4D 79.733 750 103 23 1 730 479684853 479685573 5.060000e-137 497.0
14 TraesCS5B01G483900 chr2A 79.625 746 99 28 1 729 596417767 596418476 1.090000e-133 486.0
15 TraesCS5B01G483900 chr4B 79.322 590 93 16 1 570 514033773 514033193 1.140000e-103 387.0
16 TraesCS5B01G483900 chr4B 93.519 108 6 1 622 729 514033181 514033075 2.710000e-35 159.0
17 TraesCS5B01G483900 chr2D 76.330 752 126 34 1 730 608476445 608477166 3.220000e-94 355.0
18 TraesCS5B01G483900 chr7A 78.643 398 54 23 357 737 59474538 59474921 4.380000e-58 235.0
19 TraesCS5B01G483900 chr7A 78.392 398 51 26 357 737 53211274 53211653 2.630000e-55 226.0
20 TraesCS5B01G483900 chr6A 93.548 155 8 2 1 153 30998229 30998383 2.040000e-56 230.0
21 TraesCS5B01G483900 chr1D 77.778 171 27 11 283 447 284244197 284244032 7.750000e-16 95.3
22 TraesCS5B01G483900 chr1D 82.927 82 14 0 643 724 22309878 22309797 1.010000e-09 75.0
23 TraesCS5B01G483900 chr7B 100.000 28 0 0 79 106 593628982 593629009 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G483900 chr5B 655581534 655584163 2629 True 4857.000000 4857 100.000000 1 2630 1 chr5B.!!$R1 2629
1 TraesCS5B01G483900 chr5B 149579559 149580261 702 False 285.000000 285 74.725000 21 730 1 chr5B.!!$F1 709
2 TraesCS5B01G483900 chr5D 520347278 520348358 1080 True 1399.000000 1399 90.343000 729 1804 1 chr5D.!!$R2 1075
3 TraesCS5B01G483900 chr5D 175309964 175310689 725 True 747.000000 747 85.541000 1 724 1 chr5D.!!$R1 723
4 TraesCS5B01G483900 chr1A 582666015 582666746 731 True 717.000000 717 84.739000 1 728 1 chr1A.!!$R1 727
5 TraesCS5B01G483900 chr5A 648534208 648535735 1527 True 472.333333 702 87.599667 789 2630 3 chr5A.!!$R1 1841
6 TraesCS5B01G483900 chr1B 646887757 646888479 722 True 647.000000 647 83.198000 1 722 1 chr1B.!!$R1 721
7 TraesCS5B01G483900 chr1B 660968245 660968966 721 True 436.000000 436 78.167000 2 724 1 chr1B.!!$R3 722
8 TraesCS5B01G483900 chr1B 660688506 660689164 658 True 366.000000 366 77.358000 56 729 1 chr1B.!!$R2 673
9 TraesCS5B01G483900 chr3B 8491845 8492573 728 False 560.000000 560 81.067000 1 729 1 chr3B.!!$F1 728
10 TraesCS5B01G483900 chr4D 479684853 479685573 720 False 497.000000 497 79.733000 1 730 1 chr4D.!!$F1 729
11 TraesCS5B01G483900 chr2A 596417767 596418476 709 False 486.000000 486 79.625000 1 729 1 chr2A.!!$F1 728
12 TraesCS5B01G483900 chr4B 514033075 514033773 698 True 273.000000 387 86.420500 1 729 2 chr4B.!!$R1 728
13 TraesCS5B01G483900 chr2D 608476445 608477166 721 False 355.000000 355 76.330000 1 730 1 chr2D.!!$F1 729

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
309 321 0.10412 CGGCGTCCATCCATGTTCTA 59.896 55.0 0.0 0.0 0.0 2.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1904 2278 0.036765 CCAGCAAATGCAACATGGCT 60.037 50.0 8.28 0.0 45.16 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 37 1.743252 CCACCTCCTTGCTTCTCGC 60.743 63.158 0.00 0.00 39.77 5.03
47 52 2.415512 GCTTCTCGCGTGAAAACCTAAT 59.584 45.455 22.26 0.00 0.00 1.73
61 66 3.690685 CTAATTCCGGTGGGCGGCA 62.691 63.158 12.47 0.00 0.00 5.69
110 118 4.388499 GGCGTCGCCTTGAGGGAA 62.388 66.667 28.98 0.00 46.69 3.97
112 120 2.657237 CGTCGCCTTGAGGGAAGT 59.343 61.111 0.00 0.00 39.48 3.01
125 133 4.643387 GAAGTGTGGTGGCGGGCT 62.643 66.667 2.38 0.00 0.00 5.19
130 138 3.702048 GTGGTGGCGGGCTCTGTA 61.702 66.667 2.38 0.00 0.00 2.74
192 201 1.761174 AGCCTTCGCTTTTCCTCCA 59.239 52.632 0.00 0.00 45.55 3.86
235 244 1.466558 GTAGCTTGCTCTGCTTTGGAC 59.533 52.381 0.00 0.00 41.46 4.02
264 274 0.737019 CGGCACAACATTTGGATGCC 60.737 55.000 9.45 9.45 44.76 4.40
274 284 3.334604 TGGATGCCCTGATCCACC 58.665 61.111 0.00 0.00 45.85 4.61
300 310 2.682876 TTTTTCGGCGGCGTCCATC 61.683 57.895 31.06 0.00 0.00 3.51
308 318 1.153369 CGGCGTCCATCCATGTTCT 60.153 57.895 0.00 0.00 0.00 3.01
309 321 0.104120 CGGCGTCCATCCATGTTCTA 59.896 55.000 0.00 0.00 0.00 2.10
419 433 2.284331 TGCCGAGGCCCTTAGTGA 60.284 61.111 12.05 0.00 41.09 3.41
459 490 0.824109 TAGGTGCATCTTCACTCCCG 59.176 55.000 3.93 0.00 37.16 5.14
490 521 1.077787 CATTGCTTCCGCCCAGGTA 60.078 57.895 0.00 0.00 41.99 3.08
536 580 3.327757 TGTGCTCCATGTATATCCTTCCC 59.672 47.826 0.00 0.00 0.00 3.97
594 638 1.580815 GCCTCTGTATCTTGCTGCTC 58.419 55.000 0.00 0.00 0.00 4.26
595 639 1.138661 GCCTCTGTATCTTGCTGCTCT 59.861 52.381 0.00 0.00 0.00 4.09
596 640 2.419851 GCCTCTGTATCTTGCTGCTCTT 60.420 50.000 0.00 0.00 0.00 2.85
597 641 3.196463 CCTCTGTATCTTGCTGCTCTTG 58.804 50.000 0.00 0.00 0.00 3.02
598 642 2.608546 CTCTGTATCTTGCTGCTCTTGC 59.391 50.000 0.00 0.00 40.20 4.01
599 643 2.235650 TCTGTATCTTGCTGCTCTTGCT 59.764 45.455 0.00 0.00 40.48 3.91
600 644 2.352034 CTGTATCTTGCTGCTCTTGCTG 59.648 50.000 0.00 0.00 40.48 4.41
616 667 5.853936 TCTTGCTGCTTTCTGTAGTTCTTA 58.146 37.500 0.00 0.00 0.00 2.10
636 687 6.578944 TCTTACTCTTTGTTGTACTCTGCAA 58.421 36.000 0.00 0.00 0.00 4.08
653 704 1.308998 CAATTGTATCCTGGCCGGTC 58.691 55.000 11.58 0.00 0.00 4.79
691 744 0.824759 AAGTTGGACTAGGCTAGCGG 59.175 55.000 21.26 4.06 0.00 5.52
749 802 2.143122 TGTTGAGCTGTTTTCGCTAGG 58.857 47.619 0.00 0.00 37.96 3.02
753 806 2.094182 TGAGCTGTTTTCGCTAGGTAGG 60.094 50.000 0.00 0.00 37.96 3.18
764 817 5.353394 TCGCTAGGTAGGTTCAAAATCAT 57.647 39.130 0.00 0.00 0.00 2.45
768 821 6.537301 CGCTAGGTAGGTTCAAAATCATTGTA 59.463 38.462 0.00 0.00 0.00 2.41
779 832 7.377766 TCAAAATCATTGTACAGGCTAGAAC 57.622 36.000 0.00 0.00 0.00 3.01
847 904 0.236449 GTACGTTCAAAGTTGGCGGG 59.764 55.000 0.00 0.00 33.65 6.13
870 927 3.777925 CCGTGGCTTTCAGCGTCG 61.778 66.667 0.00 0.00 43.62 5.12
931 1258 0.953471 TTGCCCGTCTCAACCATTCG 60.953 55.000 0.00 0.00 0.00 3.34
969 1309 0.663688 CCTCGACCACTCGTCCATAG 59.336 60.000 0.00 0.00 41.02 2.23
1050 1396 2.004120 AGTGGTGGTGGTGGGTTCA 61.004 57.895 0.00 0.00 0.00 3.18
1059 1405 1.147600 GGTGGGTTCACGGTTCTGT 59.852 57.895 0.00 0.00 44.50 3.41
1458 1821 2.118513 ACGGTCTCTGCTGGAGGT 59.881 61.111 0.00 0.00 42.10 3.85
1487 1850 2.579787 CGACGACTCCGATGGCAC 60.580 66.667 0.00 0.00 39.50 5.01
1611 1974 3.876300 GCGCTCACCGTGATTCTT 58.124 55.556 0.00 0.00 39.71 2.52
1620 1983 3.767131 TCACCGTGATTCTTGACCAGATA 59.233 43.478 0.00 0.00 0.00 1.98
1632 1995 5.600069 TCTTGACCAGATACATCACTAGCAT 59.400 40.000 0.00 0.00 0.00 3.79
1639 2002 5.468072 CAGATACATCACTAGCATTGGAACC 59.532 44.000 0.00 0.00 0.00 3.62
1668 2038 2.659279 CGCCGCAATTTCGTTTGTAAAT 59.341 40.909 0.00 0.00 0.00 1.40
1671 2041 4.432373 GCCGCAATTTCGTTTGTAAATCAC 60.432 41.667 0.00 0.00 0.00 3.06
1678 2049 8.802856 CAATTTCGTTTGTAAATCACTTGTGAA 58.197 29.630 7.57 0.00 0.00 3.18
1682 2053 8.996988 TCGTTTGTAAATCACTTGTGAAATAC 57.003 30.769 7.57 12.86 0.00 1.89
1699 2070 7.081349 GTGAAATACCATCATTTTCGTTGTGA 58.919 34.615 0.00 0.00 33.15 3.58
1700 2071 7.593273 GTGAAATACCATCATTTTCGTTGTGAA 59.407 33.333 0.00 0.00 33.15 3.18
1728 2099 2.271800 CTAGCATTCGACCAGGTGTTC 58.728 52.381 0.00 0.00 0.00 3.18
1760 2131 4.038402 CACTTTCTTTTGTGAGGCAAGGAT 59.962 41.667 0.00 0.00 38.47 3.24
1761 2132 4.038402 ACTTTCTTTTGTGAGGCAAGGATG 59.962 41.667 0.00 0.00 38.47 3.51
1764 2135 4.072131 TCTTTTGTGAGGCAAGGATGTAC 58.928 43.478 0.00 0.00 38.47 2.90
1765 2136 3.788227 TTTGTGAGGCAAGGATGTACT 57.212 42.857 0.00 0.00 38.47 2.73
1770 2141 2.906389 TGAGGCAAGGATGTACTCTTGT 59.094 45.455 18.25 6.56 41.56 3.16
1771 2142 3.327757 TGAGGCAAGGATGTACTCTTGTT 59.672 43.478 18.25 11.31 41.56 2.83
1772 2143 3.679389 AGGCAAGGATGTACTCTTGTTG 58.321 45.455 18.25 7.97 41.56 3.33
1775 2146 3.189287 GCAAGGATGTACTCTTGTTGTGG 59.811 47.826 18.25 1.86 41.56 4.17
1791 2165 4.865365 TGTTGTGGAAAAACAAATTCGGTC 59.135 37.500 0.00 0.00 42.10 4.79
1793 2167 3.702045 TGTGGAAAAACAAATTCGGTCCT 59.298 39.130 0.00 0.00 0.00 3.85
1795 2169 3.702045 TGGAAAAACAAATTCGGTCCTGT 59.298 39.130 0.00 0.00 0.00 4.00
1823 2197 4.166011 GCGAGTTGCATGTCCGCC 62.166 66.667 10.76 0.00 45.45 6.13
1824 2198 3.853330 CGAGTTGCATGTCCGCCG 61.853 66.667 0.00 0.00 0.00 6.46
1825 2199 3.499737 GAGTTGCATGTCCGCCGG 61.500 66.667 0.00 0.00 0.00 6.13
1826 2200 4.329545 AGTTGCATGTCCGCCGGT 62.330 61.111 1.63 0.00 0.00 5.28
1827 2201 4.101790 GTTGCATGTCCGCCGGTG 62.102 66.667 8.42 8.42 0.00 4.94
1828 2202 4.321966 TTGCATGTCCGCCGGTGA 62.322 61.111 18.79 3.77 0.00 4.02
1840 2214 4.012554 CGGTGACCGGATTCATCG 57.987 61.111 17.80 11.48 43.29 3.84
1841 2215 2.237751 CGGTGACCGGATTCATCGC 61.238 63.158 17.80 4.52 42.81 4.58
1842 2216 1.153449 GGTGACCGGATTCATCGCA 60.153 57.895 9.46 0.00 0.00 5.10
1843 2217 0.532862 GGTGACCGGATTCATCGCAT 60.533 55.000 9.46 0.00 0.00 4.73
1844 2218 0.861837 GTGACCGGATTCATCGCATC 59.138 55.000 9.46 0.00 0.00 3.91
1845 2219 0.249868 TGACCGGATTCATCGCATCC 60.250 55.000 9.46 0.00 37.45 3.51
1846 2220 0.249868 GACCGGATTCATCGCATCCA 60.250 55.000 9.46 0.00 40.46 3.41
1847 2221 0.250038 ACCGGATTCATCGCATCCAG 60.250 55.000 9.46 0.00 40.46 3.86
1848 2222 0.033920 CCGGATTCATCGCATCCAGA 59.966 55.000 0.00 0.00 40.46 3.86
1849 2223 1.426423 CGGATTCATCGCATCCAGAG 58.574 55.000 1.39 0.00 40.46 3.35
1850 2224 1.155042 GGATTCATCGCATCCAGAGC 58.845 55.000 0.00 0.00 40.21 4.09
1851 2225 1.155042 GATTCATCGCATCCAGAGCC 58.845 55.000 0.00 0.00 0.00 4.70
1852 2226 0.602106 ATTCATCGCATCCAGAGCCG 60.602 55.000 0.00 0.00 0.00 5.52
1853 2227 1.960040 TTCATCGCATCCAGAGCCGT 61.960 55.000 0.00 0.00 0.00 5.68
1854 2228 1.522355 CATCGCATCCAGAGCCGTT 60.522 57.895 0.00 0.00 0.00 4.44
1855 2229 1.522355 ATCGCATCCAGAGCCGTTG 60.522 57.895 0.00 0.00 0.00 4.10
1856 2230 2.930385 ATCGCATCCAGAGCCGTTGG 62.930 60.000 0.00 0.00 37.04 3.77
1860 2234 3.309582 TCCAGAGCCGTTGGATCC 58.690 61.111 4.20 4.20 39.17 3.36
1861 2235 2.190578 CCAGAGCCGTTGGATCCC 59.809 66.667 9.90 0.00 39.17 3.85
1862 2236 2.669133 CCAGAGCCGTTGGATCCCA 61.669 63.158 9.90 0.00 39.17 4.37
1863 2237 1.450312 CAGAGCCGTTGGATCCCAC 60.450 63.158 9.90 7.71 39.17 4.61
1864 2238 2.511600 GAGCCGTTGGATCCCACG 60.512 66.667 27.08 27.08 31.04 4.94
1865 2239 4.778143 AGCCGTTGGATCCCACGC 62.778 66.667 28.27 22.89 30.78 5.34
1867 2241 4.752879 CCGTTGGATCCCACGCGT 62.753 66.667 28.27 5.58 32.77 6.01
1868 2242 3.487202 CGTTGGATCCCACGCGTG 61.487 66.667 31.77 31.77 30.78 5.34
1869 2243 2.047655 GTTGGATCCCACGCGTGA 60.048 61.111 39.10 21.97 30.78 4.35
1870 2244 2.047655 TTGGATCCCACGCGTGAC 60.048 61.111 39.10 24.47 30.78 3.67
1871 2245 2.873525 TTGGATCCCACGCGTGACA 61.874 57.895 39.10 24.83 30.78 3.58
1872 2246 2.509336 GGATCCCACGCGTGACAG 60.509 66.667 39.10 25.85 0.00 3.51
1873 2247 2.261671 GATCCCACGCGTGACAGT 59.738 61.111 39.10 21.54 0.00 3.55
1874 2248 1.374252 GATCCCACGCGTGACAGTT 60.374 57.895 39.10 21.23 0.00 3.16
1875 2249 1.626654 GATCCCACGCGTGACAGTTG 61.627 60.000 39.10 21.12 0.00 3.16
1876 2250 3.345808 CCCACGCGTGACAGTTGG 61.346 66.667 39.10 25.87 0.00 3.77
1877 2251 2.587753 CCACGCGTGACAGTTGGT 60.588 61.111 39.10 0.00 0.00 3.67
1878 2252 1.300311 CCACGCGTGACAGTTGGTA 60.300 57.895 39.10 0.00 0.00 3.25
1879 2253 1.282248 CCACGCGTGACAGTTGGTAG 61.282 60.000 39.10 15.23 0.00 3.18
1880 2254 0.596600 CACGCGTGACAGTTGGTAGT 60.597 55.000 34.93 0.00 0.00 2.73
1881 2255 0.596600 ACGCGTGACAGTTGGTAGTG 60.597 55.000 12.93 0.00 0.00 2.74
1882 2256 0.596600 CGCGTGACAGTTGGTAGTGT 60.597 55.000 0.00 0.00 40.63 3.55
1883 2257 0.859232 GCGTGACAGTTGGTAGTGTG 59.141 55.000 0.00 0.00 38.05 3.82
1884 2258 1.537348 GCGTGACAGTTGGTAGTGTGA 60.537 52.381 0.00 0.00 38.05 3.58
1885 2259 2.124903 CGTGACAGTTGGTAGTGTGAC 58.875 52.381 0.00 0.00 38.05 3.67
1886 2260 2.480845 GTGACAGTTGGTAGTGTGACC 58.519 52.381 0.00 0.00 38.05 4.02
1887 2261 1.414919 TGACAGTTGGTAGTGTGACCC 59.585 52.381 0.00 0.00 38.05 4.46
1888 2262 0.391597 ACAGTTGGTAGTGTGACCCG 59.608 55.000 0.00 0.00 38.89 5.28
1889 2263 0.949105 CAGTTGGTAGTGTGACCCGC 60.949 60.000 0.00 0.00 38.89 6.13
1890 2264 1.670083 GTTGGTAGTGTGACCCGCC 60.670 63.158 0.00 0.00 38.89 6.13
1891 2265 2.141448 TTGGTAGTGTGACCCGCCA 61.141 57.895 0.00 0.00 38.89 5.69
1892 2266 2.107041 TTGGTAGTGTGACCCGCCAG 62.107 60.000 0.00 0.00 38.89 4.85
1893 2267 2.434359 GTAGTGTGACCCGCCAGC 60.434 66.667 0.00 0.00 0.00 4.85
1894 2268 2.603473 TAGTGTGACCCGCCAGCT 60.603 61.111 0.00 0.00 0.00 4.24
1895 2269 2.214216 TAGTGTGACCCGCCAGCTT 61.214 57.895 0.00 0.00 0.00 3.74
1896 2270 2.449031 TAGTGTGACCCGCCAGCTTG 62.449 60.000 0.00 0.00 0.00 4.01
1899 2273 4.577677 TGACCCGCCAGCTTGCAA 62.578 61.111 10.77 0.00 0.00 4.08
1900 2274 3.294493 GACCCGCCAGCTTGCAAA 61.294 61.111 10.77 0.00 0.00 3.68
1901 2275 2.837291 ACCCGCCAGCTTGCAAAA 60.837 55.556 10.77 0.00 0.00 2.44
1902 2276 2.158561 GACCCGCCAGCTTGCAAAAT 62.159 55.000 10.77 0.00 0.00 1.82
1903 2277 1.738830 CCCGCCAGCTTGCAAAATG 60.739 57.895 10.77 1.86 0.00 2.32
1904 2278 1.289694 CCGCCAGCTTGCAAAATGA 59.710 52.632 10.77 0.00 0.00 2.57
1905 2279 0.734942 CCGCCAGCTTGCAAAATGAG 60.735 55.000 10.77 5.84 0.00 2.90
1906 2280 1.349259 CGCCAGCTTGCAAAATGAGC 61.349 55.000 10.77 5.73 36.68 4.26
1907 2281 1.017701 GCCAGCTTGCAAAATGAGCC 61.018 55.000 4.63 0.00 37.11 4.70
1908 2282 0.319083 CCAGCTTGCAAAATGAGCCA 59.681 50.000 11.20 0.00 37.11 4.75
1909 2283 1.066430 CCAGCTTGCAAAATGAGCCAT 60.066 47.619 11.20 0.00 37.11 4.40
1910 2284 1.999735 CAGCTTGCAAAATGAGCCATG 59.000 47.619 0.00 0.00 37.11 3.66
1911 2285 1.621814 AGCTTGCAAAATGAGCCATGT 59.378 42.857 0.00 0.00 37.11 3.21
1912 2286 2.038033 AGCTTGCAAAATGAGCCATGTT 59.962 40.909 0.00 0.00 37.11 2.71
1913 2287 2.158841 GCTTGCAAAATGAGCCATGTTG 59.841 45.455 0.00 11.63 40.81 3.33
1919 2293 4.717991 CAAAATGAGCCATGTTGCATTTG 58.282 39.130 13.95 8.06 39.91 2.32
1920 2294 2.018542 ATGAGCCATGTTGCATTTGC 57.981 45.000 0.00 0.00 42.50 3.68
1921 2295 0.970640 TGAGCCATGTTGCATTTGCT 59.029 45.000 3.94 3.49 42.66 3.91
1922 2296 1.337354 TGAGCCATGTTGCATTTGCTG 60.337 47.619 3.94 0.00 42.66 4.41
1923 2297 0.036765 AGCCATGTTGCATTTGCTGG 60.037 50.000 3.94 4.33 42.66 4.85
1924 2298 1.641123 GCCATGTTGCATTTGCTGGC 61.641 55.000 15.11 15.11 46.43 4.85
1925 2299 0.036765 CCATGTTGCATTTGCTGGCT 60.037 50.000 3.94 0.00 42.66 4.75
1926 2300 1.609580 CCATGTTGCATTTGCTGGCTT 60.610 47.619 3.94 0.00 42.66 4.35
1927 2301 1.463056 CATGTTGCATTTGCTGGCTTG 59.537 47.619 3.94 0.10 42.66 4.01
1928 2302 0.464870 TGTTGCATTTGCTGGCTTGT 59.535 45.000 3.94 0.00 42.66 3.16
1929 2303 0.863144 GTTGCATTTGCTGGCTTGTG 59.137 50.000 3.94 0.00 42.66 3.33
1930 2304 0.249953 TTGCATTTGCTGGCTTGTGG 60.250 50.000 3.94 0.00 42.66 4.17
1931 2305 2.030958 GCATTTGCTGGCTTGTGGC 61.031 57.895 0.00 0.00 38.21 5.01
1932 2306 1.368209 CATTTGCTGGCTTGTGGCA 59.632 52.632 0.00 0.00 46.87 4.92
1938 2312 2.203523 TGGCTTGTGGCAGTGCAT 60.204 55.556 18.61 0.00 44.10 3.96
1939 2313 1.833492 TGGCTTGTGGCAGTGCATT 60.833 52.632 18.61 0.00 44.10 3.56
1940 2314 1.373748 GGCTTGTGGCAGTGCATTG 60.374 57.895 18.61 4.57 44.01 2.82
1941 2315 1.661480 GCTTGTGGCAGTGCATTGA 59.339 52.632 18.61 0.00 41.35 2.57
1942 2316 0.665369 GCTTGTGGCAGTGCATTGAC 60.665 55.000 18.61 11.34 41.35 3.18
1943 2317 0.038892 CTTGTGGCAGTGCATTGACC 60.039 55.000 18.61 13.25 0.00 4.02
1944 2318 1.794151 TTGTGGCAGTGCATTGACCG 61.794 55.000 18.61 0.00 0.00 4.79
1945 2319 2.672651 TGGCAGTGCATTGACCGG 60.673 61.111 18.61 0.00 0.00 5.28
1946 2320 2.359850 GGCAGTGCATTGACCGGA 60.360 61.111 18.61 0.00 0.00 5.14
1947 2321 2.690778 GGCAGTGCATTGACCGGAC 61.691 63.158 18.61 1.07 0.00 4.79
1948 2322 2.690778 GCAGTGCATTGACCGGACC 61.691 63.158 14.15 0.00 0.00 4.46
1949 2323 2.040544 CAGTGCATTGACCGGACCC 61.041 63.158 9.46 0.00 0.00 4.46
1950 2324 3.124921 GTGCATTGACCGGACCCG 61.125 66.667 9.46 0.66 39.44 5.28
1951 2325 3.632080 TGCATTGACCGGACCCGT 61.632 61.111 9.46 0.00 37.81 5.28
1952 2326 2.359478 GCATTGACCGGACCCGTT 60.359 61.111 9.46 0.00 37.81 4.44
1953 2327 1.969589 GCATTGACCGGACCCGTTT 60.970 57.895 9.46 0.00 37.81 3.60
1954 2328 0.674269 GCATTGACCGGACCCGTTTA 60.674 55.000 9.46 0.00 37.81 2.01
1955 2329 1.081094 CATTGACCGGACCCGTTTAC 58.919 55.000 9.46 0.00 37.81 2.01
1956 2330 0.686224 ATTGACCGGACCCGTTTACA 59.314 50.000 9.46 0.00 37.81 2.41
1957 2331 0.467384 TTGACCGGACCCGTTTACAA 59.533 50.000 9.46 5.49 37.81 2.41
1958 2332 0.249826 TGACCGGACCCGTTTACAAC 60.250 55.000 9.46 0.00 37.81 3.32
1959 2333 0.249826 GACCGGACCCGTTTACAACA 60.250 55.000 9.46 0.00 37.81 3.33
1960 2334 0.397564 ACCGGACCCGTTTACAACAT 59.602 50.000 9.46 0.00 37.81 2.71
1961 2335 0.800012 CCGGACCCGTTTACAACATG 59.200 55.000 0.00 0.00 37.81 3.21
1962 2336 1.608542 CCGGACCCGTTTACAACATGA 60.609 52.381 0.00 0.00 37.81 3.07
1963 2337 1.730064 CGGACCCGTTTACAACATGAG 59.270 52.381 0.00 0.00 34.35 2.90
1964 2338 2.774687 GGACCCGTTTACAACATGAGT 58.225 47.619 0.00 0.00 0.00 3.41
1965 2339 2.740447 GGACCCGTTTACAACATGAGTC 59.260 50.000 0.00 0.00 0.00 3.36
1966 2340 3.395639 GACCCGTTTACAACATGAGTCA 58.604 45.455 0.00 0.00 0.00 3.41
1967 2341 4.000988 GACCCGTTTACAACATGAGTCAT 58.999 43.478 0.00 0.00 0.00 3.06
1968 2342 3.751175 ACCCGTTTACAACATGAGTCATG 59.249 43.478 27.88 27.88 46.18 3.07
1981 2355 5.986936 CATGAGTCATGTTGCACTATGATC 58.013 41.667 22.70 12.02 37.12 2.92
1982 2356 4.445453 TGAGTCATGTTGCACTATGATCC 58.555 43.478 13.43 9.70 35.91 3.36
1983 2357 4.080975 TGAGTCATGTTGCACTATGATCCA 60.081 41.667 13.43 11.54 35.91 3.41
1984 2358 5.045012 AGTCATGTTGCACTATGATCCAT 57.955 39.130 13.43 0.00 35.91 3.41
1985 2359 4.820173 AGTCATGTTGCACTATGATCCATG 59.180 41.667 13.43 0.00 35.91 3.66
1986 2360 4.577693 GTCATGTTGCACTATGATCCATGT 59.422 41.667 13.43 0.00 35.91 3.21
1987 2361 5.066893 GTCATGTTGCACTATGATCCATGTT 59.933 40.000 13.43 0.00 35.91 2.71
1988 2362 4.968812 TGTTGCACTATGATCCATGTTG 57.031 40.909 0.00 0.00 0.00 3.33
1989 2363 4.334552 TGTTGCACTATGATCCATGTTGT 58.665 39.130 0.00 0.00 0.00 3.32
1990 2364 4.156373 TGTTGCACTATGATCCATGTTGTG 59.844 41.667 0.00 0.00 0.00 3.33
1991 2365 2.684374 TGCACTATGATCCATGTTGTGC 59.316 45.455 18.21 18.21 41.78 4.57
1992 2366 2.947652 GCACTATGATCCATGTTGTGCT 59.052 45.455 17.98 0.00 40.22 4.40
1993 2367 3.003068 GCACTATGATCCATGTTGTGCTC 59.997 47.826 17.98 0.00 40.22 4.26
1994 2368 3.246936 CACTATGATCCATGTTGTGCTCG 59.753 47.826 0.00 0.00 0.00 5.03
1995 2369 1.671979 ATGATCCATGTTGTGCTCGG 58.328 50.000 0.00 0.00 0.00 4.63
1996 2370 0.392863 TGATCCATGTTGTGCTCGGG 60.393 55.000 0.00 0.00 0.00 5.14
1997 2371 0.107703 GATCCATGTTGTGCTCGGGA 60.108 55.000 0.00 0.00 0.00 5.14
1998 2372 0.327924 ATCCATGTTGTGCTCGGGAA 59.672 50.000 0.00 0.00 0.00 3.97
1999 2373 0.109532 TCCATGTTGTGCTCGGGAAA 59.890 50.000 0.00 0.00 0.00 3.13
2000 2374 1.176527 CCATGTTGTGCTCGGGAAAT 58.823 50.000 0.00 0.00 0.00 2.17
2001 2375 1.133025 CCATGTTGTGCTCGGGAAATC 59.867 52.381 0.00 0.00 0.00 2.17
2002 2376 1.133025 CATGTTGTGCTCGGGAAATCC 59.867 52.381 0.00 0.00 0.00 3.01
2003 2377 0.109532 TGTTGTGCTCGGGAAATCCA 59.890 50.000 1.22 0.00 37.91 3.41
2004 2378 1.271871 TGTTGTGCTCGGGAAATCCAT 60.272 47.619 1.22 0.00 37.91 3.41
2005 2379 1.401905 GTTGTGCTCGGGAAATCCATC 59.598 52.381 1.22 0.00 37.91 3.51
2006 2380 0.911769 TGTGCTCGGGAAATCCATCT 59.088 50.000 1.22 0.00 37.91 2.90
2007 2381 1.281867 TGTGCTCGGGAAATCCATCTT 59.718 47.619 1.22 0.00 37.91 2.40
2008 2382 1.943340 GTGCTCGGGAAATCCATCTTC 59.057 52.381 1.22 0.00 37.91 2.87
2009 2383 1.134098 TGCTCGGGAAATCCATCTTCC 60.134 52.381 1.22 0.00 41.50 3.46
2010 2384 1.134098 GCTCGGGAAATCCATCTTCCA 60.134 52.381 1.22 0.00 43.64 3.53
2011 2385 2.683742 GCTCGGGAAATCCATCTTCCAA 60.684 50.000 1.22 0.00 43.64 3.53
2012 2386 2.945668 CTCGGGAAATCCATCTTCCAAC 59.054 50.000 1.22 0.00 43.64 3.77
2013 2387 2.024414 CGGGAAATCCATCTTCCAACC 58.976 52.381 1.22 0.00 43.64 3.77
2014 2388 2.388735 GGGAAATCCATCTTCCAACCC 58.611 52.381 1.22 0.00 43.64 4.11
2015 2389 2.388735 GGAAATCCATCTTCCAACCCC 58.611 52.381 0.00 0.00 41.79 4.95
2016 2390 2.024414 GAAATCCATCTTCCAACCCCG 58.976 52.381 0.00 0.00 0.00 5.73
2017 2391 0.258774 AATCCATCTTCCAACCCCGG 59.741 55.000 0.00 0.00 0.00 5.73
2018 2392 0.919289 ATCCATCTTCCAACCCCGGT 60.919 55.000 0.00 0.00 0.00 5.28
2019 2393 1.137594 TCCATCTTCCAACCCCGGTT 61.138 55.000 0.00 0.00 39.13 4.44
2020 2394 0.251608 CCATCTTCCAACCCCGGTTT 60.252 55.000 0.00 0.00 36.00 3.27
2021 2395 0.887933 CATCTTCCAACCCCGGTTTG 59.112 55.000 0.00 3.10 36.00 2.93
2022 2396 0.898326 ATCTTCCAACCCCGGTTTGC 60.898 55.000 0.00 0.00 36.00 3.68
2023 2397 1.830408 CTTCCAACCCCGGTTTGCA 60.830 57.895 0.00 0.00 36.00 4.08
2024 2398 1.381327 TTCCAACCCCGGTTTGCAA 60.381 52.632 0.00 0.00 36.00 4.08
2025 2399 0.760945 TTCCAACCCCGGTTTGCAAT 60.761 50.000 0.00 0.00 36.00 3.56
2026 2400 0.112606 TCCAACCCCGGTTTGCAATA 59.887 50.000 0.00 0.00 36.00 1.90
2027 2401 1.190643 CCAACCCCGGTTTGCAATAT 58.809 50.000 0.00 0.00 36.00 1.28
2028 2402 2.025226 TCCAACCCCGGTTTGCAATATA 60.025 45.455 0.00 0.00 36.00 0.86
2029 2403 2.761208 CCAACCCCGGTTTGCAATATAA 59.239 45.455 0.00 0.00 36.00 0.98
2030 2404 3.181480 CCAACCCCGGTTTGCAATATAAG 60.181 47.826 0.00 0.00 36.00 1.73
2031 2405 3.375647 ACCCCGGTTTGCAATATAAGT 57.624 42.857 0.00 0.00 0.00 2.24
2032 2406 3.284617 ACCCCGGTTTGCAATATAAGTC 58.715 45.455 0.00 0.00 0.00 3.01
2033 2407 3.283751 CCCCGGTTTGCAATATAAGTCA 58.716 45.455 0.00 0.00 0.00 3.41
2034 2408 3.888930 CCCCGGTTTGCAATATAAGTCAT 59.111 43.478 0.00 0.00 0.00 3.06
2035 2409 4.261572 CCCCGGTTTGCAATATAAGTCATG 60.262 45.833 0.00 0.00 0.00 3.07
2036 2410 4.338118 CCCGGTTTGCAATATAAGTCATGT 59.662 41.667 0.00 0.00 0.00 3.21
2037 2411 5.163561 CCCGGTTTGCAATATAAGTCATGTT 60.164 40.000 0.00 0.00 0.00 2.71
2038 2412 6.038825 CCCGGTTTGCAATATAAGTCATGTTA 59.961 38.462 0.00 0.00 0.00 2.41
2039 2413 7.415765 CCCGGTTTGCAATATAAGTCATGTTAA 60.416 37.037 0.00 0.00 0.00 2.01
2040 2414 7.643764 CCGGTTTGCAATATAAGTCATGTTAAG 59.356 37.037 0.00 0.00 0.00 1.85
2041 2415 7.165812 CGGTTTGCAATATAAGTCATGTTAAGC 59.834 37.037 0.00 0.00 0.00 3.09
2042 2416 8.190784 GGTTTGCAATATAAGTCATGTTAAGCT 58.809 33.333 0.00 0.00 0.00 3.74
2043 2417 9.226345 GTTTGCAATATAAGTCATGTTAAGCTC 57.774 33.333 0.00 0.00 0.00 4.09
2044 2418 7.177498 TGCAATATAAGTCATGTTAAGCTCG 57.823 36.000 0.00 0.00 0.00 5.03
2045 2419 6.074005 GCAATATAAGTCATGTTAAGCTCGC 58.926 40.000 0.00 0.00 0.00 5.03
2046 2420 6.073548 GCAATATAAGTCATGTTAAGCTCGCT 60.074 38.462 0.00 0.00 0.00 4.93
2047 2421 7.286508 CAATATAAGTCATGTTAAGCTCGCTG 58.713 38.462 0.00 0.00 0.00 5.18
2048 2422 2.015736 AGTCATGTTAAGCTCGCTGG 57.984 50.000 0.00 0.00 0.00 4.85
2049 2423 1.276421 AGTCATGTTAAGCTCGCTGGT 59.724 47.619 0.00 0.00 0.00 4.00
2050 2424 2.076863 GTCATGTTAAGCTCGCTGGTT 58.923 47.619 0.00 0.00 39.89 3.67
2051 2425 2.076100 TCATGTTAAGCTCGCTGGTTG 58.924 47.619 0.00 0.00 37.56 3.77
2052 2426 2.076100 CATGTTAAGCTCGCTGGTTGA 58.924 47.619 0.00 0.00 37.56 3.18
2053 2427 2.248280 TGTTAAGCTCGCTGGTTGAA 57.752 45.000 0.00 0.00 37.56 2.69
2054 2428 2.566913 TGTTAAGCTCGCTGGTTGAAA 58.433 42.857 0.00 0.00 37.56 2.69
2055 2429 2.289547 TGTTAAGCTCGCTGGTTGAAAC 59.710 45.455 0.00 2.47 37.56 2.78
2056 2430 2.248280 TAAGCTCGCTGGTTGAAACA 57.752 45.000 0.00 0.00 37.56 2.83
2057 2431 0.663153 AAGCTCGCTGGTTGAAACAC 59.337 50.000 0.00 0.00 34.77 3.32
2058 2432 1.082756 GCTCGCTGGTTGAAACACG 60.083 57.895 0.01 0.01 0.00 4.49
2059 2433 1.495584 GCTCGCTGGTTGAAACACGA 61.496 55.000 7.45 7.45 0.00 4.35
2060 2434 1.148310 CTCGCTGGTTGAAACACGAT 58.852 50.000 7.99 0.00 32.57 3.73
2061 2435 1.126846 CTCGCTGGTTGAAACACGATC 59.873 52.381 7.99 0.00 32.57 3.69
2062 2436 0.165944 CGCTGGTTGAAACACGATCC 59.834 55.000 0.00 0.00 0.00 3.36
2063 2437 1.234821 GCTGGTTGAAACACGATCCA 58.765 50.000 0.00 0.00 0.00 3.41
2064 2438 1.812571 GCTGGTTGAAACACGATCCAT 59.187 47.619 0.00 0.00 0.00 3.41
2065 2439 2.414559 GCTGGTTGAAACACGATCCATG 60.415 50.000 0.00 0.00 0.00 3.66
2066 2440 2.813754 CTGGTTGAAACACGATCCATGT 59.186 45.455 0.00 0.00 0.00 3.21
2067 2441 3.218453 TGGTTGAAACACGATCCATGTT 58.782 40.909 4.53 4.53 42.07 2.71
2068 2442 3.004210 TGGTTGAAACACGATCCATGTTG 59.996 43.478 10.03 0.00 40.16 3.33
2069 2443 2.979813 GTTGAAACACGATCCATGTTGC 59.020 45.455 10.03 9.04 40.16 4.17
2070 2444 1.196581 TGAAACACGATCCATGTTGCG 59.803 47.619 10.03 0.00 38.30 4.85
2071 2445 0.521291 AAACACGATCCATGTTGCGG 59.479 50.000 10.03 0.00 40.16 5.69
2072 2446 0.605319 AACACGATCCATGTTGCGGT 60.605 50.000 8.78 0.00 38.84 5.68
2073 2447 0.605319 ACACGATCCATGTTGCGGTT 60.605 50.000 0.00 0.00 0.00 4.44
2074 2448 0.179192 CACGATCCATGTTGCGGTTG 60.179 55.000 0.00 0.00 0.00 3.77
2075 2449 1.305219 ACGATCCATGTTGCGGTTGG 61.305 55.000 0.00 0.00 0.00 3.77
2076 2450 1.024046 CGATCCATGTTGCGGTTGGA 61.024 55.000 0.00 0.00 43.37 3.53
2077 2451 0.734889 GATCCATGTTGCGGTTGGAG 59.265 55.000 4.20 0.00 42.53 3.86
2078 2452 0.327924 ATCCATGTTGCGGTTGGAGA 59.672 50.000 4.20 0.00 42.53 3.71
2079 2453 0.109532 TCCATGTTGCGGTTGGAGAA 59.890 50.000 0.00 0.00 34.65 2.87
2080 2454 0.958091 CCATGTTGCGGTTGGAGAAA 59.042 50.000 0.00 0.00 31.94 2.52
2081 2455 1.335872 CCATGTTGCGGTTGGAGAAAC 60.336 52.381 0.00 0.00 38.12 2.78
2082 2456 1.336440 CATGTTGCGGTTGGAGAAACA 59.664 47.619 0.00 0.00 40.86 2.83
2083 2457 1.686355 TGTTGCGGTTGGAGAAACAT 58.314 45.000 0.00 0.00 40.86 2.71
2084 2458 2.028130 TGTTGCGGTTGGAGAAACATT 58.972 42.857 0.00 0.00 40.86 2.71
2085 2459 2.428890 TGTTGCGGTTGGAGAAACATTT 59.571 40.909 0.00 0.00 40.86 2.32
2086 2460 3.632604 TGTTGCGGTTGGAGAAACATTTA 59.367 39.130 0.00 0.00 40.86 1.40
2087 2461 3.907894 TGCGGTTGGAGAAACATTTAC 57.092 42.857 0.00 0.00 40.86 2.01
2088 2462 2.554893 TGCGGTTGGAGAAACATTTACC 59.445 45.455 0.00 0.00 40.86 2.85
2089 2463 2.817844 GCGGTTGGAGAAACATTTACCT 59.182 45.455 0.00 0.00 40.86 3.08
2090 2464 4.004982 GCGGTTGGAGAAACATTTACCTA 58.995 43.478 0.00 0.00 40.86 3.08
2091 2465 4.638865 GCGGTTGGAGAAACATTTACCTAT 59.361 41.667 0.00 0.00 40.86 2.57
2096 2470 5.250200 TGGAGAAACATTTACCTATTGCGT 58.750 37.500 0.00 0.00 0.00 5.24
2099 2473 6.238130 GGAGAAACATTTACCTATTGCGTCTC 60.238 42.308 0.00 0.00 0.00 3.36
2105 2479 1.300233 CCTATTGCGTCTCGGAGGC 60.300 63.158 4.96 1.56 42.76 4.70
2126 2500 3.068560 CAATTGAGTTGTGGGCCATTTG 58.931 45.455 10.70 0.62 33.01 2.32
2127 2501 1.047002 TTGAGTTGTGGGCCATTTGG 58.953 50.000 10.70 0.00 38.53 3.28
2137 2511 1.273327 GGGCCATTTGGTCAAACTCAG 59.727 52.381 4.39 0.00 42.93 3.35
2138 2512 1.337167 GGCCATTTGGTCAAACTCAGC 60.337 52.381 0.00 0.51 40.23 4.26
2159 2533 4.443266 AGCGACCGCAGAGAAGGC 62.443 66.667 16.97 0.00 44.88 4.35
2165 2539 4.421479 CGCAGAGAAGGCCGACGT 62.421 66.667 0.00 0.00 0.00 4.34
2170 2544 2.125512 AGAAGGCCGACGTGCATC 60.126 61.111 0.00 7.58 0.00 3.91
2173 2547 3.989698 AAGGCCGACGTGCATCGAG 62.990 63.158 11.19 3.08 45.13 4.04
2176 2550 1.515519 GCCGACGTGCATCGAGTTA 60.516 57.895 11.19 0.00 45.13 2.24
2178 2552 1.121240 CCGACGTGCATCGAGTTATC 58.879 55.000 11.19 0.00 45.13 1.75
2179 2553 1.533129 CCGACGTGCATCGAGTTATCA 60.533 52.381 11.19 0.00 45.13 2.15
2180 2554 2.182014 CGACGTGCATCGAGTTATCAA 58.818 47.619 14.18 0.00 45.13 2.57
2181 2555 2.035674 CGACGTGCATCGAGTTATCAAC 60.036 50.000 14.18 0.00 45.13 3.18
2182 2556 2.268298 ACGTGCATCGAGTTATCAACC 58.732 47.619 14.18 0.00 42.86 3.77
2183 2557 1.255342 CGTGCATCGAGTTATCAACCG 59.745 52.381 0.00 0.00 42.86 4.44
2184 2558 2.268298 GTGCATCGAGTTATCAACCGT 58.732 47.619 0.00 0.00 0.00 4.83
2186 2560 2.165641 TGCATCGAGTTATCAACCGTCT 59.834 45.455 0.00 0.00 0.00 4.18
2187 2561 2.789893 GCATCGAGTTATCAACCGTCTC 59.210 50.000 0.00 0.00 0.00 3.36
2188 2562 3.489398 GCATCGAGTTATCAACCGTCTCT 60.489 47.826 0.00 0.00 0.00 3.10
2189 2563 4.673441 CATCGAGTTATCAACCGTCTCTT 58.327 43.478 0.00 0.00 0.00 2.85
2224 2598 2.357952 CGCTTTTAGTGGGCCCTATTTC 59.642 50.000 25.70 8.30 0.00 2.17
2235 2609 3.282885 GGCCCTATTTCCAGAGTCAAAG 58.717 50.000 0.00 0.00 0.00 2.77
2288 2662 5.809001 TGTGATTTTTAGATGAGACTGGCT 58.191 37.500 0.00 0.00 0.00 4.75
2306 2680 8.658619 AGACTGGCTCAATATCTCTTGAAATAT 58.341 33.333 0.00 0.00 34.86 1.28
2307 2681 9.282569 GACTGGCTCAATATCTCTTGAAATATT 57.717 33.333 0.00 0.00 34.86 1.28
2310 2684 9.060347 TGGCTCAATATCTCTTGAAATATTCAC 57.940 33.333 0.00 0.00 39.87 3.18
2311 2685 8.510505 GGCTCAATATCTCTTGAAATATTCACC 58.489 37.037 0.00 0.00 39.87 4.02
2312 2686 8.510505 GCTCAATATCTCTTGAAATATTCACCC 58.489 37.037 0.00 0.00 39.87 4.61
2313 2687 9.790344 CTCAATATCTCTTGAAATATTCACCCT 57.210 33.333 0.00 0.00 39.87 4.34
2425 2807 4.460382 AGCATGTAAGACTTGTCAAATGGG 59.540 41.667 0.00 0.00 0.00 4.00
2471 2853 2.417515 CGCACCTTCTCCTCTTTCCTAC 60.418 54.545 0.00 0.00 0.00 3.18
2491 2873 0.034863 ACGCCCGTACCATTTCCAAT 60.035 50.000 0.00 0.00 0.00 3.16
2493 2875 0.102300 GCCCGTACCATTTCCAATGC 59.898 55.000 0.00 0.00 0.00 3.56
2500 2882 3.899052 ACCATTTCCAATGCATCCTTG 57.101 42.857 0.00 0.00 0.00 3.61
2529 2911 9.812347 TCTTAGGTTATTTGAATCATGCCATAT 57.188 29.630 0.00 0.00 0.00 1.78
2542 2924 8.922931 AATCATGCCATATCAAATGTACACTA 57.077 30.769 0.00 0.00 0.00 2.74
2543 2925 8.922931 ATCATGCCATATCAAATGTACACTAA 57.077 30.769 0.00 0.00 0.00 2.24
2579 2968 6.071952 GCTTTTACATTCACCTCTCCAAATCA 60.072 38.462 0.00 0.00 0.00 2.57
2582 2971 3.588842 ACATTCACCTCTCCAAATCAGGA 59.411 43.478 0.00 0.00 36.00 3.86
2597 2986 6.938596 CCAAATCAGGAGATATAATGTCAGCA 59.061 38.462 0.00 0.00 33.08 4.41
2613 3002 3.058639 GTCAGCAGAAGTGTTGGCTAAAG 60.059 47.826 0.00 0.00 36.62 1.85
2615 3004 3.058639 CAGCAGAAGTGTTGGCTAAAGAC 60.059 47.826 0.00 0.00 34.25 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 37 2.160813 CCACCGGAATTAGGTTTTCACG 59.839 50.000 9.46 0.00 40.59 4.35
125 133 0.251877 TGTCACCGACCCCATACAGA 60.252 55.000 0.00 0.00 0.00 3.41
130 138 2.927856 TGCTGTCACCGACCCCAT 60.928 61.111 0.00 0.00 0.00 4.00
154 162 3.191371 GCTTGGATGAAAAAGGACACGAT 59.809 43.478 0.00 0.00 0.00 3.73
155 163 2.552315 GCTTGGATGAAAAAGGACACGA 59.448 45.455 0.00 0.00 0.00 4.35
192 201 2.978010 CCAAGCCCAGAACGCGTT 60.978 61.111 26.97 26.97 0.00 4.84
252 261 2.077687 GGATCAGGGCATCCAAATGT 57.922 50.000 0.00 0.00 42.02 2.71
274 284 2.648454 CGCCGAAAAACCCCAAGG 59.352 61.111 0.00 0.00 40.04 3.61
432 446 2.290832 TGAAGATGCACCTACATGGCAA 60.291 45.455 0.00 0.00 41.43 4.52
490 521 1.896465 CCGAAGAAGTTGAGGTCCTCT 59.104 52.381 19.82 0.00 0.00 3.69
536 580 1.082756 GCCTCAAACACTTCACGCG 60.083 57.895 3.53 3.53 0.00 6.01
594 638 5.698545 AGTAAGAACTACAGAAAGCAGCAAG 59.301 40.000 0.00 0.00 32.84 4.01
595 639 5.611374 AGTAAGAACTACAGAAAGCAGCAA 58.389 37.500 0.00 0.00 32.84 3.91
596 640 5.011125 AGAGTAAGAACTACAGAAAGCAGCA 59.989 40.000 0.00 0.00 35.56 4.41
597 641 5.474825 AGAGTAAGAACTACAGAAAGCAGC 58.525 41.667 0.00 0.00 35.56 5.25
598 642 7.439655 ACAAAGAGTAAGAACTACAGAAAGCAG 59.560 37.037 0.00 0.00 35.56 4.24
599 643 7.272978 ACAAAGAGTAAGAACTACAGAAAGCA 58.727 34.615 0.00 0.00 35.56 3.91
600 644 7.716768 ACAAAGAGTAAGAACTACAGAAAGC 57.283 36.000 0.00 0.00 35.56 3.51
601 645 9.099454 ACAACAAAGAGTAAGAACTACAGAAAG 57.901 33.333 0.00 0.00 35.56 2.62
616 667 5.590259 ACAATTGCAGAGTACAACAAAGAGT 59.410 36.000 5.05 0.00 0.00 3.24
636 687 1.046472 TCGACCGGCCAGGATACAAT 61.046 55.000 18.74 0.00 45.00 2.71
653 704 7.596995 TCCAACTTTAAATTAACAAAGCCATCG 59.403 33.333 6.90 0.00 35.58 3.84
749 802 6.151144 AGCCTGTACAATGATTTTGAACCTAC 59.849 38.462 0.00 0.00 0.00 3.18
753 806 7.377766 TCTAGCCTGTACAATGATTTTGAAC 57.622 36.000 0.00 0.00 0.00 3.18
764 817 3.859627 GCGAACAGTTCTAGCCTGTACAA 60.860 47.826 11.60 0.00 42.17 2.41
768 821 0.037232 GGCGAACAGTTCTAGCCTGT 60.037 55.000 19.74 8.57 44.80 4.00
873 930 4.323477 TCGGGCCGGTTTGACCAG 62.323 66.667 27.98 0.00 38.47 4.00
888 945 6.981762 ATATAACGGAGTACTATGGTCTCG 57.018 41.667 0.00 0.00 45.00 4.04
931 1258 1.674441 GGCTTAAACGGTAAGGATGGC 59.326 52.381 9.41 0.00 0.00 4.40
969 1309 0.396139 TGGAGGATGATTGCTTGGGC 60.396 55.000 0.00 0.00 39.26 5.36
1226 1580 3.655810 GAGTCCTGCAGGGTGAGCG 62.656 68.421 32.23 5.15 36.25 5.03
1442 1805 2.575993 CACCTCCAGCAGAGACCG 59.424 66.667 5.40 0.00 46.50 4.79
1611 1974 5.453762 CCAATGCTAGTGATGTATCTGGTCA 60.454 44.000 0.00 0.00 0.00 4.02
1620 1983 2.236146 TCGGTTCCAATGCTAGTGATGT 59.764 45.455 0.00 0.00 0.00 3.06
1639 2002 4.724395 ACGAAATTGCGGCGATTGATCG 62.724 50.000 24.81 24.81 42.80 3.69
1654 2024 8.918961 TTTCACAAGTGATTTACAAACGAAAT 57.081 26.923 3.43 0.00 39.64 2.17
1655 2025 8.918961 ATTTCACAAGTGATTTACAAACGAAA 57.081 26.923 3.43 0.00 39.64 3.46
1668 2038 7.040755 ACGAAAATGATGGTATTTCACAAGTGA 60.041 33.333 0.00 0.00 37.91 3.41
1671 2041 7.594758 ACAACGAAAATGATGGTATTTCACAAG 59.405 33.333 0.00 0.00 33.68 3.16
1700 2071 4.396166 CCTGGTCGAATGCTAGTGATTTTT 59.604 41.667 0.00 0.00 0.00 1.94
1735 2106 4.142182 CCTTGCCTCACAAAAGAAAGTGAA 60.142 41.667 0.00 0.00 43.48 3.18
1736 2107 3.381272 CCTTGCCTCACAAAAGAAAGTGA 59.619 43.478 0.00 0.00 42.06 3.41
1737 2108 3.381272 TCCTTGCCTCACAAAAGAAAGTG 59.619 43.478 0.00 0.00 37.96 3.16
1738 2109 3.631250 TCCTTGCCTCACAAAAGAAAGT 58.369 40.909 0.00 0.00 37.96 2.66
1739 2110 4.038402 ACATCCTTGCCTCACAAAAGAAAG 59.962 41.667 0.00 0.00 37.96 2.62
1740 2111 3.960102 ACATCCTTGCCTCACAAAAGAAA 59.040 39.130 0.00 0.00 37.96 2.52
1744 2115 4.072131 GAGTACATCCTTGCCTCACAAAA 58.928 43.478 0.00 0.00 37.96 2.44
1749 2120 2.906389 ACAAGAGTACATCCTTGCCTCA 59.094 45.455 17.16 0.00 42.46 3.86
1750 2121 3.618690 ACAAGAGTACATCCTTGCCTC 57.381 47.619 17.16 0.00 42.46 4.70
1753 2124 3.189287 CCACAACAAGAGTACATCCTTGC 59.811 47.826 17.16 0.00 42.46 4.01
1754 2125 4.641396 TCCACAACAAGAGTACATCCTTG 58.359 43.478 16.20 16.20 43.84 3.61
1760 2131 6.576662 TTGTTTTTCCACAACAAGAGTACA 57.423 33.333 0.00 0.00 38.84 2.90
1761 2132 8.474006 AATTTGTTTTTCCACAACAAGAGTAC 57.526 30.769 0.00 0.00 43.31 2.73
1764 2135 6.237808 CCGAATTTGTTTTTCCACAACAAGAG 60.238 38.462 0.00 0.00 43.31 2.85
1765 2136 5.578727 CCGAATTTGTTTTTCCACAACAAGA 59.421 36.000 0.00 0.00 43.31 3.02
1770 2141 4.160626 AGGACCGAATTTGTTTTTCCACAA 59.839 37.500 0.00 0.00 34.76 3.33
1771 2142 3.702045 AGGACCGAATTTGTTTTTCCACA 59.298 39.130 0.00 0.00 0.00 4.17
1772 2143 4.048504 CAGGACCGAATTTGTTTTTCCAC 58.951 43.478 0.00 0.00 0.00 4.02
1775 2146 6.656314 AAAACAGGACCGAATTTGTTTTTC 57.344 33.333 13.15 0.00 46.00 2.29
1804 2178 3.499737 CGGACATGCAACTCGCCC 61.500 66.667 0.00 0.00 41.33 6.13
1805 2179 4.166011 GCGGACATGCAACTCGCC 62.166 66.667 13.52 1.19 41.33 5.54
1806 2180 4.166011 GGCGGACATGCAACTCGC 62.166 66.667 15.36 15.36 44.80 5.03
1807 2181 3.853330 CGGCGGACATGCAACTCG 61.853 66.667 0.00 0.00 36.28 4.18
1808 2182 3.499737 CCGGCGGACATGCAACTC 61.500 66.667 24.41 0.00 36.28 3.01
1809 2183 4.329545 ACCGGCGGACATGCAACT 62.330 61.111 35.78 2.80 36.28 3.16
1810 2184 4.101790 CACCGGCGGACATGCAAC 62.102 66.667 35.78 0.00 36.28 4.17
1811 2185 4.321966 TCACCGGCGGACATGCAA 62.322 61.111 35.78 2.24 36.28 4.08
1824 2198 0.532862 ATGCGATGAATCCGGTCACC 60.533 55.000 0.00 0.00 0.00 4.02
1825 2199 0.861837 GATGCGATGAATCCGGTCAC 59.138 55.000 0.00 0.00 0.00 3.67
1826 2200 0.249868 GGATGCGATGAATCCGGTCA 60.250 55.000 0.00 0.00 34.59 4.02
1827 2201 0.249868 TGGATGCGATGAATCCGGTC 60.250 55.000 0.00 0.00 45.69 4.79
1828 2202 0.250038 CTGGATGCGATGAATCCGGT 60.250 55.000 0.00 0.00 45.69 5.28
1829 2203 2.536725 CTGGATGCGATGAATCCGG 58.463 57.895 0.00 0.00 45.69 5.14
1830 2204 1.426423 CTCTGGATGCGATGAATCCG 58.574 55.000 0.00 0.00 45.69 4.18
1831 2205 1.155042 GCTCTGGATGCGATGAATCC 58.845 55.000 0.00 0.00 43.44 3.01
1832 2206 1.155042 GGCTCTGGATGCGATGAATC 58.845 55.000 0.00 0.00 0.00 2.52
1833 2207 0.602106 CGGCTCTGGATGCGATGAAT 60.602 55.000 0.00 0.00 0.00 2.57
1834 2208 1.227350 CGGCTCTGGATGCGATGAA 60.227 57.895 0.00 0.00 0.00 2.57
1835 2209 1.960040 AACGGCTCTGGATGCGATGA 61.960 55.000 0.00 0.00 0.00 2.92
1836 2210 1.522355 AACGGCTCTGGATGCGATG 60.522 57.895 0.00 0.00 0.00 3.84
1837 2211 1.522355 CAACGGCTCTGGATGCGAT 60.522 57.895 0.00 0.00 0.00 4.58
1838 2212 2.125552 CAACGGCTCTGGATGCGA 60.126 61.111 0.00 0.00 0.00 5.10
1839 2213 3.197790 CCAACGGCTCTGGATGCG 61.198 66.667 0.00 0.00 35.85 4.73
1840 2214 2.268920 TCCAACGGCTCTGGATGC 59.731 61.111 0.62 0.00 38.07 3.91
1843 2217 2.367202 GGGATCCAACGGCTCTGGA 61.367 63.158 15.23 6.85 46.86 3.86
1844 2218 2.190578 GGGATCCAACGGCTCTGG 59.809 66.667 15.23 0.00 35.05 3.86
1845 2219 1.450312 GTGGGATCCAACGGCTCTG 60.450 63.158 15.23 0.00 34.18 3.35
1846 2220 2.990479 GTGGGATCCAACGGCTCT 59.010 61.111 15.23 0.00 34.18 4.09
1847 2221 2.511600 CGTGGGATCCAACGGCTC 60.512 66.667 30.79 4.35 34.18 4.70
1848 2222 4.778143 GCGTGGGATCCAACGGCT 62.778 66.667 36.55 0.00 34.18 5.52
1850 2224 4.752879 ACGCGTGGGATCCAACGG 62.753 66.667 36.55 28.54 38.93 4.44
1851 2225 3.487202 CACGCGTGGGATCCAACG 61.487 66.667 33.37 33.37 39.97 4.10
1852 2226 2.047655 TCACGCGTGGGATCCAAC 60.048 61.111 36.41 12.33 34.18 3.77
1853 2227 2.047655 GTCACGCGTGGGATCCAA 60.048 61.111 36.41 14.91 34.18 3.53
1854 2228 3.295304 CTGTCACGCGTGGGATCCA 62.295 63.158 36.41 22.81 0.00 3.41
1855 2229 2.509336 CTGTCACGCGTGGGATCC 60.509 66.667 36.41 19.87 0.00 3.36
1856 2230 1.374252 AACTGTCACGCGTGGGATC 60.374 57.895 36.41 23.59 0.00 3.36
1857 2231 1.667830 CAACTGTCACGCGTGGGAT 60.668 57.895 36.41 19.27 0.00 3.85
1858 2232 2.279851 CAACTGTCACGCGTGGGA 60.280 61.111 36.41 22.57 0.00 4.37
1859 2233 2.702751 TACCAACTGTCACGCGTGGG 62.703 60.000 36.41 29.04 0.00 4.61
1860 2234 1.282248 CTACCAACTGTCACGCGTGG 61.282 60.000 36.41 23.79 0.00 4.94
1861 2235 0.596600 ACTACCAACTGTCACGCGTG 60.597 55.000 32.76 32.76 0.00 5.34
1862 2236 0.596600 CACTACCAACTGTCACGCGT 60.597 55.000 5.58 5.58 0.00 6.01
1863 2237 0.596600 ACACTACCAACTGTCACGCG 60.597 55.000 3.53 3.53 0.00 6.01
1864 2238 0.859232 CACACTACCAACTGTCACGC 59.141 55.000 0.00 0.00 0.00 5.34
1865 2239 2.124903 GTCACACTACCAACTGTCACG 58.875 52.381 0.00 0.00 0.00 4.35
1866 2240 2.480845 GGTCACACTACCAACTGTCAC 58.519 52.381 0.00 0.00 39.50 3.67
1867 2241 1.414919 GGGTCACACTACCAACTGTCA 59.585 52.381 0.00 0.00 41.67 3.58
1868 2242 1.604693 CGGGTCACACTACCAACTGTC 60.605 57.143 0.00 0.00 41.67 3.51
1869 2243 0.391597 CGGGTCACACTACCAACTGT 59.608 55.000 0.00 0.00 41.67 3.55
1870 2244 0.949105 GCGGGTCACACTACCAACTG 60.949 60.000 0.00 0.00 41.67 3.16
1871 2245 1.370064 GCGGGTCACACTACCAACT 59.630 57.895 0.00 0.00 41.67 3.16
1872 2246 1.670083 GGCGGGTCACACTACCAAC 60.670 63.158 0.00 0.00 41.67 3.77
1873 2247 2.107041 CTGGCGGGTCACACTACCAA 62.107 60.000 0.00 0.00 41.67 3.67
1874 2248 2.524640 TGGCGGGTCACACTACCA 60.525 61.111 0.00 0.00 41.67 3.25
1875 2249 2.264794 CTGGCGGGTCACACTACC 59.735 66.667 0.00 0.00 38.94 3.18
1876 2250 2.434359 GCTGGCGGGTCACACTAC 60.434 66.667 0.00 0.00 0.00 2.73
1877 2251 2.214216 AAGCTGGCGGGTCACACTA 61.214 57.895 0.00 0.00 0.00 2.74
1878 2252 3.560251 AAGCTGGCGGGTCACACT 61.560 61.111 0.00 0.00 0.00 3.55
1879 2253 3.357079 CAAGCTGGCGGGTCACAC 61.357 66.667 0.00 0.00 0.00 3.82
1882 2256 4.577677 TTGCAAGCTGGCGGGTCA 62.578 61.111 8.96 0.00 36.28 4.02
1883 2257 2.158561 ATTTTGCAAGCTGGCGGGTC 62.159 55.000 8.96 0.00 36.28 4.46
1884 2258 2.209315 ATTTTGCAAGCTGGCGGGT 61.209 52.632 8.96 0.00 36.28 5.28
1885 2259 1.738830 CATTTTGCAAGCTGGCGGG 60.739 57.895 8.96 0.00 36.28 6.13
1886 2260 0.734942 CTCATTTTGCAAGCTGGCGG 60.735 55.000 8.96 0.00 36.28 6.13
1887 2261 1.349259 GCTCATTTTGCAAGCTGGCG 61.349 55.000 8.96 0.00 36.28 5.69
1888 2262 1.017701 GGCTCATTTTGCAAGCTGGC 61.018 55.000 5.99 5.99 36.29 4.85
1889 2263 0.319083 TGGCTCATTTTGCAAGCTGG 59.681 50.000 7.24 0.00 36.29 4.85
1890 2264 1.999735 CATGGCTCATTTTGCAAGCTG 59.000 47.619 7.24 5.75 36.29 4.24
1891 2265 1.621814 ACATGGCTCATTTTGCAAGCT 59.378 42.857 7.24 0.00 36.29 3.74
1892 2266 2.088950 ACATGGCTCATTTTGCAAGC 57.911 45.000 0.00 0.00 35.27 4.01
1897 2271 4.717991 CAAATGCAACATGGCTCATTTTG 58.282 39.130 14.50 8.73 37.12 2.44
1898 2272 3.189702 GCAAATGCAACATGGCTCATTTT 59.810 39.130 14.50 0.00 37.12 1.82
1899 2273 2.745281 GCAAATGCAACATGGCTCATTT 59.255 40.909 12.50 12.50 39.04 2.32
1900 2274 2.027561 AGCAAATGCAACATGGCTCATT 60.028 40.909 8.28 0.26 45.16 2.57
1901 2275 1.553248 AGCAAATGCAACATGGCTCAT 59.447 42.857 8.28 0.00 45.16 2.90
1902 2276 0.970640 AGCAAATGCAACATGGCTCA 59.029 45.000 8.28 0.00 45.16 4.26
1903 2277 1.355971 CAGCAAATGCAACATGGCTC 58.644 50.000 8.28 0.00 45.16 4.70
1904 2278 0.036765 CCAGCAAATGCAACATGGCT 60.037 50.000 8.28 0.00 45.16 4.75
1905 2279 1.641123 GCCAGCAAATGCAACATGGC 61.641 55.000 17.19 17.19 46.43 4.40
1906 2280 0.036765 AGCCAGCAAATGCAACATGG 60.037 50.000 8.28 7.53 45.16 3.66
1907 2281 1.463056 CAAGCCAGCAAATGCAACATG 59.537 47.619 8.28 0.00 45.16 3.21
1908 2282 1.071071 ACAAGCCAGCAAATGCAACAT 59.929 42.857 8.28 0.00 45.16 2.71
1909 2283 0.464870 ACAAGCCAGCAAATGCAACA 59.535 45.000 8.28 0.00 45.16 3.33
1910 2284 0.863144 CACAAGCCAGCAAATGCAAC 59.137 50.000 8.28 0.00 45.16 4.17
1911 2285 0.249953 CCACAAGCCAGCAAATGCAA 60.250 50.000 8.28 0.00 45.16 4.08
1912 2286 1.368209 CCACAAGCCAGCAAATGCA 59.632 52.632 8.28 0.00 45.16 3.96
1913 2287 2.030958 GCCACAAGCCAGCAAATGC 61.031 57.895 0.00 0.00 37.02 3.56
1914 2288 0.669318 CTGCCACAAGCCAGCAAATG 60.669 55.000 0.00 0.00 42.71 2.32
1915 2289 1.117142 ACTGCCACAAGCCAGCAAAT 61.117 50.000 0.00 0.00 42.71 2.32
1916 2290 1.757731 ACTGCCACAAGCCAGCAAA 60.758 52.632 0.00 0.00 42.71 3.68
1917 2291 2.123769 ACTGCCACAAGCCAGCAA 60.124 55.556 0.00 0.00 42.71 3.91
1918 2292 2.908428 CACTGCCACAAGCCAGCA 60.908 61.111 0.00 0.00 42.71 4.41
1919 2293 4.353437 GCACTGCCACAAGCCAGC 62.353 66.667 0.00 0.00 42.71 4.85
1920 2294 1.812686 AATGCACTGCCACAAGCCAG 61.813 55.000 0.00 0.00 42.71 4.85
1921 2295 1.833492 AATGCACTGCCACAAGCCA 60.833 52.632 0.00 0.00 42.71 4.75
1922 2296 1.373748 CAATGCACTGCCACAAGCC 60.374 57.895 0.00 0.00 42.71 4.35
1923 2297 0.665369 GTCAATGCACTGCCACAAGC 60.665 55.000 0.00 0.00 44.14 4.01
1924 2298 0.038892 GGTCAATGCACTGCCACAAG 60.039 55.000 0.00 0.00 0.00 3.16
1925 2299 1.794151 CGGTCAATGCACTGCCACAA 61.794 55.000 8.85 0.00 0.00 3.33
1926 2300 2.260154 CGGTCAATGCACTGCCACA 61.260 57.895 8.85 0.00 0.00 4.17
1927 2301 2.562912 CGGTCAATGCACTGCCAC 59.437 61.111 8.85 0.00 0.00 5.01
1928 2302 2.672651 CCGGTCAATGCACTGCCA 60.673 61.111 8.85 0.00 0.00 4.92
1929 2303 2.359850 TCCGGTCAATGCACTGCC 60.360 61.111 0.00 0.00 0.00 4.85
1930 2304 2.690778 GGTCCGGTCAATGCACTGC 61.691 63.158 0.00 0.00 0.00 4.40
1931 2305 2.040544 GGGTCCGGTCAATGCACTG 61.041 63.158 0.00 0.00 0.00 3.66
1932 2306 2.351276 GGGTCCGGTCAATGCACT 59.649 61.111 0.00 0.00 0.00 4.40
1933 2307 3.124921 CGGGTCCGGTCAATGCAC 61.125 66.667 0.00 0.00 35.56 4.57
1934 2308 2.684192 AAACGGGTCCGGTCAATGCA 62.684 55.000 14.25 0.00 44.69 3.96
1935 2309 0.674269 TAAACGGGTCCGGTCAATGC 60.674 55.000 14.25 0.00 44.69 3.56
1936 2310 1.081094 GTAAACGGGTCCGGTCAATG 58.919 55.000 14.25 0.00 44.69 2.82
1937 2311 0.686224 TGTAAACGGGTCCGGTCAAT 59.314 50.000 14.25 0.00 44.69 2.57
1938 2312 0.467384 TTGTAAACGGGTCCGGTCAA 59.533 50.000 14.25 5.96 44.69 3.18
1939 2313 0.249826 GTTGTAAACGGGTCCGGTCA 60.250 55.000 14.25 0.00 44.69 4.02
1940 2314 2.532186 GTTGTAAACGGGTCCGGTC 58.468 57.895 14.25 0.00 44.69 4.79
1941 2315 4.777384 GTTGTAAACGGGTCCGGT 57.223 55.556 14.25 3.87 44.69 5.28
1958 2332 5.049612 GGATCATAGTGCAACATGACTCATG 60.050 44.000 16.22 16.22 46.18 3.07
1959 2333 5.061853 GGATCATAGTGCAACATGACTCAT 58.938 41.667 12.38 0.00 41.43 2.90
1960 2334 4.080975 TGGATCATAGTGCAACATGACTCA 60.081 41.667 12.38 10.86 41.43 3.41
1961 2335 4.445453 TGGATCATAGTGCAACATGACTC 58.555 43.478 12.38 10.92 41.43 3.36
1962 2336 4.492494 TGGATCATAGTGCAACATGACT 57.508 40.909 12.38 0.00 41.43 3.41
1963 2337 4.577693 ACATGGATCATAGTGCAACATGAC 59.422 41.667 12.38 7.74 41.43 3.06
1964 2338 4.784177 ACATGGATCATAGTGCAACATGA 58.216 39.130 12.48 12.48 41.43 3.07
1965 2339 5.163591 ACAACATGGATCATAGTGCAACATG 60.164 40.000 0.00 0.00 41.43 3.21
1966 2340 4.951715 ACAACATGGATCATAGTGCAACAT 59.048 37.500 0.00 0.00 41.43 2.71
1967 2341 4.156373 CACAACATGGATCATAGTGCAACA 59.844 41.667 0.00 0.00 41.43 3.33
1968 2342 4.665212 CACAACATGGATCATAGTGCAAC 58.335 43.478 0.00 0.00 0.00 4.17
1969 2343 3.129113 GCACAACATGGATCATAGTGCAA 59.871 43.478 18.44 0.00 41.45 4.08
1970 2344 2.684374 GCACAACATGGATCATAGTGCA 59.316 45.455 18.44 0.00 41.45 4.57
1971 2345 2.947652 AGCACAACATGGATCATAGTGC 59.052 45.455 16.93 16.93 41.77 4.40
1972 2346 3.246936 CGAGCACAACATGGATCATAGTG 59.753 47.826 0.00 0.00 0.00 2.74
1973 2347 3.461061 CGAGCACAACATGGATCATAGT 58.539 45.455 0.00 0.00 0.00 2.12
1974 2348 2.804527 CCGAGCACAACATGGATCATAG 59.195 50.000 0.00 0.00 0.00 2.23
1975 2349 2.485302 CCCGAGCACAACATGGATCATA 60.485 50.000 0.00 0.00 0.00 2.15
1976 2350 1.671979 CCGAGCACAACATGGATCAT 58.328 50.000 0.00 0.00 0.00 2.45
1977 2351 0.392863 CCCGAGCACAACATGGATCA 60.393 55.000 0.00 0.00 0.00 2.92
1978 2352 0.107703 TCCCGAGCACAACATGGATC 60.108 55.000 0.00 0.00 0.00 3.36
1979 2353 0.327924 TTCCCGAGCACAACATGGAT 59.672 50.000 0.00 0.00 0.00 3.41
1980 2354 0.109532 TTTCCCGAGCACAACATGGA 59.890 50.000 0.00 0.00 0.00 3.41
1981 2355 1.133025 GATTTCCCGAGCACAACATGG 59.867 52.381 0.00 0.00 0.00 3.66
1982 2356 1.133025 GGATTTCCCGAGCACAACATG 59.867 52.381 0.00 0.00 0.00 3.21
1983 2357 1.271871 TGGATTTCCCGAGCACAACAT 60.272 47.619 0.00 0.00 37.93 2.71
1984 2358 0.109532 TGGATTTCCCGAGCACAACA 59.890 50.000 0.00 0.00 37.93 3.33
1985 2359 1.401905 GATGGATTTCCCGAGCACAAC 59.598 52.381 0.00 0.00 37.93 3.32
1986 2360 1.281867 AGATGGATTTCCCGAGCACAA 59.718 47.619 0.00 0.00 37.93 3.33
1987 2361 0.911769 AGATGGATTTCCCGAGCACA 59.088 50.000 0.00 0.00 37.93 4.57
1988 2362 1.943340 GAAGATGGATTTCCCGAGCAC 59.057 52.381 0.00 0.00 37.93 4.40
1989 2363 1.134098 GGAAGATGGATTTCCCGAGCA 60.134 52.381 0.00 0.00 38.51 4.26
1990 2364 1.134098 TGGAAGATGGATTTCCCGAGC 60.134 52.381 1.88 0.00 42.79 5.03
1991 2365 2.945668 GTTGGAAGATGGATTTCCCGAG 59.054 50.000 1.88 0.00 42.79 4.63
1992 2366 2.356741 GGTTGGAAGATGGATTTCCCGA 60.357 50.000 1.88 0.00 42.79 5.14
1993 2367 2.024414 GGTTGGAAGATGGATTTCCCG 58.976 52.381 1.88 0.00 42.79 5.14
1994 2368 2.388735 GGGTTGGAAGATGGATTTCCC 58.611 52.381 1.88 0.00 42.79 3.97
1995 2369 2.388735 GGGGTTGGAAGATGGATTTCC 58.611 52.381 0.00 0.00 43.56 3.13
1996 2370 2.024414 CGGGGTTGGAAGATGGATTTC 58.976 52.381 0.00 0.00 0.00 2.17
1997 2371 1.341976 CCGGGGTTGGAAGATGGATTT 60.342 52.381 0.00 0.00 0.00 2.17
1998 2372 0.258774 CCGGGGTTGGAAGATGGATT 59.741 55.000 0.00 0.00 0.00 3.01
1999 2373 0.919289 ACCGGGGTTGGAAGATGGAT 60.919 55.000 6.32 0.00 0.00 3.41
2000 2374 1.137594 AACCGGGGTTGGAAGATGGA 61.138 55.000 6.32 0.00 36.91 3.41
2001 2375 0.251608 AAACCGGGGTTGGAAGATGG 60.252 55.000 6.32 0.00 38.47 3.51
2002 2376 0.887933 CAAACCGGGGTTGGAAGATG 59.112 55.000 17.25 0.00 38.47 2.90
2003 2377 0.898326 GCAAACCGGGGTTGGAAGAT 60.898 55.000 25.31 0.00 38.47 2.40
2004 2378 1.529713 GCAAACCGGGGTTGGAAGA 60.530 57.895 25.31 0.00 38.47 2.87
2005 2379 1.395826 TTGCAAACCGGGGTTGGAAG 61.396 55.000 25.43 1.44 38.47 3.46
2006 2380 0.760945 ATTGCAAACCGGGGTTGGAA 60.761 50.000 29.95 29.95 38.47 3.53
2007 2381 0.112606 TATTGCAAACCGGGGTTGGA 59.887 50.000 25.31 20.85 38.47 3.53
2008 2382 1.190643 ATATTGCAAACCGGGGTTGG 58.809 50.000 25.31 9.44 38.47 3.77
2009 2383 3.445805 ACTTATATTGCAAACCGGGGTTG 59.554 43.478 20.55 20.55 38.47 3.77
2010 2384 3.697542 GACTTATATTGCAAACCGGGGTT 59.302 43.478 6.32 0.00 40.45 4.11
2011 2385 3.284617 GACTTATATTGCAAACCGGGGT 58.715 45.455 6.32 0.00 0.00 4.95
2012 2386 3.283751 TGACTTATATTGCAAACCGGGG 58.716 45.455 6.32 0.00 0.00 5.73
2013 2387 4.338118 ACATGACTTATATTGCAAACCGGG 59.662 41.667 6.32 0.00 0.00 5.73
2014 2388 5.499139 ACATGACTTATATTGCAAACCGG 57.501 39.130 1.71 0.00 0.00 5.28
2015 2389 7.165812 GCTTAACATGACTTATATTGCAAACCG 59.834 37.037 1.71 0.00 0.00 4.44
2016 2390 8.190784 AGCTTAACATGACTTATATTGCAAACC 58.809 33.333 1.71 0.00 0.00 3.27
2017 2391 9.226345 GAGCTTAACATGACTTATATTGCAAAC 57.774 33.333 1.71 0.00 0.00 2.93
2018 2392 8.122330 CGAGCTTAACATGACTTATATTGCAAA 58.878 33.333 1.71 0.00 0.00 3.68
2019 2393 7.630026 CGAGCTTAACATGACTTATATTGCAA 58.370 34.615 0.00 0.00 0.00 4.08
2020 2394 6.292865 GCGAGCTTAACATGACTTATATTGCA 60.293 38.462 0.00 0.00 0.00 4.08
2021 2395 6.073548 AGCGAGCTTAACATGACTTATATTGC 60.074 38.462 0.00 0.00 0.00 3.56
2022 2396 7.286508 CAGCGAGCTTAACATGACTTATATTG 58.713 38.462 0.00 0.00 0.00 1.90
2023 2397 6.425114 CCAGCGAGCTTAACATGACTTATATT 59.575 38.462 0.00 0.00 0.00 1.28
2024 2398 5.928839 CCAGCGAGCTTAACATGACTTATAT 59.071 40.000 0.00 0.00 0.00 0.86
2025 2399 5.163447 ACCAGCGAGCTTAACATGACTTATA 60.163 40.000 0.00 0.00 0.00 0.98
2026 2400 4.122776 CCAGCGAGCTTAACATGACTTAT 58.877 43.478 0.00 0.00 0.00 1.73
2027 2401 3.056107 ACCAGCGAGCTTAACATGACTTA 60.056 43.478 0.00 0.00 0.00 2.24
2028 2402 2.289694 ACCAGCGAGCTTAACATGACTT 60.290 45.455 0.00 0.00 0.00 3.01
2029 2403 1.276421 ACCAGCGAGCTTAACATGACT 59.724 47.619 0.00 0.00 0.00 3.41
2030 2404 1.726853 ACCAGCGAGCTTAACATGAC 58.273 50.000 0.00 0.00 0.00 3.06
2031 2405 2.076100 CAACCAGCGAGCTTAACATGA 58.924 47.619 0.00 0.00 0.00 3.07
2032 2406 2.076100 TCAACCAGCGAGCTTAACATG 58.924 47.619 0.00 0.00 0.00 3.21
2033 2407 2.472695 TCAACCAGCGAGCTTAACAT 57.527 45.000 0.00 0.00 0.00 2.71
2034 2408 2.248280 TTCAACCAGCGAGCTTAACA 57.752 45.000 0.00 0.00 0.00 2.41
2035 2409 2.289547 TGTTTCAACCAGCGAGCTTAAC 59.710 45.455 0.00 0.00 0.00 2.01
2036 2410 2.289547 GTGTTTCAACCAGCGAGCTTAA 59.710 45.455 0.00 0.00 0.00 1.85
2037 2411 1.871039 GTGTTTCAACCAGCGAGCTTA 59.129 47.619 0.00 0.00 0.00 3.09
2038 2412 0.663153 GTGTTTCAACCAGCGAGCTT 59.337 50.000 0.00 0.00 0.00 3.74
2039 2413 1.498865 CGTGTTTCAACCAGCGAGCT 61.499 55.000 0.00 0.00 0.00 4.09
2040 2414 1.082756 CGTGTTTCAACCAGCGAGC 60.083 57.895 0.00 0.00 0.00 5.03
2041 2415 1.126846 GATCGTGTTTCAACCAGCGAG 59.873 52.381 0.00 0.00 33.01 5.03
2042 2416 1.144969 GATCGTGTTTCAACCAGCGA 58.855 50.000 0.00 0.00 33.62 4.93
2043 2417 0.165944 GGATCGTGTTTCAACCAGCG 59.834 55.000 0.00 0.00 0.00 5.18
2044 2418 1.234821 TGGATCGTGTTTCAACCAGC 58.765 50.000 0.00 0.00 0.00 4.85
2045 2419 2.813754 ACATGGATCGTGTTTCAACCAG 59.186 45.455 0.00 0.00 28.11 4.00
2046 2420 2.857483 ACATGGATCGTGTTTCAACCA 58.143 42.857 0.00 0.00 28.11 3.67
2047 2421 3.564511 CAACATGGATCGTGTTTCAACC 58.435 45.455 11.18 0.00 40.99 3.77
2048 2422 2.979813 GCAACATGGATCGTGTTTCAAC 59.020 45.455 11.18 1.24 40.99 3.18
2049 2423 2.350293 CGCAACATGGATCGTGTTTCAA 60.350 45.455 11.18 0.00 40.99 2.69
2050 2424 1.196581 CGCAACATGGATCGTGTTTCA 59.803 47.619 11.18 0.00 40.99 2.69
2051 2425 1.465689 CCGCAACATGGATCGTGTTTC 60.466 52.381 11.18 7.12 40.99 2.78
2052 2426 0.521291 CCGCAACATGGATCGTGTTT 59.479 50.000 11.18 0.00 40.99 2.83
2053 2427 0.605319 ACCGCAACATGGATCGTGTT 60.605 50.000 8.75 8.75 43.30 3.32
2054 2428 0.605319 AACCGCAACATGGATCGTGT 60.605 50.000 0.00 0.00 34.83 4.49
2055 2429 0.179192 CAACCGCAACATGGATCGTG 60.179 55.000 0.00 0.00 0.00 4.35
2056 2430 1.305219 CCAACCGCAACATGGATCGT 61.305 55.000 0.00 0.00 36.27 3.73
2057 2431 1.024046 TCCAACCGCAACATGGATCG 61.024 55.000 0.00 0.00 38.30 3.69
2058 2432 0.734889 CTCCAACCGCAACATGGATC 59.265 55.000 0.00 0.00 42.12 3.36
2059 2433 0.327924 TCTCCAACCGCAACATGGAT 59.672 50.000 0.00 0.00 42.12 3.41
2060 2434 0.109532 TTCTCCAACCGCAACATGGA 59.890 50.000 0.00 0.00 40.84 3.41
2061 2435 0.958091 TTTCTCCAACCGCAACATGG 59.042 50.000 0.00 0.00 35.49 3.66
2062 2436 1.336440 TGTTTCTCCAACCGCAACATG 59.664 47.619 0.00 0.00 33.97 3.21
2063 2437 1.686355 TGTTTCTCCAACCGCAACAT 58.314 45.000 0.00 0.00 33.97 2.71
2064 2438 1.686355 ATGTTTCTCCAACCGCAACA 58.314 45.000 0.00 0.00 33.97 3.33
2065 2439 2.793278 AATGTTTCTCCAACCGCAAC 57.207 45.000 0.00 0.00 33.97 4.17
2066 2440 3.004944 GGTAAATGTTTCTCCAACCGCAA 59.995 43.478 0.00 0.00 33.97 4.85
2067 2441 2.554893 GGTAAATGTTTCTCCAACCGCA 59.445 45.455 0.00 0.00 33.97 5.69
2068 2442 2.817844 AGGTAAATGTTTCTCCAACCGC 59.182 45.455 0.00 0.00 33.97 5.68
2069 2443 6.551736 CAATAGGTAAATGTTTCTCCAACCG 58.448 40.000 0.00 0.00 33.97 4.44
2070 2444 6.330278 GCAATAGGTAAATGTTTCTCCAACC 58.670 40.000 0.00 0.00 33.97 3.77
2071 2445 6.027749 CGCAATAGGTAAATGTTTCTCCAAC 58.972 40.000 0.00 0.00 35.71 3.77
2072 2446 5.708230 ACGCAATAGGTAAATGTTTCTCCAA 59.292 36.000 0.00 0.00 0.00 3.53
2073 2447 5.250200 ACGCAATAGGTAAATGTTTCTCCA 58.750 37.500 0.00 0.00 0.00 3.86
2074 2448 5.585047 AGACGCAATAGGTAAATGTTTCTCC 59.415 40.000 0.00 0.00 0.00 3.71
2075 2449 6.508088 CGAGACGCAATAGGTAAATGTTTCTC 60.508 42.308 0.00 0.00 0.00 2.87
2076 2450 5.291128 CGAGACGCAATAGGTAAATGTTTCT 59.709 40.000 0.00 0.00 0.00 2.52
2077 2451 5.490213 CGAGACGCAATAGGTAAATGTTTC 58.510 41.667 0.00 0.00 0.00 2.78
2078 2452 4.331717 CCGAGACGCAATAGGTAAATGTTT 59.668 41.667 0.00 0.00 0.00 2.83
2079 2453 3.869246 CCGAGACGCAATAGGTAAATGTT 59.131 43.478 0.00 0.00 0.00 2.71
2080 2454 3.131577 TCCGAGACGCAATAGGTAAATGT 59.868 43.478 0.00 0.00 0.00 2.71
2081 2455 3.713288 TCCGAGACGCAATAGGTAAATG 58.287 45.455 0.00 0.00 0.00 2.32
2082 2456 3.243771 CCTCCGAGACGCAATAGGTAAAT 60.244 47.826 0.00 0.00 0.00 1.40
2083 2457 2.100252 CCTCCGAGACGCAATAGGTAAA 59.900 50.000 0.00 0.00 0.00 2.01
2084 2458 1.679680 CCTCCGAGACGCAATAGGTAA 59.320 52.381 0.00 0.00 0.00 2.85
2085 2459 1.315690 CCTCCGAGACGCAATAGGTA 58.684 55.000 0.00 0.00 0.00 3.08
2086 2460 2.017559 GCCTCCGAGACGCAATAGGT 62.018 60.000 0.00 0.00 0.00 3.08
2087 2461 1.300233 GCCTCCGAGACGCAATAGG 60.300 63.158 0.00 0.00 0.00 2.57
2088 2462 0.179111 TTGCCTCCGAGACGCAATAG 60.179 55.000 7.70 0.00 37.58 1.73
2089 2463 1.894512 TTGCCTCCGAGACGCAATA 59.105 52.632 7.70 0.00 37.58 1.90
2090 2464 1.221840 ATTGCCTCCGAGACGCAAT 59.778 52.632 15.32 15.32 45.51 3.56
2091 2465 1.003839 AATTGCCTCCGAGACGCAA 60.004 52.632 12.64 12.64 45.77 4.85
2096 2470 1.347707 ACAACTCAATTGCCTCCGAGA 59.652 47.619 0.00 0.00 42.62 4.04
2099 2473 0.523072 CCACAACTCAATTGCCTCCG 59.477 55.000 0.00 0.00 42.62 4.63
2105 2479 3.068560 CAAATGGCCCACAACTCAATTG 58.931 45.455 0.00 0.00 44.60 2.32
2107 2481 1.624813 CCAAATGGCCCACAACTCAAT 59.375 47.619 0.00 0.00 0.00 2.57
2126 2500 1.294659 CGCTGGAGCTGAGTTTGACC 61.295 60.000 0.00 0.00 39.32 4.02
2127 2501 0.319900 TCGCTGGAGCTGAGTTTGAC 60.320 55.000 0.00 0.00 39.32 3.18
2138 2512 2.880719 CTTCTCTGCGGTCGCTGGAG 62.881 65.000 22.02 22.02 42.51 3.86
2159 2533 1.121240 GATAACTCGATGCACGTCGG 58.879 55.000 11.98 5.94 41.74 4.79
2161 2535 2.281762 GGTTGATAACTCGATGCACGTC 59.718 50.000 8.22 0.00 43.13 4.34
2164 2538 2.268298 ACGGTTGATAACTCGATGCAC 58.732 47.619 0.00 0.00 0.00 4.57
2165 2539 2.165641 AGACGGTTGATAACTCGATGCA 59.834 45.455 0.00 0.00 0.00 3.96
2170 2544 5.396484 TGTAAAGAGACGGTTGATAACTCG 58.604 41.667 0.00 0.00 33.53 4.18
2173 2547 7.803724 ACATTTGTAAAGAGACGGTTGATAAC 58.196 34.615 0.00 0.00 0.00 1.89
2176 2550 6.877611 AACATTTGTAAAGAGACGGTTGAT 57.122 33.333 0.00 0.00 0.00 2.57
2178 2552 5.912955 GGAAACATTTGTAAAGAGACGGTTG 59.087 40.000 0.00 0.00 0.00 3.77
2179 2553 5.009310 GGGAAACATTTGTAAAGAGACGGTT 59.991 40.000 0.00 0.00 0.00 4.44
2180 2554 4.517832 GGGAAACATTTGTAAAGAGACGGT 59.482 41.667 0.00 0.00 0.00 4.83
2181 2555 4.378046 CGGGAAACATTTGTAAAGAGACGG 60.378 45.833 0.00 0.00 0.00 4.79
2182 2556 4.708601 CGGGAAACATTTGTAAAGAGACG 58.291 43.478 0.00 0.00 0.00 4.18
2183 2557 4.215613 AGCGGGAAACATTTGTAAAGAGAC 59.784 41.667 0.00 0.00 0.00 3.36
2184 2558 4.394729 AGCGGGAAACATTTGTAAAGAGA 58.605 39.130 0.00 0.00 0.00 3.10
2186 2560 5.523438 AAAGCGGGAAACATTTGTAAAGA 57.477 34.783 0.00 0.00 0.00 2.52
2187 2561 6.921307 ACTAAAAGCGGGAAACATTTGTAAAG 59.079 34.615 0.00 0.00 0.00 1.85
2188 2562 6.697892 CACTAAAAGCGGGAAACATTTGTAAA 59.302 34.615 0.00 0.00 0.00 2.01
2189 2563 6.210078 CACTAAAAGCGGGAAACATTTGTAA 58.790 36.000 0.00 0.00 0.00 2.41
2257 2631 8.134895 GTCTCATCTAAAAATCACAACAACCAA 58.865 33.333 0.00 0.00 0.00 3.67
2258 2632 7.502226 AGTCTCATCTAAAAATCACAACAACCA 59.498 33.333 0.00 0.00 0.00 3.67
2259 2633 7.805071 CAGTCTCATCTAAAAATCACAACAACC 59.195 37.037 0.00 0.00 0.00 3.77
2260 2634 7.805071 CCAGTCTCATCTAAAAATCACAACAAC 59.195 37.037 0.00 0.00 0.00 3.32
2261 2635 7.522073 GCCAGTCTCATCTAAAAATCACAACAA 60.522 37.037 0.00 0.00 0.00 2.83
2263 2637 6.150140 AGCCAGTCTCATCTAAAAATCACAAC 59.850 38.462 0.00 0.00 0.00 3.32
2264 2638 6.240894 AGCCAGTCTCATCTAAAAATCACAA 58.759 36.000 0.00 0.00 0.00 3.33
2265 2639 5.809001 AGCCAGTCTCATCTAAAAATCACA 58.191 37.500 0.00 0.00 0.00 3.58
2266 2640 5.877012 TGAGCCAGTCTCATCTAAAAATCAC 59.123 40.000 0.00 0.00 46.34 3.06
2315 2689 8.406297 GGATCGCTAGGAAAAACTATGATTTTT 58.594 33.333 0.00 2.18 42.94 1.94
2325 2707 7.123160 GATCATTAGGATCGCTAGGAAAAAC 57.877 40.000 0.00 0.00 42.81 2.43
2413 2795 3.328505 GCACCAATTCCCATTTGACAAG 58.671 45.455 0.00 0.00 0.00 3.16
2437 2819 2.098293 GGTGCGGATGAACCATCAC 58.902 57.895 8.91 0.00 44.22 3.06
2438 2820 4.635769 GGTGCGGATGAACCATCA 57.364 55.556 8.91 0.00 44.22 3.07
2471 2853 0.956410 TTGGAAATGGTACGGGCGTG 60.956 55.000 0.00 0.00 0.00 5.34
2491 2873 7.450014 TCAAATAACCTAAGAAACAAGGATGCA 59.550 33.333 0.00 0.00 36.66 3.96
2500 2882 8.250332 TGGCATGATTCAAATAACCTAAGAAAC 58.750 33.333 0.00 0.00 0.00 2.78
2579 2968 6.326064 ACACTTCTGCTGACATTATATCTCCT 59.674 38.462 0.00 0.00 0.00 3.69
2582 2971 6.765036 CCAACACTTCTGCTGACATTATATCT 59.235 38.462 0.00 0.00 0.00 1.98
2597 2986 5.552178 CCTAAGTCTTTAGCCAACACTTCT 58.448 41.667 0.00 0.00 35.88 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.