Multiple sequence alignment - TraesCS5B01G478000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G478000 chr5B 100.000 3306 0 0 1 3306 650029301 650032606 0 6106
1 TraesCS5B01G478000 chr5A 91.257 3397 127 65 8 3304 644858114 644861440 0 4471
2 TraesCS5B01G478000 chr5D 94.245 2589 67 33 741 3306 517446097 517448626 0 3880
3 TraesCS5B01G478000 chr5D 84.869 727 40 21 6 690 517445029 517445727 0 669


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G478000 chr5B 650029301 650032606 3305 False 6106.0 6106 100.000 1 3306 1 chr5B.!!$F1 3305
1 TraesCS5B01G478000 chr5A 644858114 644861440 3326 False 4471.0 4471 91.257 8 3304 1 chr5A.!!$F1 3296
2 TraesCS5B01G478000 chr5D 517445029 517448626 3597 False 2274.5 3880 89.557 6 3306 2 chr5D.!!$F1 3300

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
923 1309 0.036199 ACCACCGCGGCAATTAGTTA 60.036 50.0 28.58 0.0 39.03 2.24 F
957 1343 0.109086 AGCTTGACGAGGTGTGATCG 60.109 55.0 0.00 0.0 45.54 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2148 2548 0.385223 GTAGTCGTCGTCAGCGTGTT 60.385 55.000 0.00 0.0 39.49 3.32 R
2760 3177 1.071228 CTAGCTGCATGGCCTGACATA 59.929 52.381 3.32 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.038837 GTGAGCAAGTAACCGGCCC 61.039 63.158 0.00 0.00 0.00 5.80
62 63 3.179265 CCGCGACTGGCTTACACG 61.179 66.667 8.23 0.00 40.44 4.49
74 75 3.932710 TGGCTTACACGAAGTTGATGATC 59.067 43.478 0.00 0.00 41.61 2.92
75 76 3.932710 GGCTTACACGAAGTTGATGATCA 59.067 43.478 0.00 0.00 41.61 2.92
76 77 4.033358 GGCTTACACGAAGTTGATGATCAG 59.967 45.833 0.09 0.00 41.61 2.90
82 83 3.193263 CGAAGTTGATGATCAGTCCCTG 58.807 50.000 0.09 0.00 0.00 4.45
83 84 3.368843 CGAAGTTGATGATCAGTCCCTGT 60.369 47.826 0.09 0.00 32.61 4.00
84 85 3.623906 AGTTGATGATCAGTCCCTGTG 57.376 47.619 0.09 0.00 32.61 3.66
85 86 2.909006 AGTTGATGATCAGTCCCTGTGT 59.091 45.455 0.09 0.00 32.61 3.72
86 87 3.005554 GTTGATGATCAGTCCCTGTGTG 58.994 50.000 0.09 0.00 32.61 3.82
87 88 1.065926 TGATGATCAGTCCCTGTGTGC 60.066 52.381 0.09 0.00 32.61 4.57
88 89 0.107993 ATGATCAGTCCCTGTGTGCG 60.108 55.000 0.09 0.00 32.61 5.34
102 103 2.115052 TGCGCCATTGGTCAGGTT 59.885 55.556 4.18 0.00 0.00 3.50
227 228 8.919145 AGAAAATAAATCAACCAGTGTAAACCA 58.081 29.630 0.00 0.00 0.00 3.67
298 299 5.756195 TGTTAATACAAGCATGATCTGGC 57.244 39.130 0.00 0.00 0.00 4.85
299 300 4.273235 TGTTAATACAAGCATGATCTGGCG 59.727 41.667 0.00 0.00 34.54 5.69
300 301 2.916702 ATACAAGCATGATCTGGCGA 57.083 45.000 0.00 0.00 34.54 5.54
301 302 1.939974 TACAAGCATGATCTGGCGAC 58.060 50.000 0.00 0.00 34.54 5.19
302 303 0.251354 ACAAGCATGATCTGGCGACT 59.749 50.000 0.00 0.00 34.54 4.18
303 304 0.656259 CAAGCATGATCTGGCGACTG 59.344 55.000 0.00 0.00 34.54 3.51
304 305 0.463295 AAGCATGATCTGGCGACTGG 60.463 55.000 0.00 0.00 34.54 4.00
349 358 4.564769 CGCACTTTTCTCTTCTCCATAGAC 59.435 45.833 0.00 0.00 0.00 2.59
355 364 7.453126 ACTTTTCTCTTCTCCATAGACAGAGAA 59.547 37.037 16.95 16.95 44.02 2.87
361 370 7.406916 TCTTCTCCATAGACAGAGAACTACTT 58.593 38.462 0.00 0.00 42.67 2.24
388 397 3.942829 TCACTTTCATCCAACTGGCTAG 58.057 45.455 0.00 0.00 34.44 3.42
389 398 3.327757 TCACTTTCATCCAACTGGCTAGT 59.672 43.478 0.00 0.00 39.32 2.57
404 421 2.289444 GGCTAGTTGAAGTGGTAGTGCA 60.289 50.000 0.00 0.00 0.00 4.57
418 435 3.205536 TGCAACAACGCGGCAAGA 61.206 55.556 12.47 0.00 34.05 3.02
448 466 3.846405 TTCCCCCGGAGTGTGAGCT 62.846 63.158 0.73 0.00 31.21 4.09
477 501 1.278637 GTTGCACCGGAGTCAAACG 59.721 57.895 9.46 0.00 0.00 3.60
482 506 2.646719 CCGGAGTCAAACGGTCGA 59.353 61.111 0.00 0.00 44.85 4.20
483 507 1.214589 CCGGAGTCAAACGGTCGAT 59.785 57.895 0.00 0.00 44.85 3.59
484 508 0.801067 CCGGAGTCAAACGGTCGATC 60.801 60.000 0.00 0.00 44.85 3.69
485 509 0.801067 CGGAGTCAAACGGTCGATCC 60.801 60.000 0.00 0.00 0.00 3.36
594 618 2.125326 CGCCGGGACATCTCTACCA 61.125 63.158 2.18 0.00 0.00 3.25
596 620 1.043673 GCCGGGACATCTCTACCACT 61.044 60.000 2.18 0.00 0.00 4.00
598 622 1.410365 CCGGGACATCTCTACCACTCT 60.410 57.143 0.00 0.00 0.00 3.24
599 623 2.158652 CCGGGACATCTCTACCACTCTA 60.159 54.545 0.00 0.00 0.00 2.43
600 624 3.142951 CGGGACATCTCTACCACTCTAG 58.857 54.545 0.00 0.00 0.00 2.43
707 760 2.574018 CGGCCACTCACTCACCTCA 61.574 63.158 2.24 0.00 0.00 3.86
709 762 1.373497 GCCACTCACTCACCTCACG 60.373 63.158 0.00 0.00 0.00 4.35
772 1139 1.337384 TATCCACCCACATGCGCTCT 61.337 55.000 9.73 0.00 0.00 4.09
773 1140 2.599645 ATCCACCCACATGCGCTCTC 62.600 60.000 9.73 0.00 0.00 3.20
774 1141 2.821366 CACCCACATGCGCTCTCC 60.821 66.667 9.73 0.00 0.00 3.71
775 1142 4.101448 ACCCACATGCGCTCTCCC 62.101 66.667 9.73 0.00 0.00 4.30
862 1248 5.123227 TCTCTTCTCTCCTCTCTTCGATTC 58.877 45.833 0.00 0.00 0.00 2.52
896 1282 4.156915 CGAGGAACAGTAGTTAGTTCACG 58.843 47.826 7.49 8.15 44.46 4.35
923 1309 0.036199 ACCACCGCGGCAATTAGTTA 60.036 50.000 28.58 0.00 39.03 2.24
938 1324 7.709613 GGCAATTAGTTAGTTAGTTAGCTAGCA 59.290 37.037 18.83 0.00 31.83 3.49
939 1325 8.756864 GCAATTAGTTAGTTAGTTAGCTAGCAG 58.243 37.037 18.83 0.00 31.83 4.24
940 1326 8.756864 CAATTAGTTAGTTAGTTAGCTAGCAGC 58.243 37.037 18.83 6.29 42.84 5.25
957 1343 0.109086 AGCTTGACGAGGTGTGATCG 60.109 55.000 0.00 0.00 45.54 3.69
964 1350 1.657751 CGAGGTGTGATCGAGGCAGA 61.658 60.000 0.00 0.00 42.76 4.26
967 1353 0.741221 GGTGTGATCGAGGCAGAACC 60.741 60.000 0.00 0.00 39.61 3.62
1119 1509 2.347490 GCTGCCTTGTCCGAGGAA 59.653 61.111 4.67 0.00 39.25 3.36
1340 1734 1.522668 TAGTTTCTGCGCAACATGCT 58.477 45.000 13.05 8.87 42.25 3.79
1341 1735 0.239347 AGTTTCTGCGCAACATGCTC 59.761 50.000 13.05 0.00 42.25 4.26
1342 1736 1.061799 GTTTCTGCGCAACATGCTCG 61.062 55.000 13.05 0.00 42.25 5.03
1343 1737 1.227342 TTTCTGCGCAACATGCTCGA 61.227 50.000 13.05 0.00 42.25 4.04
1374 1768 5.276584 CGAGATCGATCAAGCGAAATCTTTT 60.277 40.000 26.47 0.89 44.22 2.27
1377 1771 8.147642 AGATCGATCAAGCGAAATCTTTTATT 57.852 30.769 26.47 0.00 44.22 1.40
1601 1997 0.466124 CTAGGTCAGGTTAGGGCTGC 59.534 60.000 0.00 0.00 0.00 5.25
1602 1998 0.981277 TAGGTCAGGTTAGGGCTGCC 60.981 60.000 11.05 11.05 0.00 4.85
1742 2139 4.649674 TCATAAGCTCTAGGGTTCGTCATT 59.350 41.667 0.00 0.00 36.91 2.57
1767 2164 5.130292 AGAGATTGATTGTGCAAACAAGG 57.870 39.130 11.95 0.00 36.70 3.61
1802 2199 7.332926 TGAACTTTAGCTCATGAACTGATCTTC 59.667 37.037 8.93 5.35 32.68 2.87
1858 2255 2.058595 GGCCAAGGCGGTAGAGAGA 61.059 63.158 4.80 0.00 43.06 3.10
1960 2360 2.492090 GAGATCGTGGTGCTCGCT 59.508 61.111 0.00 0.00 0.00 4.93
1963 2363 1.446099 GATCGTGGTGCTCGCTTCA 60.446 57.895 0.00 0.00 0.00 3.02
1966 2366 3.426568 GTGGTGCTCGCTTCAGGC 61.427 66.667 0.00 0.00 37.64 4.85
2155 2555 4.719369 GACGCCGGAGAACACGCT 62.719 66.667 13.83 0.00 0.00 5.07
2171 2571 1.360194 CGCTGACGACGACTACTCCT 61.360 60.000 0.00 0.00 43.93 3.69
2317 2717 2.481952 GGCGGCTTAATCAATCAGCTAG 59.518 50.000 0.00 0.00 33.76 3.42
2318 2718 3.134458 GCGGCTTAATCAATCAGCTAGT 58.866 45.455 0.00 0.00 33.76 2.57
2319 2719 3.561725 GCGGCTTAATCAATCAGCTAGTT 59.438 43.478 0.00 0.00 33.76 2.24
2320 2720 4.553547 GCGGCTTAATCAATCAGCTAGTTG 60.554 45.833 0.00 0.00 33.76 3.16
2642 3058 3.699538 CCCAGCCCCTAAAATAACAGTTC 59.300 47.826 0.00 0.00 0.00 3.01
2744 3161 6.381801 CATTTCTGTTTACAAGATCCCACAC 58.618 40.000 0.00 0.00 0.00 3.82
2745 3162 4.698201 TCTGTTTACAAGATCCCACACA 57.302 40.909 0.00 0.00 0.00 3.72
2760 3177 4.653341 TCCCACACAAGTCCATTTTTGATT 59.347 37.500 0.00 0.00 0.00 2.57
2769 3186 6.212888 AGTCCATTTTTGATTATGTCAGGC 57.787 37.500 0.00 0.00 38.29 4.85
2829 3250 3.318017 AGACAAGTCTTCGGATCAAACG 58.682 45.455 0.00 0.00 36.31 3.60
2873 3294 0.459585 GCAATGCATGGCAAGTCCTG 60.460 55.000 21.56 2.94 43.62 3.86
3087 3519 2.622962 GCATGCTGCAGTGCACAGA 61.623 57.895 21.04 0.57 46.33 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.739371 GCCGGTTACTTGCTCACTAGG 60.739 57.143 1.90 0.00 0.00 3.02
1 2 1.641577 GCCGGTTACTTGCTCACTAG 58.358 55.000 1.90 0.00 0.00 2.57
2 3 0.248289 GGCCGGTTACTTGCTCACTA 59.752 55.000 1.90 0.00 0.00 2.74
3 4 1.003718 GGCCGGTTACTTGCTCACT 60.004 57.895 1.90 0.00 0.00 3.41
4 5 2.038837 GGGCCGGTTACTTGCTCAC 61.039 63.158 1.90 0.00 0.00 3.51
14 15 1.555477 TATTGAAGGACGGGCCGGTT 61.555 55.000 31.78 20.03 43.43 4.44
22 23 3.575858 CGTCAAGCATATTGAAGGACG 57.424 47.619 0.00 0.00 40.26 4.79
49 50 2.750948 TCAACTTCGTGTAAGCCAGTC 58.249 47.619 0.00 0.00 38.93 3.51
54 55 4.627467 ACTGATCATCAACTTCGTGTAAGC 59.373 41.667 0.00 0.00 38.93 3.09
75 76 3.196207 AATGGCGCACACAGGGACT 62.196 57.895 10.83 0.00 39.39 3.85
76 77 2.672996 AATGGCGCACACAGGGAC 60.673 61.111 10.83 0.00 39.03 4.46
82 83 2.562912 CTGACCAATGGCGCACAC 59.437 61.111 10.83 0.00 0.00 3.82
83 84 2.672651 CCTGACCAATGGCGCACA 60.673 61.111 10.83 5.20 0.00 4.57
84 85 2.268076 AACCTGACCAATGGCGCAC 61.268 57.895 10.83 0.00 0.00 5.34
85 86 2.115052 AACCTGACCAATGGCGCA 59.885 55.556 10.83 0.00 0.00 6.09
86 87 2.268076 ACAACCTGACCAATGGCGC 61.268 57.895 0.00 0.00 0.00 6.53
87 88 1.580942 CACAACCTGACCAATGGCG 59.419 57.895 0.00 0.00 0.00 5.69
88 89 1.535204 CCCACAACCTGACCAATGGC 61.535 60.000 0.00 0.00 0.00 4.40
202 203 9.535878 TTGGTTTACACTGGTTGATTTATTTTC 57.464 29.630 0.00 0.00 0.00 2.29
207 208 8.578151 GGTATTTGGTTTACACTGGTTGATTTA 58.422 33.333 0.00 0.00 0.00 1.40
222 223 8.771521 GGTATTAATACCAGGGTATTTGGTTT 57.228 34.615 31.39 6.94 46.57 3.27
284 285 0.656259 CAGTCGCCAGATCATGCTTG 59.344 55.000 0.00 0.00 0.00 4.01
285 286 0.463295 CCAGTCGCCAGATCATGCTT 60.463 55.000 0.00 0.00 0.00 3.91
298 299 0.878523 TTTCCTTGCGTGACCAGTCG 60.879 55.000 0.00 0.00 0.00 4.18
299 300 1.002792 GTTTTCCTTGCGTGACCAGTC 60.003 52.381 0.00 0.00 0.00 3.51
300 301 1.021968 GTTTTCCTTGCGTGACCAGT 58.978 50.000 0.00 0.00 0.00 4.00
301 302 0.310854 GGTTTTCCTTGCGTGACCAG 59.689 55.000 0.00 0.00 36.94 4.00
302 303 1.104577 GGGTTTTCCTTGCGTGACCA 61.105 55.000 0.00 0.00 40.46 4.02
303 304 1.658114 GGGTTTTCCTTGCGTGACC 59.342 57.895 0.00 0.00 40.46 4.02
304 305 1.281656 CGGGTTTTCCTTGCGTGAC 59.718 57.895 0.00 0.00 40.46 3.67
336 337 6.964464 AGTAGTTCTCTGTCTATGGAGAAGA 58.036 40.000 5.76 0.00 45.43 2.87
337 338 7.416213 CCAAGTAGTTCTCTGTCTATGGAGAAG 60.416 44.444 5.76 0.00 45.43 2.85
349 358 4.962155 AGTGAAACCCAAGTAGTTCTCTG 58.038 43.478 0.00 0.00 37.80 3.35
355 364 5.070685 GGATGAAAGTGAAACCCAAGTAGT 58.929 41.667 0.00 0.00 37.80 2.73
361 370 3.636300 CAGTTGGATGAAAGTGAAACCCA 59.364 43.478 0.00 0.00 37.80 4.51
388 397 3.691498 GTTGTTGCACTACCACTTCAAC 58.309 45.455 0.00 0.00 37.94 3.18
389 398 2.353269 CGTTGTTGCACTACCACTTCAA 59.647 45.455 0.00 0.00 0.00 2.69
390 399 1.937223 CGTTGTTGCACTACCACTTCA 59.063 47.619 0.00 0.00 0.00 3.02
391 400 1.333791 GCGTTGTTGCACTACCACTTC 60.334 52.381 0.00 0.00 34.15 3.01
404 421 1.355210 CTTGTCTTGCCGCGTTGTT 59.645 52.632 4.92 0.00 0.00 2.83
418 435 1.184970 CGGGGGAATGTTTGCCTTGT 61.185 55.000 0.00 0.00 41.52 3.16
466 490 0.801067 GGATCGACCGTTTGACTCCG 60.801 60.000 0.00 0.00 0.00 4.63
484 508 3.911698 TGATGGCGATCCGTCCGG 61.912 66.667 6.23 0.00 45.81 5.14
485 509 2.658593 GTGATGGCGATCCGTCCG 60.659 66.667 6.23 0.00 45.81 4.79
486 510 2.280186 GGTGATGGCGATCCGTCC 60.280 66.667 6.23 3.02 45.81 4.79
690 738 1.004440 GTGAGGTGAGTGAGTGGCC 60.004 63.158 0.00 0.00 0.00 5.36
709 762 0.747283 TTAGAGAGAGACGGGGCGAC 60.747 60.000 0.00 0.00 0.00 5.19
772 1139 1.076632 GGCTTCGAGGAGAGAGGGA 60.077 63.158 0.00 0.00 0.00 4.20
773 1140 2.131067 GGGCTTCGAGGAGAGAGGG 61.131 68.421 0.00 0.00 0.00 4.30
774 1141 2.131067 GGGGCTTCGAGGAGAGAGG 61.131 68.421 0.00 0.00 0.00 3.69
775 1142 2.485795 CGGGGCTTCGAGGAGAGAG 61.486 68.421 0.00 0.00 0.00 3.20
862 1248 0.108138 GTTCCTCGGACATGGACTGG 60.108 60.000 0.00 0.00 31.24 4.00
938 1324 0.109086 CGATCACACCTCGTCAAGCT 60.109 55.000 0.00 0.00 0.00 3.74
939 1325 0.109272 TCGATCACACCTCGTCAAGC 60.109 55.000 0.00 0.00 37.40 4.01
940 1326 1.468224 CCTCGATCACACCTCGTCAAG 60.468 57.143 0.00 0.00 37.40 3.02
941 1327 0.526211 CCTCGATCACACCTCGTCAA 59.474 55.000 0.00 0.00 37.40 3.18
957 1343 3.672295 CTCGCCCAGGTTCTGCCTC 62.672 68.421 0.00 0.00 46.96 4.70
964 1350 0.614979 TAGAGCTTCTCGCCCAGGTT 60.615 55.000 0.00 0.00 40.39 3.50
967 1353 1.040339 ACCTAGAGCTTCTCGCCCAG 61.040 60.000 0.00 0.00 40.39 4.45
968 1354 0.257905 TACCTAGAGCTTCTCGCCCA 59.742 55.000 0.00 0.00 40.39 5.36
969 1355 0.955905 CTACCTAGAGCTTCTCGCCC 59.044 60.000 0.00 0.00 40.39 6.13
971 1357 3.857638 GCTACCTAGAGCTTCTCGC 57.142 57.895 0.00 0.00 39.50 5.03
985 1375 2.590007 CATGCCCGCCAGAGCTAC 60.590 66.667 0.00 0.00 36.60 3.58
1263 1653 4.155709 TGTGTAATGAAATTGCCTTGGGA 58.844 39.130 0.00 0.00 38.22 4.37
1374 1768 4.922206 ACAGGCAATCCAGTTCTTCAATA 58.078 39.130 0.00 0.00 33.74 1.90
1377 1771 2.106338 TGACAGGCAATCCAGTTCTTCA 59.894 45.455 0.00 0.00 31.66 3.02
1601 1997 1.078848 CAAGCCAAGAGACGAGGGG 60.079 63.158 0.00 0.00 0.00 4.79
1602 1998 0.035458 AACAAGCCAAGAGACGAGGG 59.965 55.000 0.00 0.00 0.00 4.30
1685 2082 6.899892 ATGAAAAAGGGTAGAGAGGAGAAT 57.100 37.500 0.00 0.00 0.00 2.40
1742 2139 5.771153 TGTTTGCACAATCAATCTCTCAA 57.229 34.783 0.00 0.00 0.00 3.02
1767 2164 7.810658 TCATGAGCTAAAGTTCATCAAGAAAC 58.189 34.615 6.37 0.00 42.77 2.78
1802 2199 8.757164 TTGTCTATCTGTAAACACACATGTAG 57.243 34.615 0.00 0.00 38.45 2.74
1858 2255 3.602513 CTGCTTCAGCTCCCGCACT 62.603 63.158 0.00 0.00 42.66 4.40
1990 2390 2.203788 AGGGAGGCCTCGAACACA 60.204 61.111 26.36 0.00 0.00 3.72
2148 2548 0.385223 GTAGTCGTCGTCAGCGTGTT 60.385 55.000 0.00 0.00 39.49 3.32
2155 2555 2.277969 GATGAGGAGTAGTCGTCGTCA 58.722 52.381 26.62 12.79 46.33 4.35
2212 2612 3.965026 CTCCACGAGGGCCCTCAGA 62.965 68.421 43.40 34.26 42.86 3.27
2299 2699 4.261363 GCCAACTAGCTGATTGATTAAGCC 60.261 45.833 12.12 0.00 37.68 4.35
2307 2707 1.718757 GCCGGCCAACTAGCTGATTG 61.719 60.000 18.11 0.00 42.00 2.67
2549 2965 9.689501 CCCTAATGGTAAATTAAAAGAGTGGTA 57.310 33.333 0.00 0.00 0.00 3.25
2550 2966 8.589701 CCCTAATGGTAAATTAAAAGAGTGGT 57.410 34.615 0.00 0.00 0.00 4.16
2560 2976 7.363443 GCTCAAGCAAACCCTAATGGTAAATTA 60.363 37.037 0.00 0.00 43.93 1.40
2561 2977 6.574269 GCTCAAGCAAACCCTAATGGTAAATT 60.574 38.462 0.00 0.00 43.93 1.82
2562 2978 5.105351 GCTCAAGCAAACCCTAATGGTAAAT 60.105 40.000 0.00 0.00 43.93 1.40
2744 3161 6.532657 GCCTGACATAATCAAAAATGGACTTG 59.467 38.462 0.00 0.00 36.69 3.16
2745 3162 6.351286 GGCCTGACATAATCAAAAATGGACTT 60.351 38.462 0.00 0.00 36.69 3.01
2760 3177 1.071228 CTAGCTGCATGGCCTGACATA 59.929 52.381 3.32 0.00 0.00 2.29
2829 3250 5.883328 CATGTATGCATGCAAACATCTTC 57.117 39.130 26.68 5.41 44.87 2.87
3087 3519 1.210478 CCACACTGGCTAGCCATACTT 59.790 52.381 35.93 17.95 46.15 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.