Multiple sequence alignment - TraesCS5B01G465300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G465300 chr5B 100.000 3239 0 0 1 3239 639738075 639741313 0.000000e+00 5982.0
1 TraesCS5B01G465300 chr5D 88.297 2102 148 52 411 2455 509232063 509234123 0.000000e+00 2429.0
2 TraesCS5B01G465300 chr5D 91.816 391 28 2 1 387 509231689 509232079 2.840000e-150 542.0
3 TraesCS5B01G465300 chr5D 94.624 93 4 1 2481 2573 509234176 509234267 3.370000e-30 143.0
4 TraesCS5B01G465300 chr5D 91.429 70 6 0 2579 2648 509234301 509234370 2.660000e-16 97.1
5 TraesCS5B01G465300 chr5A 84.980 1984 138 72 416 2340 636428671 636430553 0.000000e+00 1866.0
6 TraesCS5B01G465300 chr5A 91.282 390 31 1 1 387 129232182 129231793 2.210000e-146 529.0
7 TraesCS5B01G465300 chr5A 90.979 388 31 4 1 387 636428298 636428682 1.330000e-143 520.0
8 TraesCS5B01G465300 chr5A 82.507 343 33 12 2725 3040 636431064 636431406 3.180000e-70 276.0
9 TraesCS5B01G465300 chr5A 85.167 209 18 7 580 776 129231376 129231169 5.480000e-48 202.0
10 TraesCS5B01G465300 chr5A 92.000 75 6 0 2570 2644 636430875 636430949 4.420000e-19 106.0
11 TraesCS5B01G465300 chr5A 86.170 94 11 2 2481 2573 636430732 636430824 2.060000e-17 100.0
12 TraesCS5B01G465300 chr2D 91.538 390 30 1 1 387 287143910 287144299 4.760000e-148 534.0
13 TraesCS5B01G465300 chr2D 84.416 385 34 15 411 776 287144283 287144660 3.970000e-94 355.0
14 TraesCS5B01G465300 chr2D 90.000 170 16 1 2171 2340 286693191 286693359 5.440000e-53 219.0
15 TraesCS5B01G465300 chr2D 86.517 178 9 9 2017 2182 286684635 286684809 7.140000e-42 182.0
16 TraesCS5B01G465300 chr1A 90.769 390 33 1 1 387 505307313 505307702 4.790000e-143 518.0
17 TraesCS5B01G465300 chr1A 84.197 386 36 13 411 776 505307686 505308066 5.140000e-93 351.0
18 TraesCS5B01G465300 chr3D 89.822 393 33 4 1 387 470482648 470483039 6.240000e-137 497.0
19 TraesCS5B01G465300 chr3D 84.675 385 35 13 411 776 470483023 470483402 2.380000e-96 363.0
20 TraesCS5B01G465300 chr2B 100.000 28 0 0 3102 3129 119626339 119626312 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G465300 chr5B 639738075 639741313 3238 False 5982.000 5982 100.0000 1 3239 1 chr5B.!!$F1 3238
1 TraesCS5B01G465300 chr5D 509231689 509234370 2681 False 802.775 2429 91.5415 1 2648 4 chr5D.!!$F1 2647
2 TraesCS5B01G465300 chr5A 636428298 636431406 3108 False 573.600 1866 87.3272 1 3040 5 chr5A.!!$F1 3039
3 TraesCS5B01G465300 chr5A 129231169 129232182 1013 True 365.500 529 88.2245 1 776 2 chr5A.!!$R1 775
4 TraesCS5B01G465300 chr2D 287143910 287144660 750 False 444.500 534 87.9770 1 776 2 chr2D.!!$F3 775
5 TraesCS5B01G465300 chr1A 505307313 505308066 753 False 434.500 518 87.4830 1 776 2 chr1A.!!$F1 775
6 TraesCS5B01G465300 chr3D 470482648 470483402 754 False 430.000 497 87.2485 1 776 2 chr3D.!!$F1 775

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
845 1168 0.037877 AGCATCCTCAGCTGCTGTTT 59.962 50.0 27.24 9.56 46.55 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2828 3429 0.036765 TTCCCATCGTCCTTTGTCGG 60.037 55.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 1.204704 CAGTTACCCATCGCTGTCTCA 59.795 52.381 0.00 0.00 0.00 3.27
175 178 6.975772 GTGTGTGTCTCTATCCATCTTTACTC 59.024 42.308 0.00 0.00 0.00 2.59
178 181 5.598830 GTGTCTCTATCCATCTTTACTCCCA 59.401 44.000 0.00 0.00 0.00 4.37
200 203 5.643777 CCAGTTGATTCCGTTTATCAGTTCT 59.356 40.000 0.00 0.00 33.83 3.01
201 204 6.402550 CCAGTTGATTCCGTTTATCAGTTCTG 60.403 42.308 0.00 0.00 33.83 3.02
266 270 7.652300 TTATGTTACTTAGTGTGCAGTTCTG 57.348 36.000 0.00 0.00 0.00 3.02
288 293 7.530010 TCTGTCTGAAAGCATGCTTTTTATAC 58.470 34.615 38.45 31.01 45.16 1.47
311 319 5.214417 CGCAACTTGATTTTGAAGATGACA 58.786 37.500 0.00 0.00 0.00 3.58
357 365 2.953648 GGTGGCATTGACATCATGATCA 59.046 45.455 4.86 0.00 0.00 2.92
362 370 5.538433 TGGCATTGACATCATGATCATTGAT 59.462 36.000 18.67 12.67 31.02 2.57
365 373 7.094334 GGCATTGACATCATGATCATTGATAGT 60.094 37.037 18.67 14.24 31.02 2.12
378 386 9.421399 TGATCATTGATAGTAACTAAGAGGACA 57.579 33.333 0.00 0.00 0.00 4.02
438 446 6.039047 AGGACATATTTGATTACAGCTTGCTG 59.961 38.462 19.62 19.62 0.00 4.41
453 461 3.246699 GCTTGCTGTGTCGTACAAGTAAA 59.753 43.478 0.00 0.00 41.22 2.01
491 506 1.680555 CGCTGGTGCTTGGGGTTATTA 60.681 52.381 0.00 0.00 36.97 0.98
543 558 0.793861 TTTGACTGCGCCGACATTAC 59.206 50.000 4.18 0.00 0.00 1.89
552 567 2.033151 GCGCCGACATTACATCCTAAAC 60.033 50.000 0.00 0.00 0.00 2.01
605 882 4.752101 CCCCGTATGAATCACTTTCTCATC 59.248 45.833 0.00 0.00 35.23 2.92
713 999 4.204028 CCCCATTGGTAGGCCCGG 62.204 72.222 0.00 0.00 35.15 5.73
718 1004 0.179045 CATTGGTAGGCCCGGAAGAG 60.179 60.000 0.73 0.00 35.15 2.85
744 1030 2.146342 TCAGCTTTGTCACTTAGCAGC 58.854 47.619 4.81 0.00 37.37 5.25
752 1038 1.198637 GTCACTTAGCAGCAAGGCAAG 59.801 52.381 0.00 0.00 35.83 4.01
780 1099 5.939883 CACACACAGGATCTCCTTAAATTGA 59.060 40.000 0.00 0.00 46.09 2.57
806 1125 2.357050 CCATCTCCCTTGGTGCAACATA 60.357 50.000 4.62 0.00 39.98 2.29
808 1127 3.737559 TCTCCCTTGGTGCAACATATT 57.262 42.857 4.62 0.00 39.98 1.28
809 1128 3.355378 TCTCCCTTGGTGCAACATATTG 58.645 45.455 4.62 0.00 39.98 1.90
811 1130 3.505386 TCCCTTGGTGCAACATATTGTT 58.495 40.909 4.62 0.00 42.08 2.83
812 1131 3.509575 TCCCTTGGTGCAACATATTGTTC 59.490 43.478 4.62 0.00 38.77 3.18
813 1132 3.368323 CCCTTGGTGCAACATATTGTTCC 60.368 47.826 4.62 0.00 38.77 3.62
814 1133 3.368323 CCTTGGTGCAACATATTGTTCCC 60.368 47.826 4.62 0.00 38.77 3.97
818 1137 3.367292 GGTGCAACATATTGTTCCCACTG 60.367 47.826 0.00 0.00 38.77 3.66
832 1155 1.153086 CACTGCCCCACTAGCATCC 60.153 63.158 0.00 0.00 40.04 3.51
845 1168 0.037877 AGCATCCTCAGCTGCTGTTT 59.962 50.000 27.24 9.56 46.55 2.83
953 1276 1.081641 CTGCAAGCAGGTTTGAGCG 60.082 57.895 14.10 0.00 40.17 5.03
979 1302 3.257127 AGCTATAAGAACTCCCTGATCGC 59.743 47.826 0.00 0.00 0.00 4.58
1121 1457 2.050144 TGGTAAGGATCAGGATCAGCC 58.950 52.381 11.12 7.41 39.54 4.85
1168 1504 1.074775 GACATGGGCCACTTCACCA 59.925 57.895 9.28 0.00 38.88 4.17
1194 1530 1.407437 CCTGCATCTCACCCTTGTACC 60.407 57.143 0.00 0.00 0.00 3.34
1195 1531 1.556911 CTGCATCTCACCCTTGTACCT 59.443 52.381 0.00 0.00 0.00 3.08
1196 1532 2.766263 CTGCATCTCACCCTTGTACCTA 59.234 50.000 0.00 0.00 0.00 3.08
1232 1568 2.485659 AGATGAAGAAGAGGCCATGGA 58.514 47.619 18.40 0.00 0.00 3.41
1234 1570 2.795231 TGAAGAAGAGGCCATGGAAG 57.205 50.000 18.40 0.00 0.00 3.46
1237 1573 0.034670 AGAAGAGGCCATGGAAGCAC 60.035 55.000 18.40 0.00 0.00 4.40
1239 1575 2.825836 GAGGCCATGGAAGCACCG 60.826 66.667 18.40 0.00 42.61 4.94
1255 1591 2.265739 CGGTGCAAGCTGCCTCTA 59.734 61.111 0.00 0.00 44.23 2.43
1281 1617 1.129251 CAGCAGCATGACGTCGAATTT 59.871 47.619 11.62 0.00 39.69 1.82
1347 1683 1.029681 CGATGATGGTGACCGAGGTA 58.970 55.000 0.00 0.00 0.00 3.08
1348 1684 1.269102 CGATGATGGTGACCGAGGTAC 60.269 57.143 0.00 0.00 0.00 3.34
1382 1718 2.102925 CAGAAGAGGAGGAAGAGATGGC 59.897 54.545 0.00 0.00 0.00 4.40
1387 1723 0.537188 GGAGGAAGAGATGGCGAACA 59.463 55.000 0.00 0.00 0.00 3.18
1416 1752 0.539051 CCGAAGAGGAAGCTGGTGAT 59.461 55.000 0.00 0.00 45.00 3.06
1669 2005 2.398754 TCAGAAGTCCCAGTTCCAGA 57.601 50.000 0.00 0.00 0.00 3.86
1673 2009 3.515502 CAGAAGTCCCAGTTCCAGATGTA 59.484 47.826 0.00 0.00 0.00 2.29
1693 2029 0.863799 CGCCGATGATGAGGTTGATG 59.136 55.000 0.00 0.00 0.00 3.07
1695 2031 2.775890 GCCGATGATGAGGTTGATGAT 58.224 47.619 0.00 0.00 0.00 2.45
1700 2036 5.178996 CCGATGATGAGGTTGATGATTCTTC 59.821 44.000 0.00 0.00 0.00 2.87
1705 2041 4.592942 TGAGGTTGATGATTCTTCCCTTG 58.407 43.478 0.00 0.00 0.00 3.61
1723 2059 7.831691 TCCCTTGTGTTCTTGAATTAATTCA 57.168 32.000 23.86 23.86 44.42 2.57
1749 2095 5.048713 CACTTTAATCTTGTCACTGTTCCCC 60.049 44.000 0.00 0.00 0.00 4.81
1756 2102 2.253610 TGTCACTGTTCCCCTAACGAT 58.746 47.619 0.00 0.00 41.30 3.73
1769 2115 5.542635 TCCCCTAACGATATGCTCTAACAAT 59.457 40.000 0.00 0.00 0.00 2.71
1770 2116 5.869888 CCCCTAACGATATGCTCTAACAATC 59.130 44.000 0.00 0.00 0.00 2.67
1771 2117 6.455647 CCCTAACGATATGCTCTAACAATCA 58.544 40.000 0.00 0.00 0.00 2.57
1772 2118 6.366332 CCCTAACGATATGCTCTAACAATCAC 59.634 42.308 0.00 0.00 0.00 3.06
1781 2127 5.601662 TGCTCTAACAATCACATAGCCTAC 58.398 41.667 0.00 0.00 0.00 3.18
1788 2137 9.601217 CTAACAATCACATAGCCTACTTAAACT 57.399 33.333 0.00 0.00 0.00 2.66
1795 2144 9.515226 TCACATAGCCTACTTAAACTTCATTTT 57.485 29.630 0.00 0.00 0.00 1.82
1858 2213 4.572985 TTGATGAGTTCAGCAACTTTGG 57.427 40.909 8.59 0.00 45.85 3.28
1859 2214 2.886523 TGATGAGTTCAGCAACTTTGGG 59.113 45.455 0.00 0.00 43.37 4.12
1867 2242 4.299586 TCAGCAACTTTGGGTCATCATA 57.700 40.909 0.00 0.00 0.00 2.15
1868 2243 4.858850 TCAGCAACTTTGGGTCATCATAT 58.141 39.130 0.00 0.00 0.00 1.78
1869 2244 4.883585 TCAGCAACTTTGGGTCATCATATC 59.116 41.667 0.00 0.00 0.00 1.63
1872 2247 4.402155 GCAACTTTGGGTCATCATATCCAA 59.598 41.667 0.00 0.00 37.48 3.53
1873 2248 5.069516 GCAACTTTGGGTCATCATATCCAAT 59.930 40.000 0.00 0.00 38.81 3.16
1874 2249 6.407299 GCAACTTTGGGTCATCATATCCAATT 60.407 38.462 0.00 0.00 38.81 2.32
1875 2250 6.720112 ACTTTGGGTCATCATATCCAATTG 57.280 37.500 0.00 0.00 38.81 2.32
1876 2251 5.599656 ACTTTGGGTCATCATATCCAATTGG 59.400 40.000 19.08 19.08 38.81 3.16
1914 2289 9.827411 ATCGTGCTTCTTTTTAAAGATTAGAAC 57.173 29.630 5.81 5.63 43.92 3.01
1931 2306 8.751242 AGATTAGAACCTTCTTTCTAGTACACC 58.249 37.037 0.00 0.00 38.90 4.16
1932 2307 7.844493 TTAGAACCTTCTTTCTAGTACACCA 57.156 36.000 0.00 0.00 38.90 4.17
1960 2335 4.725790 ATTTTATCAGGCCAAAGCACTC 57.274 40.909 5.01 0.00 42.56 3.51
1973 2348 1.698506 AGCACTCGAGAATAGGGAGG 58.301 55.000 21.68 0.00 32.11 4.30
1994 2369 3.574074 ATGGCCCACTGCACCTGAC 62.574 63.158 0.00 0.00 43.89 3.51
2040 2415 6.999871 TGAAGCATGGAATCTTGCAATAGATA 59.000 34.615 0.00 0.00 43.82 1.98
2041 2416 7.174426 TGAAGCATGGAATCTTGCAATAGATAG 59.826 37.037 0.00 0.00 43.82 2.08
2042 2417 6.540995 AGCATGGAATCTTGCAATAGATAGT 58.459 36.000 0.00 0.00 43.82 2.12
2043 2418 6.430308 AGCATGGAATCTTGCAATAGATAGTG 59.570 38.462 0.00 0.00 43.82 2.74
2112 2489 1.673920 TGTTTCCTGACGGTTTTGCTC 59.326 47.619 0.00 0.00 0.00 4.26
2114 2491 1.503818 TTCCTGACGGTTTTGCTCGC 61.504 55.000 0.00 0.00 0.00 5.03
2228 2617 2.813908 GTTCGGCGGCCACTACAG 60.814 66.667 20.71 0.92 0.00 2.74
2235 2624 2.436115 GGCCACTACAGCGGGTTC 60.436 66.667 0.00 0.00 0.00 3.62
2261 2653 3.430098 CGTGCCAGAAGCTTCTAGAATCT 60.430 47.826 28.02 4.09 44.23 2.40
2387 2827 8.860088 TGTATATATGCTTGTCTGTCATGTACT 58.140 33.333 2.37 0.00 0.00 2.73
2388 2828 9.347934 GTATATATGCTTGTCTGTCATGTACTC 57.652 37.037 0.00 0.00 0.00 2.59
2389 2829 3.319137 TGCTTGTCTGTCATGTACTCC 57.681 47.619 0.00 0.00 0.00 3.85
2390 2830 2.263077 GCTTGTCTGTCATGTACTCCG 58.737 52.381 0.00 0.00 0.00 4.63
2391 2831 2.352814 GCTTGTCTGTCATGTACTCCGT 60.353 50.000 0.00 0.00 0.00 4.69
2405 2845 1.407979 ACTCCGTATTTCCTACCAGCG 59.592 52.381 0.00 0.00 0.00 5.18
2417 2857 2.408050 CTACCAGCGGATGTGAATAGC 58.592 52.381 1.50 0.00 0.00 2.97
2425 2865 6.082338 CAGCGGATGTGAATAGCATTATTTC 58.918 40.000 0.00 0.00 29.67 2.17
2431 2871 6.130298 TGTGAATAGCATTATTTCGGGTTG 57.870 37.500 0.00 0.00 29.67 3.77
2432 2872 5.883115 TGTGAATAGCATTATTTCGGGTTGA 59.117 36.000 0.00 0.00 29.67 3.18
2434 2874 7.068103 TGTGAATAGCATTATTTCGGGTTGAAT 59.932 33.333 0.00 0.00 36.22 2.57
2456 2896 4.832590 TTTTTCCCGCGAAATTACTTCA 57.167 36.364 8.23 0.00 37.81 3.02
2457 2897 5.379732 TTTTTCCCGCGAAATTACTTCAT 57.620 34.783 8.23 0.00 37.81 2.57
2459 2899 2.557317 TCCCGCGAAATTACTTCATCC 58.443 47.619 8.23 0.00 33.17 3.51
2460 2900 2.093394 TCCCGCGAAATTACTTCATCCA 60.093 45.455 8.23 0.00 33.17 3.41
2462 2902 2.936498 CCGCGAAATTACTTCATCCACT 59.064 45.455 8.23 0.00 33.17 4.00
2463 2903 4.116961 CCGCGAAATTACTTCATCCACTA 58.883 43.478 8.23 0.00 33.17 2.74
2464 2904 4.209288 CCGCGAAATTACTTCATCCACTAG 59.791 45.833 8.23 0.00 33.17 2.57
2465 2905 4.209288 CGCGAAATTACTTCATCCACTAGG 59.791 45.833 0.00 0.00 33.17 3.02
2475 2915 3.423344 TCCACTAGGAGATCCGCTC 57.577 57.895 0.00 0.00 39.61 5.03
2497 2964 3.002042 CCGATTGCTCTGTAGAAATGCAG 59.998 47.826 0.00 0.00 30.42 4.41
2577 3099 2.031465 ACGCGGTAACCACTTGGG 59.969 61.111 12.47 0.00 44.81 4.12
2607 3129 0.762418 TGTGTCCGTTGGGTGAATCT 59.238 50.000 0.00 0.00 33.83 2.40
2664 3247 1.540363 CCACCGTGGGTATATGCAGTC 60.540 57.143 9.99 0.00 32.11 3.51
2666 3249 0.319555 CCGTGGGTATATGCAGTCGG 60.320 60.000 0.00 5.72 0.00 4.79
2667 3250 0.387929 CGTGGGTATATGCAGTCGGT 59.612 55.000 0.00 0.00 0.00 4.69
2674 3257 0.755698 ATATGCAGTCGGTCGGAGGT 60.756 55.000 0.00 0.00 0.00 3.85
2675 3258 1.381928 TATGCAGTCGGTCGGAGGTC 61.382 60.000 0.00 0.00 0.00 3.85
2676 3259 4.131088 GCAGTCGGTCGGAGGTCC 62.131 72.222 0.00 0.00 0.00 4.46
2677 3260 2.675423 CAGTCGGTCGGAGGTCCA 60.675 66.667 0.00 0.00 35.14 4.02
2678 3261 2.052690 CAGTCGGTCGGAGGTCCAT 61.053 63.158 0.00 0.00 35.14 3.41
2679 3262 1.753463 AGTCGGTCGGAGGTCCATC 60.753 63.158 0.00 0.00 35.14 3.51
2680 3263 1.753463 GTCGGTCGGAGGTCCATCT 60.753 63.158 0.00 0.00 35.14 2.90
2690 3273 2.582498 GTCCATCTTCCCGTCGCG 60.582 66.667 0.00 0.00 0.00 5.87
2723 3306 3.414700 CGTGCTGTTCGCTGGACC 61.415 66.667 0.00 0.00 40.11 4.46
2729 3312 3.255379 GTTCGCTGGACCGATCGC 61.255 66.667 10.32 0.00 37.06 4.58
2760 3343 2.030412 TCGCTGCGTGTGAATGGT 59.970 55.556 22.48 0.00 31.45 3.55
2762 3345 2.562912 GCTGCGTGTGAATGGTGG 59.437 61.111 0.00 0.00 0.00 4.61
2767 3350 1.066303 TGCGTGTGAATGGTGGTTTTC 59.934 47.619 0.00 0.00 0.00 2.29
2770 3353 2.287547 CGTGTGAATGGTGGTTTTCCTG 60.288 50.000 0.00 0.00 41.38 3.86
2776 3359 0.555769 TGGTGGTTTTCCTGCCTCTT 59.444 50.000 0.00 0.00 41.38 2.85
2779 3362 1.613925 GTGGTTTTCCTGCCTCTTTCC 59.386 52.381 0.00 0.00 41.38 3.13
2789 3372 2.686915 CTGCCTCTTTCCCATGATCAAC 59.313 50.000 0.00 0.00 0.00 3.18
2790 3373 1.672881 GCCTCTTTCCCATGATCAACG 59.327 52.381 0.00 0.00 0.00 4.10
2795 3378 4.141287 TCTTTCCCATGATCAACGTTGTT 58.859 39.130 26.47 19.29 0.00 2.83
2796 3379 4.582656 TCTTTCCCATGATCAACGTTGTTT 59.417 37.500 26.47 15.98 0.00 2.83
2824 3407 0.447011 ACGTCGAGATTCAGTCGTCC 59.553 55.000 0.00 0.00 38.60 4.79
2828 3429 2.202623 AGATTCAGTCGTCCGCGC 60.203 61.111 0.00 0.00 38.14 6.86
2855 3456 2.683933 ACGATGGGAAGAGGCCGT 60.684 61.111 0.00 0.00 0.00 5.68
2888 3490 1.079612 TGCTCTGTGACAGCGATGG 60.080 57.895 7.93 0.00 40.01 3.51
2893 3495 1.004595 CTGTGACAGCGATGGACATG 58.995 55.000 5.32 0.00 0.00 3.21
2955 3557 4.397032 GTCCAGGGAAGAATCCAGGAAGA 61.397 52.174 9.11 0.00 46.71 2.87
2960 3562 2.545731 GAAGAATCCAGGAAGACGAGC 58.454 52.381 0.00 0.00 0.00 5.03
2971 3573 2.545952 GGAAGACGAGCTTGAGTGACAA 60.546 50.000 8.31 0.00 36.83 3.18
3032 3642 0.247736 GACGGTCTGATTGGCACTCT 59.752 55.000 6.40 0.00 0.00 3.24
3042 3652 3.791586 GGCACTCTCTGGCCCTCC 61.792 72.222 0.00 0.00 44.53 4.30
3043 3653 3.791586 GCACTCTCTGGCCCTCCC 61.792 72.222 0.00 0.00 0.00 4.30
3044 3654 3.465403 CACTCTCTGGCCCTCCCG 61.465 72.222 0.00 0.00 35.87 5.14
3045 3655 3.999285 ACTCTCTGGCCCTCCCGT 61.999 66.667 0.00 0.00 35.87 5.28
3046 3656 2.685380 CTCTCTGGCCCTCCCGTT 60.685 66.667 0.00 0.00 35.87 4.44
3047 3657 2.683933 TCTCTGGCCCTCCCGTTC 60.684 66.667 0.00 0.00 35.87 3.95
3048 3658 2.685380 CTCTGGCCCTCCCGTTCT 60.685 66.667 0.00 0.00 35.87 3.01
3049 3659 2.203938 TCTGGCCCTCCCGTTCTT 60.204 61.111 0.00 0.00 35.87 2.52
3050 3660 2.245438 CTCTGGCCCTCCCGTTCTTC 62.245 65.000 0.00 0.00 35.87 2.87
3051 3661 2.528127 TGGCCCTCCCGTTCTTCA 60.528 61.111 0.00 0.00 35.87 3.02
3052 3662 1.915078 CTGGCCCTCCCGTTCTTCAT 61.915 60.000 0.00 0.00 35.87 2.57
3053 3663 0.619255 TGGCCCTCCCGTTCTTCATA 60.619 55.000 0.00 0.00 35.87 2.15
3054 3664 0.765510 GGCCCTCCCGTTCTTCATAT 59.234 55.000 0.00 0.00 0.00 1.78
3055 3665 1.143073 GGCCCTCCCGTTCTTCATATT 59.857 52.381 0.00 0.00 0.00 1.28
3056 3666 2.222027 GCCCTCCCGTTCTTCATATTG 58.778 52.381 0.00 0.00 0.00 1.90
3057 3667 2.851195 CCCTCCCGTTCTTCATATTGG 58.149 52.381 0.00 0.00 0.00 3.16
3058 3668 2.487265 CCCTCCCGTTCTTCATATTGGG 60.487 54.545 0.00 0.00 38.02 4.12
3059 3669 2.222027 CTCCCGTTCTTCATATTGGGC 58.778 52.381 0.00 0.00 36.56 5.36
3060 3670 1.133915 TCCCGTTCTTCATATTGGGCC 60.134 52.381 0.00 0.00 36.56 5.80
3061 3671 0.944386 CCGTTCTTCATATTGGGCCG 59.056 55.000 0.00 0.00 0.00 6.13
3062 3672 0.307760 CGTTCTTCATATTGGGCCGC 59.692 55.000 0.00 0.00 0.00 6.53
3063 3673 1.388547 GTTCTTCATATTGGGCCGCA 58.611 50.000 0.00 0.00 0.00 5.69
3064 3674 1.956477 GTTCTTCATATTGGGCCGCAT 59.044 47.619 0.00 0.00 0.00 4.73
3065 3675 3.146066 GTTCTTCATATTGGGCCGCATA 58.854 45.455 0.00 0.00 0.00 3.14
3066 3676 3.057969 TCTTCATATTGGGCCGCATAG 57.942 47.619 0.00 0.00 0.00 2.23
3067 3677 2.371841 TCTTCATATTGGGCCGCATAGT 59.628 45.455 0.00 0.00 0.00 2.12
3068 3678 3.580895 TCTTCATATTGGGCCGCATAGTA 59.419 43.478 0.00 0.00 0.00 1.82
3069 3679 3.610040 TCATATTGGGCCGCATAGTAG 57.390 47.619 0.00 0.00 0.00 2.57
3070 3680 2.236146 TCATATTGGGCCGCATAGTAGG 59.764 50.000 0.00 0.00 0.00 3.18
3076 3686 4.655527 CCGCATAGTAGGCTTCCG 57.344 61.111 5.13 0.00 0.00 4.30
3077 3687 1.664965 CCGCATAGTAGGCTTCCGC 60.665 63.158 5.13 0.00 0.00 5.54
3088 3698 3.691342 CTTCCGCCGACTCACCCA 61.691 66.667 0.00 0.00 0.00 4.51
3089 3699 3.000819 TTCCGCCGACTCACCCAT 61.001 61.111 0.00 0.00 0.00 4.00
3090 3700 2.521958 CTTCCGCCGACTCACCCATT 62.522 60.000 0.00 0.00 0.00 3.16
3091 3701 2.511600 CCGCCGACTCACCCATTC 60.512 66.667 0.00 0.00 0.00 2.67
3092 3702 2.511600 CGCCGACTCACCCATTCC 60.512 66.667 0.00 0.00 0.00 3.01
3093 3703 2.990479 GCCGACTCACCCATTCCT 59.010 61.111 0.00 0.00 0.00 3.36
3094 3704 1.153349 GCCGACTCACCCATTCCTC 60.153 63.158 0.00 0.00 0.00 3.71
3095 3705 1.522569 CCGACTCACCCATTCCTCC 59.477 63.158 0.00 0.00 0.00 4.30
3096 3706 0.978146 CCGACTCACCCATTCCTCCT 60.978 60.000 0.00 0.00 0.00 3.69
3097 3707 0.461961 CGACTCACCCATTCCTCCTC 59.538 60.000 0.00 0.00 0.00 3.71
3098 3708 1.573108 GACTCACCCATTCCTCCTCA 58.427 55.000 0.00 0.00 0.00 3.86
3099 3709 1.484240 GACTCACCCATTCCTCCTCAG 59.516 57.143 0.00 0.00 0.00 3.35
3100 3710 1.079490 ACTCACCCATTCCTCCTCAGA 59.921 52.381 0.00 0.00 0.00 3.27
3101 3711 1.761784 CTCACCCATTCCTCCTCAGAG 59.238 57.143 0.00 0.00 40.09 3.35
3102 3712 0.179936 CACCCATTCCTCCTCAGAGC 59.820 60.000 0.00 0.00 38.96 4.09
3103 3713 0.043940 ACCCATTCCTCCTCAGAGCT 59.956 55.000 0.00 0.00 38.96 4.09
3104 3714 1.292242 ACCCATTCCTCCTCAGAGCTA 59.708 52.381 0.00 0.00 38.96 3.32
3105 3715 2.090267 ACCCATTCCTCCTCAGAGCTAT 60.090 50.000 0.00 0.00 38.96 2.97
3106 3716 3.142977 ACCCATTCCTCCTCAGAGCTATA 59.857 47.826 0.00 0.00 38.96 1.31
3107 3717 4.202879 ACCCATTCCTCCTCAGAGCTATAT 60.203 45.833 0.00 0.00 38.96 0.86
3108 3718 4.405358 CCCATTCCTCCTCAGAGCTATATC 59.595 50.000 0.00 0.00 38.96 1.63
3109 3719 5.271598 CCATTCCTCCTCAGAGCTATATCT 58.728 45.833 0.00 0.00 38.96 1.98
3110 3720 5.360714 CCATTCCTCCTCAGAGCTATATCTC 59.639 48.000 0.00 0.00 38.96 2.75
3111 3721 4.214986 TCCTCCTCAGAGCTATATCTCG 57.785 50.000 0.00 0.00 38.96 4.04
3112 3722 2.682856 CCTCCTCAGAGCTATATCTCGC 59.317 54.545 0.00 0.00 38.96 5.03
3113 3723 2.682856 CTCCTCAGAGCTATATCTCGCC 59.317 54.545 0.00 0.00 38.12 5.54
3114 3724 1.748493 CCTCAGAGCTATATCTCGCCC 59.252 57.143 0.00 0.00 38.12 6.13
3115 3725 1.400142 CTCAGAGCTATATCTCGCCCG 59.600 57.143 0.00 0.00 38.12 6.13
3116 3726 1.169577 CAGAGCTATATCTCGCCCGT 58.830 55.000 0.00 0.00 38.12 5.28
3117 3727 2.027469 TCAGAGCTATATCTCGCCCGTA 60.027 50.000 0.00 0.00 38.12 4.02
3118 3728 2.096174 CAGAGCTATATCTCGCCCGTAC 59.904 54.545 0.00 0.00 38.12 3.67
3119 3729 1.401199 GAGCTATATCTCGCCCGTACC 59.599 57.143 0.00 0.00 0.00 3.34
3120 3730 0.098376 GCTATATCTCGCCCGTACCG 59.902 60.000 0.00 0.00 0.00 4.02
3121 3731 1.730501 CTATATCTCGCCCGTACCGA 58.269 55.000 0.00 0.00 0.00 4.69
3126 3736 2.191375 TCGCCCGTACCGAGAGAT 59.809 61.111 0.00 0.00 0.00 2.75
3127 3737 1.890979 TCGCCCGTACCGAGAGATC 60.891 63.158 0.00 0.00 0.00 2.75
3128 3738 2.905807 CGCCCGTACCGAGAGATCC 61.906 68.421 0.00 0.00 0.00 3.36
3129 3739 2.562876 GCCCGTACCGAGAGATCCC 61.563 68.421 0.00 0.00 0.00 3.85
3130 3740 1.150992 CCCGTACCGAGAGATCCCT 59.849 63.158 0.00 0.00 0.00 4.20
3131 3741 0.890090 CCCGTACCGAGAGATCCCTC 60.890 65.000 0.00 0.00 39.72 4.30
3132 3742 0.179026 CCGTACCGAGAGATCCCTCA 60.179 60.000 5.00 0.00 41.87 3.86
3133 3743 1.231221 CGTACCGAGAGATCCCTCAG 58.769 60.000 5.00 0.00 41.87 3.35
3134 3744 1.475392 CGTACCGAGAGATCCCTCAGT 60.475 57.143 5.00 1.65 41.87 3.41
3135 3745 2.223745 GTACCGAGAGATCCCTCAGTC 58.776 57.143 5.00 0.00 41.87 3.51
3136 3746 0.106419 ACCGAGAGATCCCTCAGTCC 60.106 60.000 5.00 0.00 41.87 3.85
3137 3747 0.825840 CCGAGAGATCCCTCAGTCCC 60.826 65.000 5.00 0.00 41.87 4.46
3138 3748 0.106469 CGAGAGATCCCTCAGTCCCA 60.106 60.000 5.00 0.00 41.87 4.37
3139 3749 1.408969 GAGAGATCCCTCAGTCCCAC 58.591 60.000 0.00 0.00 41.87 4.61
3140 3750 0.031616 AGAGATCCCTCAGTCCCACC 60.032 60.000 0.00 0.00 41.87 4.61
3141 3751 0.031616 GAGATCCCTCAGTCCCACCT 60.032 60.000 0.00 0.00 39.24 4.00
3142 3752 0.419459 AGATCCCTCAGTCCCACCTT 59.581 55.000 0.00 0.00 0.00 3.50
3143 3753 1.203492 AGATCCCTCAGTCCCACCTTT 60.203 52.381 0.00 0.00 0.00 3.11
3144 3754 0.995024 ATCCCTCAGTCCCACCTTTG 59.005 55.000 0.00 0.00 0.00 2.77
3145 3755 1.133809 TCCCTCAGTCCCACCTTTGG 61.134 60.000 0.00 0.00 43.50 3.28
3146 3756 1.303643 CCTCAGTCCCACCTTTGGC 60.304 63.158 0.00 0.00 42.35 4.52
3147 3757 1.303643 CTCAGTCCCACCTTTGGCC 60.304 63.158 0.00 0.00 42.35 5.36
3148 3758 1.774217 TCAGTCCCACCTTTGGCCT 60.774 57.895 3.32 0.00 42.35 5.19
3149 3759 1.604593 CAGTCCCACCTTTGGCCTG 60.605 63.158 3.32 0.00 42.35 4.85
3150 3760 1.774217 AGTCCCACCTTTGGCCTGA 60.774 57.895 3.32 0.00 42.35 3.86
3151 3761 1.303643 GTCCCACCTTTGGCCTGAG 60.304 63.158 3.32 1.02 42.35 3.35
3152 3762 2.036256 CCCACCTTTGGCCTGAGG 59.964 66.667 19.64 19.64 42.35 3.86
3153 3763 2.845345 CCCACCTTTGGCCTGAGGT 61.845 63.158 20.79 20.79 46.99 3.85
3154 3764 1.153756 CCACCTTTGGCCTGAGGTT 59.846 57.895 23.06 9.93 43.64 3.50
3155 3765 0.404040 CCACCTTTGGCCTGAGGTTA 59.596 55.000 23.06 0.00 43.64 2.85
3156 3766 1.614317 CCACCTTTGGCCTGAGGTTAG 60.614 57.143 23.06 15.61 43.64 2.34
3157 3767 0.038310 ACCTTTGGCCTGAGGTTAGC 59.962 55.000 20.79 0.00 43.64 3.09
3158 3768 0.038166 CCTTTGGCCTGAGGTTAGCA 59.962 55.000 14.73 0.00 0.00 3.49
3159 3769 1.457346 CTTTGGCCTGAGGTTAGCAG 58.543 55.000 3.32 0.00 0.00 4.24
3160 3770 0.771127 TTTGGCCTGAGGTTAGCAGT 59.229 50.000 3.32 0.00 0.00 4.40
3161 3771 0.771127 TTGGCCTGAGGTTAGCAGTT 59.229 50.000 3.32 0.00 0.00 3.16
3162 3772 0.771127 TGGCCTGAGGTTAGCAGTTT 59.229 50.000 3.32 0.00 0.00 2.66
3163 3773 1.144913 TGGCCTGAGGTTAGCAGTTTT 59.855 47.619 3.32 0.00 0.00 2.43
3164 3774 2.239400 GGCCTGAGGTTAGCAGTTTTT 58.761 47.619 0.00 0.00 0.00 1.94
3165 3775 2.029918 GGCCTGAGGTTAGCAGTTTTTG 60.030 50.000 0.00 0.00 0.00 2.44
3166 3776 2.029918 GCCTGAGGTTAGCAGTTTTTGG 60.030 50.000 0.00 0.00 0.00 3.28
3167 3777 2.558359 CCTGAGGTTAGCAGTTTTTGGG 59.442 50.000 0.00 0.00 0.00 4.12
3168 3778 3.486383 CTGAGGTTAGCAGTTTTTGGGA 58.514 45.455 0.00 0.00 0.00 4.37
3169 3779 3.888930 CTGAGGTTAGCAGTTTTTGGGAA 59.111 43.478 0.00 0.00 0.00 3.97
3170 3780 3.888930 TGAGGTTAGCAGTTTTTGGGAAG 59.111 43.478 0.00 0.00 0.00 3.46
3171 3781 3.889538 GAGGTTAGCAGTTTTTGGGAAGT 59.110 43.478 0.00 0.00 0.00 3.01
3172 3782 4.286707 AGGTTAGCAGTTTTTGGGAAGTT 58.713 39.130 0.00 0.00 0.00 2.66
3173 3783 4.714802 AGGTTAGCAGTTTTTGGGAAGTTT 59.285 37.500 0.00 0.00 0.00 2.66
3174 3784 5.894964 AGGTTAGCAGTTTTTGGGAAGTTTA 59.105 36.000 0.00 0.00 0.00 2.01
3175 3785 6.381707 AGGTTAGCAGTTTTTGGGAAGTTTAA 59.618 34.615 0.00 0.00 0.00 1.52
3176 3786 6.477688 GGTTAGCAGTTTTTGGGAAGTTTAAC 59.522 38.462 0.00 0.00 0.00 2.01
3177 3787 5.018539 AGCAGTTTTTGGGAAGTTTAACC 57.981 39.130 0.00 0.00 0.00 2.85
3178 3788 3.799963 GCAGTTTTTGGGAAGTTTAACCG 59.200 43.478 0.00 0.00 0.00 4.44
3179 3789 4.678574 GCAGTTTTTGGGAAGTTTAACCGT 60.679 41.667 0.00 0.00 0.00 4.83
3180 3790 5.412640 CAGTTTTTGGGAAGTTTAACCGTT 58.587 37.500 0.00 0.00 0.00 4.44
3181 3791 5.870433 CAGTTTTTGGGAAGTTTAACCGTTT 59.130 36.000 0.00 0.00 0.00 3.60
3182 3792 6.035220 CAGTTTTTGGGAAGTTTAACCGTTTC 59.965 38.462 0.00 0.00 0.00 2.78
3183 3793 4.652421 TTTGGGAAGTTTAACCGTTTCC 57.348 40.909 6.17 6.17 38.66 3.13
3184 3794 2.220313 TGGGAAGTTTAACCGTTTCCG 58.780 47.619 8.02 0.00 39.96 4.30
3185 3795 2.221169 GGGAAGTTTAACCGTTTCCGT 58.779 47.619 8.02 0.00 39.96 4.69
3186 3796 2.224079 GGGAAGTTTAACCGTTTCCGTC 59.776 50.000 8.02 0.00 39.96 4.79
3187 3797 2.224079 GGAAGTTTAACCGTTTCCGTCC 59.776 50.000 0.01 0.00 30.77 4.79
3188 3798 2.618442 AGTTTAACCGTTTCCGTCCA 57.382 45.000 0.00 0.00 0.00 4.02
3189 3799 2.486918 AGTTTAACCGTTTCCGTCCAG 58.513 47.619 0.00 0.00 0.00 3.86
3190 3800 2.158914 AGTTTAACCGTTTCCGTCCAGT 60.159 45.455 0.00 0.00 0.00 4.00
3191 3801 2.613595 GTTTAACCGTTTCCGTCCAGTT 59.386 45.455 0.00 0.00 0.00 3.16
3192 3802 2.618442 TAACCGTTTCCGTCCAGTTT 57.382 45.000 0.00 0.00 0.00 2.66
3193 3803 2.618442 AACCGTTTCCGTCCAGTTTA 57.382 45.000 0.00 0.00 0.00 2.01
3194 3804 2.618442 ACCGTTTCCGTCCAGTTTAA 57.382 45.000 0.00 0.00 0.00 1.52
3195 3805 2.486918 ACCGTTTCCGTCCAGTTTAAG 58.513 47.619 0.00 0.00 0.00 1.85
3196 3806 2.102925 ACCGTTTCCGTCCAGTTTAAGA 59.897 45.455 0.00 0.00 0.00 2.10
3197 3807 3.132925 CCGTTTCCGTCCAGTTTAAGAA 58.867 45.455 0.00 0.00 0.00 2.52
3198 3808 3.059393 CCGTTTCCGTCCAGTTTAAGAAC 60.059 47.826 0.00 0.00 35.97 3.01
3199 3809 3.059393 CGTTTCCGTCCAGTTTAAGAACC 60.059 47.826 0.00 0.00 36.39 3.62
3200 3810 4.132336 GTTTCCGTCCAGTTTAAGAACCT 58.868 43.478 0.00 0.00 36.39 3.50
3201 3811 5.299949 GTTTCCGTCCAGTTTAAGAACCTA 58.700 41.667 0.00 0.00 36.39 3.08
3202 3812 4.525912 TCCGTCCAGTTTAAGAACCTAC 57.474 45.455 0.00 0.00 36.39 3.18
3203 3813 3.259123 TCCGTCCAGTTTAAGAACCTACC 59.741 47.826 0.00 0.00 36.39 3.18
3204 3814 3.260128 CCGTCCAGTTTAAGAACCTACCT 59.740 47.826 0.00 0.00 36.39 3.08
3205 3815 4.262765 CCGTCCAGTTTAAGAACCTACCTT 60.263 45.833 0.00 0.00 36.39 3.50
3206 3816 4.689345 CGTCCAGTTTAAGAACCTACCTTG 59.311 45.833 0.00 0.00 36.39 3.61
3207 3817 4.454847 GTCCAGTTTAAGAACCTACCTTGC 59.545 45.833 0.00 0.00 36.39 4.01
3208 3818 3.435671 CCAGTTTAAGAACCTACCTTGCG 59.564 47.826 0.00 0.00 36.39 4.85
3209 3819 4.062991 CAGTTTAAGAACCTACCTTGCGT 58.937 43.478 0.00 0.00 36.39 5.24
3210 3820 4.514066 CAGTTTAAGAACCTACCTTGCGTT 59.486 41.667 0.00 0.00 36.39 4.84
3211 3821 5.008316 CAGTTTAAGAACCTACCTTGCGTTT 59.992 40.000 0.00 0.00 36.39 3.60
3212 3822 5.591472 AGTTTAAGAACCTACCTTGCGTTTT 59.409 36.000 0.00 0.00 36.39 2.43
3213 3823 6.095860 AGTTTAAGAACCTACCTTGCGTTTTT 59.904 34.615 0.00 0.00 36.39 1.94
3236 3846 6.726035 TTTTTCTTTGTGCGTTTCTTATCG 57.274 33.333 0.00 0.00 0.00 2.92
3237 3847 4.398549 TTCTTTGTGCGTTTCTTATCGG 57.601 40.909 0.00 0.00 0.00 4.18
3238 3848 2.158841 TCTTTGTGCGTTTCTTATCGGC 59.841 45.455 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.009143 AGGACAATGTAACTGGGAGGAAC 59.991 47.826 0.00 0.00 0.00 3.62
17 18 2.305927 ACAGGACAATGTAACTGGGAGG 59.694 50.000 17.82 0.00 0.00 4.30
62 63 4.162320 TCAGAAAAGTTGAGACTGTGACCT 59.838 41.667 0.00 0.00 35.91 3.85
175 178 4.261801 ACTGATAAACGGAATCAACTGGG 58.738 43.478 0.00 0.00 33.13 4.45
178 181 6.231211 ACAGAACTGATAAACGGAATCAACT 58.769 36.000 8.87 0.00 33.13 3.16
200 203 3.852286 ACGCGGTAGATCATAAACAACA 58.148 40.909 12.47 0.00 0.00 3.33
201 204 5.954434 TTACGCGGTAGATCATAAACAAC 57.046 39.130 12.47 0.00 0.00 3.32
266 270 5.228012 GCGTATAAAAAGCATGCTTTCAGAC 59.772 40.000 38.26 31.54 44.50 3.51
288 293 5.214417 TGTCATCTTCAAAATCAAGTTGCG 58.786 37.500 0.00 0.00 0.00 4.85
335 343 2.510928 TCATGATGTCAATGCCACCA 57.489 45.000 0.00 0.00 0.00 4.17
400 408 9.972106 ATCAAATATGTCCTCTCTCTTCTTTTT 57.028 29.630 0.00 0.00 0.00 1.94
401 409 9.972106 AATCAAATATGTCCTCTCTCTTCTTTT 57.028 29.630 0.00 0.00 0.00 2.27
404 412 9.206690 TGTAATCAAATATGTCCTCTCTCTTCT 57.793 33.333 0.00 0.00 0.00 2.85
405 413 9.474920 CTGTAATCAAATATGTCCTCTCTCTTC 57.525 37.037 0.00 0.00 0.00 2.87
406 414 7.930865 GCTGTAATCAAATATGTCCTCTCTCTT 59.069 37.037 0.00 0.00 0.00 2.85
407 415 7.289782 AGCTGTAATCAAATATGTCCTCTCTCT 59.710 37.037 0.00 0.00 0.00 3.10
408 416 7.441017 AGCTGTAATCAAATATGTCCTCTCTC 58.559 38.462 0.00 0.00 0.00 3.20
409 417 7.372260 AGCTGTAATCAAATATGTCCTCTCT 57.628 36.000 0.00 0.00 0.00 3.10
410 418 7.519649 GCAAGCTGTAATCAAATATGTCCTCTC 60.520 40.741 0.00 0.00 0.00 3.20
411 419 6.261826 GCAAGCTGTAATCAAATATGTCCTCT 59.738 38.462 0.00 0.00 0.00 3.69
412 420 6.261826 AGCAAGCTGTAATCAAATATGTCCTC 59.738 38.462 0.00 0.00 0.00 3.71
438 446 5.098218 TGGCAATTTTACTTGTACGACAC 57.902 39.130 0.00 0.00 0.00 3.67
453 461 0.109781 CGCAGCGTTACTTGGCAATT 60.110 50.000 6.65 0.00 0.00 2.32
491 506 5.263599 TGGCAAACTCATCCACAATTCTAT 58.736 37.500 0.00 0.00 0.00 1.98
585 862 7.132863 TCTACGATGAGAAAGTGATTCATACG 58.867 38.462 0.00 0.00 40.72 3.06
713 999 3.313526 TGACAAAGCTGAAAGTGCTCTTC 59.686 43.478 0.74 0.00 40.22 2.87
718 1004 3.427161 AAGTGACAAAGCTGAAAGTGC 57.573 42.857 0.00 0.00 35.30 4.40
744 1030 1.066257 GTGTGTGTGCCTTGCCTTG 59.934 57.895 0.00 0.00 0.00 3.61
752 1038 0.674895 GGAGATCCTGTGTGTGTGCC 60.675 60.000 0.00 0.00 0.00 5.01
780 1099 1.856629 CACCAAGGGAGATGGCAAAT 58.143 50.000 0.00 0.00 41.89 2.32
806 1125 1.228862 GTGGGGCAGTGGGAACAAT 60.229 57.895 0.00 0.00 46.06 2.71
808 1127 1.462432 TAGTGGGGCAGTGGGAACA 60.462 57.895 0.00 0.00 38.70 3.18
809 1128 1.299976 CTAGTGGGGCAGTGGGAAC 59.700 63.158 0.00 0.00 0.00 3.62
811 1130 3.009115 GCTAGTGGGGCAGTGGGA 61.009 66.667 0.00 0.00 0.00 4.37
812 1131 2.615227 GATGCTAGTGGGGCAGTGGG 62.615 65.000 0.00 0.00 43.15 4.61
813 1132 1.153086 GATGCTAGTGGGGCAGTGG 60.153 63.158 0.00 0.00 43.15 4.00
814 1133 1.153086 GGATGCTAGTGGGGCAGTG 60.153 63.158 0.00 0.00 43.15 3.66
818 1137 1.449353 CTGAGGATGCTAGTGGGGC 59.551 63.158 0.00 0.00 0.00 5.80
832 1155 0.676151 GGAGGGAAACAGCAGCTGAG 60.676 60.000 29.70 11.70 35.18 3.35
845 1168 4.235372 ACTTTCTCTTTTCTCAGGAGGGA 58.765 43.478 0.00 0.00 0.00 4.20
953 1276 4.153411 TCAGGGAGTTCTTATAGCTAGCC 58.847 47.826 12.13 0.00 0.00 3.93
979 1302 1.464687 CGCAAGAAACAAGAGCGGATG 60.465 52.381 0.00 0.00 44.20 3.51
1121 1457 0.387565 CAAACCGGACCCAAACAAGG 59.612 55.000 9.46 0.00 0.00 3.61
1168 1504 1.639635 GGGTGAGATGCAGGGTGGAT 61.640 60.000 0.00 0.00 0.00 3.41
1255 1591 2.322830 CGTCATGCTGCTGCTGTGT 61.323 57.895 17.00 0.00 40.48 3.72
1281 1617 3.060000 ACGACGCCGATGTCCTCA 61.060 61.111 0.00 0.00 39.50 3.86
1319 1655 0.176449 CACCATCATCGTGAGCTCCA 59.824 55.000 12.15 0.00 32.77 3.86
1347 1683 1.821061 CTTCTGCACCGGAGACCAGT 61.821 60.000 9.46 0.00 0.00 4.00
1348 1684 1.079543 CTTCTGCACCGGAGACCAG 60.080 63.158 9.46 8.75 0.00 4.00
1382 1718 3.353836 CGGCAACAGGGGTGTTCG 61.354 66.667 0.00 0.00 0.00 3.95
1387 1723 2.750350 CTCTTCGGCAACAGGGGT 59.250 61.111 0.00 0.00 0.00 4.95
1416 1752 1.257750 CCACCATCACCTCGTCCTCA 61.258 60.000 0.00 0.00 0.00 3.86
1669 2005 1.040646 ACCTCATCATCGGCGTACAT 58.959 50.000 6.85 0.00 0.00 2.29
1673 2009 0.465705 ATCAACCTCATCATCGGCGT 59.534 50.000 6.85 0.00 0.00 5.68
1693 2029 6.581171 ATTCAAGAACACAAGGGAAGAATC 57.419 37.500 0.00 0.00 0.00 2.52
1695 2031 7.889873 TTAATTCAAGAACACAAGGGAAGAA 57.110 32.000 0.00 0.00 0.00 2.52
1723 2059 5.531287 GGAACAGTGACAAGATTAAAGTGGT 59.469 40.000 0.00 0.00 0.00 4.16
1737 2083 4.369182 CATATCGTTAGGGGAACAGTGAC 58.631 47.826 0.00 0.00 37.99 3.67
1740 2086 3.039011 AGCATATCGTTAGGGGAACAGT 58.961 45.455 0.00 0.00 37.99 3.55
1749 2095 7.930513 TGTGATTGTTAGAGCATATCGTTAG 57.069 36.000 0.00 0.00 0.00 2.34
1756 2102 6.425210 AGGCTATGTGATTGTTAGAGCATA 57.575 37.500 0.00 0.00 0.00 3.14
1769 2115 9.515226 AAAATGAAGTTTAAGTAGGCTATGTGA 57.485 29.630 0.00 0.00 0.00 3.58
1838 2193 2.886523 CCCAAAGTTGCTGAACTCATCA 59.113 45.455 0.00 0.00 41.87 3.07
1858 2213 8.868522 TTCTATTCCAATTGGATATGATGACC 57.131 34.615 27.53 0.00 44.98 4.02
1867 2242 8.355169 CACGATCAAATTCTATTCCAATTGGAT 58.645 33.333 27.53 18.64 44.98 3.41
1868 2243 7.681782 GCACGATCAAATTCTATTCCAATTGGA 60.682 37.037 23.63 23.63 43.73 3.53
1869 2244 6.418819 GCACGATCAAATTCTATTCCAATTGG 59.581 38.462 19.08 19.08 0.00 3.16
1872 2247 6.949352 AGCACGATCAAATTCTATTCCAAT 57.051 33.333 0.00 0.00 0.00 3.16
1873 2248 6.599244 AGAAGCACGATCAAATTCTATTCCAA 59.401 34.615 0.00 0.00 0.00 3.53
1874 2249 6.115446 AGAAGCACGATCAAATTCTATTCCA 58.885 36.000 0.00 0.00 0.00 3.53
1875 2250 6.610741 AGAAGCACGATCAAATTCTATTCC 57.389 37.500 0.00 0.00 0.00 3.01
1876 2251 8.902040 AAAAGAAGCACGATCAAATTCTATTC 57.098 30.769 0.00 0.00 30.30 1.75
1880 2255 9.185192 CTTTAAAAAGAAGCACGATCAAATTCT 57.815 29.630 0.00 0.00 38.28 2.40
1881 2256 9.180678 TCTTTAAAAAGAAGCACGATCAAATTC 57.819 29.630 2.68 0.00 41.75 2.17
1914 2289 5.470047 ACAGTGGTGTACTAGAAAGAAGG 57.530 43.478 0.00 0.00 37.60 3.46
1931 2306 7.141363 GCTTTGGCCTGATAAAATATACAGTG 58.859 38.462 3.32 0.00 0.00 3.66
1932 2307 6.833416 TGCTTTGGCCTGATAAAATATACAGT 59.167 34.615 3.32 0.00 37.74 3.55
1960 2335 2.551071 GGCCATTTCCTCCCTATTCTCG 60.551 54.545 0.00 0.00 0.00 4.04
1973 2348 1.607467 AGGTGCAGTGGGCCATTTC 60.607 57.895 10.70 0.00 43.89 2.17
1994 2369 6.957984 TCAGACAGAAAGAAGATCAAATCG 57.042 37.500 0.00 0.00 0.00 3.34
2040 2415 0.685097 TTCGGTGCTTTAGGCTCACT 59.315 50.000 0.00 0.00 42.39 3.41
2041 2416 1.079503 CTTCGGTGCTTTAGGCTCAC 58.920 55.000 0.00 0.00 42.39 3.51
2042 2417 0.973632 TCTTCGGTGCTTTAGGCTCA 59.026 50.000 0.00 0.00 42.39 4.26
2043 2418 2.094762 TTCTTCGGTGCTTTAGGCTC 57.905 50.000 0.00 0.00 42.39 4.70
2056 2431 5.023533 TCACCCCTAAATGAGATTCTTCG 57.976 43.478 0.00 0.00 0.00 3.79
2091 2468 1.676006 AGCAAAACCGTCAGGAAACAG 59.324 47.619 0.00 0.00 41.02 3.16
2097 2474 1.901650 GAGCGAGCAAAACCGTCAGG 61.902 60.000 0.00 0.00 45.13 3.86
2112 2489 1.521840 CGATGAATTCTCTGCAGAGCG 59.478 52.381 34.48 25.85 41.80 5.03
2114 2491 2.284684 GCACGATGAATTCTCTGCAGAG 59.715 50.000 33.73 33.73 43.36 3.35
2228 2617 4.980805 TGGCACGTCAGAACCCGC 62.981 66.667 0.00 0.00 0.00 6.13
2235 2624 0.320247 AGAAGCTTCTGGCACGTCAG 60.320 55.000 27.96 0.00 44.79 3.51
2261 2653 0.175531 ATGTCATGGATGCGTCGACA 59.824 50.000 17.16 14.83 40.59 4.35
2340 2740 1.429148 GCACACATACAGGCTACGGC 61.429 60.000 0.00 0.00 37.82 5.68
2341 2741 0.108377 TGCACACATACAGGCTACGG 60.108 55.000 0.00 0.00 0.00 4.02
2342 2742 1.594397 CATGCACACATACAGGCTACG 59.406 52.381 0.00 0.00 33.67 3.51
2343 2743 2.632377 ACATGCACACATACAGGCTAC 58.368 47.619 0.00 0.00 33.67 3.58
2344 2744 4.687901 ATACATGCACACATACAGGCTA 57.312 40.909 0.00 0.00 33.67 3.93
2345 2745 3.565764 ATACATGCACACATACAGGCT 57.434 42.857 0.00 0.00 33.67 4.58
2346 2746 7.008440 CATATATACATGCACACATACAGGC 57.992 40.000 0.00 0.00 33.67 4.85
2387 2827 0.748450 CCGCTGGTAGGAAATACGGA 59.252 55.000 0.00 0.00 41.61 4.69
2388 2828 0.748450 TCCGCTGGTAGGAAATACGG 59.252 55.000 0.00 0.00 40.47 4.02
2389 2829 2.223971 ACATCCGCTGGTAGGAAATACG 60.224 50.000 0.00 0.00 41.69 3.06
2390 2830 3.131396 CACATCCGCTGGTAGGAAATAC 58.869 50.000 0.00 0.00 41.69 1.89
2391 2831 3.035363 TCACATCCGCTGGTAGGAAATA 58.965 45.455 0.00 0.00 41.69 1.40
2405 2845 5.473504 ACCCGAAATAATGCTATTCACATCC 59.526 40.000 0.00 0.00 0.00 3.51
2439 2879 2.093394 TGGATGAAGTAATTTCGCGGGA 60.093 45.455 6.13 0.00 38.71 5.14
2440 2880 2.031683 GTGGATGAAGTAATTTCGCGGG 59.968 50.000 6.13 0.00 38.71 6.13
2456 2896 1.917872 GAGCGGATCTCCTAGTGGAT 58.082 55.000 0.00 0.00 42.29 3.41
2457 2897 3.423344 GAGCGGATCTCCTAGTGGA 57.577 57.895 0.00 0.00 40.69 4.02
2465 2905 0.665972 GAGCAATCGGAGCGGATCTC 60.666 60.000 0.00 0.00 41.15 2.75
2466 2906 1.112315 AGAGCAATCGGAGCGGATCT 61.112 55.000 0.00 0.00 37.01 2.75
2467 2907 0.943359 CAGAGCAATCGGAGCGGATC 60.943 60.000 0.00 0.00 37.01 3.36
2468 2908 1.068753 CAGAGCAATCGGAGCGGAT 59.931 57.895 0.00 0.00 37.01 4.18
2469 2909 1.035385 TACAGAGCAATCGGAGCGGA 61.035 55.000 0.00 0.00 37.01 5.54
2470 2910 0.596083 CTACAGAGCAATCGGAGCGG 60.596 60.000 0.00 0.00 37.01 5.52
2471 2911 0.382158 TCTACAGAGCAATCGGAGCG 59.618 55.000 0.00 0.00 37.01 5.03
2472 2912 2.586258 TTCTACAGAGCAATCGGAGC 57.414 50.000 0.00 0.00 0.00 4.70
2473 2913 3.247173 GCATTTCTACAGAGCAATCGGAG 59.753 47.826 0.00 0.00 0.00 4.63
2475 2915 2.938451 TGCATTTCTACAGAGCAATCGG 59.062 45.455 0.00 0.00 31.42 4.18
2476 2916 3.620374 ACTGCATTTCTACAGAGCAATCG 59.380 43.478 0.00 0.00 37.35 3.34
2477 2917 4.633126 TGACTGCATTTCTACAGAGCAATC 59.367 41.667 0.00 0.00 37.35 2.67
2478 2918 4.582869 TGACTGCATTTCTACAGAGCAAT 58.417 39.130 0.00 0.00 37.35 3.56
2514 2982 2.671396 TCTTCTTTGCTATCGCGGAAAC 59.329 45.455 6.13 0.00 39.65 2.78
2519 2987 4.520743 TTGAATCTTCTTTGCTATCGCG 57.479 40.909 0.00 0.00 39.65 5.87
2525 2993 3.632189 GTGCGTTTGAATCTTCTTTGCT 58.368 40.909 0.00 0.00 0.00 3.91
2526 2994 2.401720 CGTGCGTTTGAATCTTCTTTGC 59.598 45.455 0.00 0.00 0.00 3.68
2588 3110 0.762418 AGATTCACCCAACGGACACA 59.238 50.000 0.00 0.00 0.00 3.72
2599 3121 4.778143 ACGCCGGCCAGATTCACC 62.778 66.667 23.46 0.00 0.00 4.02
2600 3122 3.499737 CACGCCGGCCAGATTCAC 61.500 66.667 23.46 0.00 0.00 3.18
2648 3170 0.387929 ACCGACTGCATATACCCACG 59.612 55.000 0.00 0.00 0.00 4.94
2650 3172 0.671796 CGACCGACTGCATATACCCA 59.328 55.000 0.00 0.00 0.00 4.51
2654 3237 1.244816 CCTCCGACCGACTGCATATA 58.755 55.000 0.00 0.00 0.00 0.86
2664 3247 1.437986 GAAGATGGACCTCCGACCG 59.562 63.158 0.00 0.00 39.43 4.79
2666 3249 1.823976 GGGAAGATGGACCTCCGAC 59.176 63.158 0.00 0.00 39.43 4.79
2667 3250 1.756950 CGGGAAGATGGACCTCCGA 60.757 63.158 0.00 0.00 39.83 4.55
2674 3257 3.060020 GACGCGACGGGAAGATGGA 62.060 63.158 15.93 0.00 0.00 3.41
2675 3258 2.582498 GACGCGACGGGAAGATGG 60.582 66.667 15.93 0.00 0.00 3.51
2676 3259 2.949678 CGACGCGACGGGAAGATG 60.950 66.667 22.72 0.00 0.00 2.90
2677 3260 4.849329 GCGACGCGACGGGAAGAT 62.849 66.667 29.83 0.00 0.00 2.40
2710 3293 1.874019 CGATCGGTCCAGCGAACAG 60.874 63.158 7.38 0.00 0.00 3.16
2711 3294 2.180769 CGATCGGTCCAGCGAACA 59.819 61.111 7.38 0.00 0.00 3.18
2712 3295 3.255379 GCGATCGGTCCAGCGAAC 61.255 66.667 18.30 1.59 0.00 3.95
2713 3296 4.508128 GGCGATCGGTCCAGCGAA 62.508 66.667 18.30 0.00 0.00 4.70
2749 3332 1.953686 AGGAAAACCACCATTCACACG 59.046 47.619 0.00 0.00 0.00 4.49
2750 3333 2.545742 GCAGGAAAACCACCATTCACAC 60.546 50.000 0.00 0.00 0.00 3.82
2752 3335 1.000843 GGCAGGAAAACCACCATTCAC 59.999 52.381 0.00 0.00 0.00 3.18
2756 3339 0.779997 AGAGGCAGGAAAACCACCAT 59.220 50.000 0.00 0.00 0.00 3.55
2760 3343 1.480498 GGGAAAGAGGCAGGAAAACCA 60.480 52.381 0.00 0.00 0.00 3.67
2762 3345 1.995376 TGGGAAAGAGGCAGGAAAAC 58.005 50.000 0.00 0.00 0.00 2.43
2767 3350 1.213678 TGATCATGGGAAAGAGGCAGG 59.786 52.381 0.00 0.00 0.00 4.85
2770 3353 1.672881 CGTTGATCATGGGAAAGAGGC 59.327 52.381 0.00 0.00 0.00 4.70
2776 3359 3.005261 CCAAACAACGTTGATCATGGGAA 59.995 43.478 33.66 0.00 0.00 3.97
2779 3362 3.913548 TCCAAACAACGTTGATCATGG 57.086 42.857 33.66 28.75 0.00 3.66
2789 3372 2.700694 GACGTGTTCTTCCAAACAACG 58.299 47.619 0.00 0.00 40.62 4.10
2790 3373 2.349275 TCGACGTGTTCTTCCAAACAAC 59.651 45.455 0.00 0.00 40.62 3.32
2795 3378 3.243602 TGAATCTCGACGTGTTCTTCCAA 60.244 43.478 0.00 0.00 0.00 3.53
2796 3379 2.295070 TGAATCTCGACGTGTTCTTCCA 59.705 45.455 0.00 0.00 0.00 3.53
2828 3429 0.036765 TTCCCATCGTCCTTTGTCGG 60.037 55.000 0.00 0.00 0.00 4.79
2834 3435 1.627297 GGCCTCTTCCCATCGTCCTT 61.627 60.000 0.00 0.00 0.00 3.36
2835 3436 2.066999 GGCCTCTTCCCATCGTCCT 61.067 63.158 0.00 0.00 0.00 3.85
2839 3440 2.107141 GACGGCCTCTTCCCATCG 59.893 66.667 0.00 0.00 0.00 3.84
2888 3490 1.000283 CTCTACCTCCGGATGCATGTC 60.000 57.143 3.57 0.00 0.00 3.06
2893 3495 0.676736 CCTTCTCTACCTCCGGATGC 59.323 60.000 3.57 0.00 0.00 3.91
2904 3506 0.325933 TCACCCGTCGTCCTTCTCTA 59.674 55.000 0.00 0.00 0.00 2.43
2907 3509 0.974383 AAATCACCCGTCGTCCTTCT 59.026 50.000 0.00 0.00 0.00 2.85
2955 3557 1.151668 GCATTGTCACTCAAGCTCGT 58.848 50.000 0.00 0.00 39.55 4.18
2958 3560 0.879765 GCAGCATTGTCACTCAAGCT 59.120 50.000 0.00 0.00 39.55 3.74
2960 3562 1.128136 CGAGCAGCATTGTCACTCAAG 59.872 52.381 0.00 0.00 39.55 3.02
2971 3573 1.523258 GGCATCAGACGAGCAGCAT 60.523 57.895 0.00 0.00 0.00 3.79
3006 3614 3.310860 AATCAGACCGTCGGCACCC 62.311 63.158 12.28 0.00 0.00 4.61
3007 3615 2.100631 CAATCAGACCGTCGGCACC 61.101 63.158 12.28 0.55 0.00 5.01
3008 3616 2.100631 CCAATCAGACCGTCGGCAC 61.101 63.158 12.28 6.04 0.00 5.01
3032 3642 2.203938 AAGAACGGGAGGGCCAGA 60.204 61.111 6.18 0.00 35.15 3.86
3040 3650 1.133915 GGCCCAATATGAAGAACGGGA 60.134 52.381 0.00 0.00 35.57 5.14
3041 3651 1.318576 GGCCCAATATGAAGAACGGG 58.681 55.000 0.00 0.00 36.71 5.28
3042 3652 0.944386 CGGCCCAATATGAAGAACGG 59.056 55.000 0.00 0.00 0.00 4.44
3043 3653 0.307760 GCGGCCCAATATGAAGAACG 59.692 55.000 0.00 0.00 0.00 3.95
3044 3654 1.388547 TGCGGCCCAATATGAAGAAC 58.611 50.000 0.00 0.00 0.00 3.01
3045 3655 2.363306 ATGCGGCCCAATATGAAGAA 57.637 45.000 0.00 0.00 0.00 2.52
3046 3656 2.371841 ACTATGCGGCCCAATATGAAGA 59.628 45.455 0.00 0.00 0.00 2.87
3047 3657 2.783135 ACTATGCGGCCCAATATGAAG 58.217 47.619 0.00 0.00 0.00 3.02
3048 3658 2.949177 ACTATGCGGCCCAATATGAA 57.051 45.000 0.00 0.00 0.00 2.57
3049 3659 2.236146 CCTACTATGCGGCCCAATATGA 59.764 50.000 0.00 0.00 0.00 2.15
3050 3660 2.632377 CCTACTATGCGGCCCAATATG 58.368 52.381 0.00 0.00 0.00 1.78
3051 3661 1.065418 GCCTACTATGCGGCCCAATAT 60.065 52.381 0.00 0.00 40.43 1.28
3052 3662 0.323629 GCCTACTATGCGGCCCAATA 59.676 55.000 0.00 0.00 40.43 1.90
3053 3663 1.073199 GCCTACTATGCGGCCCAAT 59.927 57.895 0.00 0.00 40.43 3.16
3054 3664 2.508928 GCCTACTATGCGGCCCAA 59.491 61.111 0.00 0.00 40.43 4.12
3058 3668 1.664965 CGGAAGCCTACTATGCGGC 60.665 63.158 0.00 0.00 46.65 6.53
3059 3669 4.655527 CGGAAGCCTACTATGCGG 57.344 61.111 0.00 0.00 0.00 5.69
3071 3681 2.521958 AATGGGTGAGTCGGCGGAAG 62.522 60.000 7.21 0.00 0.00 3.46
3072 3682 2.515996 GAATGGGTGAGTCGGCGGAA 62.516 60.000 7.21 0.00 0.00 4.30
3073 3683 3.000819 AATGGGTGAGTCGGCGGA 61.001 61.111 7.21 0.00 0.00 5.54
3074 3684 2.511600 GAATGGGTGAGTCGGCGG 60.512 66.667 7.21 0.00 0.00 6.13
3075 3685 2.511600 GGAATGGGTGAGTCGGCG 60.512 66.667 0.00 0.00 0.00 6.46
3076 3686 1.153349 GAGGAATGGGTGAGTCGGC 60.153 63.158 0.00 0.00 0.00 5.54
3077 3687 0.978146 AGGAGGAATGGGTGAGTCGG 60.978 60.000 0.00 0.00 0.00 4.79
3078 3688 0.461961 GAGGAGGAATGGGTGAGTCG 59.538 60.000 0.00 0.00 0.00 4.18
3079 3689 1.484240 CTGAGGAGGAATGGGTGAGTC 59.516 57.143 0.00 0.00 0.00 3.36
3080 3690 1.079490 TCTGAGGAGGAATGGGTGAGT 59.921 52.381 0.00 0.00 0.00 3.41
3081 3691 1.761784 CTCTGAGGAGGAATGGGTGAG 59.238 57.143 0.00 0.00 36.03 3.51
3082 3692 1.871418 CTCTGAGGAGGAATGGGTGA 58.129 55.000 0.00 0.00 36.03 4.02
3083 3693 0.179936 GCTCTGAGGAGGAATGGGTG 59.820 60.000 6.83 0.00 39.80 4.61
3084 3694 0.043940 AGCTCTGAGGAGGAATGGGT 59.956 55.000 6.83 0.00 39.80 4.51
3085 3695 2.094100 TAGCTCTGAGGAGGAATGGG 57.906 55.000 6.83 0.00 39.80 4.00
3086 3696 5.271598 AGATATAGCTCTGAGGAGGAATGG 58.728 45.833 6.83 0.00 39.80 3.16
3087 3697 5.066375 CGAGATATAGCTCTGAGGAGGAATG 59.934 48.000 15.61 0.00 39.80 2.67
3088 3698 5.192927 CGAGATATAGCTCTGAGGAGGAAT 58.807 45.833 15.61 0.00 39.80 3.01
3089 3699 4.584874 CGAGATATAGCTCTGAGGAGGAA 58.415 47.826 15.61 0.00 39.80 3.36
3090 3700 3.621214 GCGAGATATAGCTCTGAGGAGGA 60.621 52.174 15.61 0.00 39.80 3.71
3091 3701 2.682856 GCGAGATATAGCTCTGAGGAGG 59.317 54.545 15.61 0.03 39.80 4.30
3092 3702 2.682856 GGCGAGATATAGCTCTGAGGAG 59.317 54.545 15.61 0.71 42.18 3.69
3093 3703 2.619332 GGGCGAGATATAGCTCTGAGGA 60.619 54.545 15.61 0.00 32.71 3.71
3094 3704 1.748493 GGGCGAGATATAGCTCTGAGG 59.252 57.143 15.61 1.75 32.71 3.86
3095 3705 1.400142 CGGGCGAGATATAGCTCTGAG 59.600 57.143 15.61 0.00 32.71 3.35
3096 3706 1.271434 ACGGGCGAGATATAGCTCTGA 60.271 52.381 15.61 0.00 32.71 3.27
3097 3707 1.169577 ACGGGCGAGATATAGCTCTG 58.830 55.000 15.61 10.20 32.71 3.35
3098 3708 2.358015 GTACGGGCGAGATATAGCTCT 58.642 52.381 15.61 0.00 32.71 4.09
3099 3709 1.401199 GGTACGGGCGAGATATAGCTC 59.599 57.143 7.98 7.98 0.00 4.09
3100 3710 1.461559 GGTACGGGCGAGATATAGCT 58.538 55.000 0.00 0.00 0.00 3.32
3113 3723 0.179026 TGAGGGATCTCTCGGTACGG 60.179 60.000 17.80 0.00 44.79 4.02
3114 3724 1.231221 CTGAGGGATCTCTCGGTACG 58.769 60.000 21.66 2.76 45.54 3.67
3118 3728 0.825840 GGGACTGAGGGATCTCTCGG 60.826 65.000 27.02 27.02 43.77 4.63
3119 3729 0.106469 TGGGACTGAGGGATCTCTCG 60.106 60.000 17.80 14.21 40.58 4.04
3120 3730 1.408969 GTGGGACTGAGGGATCTCTC 58.591 60.000 16.23 16.23 40.58 3.20
3121 3731 0.031616 GGTGGGACTGAGGGATCTCT 60.032 60.000 0.00 0.00 40.58 3.10
3122 3732 0.031616 AGGTGGGACTGAGGGATCTC 60.032 60.000 0.00 0.00 40.36 2.75
3123 3733 0.419459 AAGGTGGGACTGAGGGATCT 59.581 55.000 0.00 0.00 0.00 2.75
3124 3734 1.065126 CAAAGGTGGGACTGAGGGATC 60.065 57.143 0.00 0.00 0.00 3.36
3125 3735 0.995024 CAAAGGTGGGACTGAGGGAT 59.005 55.000 0.00 0.00 0.00 3.85
3126 3736 1.133809 CCAAAGGTGGGACTGAGGGA 61.134 60.000 0.00 0.00 41.77 4.20
3127 3737 1.380302 CCAAAGGTGGGACTGAGGG 59.620 63.158 0.00 0.00 41.77 4.30
3128 3738 1.303643 GCCAAAGGTGGGACTGAGG 60.304 63.158 0.00 0.00 46.09 3.86
3129 3739 1.303643 GGCCAAAGGTGGGACTGAG 60.304 63.158 0.00 0.00 46.09 3.35
3130 3740 1.774217 AGGCCAAAGGTGGGACTGA 60.774 57.895 5.01 0.00 44.01 3.41
3131 3741 2.846532 AGGCCAAAGGTGGGACTG 59.153 61.111 5.01 0.00 44.01 3.51
3133 3743 1.303643 CTCAGGCCAAAGGTGGGAC 60.304 63.158 5.01 0.00 46.09 4.46
3134 3744 2.538141 CCTCAGGCCAAAGGTGGGA 61.538 63.158 5.01 0.00 46.09 4.37
3135 3745 2.036256 CCTCAGGCCAAAGGTGGG 59.964 66.667 5.01 0.00 46.09 4.61
3136 3746 0.404040 TAACCTCAGGCCAAAGGTGG 59.596 55.000 25.11 14.40 45.21 4.61
3137 3747 1.826385 CTAACCTCAGGCCAAAGGTG 58.174 55.000 25.11 12.94 45.21 4.00
3139 3749 0.038166 TGCTAACCTCAGGCCAAAGG 59.962 55.000 19.19 19.19 38.70 3.11
3140 3750 1.271597 ACTGCTAACCTCAGGCCAAAG 60.272 52.381 5.01 0.51 35.94 2.77
3141 3751 0.771127 ACTGCTAACCTCAGGCCAAA 59.229 50.000 5.01 0.00 35.94 3.28
3142 3752 0.771127 AACTGCTAACCTCAGGCCAA 59.229 50.000 5.01 0.00 35.94 4.52
3143 3753 0.771127 AAACTGCTAACCTCAGGCCA 59.229 50.000 5.01 0.00 35.94 5.36
3144 3754 1.911057 AAAACTGCTAACCTCAGGCC 58.089 50.000 0.00 0.00 35.94 5.19
3145 3755 2.029918 CCAAAAACTGCTAACCTCAGGC 60.030 50.000 0.00 0.00 35.94 4.85
3146 3756 2.558359 CCCAAAAACTGCTAACCTCAGG 59.442 50.000 0.00 0.00 35.94 3.86
3147 3757 3.486383 TCCCAAAAACTGCTAACCTCAG 58.514 45.455 0.00 0.00 37.56 3.35
3148 3758 3.586470 TCCCAAAAACTGCTAACCTCA 57.414 42.857 0.00 0.00 0.00 3.86
3149 3759 3.889538 ACTTCCCAAAAACTGCTAACCTC 59.110 43.478 0.00 0.00 0.00 3.85
3150 3760 3.910989 ACTTCCCAAAAACTGCTAACCT 58.089 40.909 0.00 0.00 0.00 3.50
3151 3761 4.665833 AACTTCCCAAAAACTGCTAACC 57.334 40.909 0.00 0.00 0.00 2.85
3152 3762 6.477688 GGTTAAACTTCCCAAAAACTGCTAAC 59.522 38.462 0.00 0.00 0.00 2.34
3153 3763 6.575267 GGTTAAACTTCCCAAAAACTGCTAA 58.425 36.000 0.00 0.00 0.00 3.09
3154 3764 5.221087 CGGTTAAACTTCCCAAAAACTGCTA 60.221 40.000 0.00 0.00 0.00 3.49
3155 3765 4.440940 CGGTTAAACTTCCCAAAAACTGCT 60.441 41.667 0.00 0.00 0.00 4.24
3156 3766 3.799963 CGGTTAAACTTCCCAAAAACTGC 59.200 43.478 0.00 0.00 0.00 4.40
3157 3767 5.001237 ACGGTTAAACTTCCCAAAAACTG 57.999 39.130 0.00 0.00 0.00 3.16
3158 3768 5.664294 AACGGTTAAACTTCCCAAAAACT 57.336 34.783 0.00 0.00 0.00 2.66
3159 3769 5.291614 GGAAACGGTTAAACTTCCCAAAAAC 59.708 40.000 0.91 0.00 32.71 2.43
3160 3770 5.417811 GGAAACGGTTAAACTTCCCAAAAA 58.582 37.500 0.91 0.00 32.71 1.94
3161 3771 5.008619 GGAAACGGTTAAACTTCCCAAAA 57.991 39.130 0.91 0.00 32.71 2.44
3162 3772 4.652421 GGAAACGGTTAAACTTCCCAAA 57.348 40.909 0.91 0.00 32.71 3.28
3172 3782 9.054077 GTTCTTAAACTGGACGGAAACGGTTAA 62.054 40.741 0.00 0.00 44.85 2.01
3173 3783 7.666306 GTTCTTAAACTGGACGGAAACGGTTA 61.666 42.308 0.00 0.00 44.85 2.85
3174 3784 6.930371 GTTCTTAAACTGGACGGAAACGGTT 61.930 44.000 0.00 0.00 44.85 4.44
3175 3785 5.506638 GTTCTTAAACTGGACGGAAACGGT 61.507 45.833 0.00 0.00 44.85 4.83
3176 3786 3.059393 GTTCTTAAACTGGACGGAAACGG 60.059 47.826 0.00 0.00 44.85 4.44
3177 3787 3.059393 GGTTCTTAAACTGGACGGAAACG 60.059 47.826 0.00 0.00 46.99 3.60
3178 3788 4.132336 AGGTTCTTAAACTGGACGGAAAC 58.868 43.478 0.00 0.00 35.61 2.78
3179 3789 4.426736 AGGTTCTTAAACTGGACGGAAA 57.573 40.909 0.00 0.00 35.61 3.13
3180 3790 4.262592 GGTAGGTTCTTAAACTGGACGGAA 60.263 45.833 0.00 0.00 35.61 4.30
3181 3791 3.259123 GGTAGGTTCTTAAACTGGACGGA 59.741 47.826 0.00 0.00 35.61 4.69
3182 3792 3.260128 AGGTAGGTTCTTAAACTGGACGG 59.740 47.826 0.00 0.00 35.61 4.79
3183 3793 4.532314 AGGTAGGTTCTTAAACTGGACG 57.468 45.455 0.00 0.00 35.61 4.79
3184 3794 4.454847 GCAAGGTAGGTTCTTAAACTGGAC 59.545 45.833 0.00 0.00 35.61 4.02
3185 3795 4.648651 GCAAGGTAGGTTCTTAAACTGGA 58.351 43.478 0.00 0.00 35.61 3.86
3186 3796 3.435671 CGCAAGGTAGGTTCTTAAACTGG 59.564 47.826 0.00 0.00 35.61 4.00
3187 3797 4.062991 ACGCAAGGTAGGTTCTTAAACTG 58.937 43.478 0.00 0.00 46.39 3.16
3188 3798 4.347360 ACGCAAGGTAGGTTCTTAAACT 57.653 40.909 0.00 0.00 46.39 2.66
3189 3799 5.428496 AAACGCAAGGTAGGTTCTTAAAC 57.572 39.130 0.00 0.00 46.39 2.01
3190 3800 6.453926 AAAAACGCAAGGTAGGTTCTTAAA 57.546 33.333 0.00 0.00 46.39 1.52
3213 3823 5.683743 CCGATAAGAAACGCACAAAGAAAAA 59.316 36.000 0.00 0.00 0.00 1.94
3214 3824 5.209240 CCGATAAGAAACGCACAAAGAAAA 58.791 37.500 0.00 0.00 0.00 2.29
3215 3825 4.778904 CCGATAAGAAACGCACAAAGAAA 58.221 39.130 0.00 0.00 0.00 2.52
3216 3826 3.364565 GCCGATAAGAAACGCACAAAGAA 60.365 43.478 0.00 0.00 0.00 2.52
3217 3827 2.158841 GCCGATAAGAAACGCACAAAGA 59.841 45.455 0.00 0.00 0.00 2.52
3218 3828 2.505866 GCCGATAAGAAACGCACAAAG 58.494 47.619 0.00 0.00 0.00 2.77
3219 3829 2.604969 GCCGATAAGAAACGCACAAA 57.395 45.000 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.