Multiple sequence alignment - TraesCS5B01G459000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G459000 chr5B 100.000 3304 0 0 1 3304 634980558 634983861 0.000000e+00 6102.0
1 TraesCS5B01G459000 chr5D 88.947 3049 161 63 3 2968 505122765 505125720 0.000000e+00 3602.0
2 TraesCS5B01G459000 chr5D 86.682 856 56 27 2407 3243 29466118 29466934 0.000000e+00 896.0
3 TraesCS5B01G459000 chr5D 93.373 498 24 5 2448 2945 447516202 447515714 0.000000e+00 728.0
4 TraesCS5B01G459000 chr5D 85.959 292 22 8 3027 3304 505125751 505126037 8.970000e-76 294.0
5 TraesCS5B01G459000 chr5A 86.532 3423 203 97 3 3304 632662838 632666123 0.000000e+00 3530.0
6 TraesCS5B01G459000 chr5A 82.979 94 8 3 1408 1493 623644238 623644331 9.830000e-11 78.7
7 TraesCS5B01G459000 chr1D 87.150 856 53 25 2407 3243 288277481 288278298 0.000000e+00 918.0
8 TraesCS5B01G459000 chr3D 86.565 856 59 25 2407 3243 47562871 47563689 0.000000e+00 893.0
9 TraesCS5B01G459000 chr3D 93.200 500 22 6 2448 2945 562942014 562941525 0.000000e+00 725.0
10 TraesCS5B01G459000 chr3D 82.100 419 37 21 2904 3304 381492089 381492487 1.140000e-84 324.0
11 TraesCS5B01G459000 chr3D 82.039 412 41 22 2904 3300 313254610 313255003 1.480000e-83 320.0
12 TraesCS5B01G459000 chr7D 86.411 861 56 29 2407 3246 577029774 577028954 0.000000e+00 885.0
13 TraesCS5B01G459000 chr7D 92.227 476 22 7 2470 2945 28303999 28303539 0.000000e+00 660.0
14 TraesCS5B01G459000 chr7D 89.474 57 6 0 1437 1493 514909758 514909702 4.570000e-09 73.1
15 TraesCS5B01G459000 chr6D 86.060 868 60 34 2394 3243 227946485 227947309 0.000000e+00 876.0
16 TraesCS5B01G459000 chr7A 86.478 636 47 22 2687 3304 360266678 360267292 0.000000e+00 662.0
17 TraesCS5B01G459000 chr6A 86.371 609 44 21 2709 3299 290275034 290275621 2.160000e-176 628.0
18 TraesCS5B01G459000 chr6A 91.228 57 5 0 1437 1493 392215239 392215183 9.830000e-11 78.7
19 TraesCS5B01G459000 chr2A 82.751 458 40 23 2866 3304 405140666 405141103 4.030000e-99 372.0
20 TraesCS5B01G459000 chr2A 82.096 458 43 23 2866 3304 396000683 396000246 4.060000e-94 355.0
21 TraesCS5B01G459000 chr2A 84.868 304 27 13 1203 1493 775611482 775611185 4.170000e-74 289.0
22 TraesCS5B01G459000 chr2D 83.055 419 34 19 2904 3304 121235066 121235465 2.440000e-91 346.0
23 TraesCS5B01G459000 chr2D 79.916 239 21 11 3024 3246 58371020 58370793 2.050000e-32 150.0
24 TraesCS5B01G459000 chr6B 84.488 303 30 11 1203 1493 497825513 497825216 1.940000e-72 283.0
25 TraesCS5B01G459000 chr6B 82.422 256 28 11 1250 1493 103157891 103157641 1.200000e-49 207.0
26 TraesCS5B01G459000 chr4B 84.539 304 28 13 1203 1493 624392984 624393281 1.940000e-72 283.0
27 TraesCS5B01G459000 chr2B 84.281 299 34 11 1203 1493 136271142 136270849 2.510000e-71 279.0
28 TraesCS5B01G459000 chrUn 84.615 286 25 13 1203 1475 478759970 478760249 1.950000e-67 267.0
29 TraesCS5B01G459000 chr4D 83.810 105 11 6 3051 3152 271905003 271904902 9.760000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G459000 chr5B 634980558 634983861 3303 False 6102 6102 100.000 1 3304 1 chr5B.!!$F1 3303
1 TraesCS5B01G459000 chr5D 505122765 505126037 3272 False 1948 3602 87.453 3 3304 2 chr5D.!!$F2 3301
2 TraesCS5B01G459000 chr5D 29466118 29466934 816 False 896 896 86.682 2407 3243 1 chr5D.!!$F1 836
3 TraesCS5B01G459000 chr5A 632662838 632666123 3285 False 3530 3530 86.532 3 3304 1 chr5A.!!$F2 3301
4 TraesCS5B01G459000 chr1D 288277481 288278298 817 False 918 918 87.150 2407 3243 1 chr1D.!!$F1 836
5 TraesCS5B01G459000 chr3D 47562871 47563689 818 False 893 893 86.565 2407 3243 1 chr3D.!!$F1 836
6 TraesCS5B01G459000 chr7D 577028954 577029774 820 True 885 885 86.411 2407 3246 1 chr7D.!!$R3 839
7 TraesCS5B01G459000 chr6D 227946485 227947309 824 False 876 876 86.060 2394 3243 1 chr6D.!!$F1 849
8 TraesCS5B01G459000 chr7A 360266678 360267292 614 False 662 662 86.478 2687 3304 1 chr7A.!!$F1 617
9 TraesCS5B01G459000 chr6A 290275034 290275621 587 False 628 628 86.371 2709 3299 1 chr6A.!!$F1 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 378 0.108585 CCTCCCGAGAGAGAGAGAGG 59.891 65.0 0.00 0.0 43.39 3.69 F
525 559 0.894141 CACTCCCTCTCACTCACTGG 59.106 60.0 0.00 0.0 0.00 4.00 F
1564 1685 0.548989 TTGCACAGTGGGGTAACAGT 59.451 50.0 1.84 0.0 39.74 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1509 1622 0.033601 TGGCACACCTCAAACCAACT 60.034 50.000 0.0 0.0 36.63 3.16 R
2221 2352 0.548510 GAGGGTGATGAAGGAAGGGG 59.451 60.000 0.0 0.0 0.00 4.79 R
2900 3071 1.064389 AGTAAAGCAAGATGGGGAGCC 60.064 52.381 0.0 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.862090 GCAAAATATTCTGAGATCAATGAGCC 59.138 38.462 0.00 0.00 0.00 4.70
36 37 4.412796 TTCTGAGATCAATGAGCCGATT 57.587 40.909 0.00 0.00 0.00 3.34
117 131 1.495584 CGCATTGTAATCCGGACCCG 61.496 60.000 6.12 0.66 39.44 5.28
189 204 1.896660 GGGCGCTGTTCACTTTGGA 60.897 57.895 7.64 0.00 0.00 3.53
199 214 3.181487 TGTTCACTTTGGAGCTTGCTTTC 60.181 43.478 0.00 0.00 0.00 2.62
200 215 1.603802 TCACTTTGGAGCTTGCTTTCG 59.396 47.619 0.00 0.00 0.00 3.46
201 216 0.954452 ACTTTGGAGCTTGCTTTCGG 59.046 50.000 0.00 0.00 0.00 4.30
202 217 0.242017 CTTTGGAGCTTGCTTTCGGG 59.758 55.000 0.00 0.00 0.00 5.14
203 218 1.805428 TTTGGAGCTTGCTTTCGGGC 61.805 55.000 0.00 0.00 0.00 6.13
204 219 3.443925 GGAGCTTGCTTTCGGGCC 61.444 66.667 0.00 0.00 0.00 5.80
205 220 2.360475 GAGCTTGCTTTCGGGCCT 60.360 61.111 0.84 0.00 0.00 5.19
206 221 2.360475 AGCTTGCTTTCGGGCCTC 60.360 61.111 0.84 0.00 0.00 4.70
207 222 3.443925 GCTTGCTTTCGGGCCTCC 61.444 66.667 0.84 0.00 0.00 4.30
208 223 2.352805 CTTGCTTTCGGGCCTCCT 59.647 61.111 0.84 0.00 0.00 3.69
209 224 1.746991 CTTGCTTTCGGGCCTCCTC 60.747 63.158 0.84 0.00 0.00 3.71
210 225 3.605749 TTGCTTTCGGGCCTCCTCG 62.606 63.158 0.84 0.00 0.00 4.63
223 238 1.987704 CTCCTCGCCTCACTCACTCG 61.988 65.000 0.00 0.00 0.00 4.18
253 268 4.944069 CCCCGCCCTCTCCCCTAG 62.944 77.778 0.00 0.00 0.00 3.02
254 269 4.159108 CCCGCCCTCTCCCCTAGT 62.159 72.222 0.00 0.00 0.00 2.57
255 270 2.522193 CCGCCCTCTCCCCTAGTC 60.522 72.222 0.00 0.00 0.00 2.59
313 328 1.577328 GCCACCCACACGACAAGATG 61.577 60.000 0.00 0.00 0.00 2.90
314 329 1.577328 CCACCCACACGACAAGATGC 61.577 60.000 0.00 0.00 0.00 3.91
315 330 0.884259 CACCCACACGACAAGATGCA 60.884 55.000 0.00 0.00 0.00 3.96
316 331 0.179032 ACCCACACGACAAGATGCAA 60.179 50.000 0.00 0.00 0.00 4.08
317 332 0.238289 CCCACACGACAAGATGCAAC 59.762 55.000 0.00 0.00 0.00 4.17
343 358 1.746787 CCGGAAATTTTTACCCCTCCG 59.253 52.381 0.00 4.34 44.21 4.63
344 359 1.133598 CGGAAATTTTTACCCCTCCGC 59.866 52.381 0.00 0.00 39.36 5.54
345 360 1.479323 GGAAATTTTTACCCCTCCGCC 59.521 52.381 0.00 0.00 0.00 6.13
346 361 2.453521 GAAATTTTTACCCCTCCGCCT 58.546 47.619 0.00 0.00 0.00 5.52
347 362 2.139323 AATTTTTACCCCTCCGCCTC 57.861 50.000 0.00 0.00 0.00 4.70
348 363 0.257905 ATTTTTACCCCTCCGCCTCC 59.742 55.000 0.00 0.00 0.00 4.30
349 364 1.855441 TTTTTACCCCTCCGCCTCCC 61.855 60.000 0.00 0.00 0.00 4.30
355 370 4.507916 CCTCCGCCTCCCGAGAGA 62.508 72.222 0.00 0.00 43.39 3.10
356 371 2.904866 CTCCGCCTCCCGAGAGAG 60.905 72.222 0.00 0.00 43.39 3.20
357 372 3.408099 CTCCGCCTCCCGAGAGAGA 62.408 68.421 0.00 0.00 43.39 3.10
363 378 0.108585 CCTCCCGAGAGAGAGAGAGG 59.891 65.000 0.00 0.00 43.39 3.69
511 545 8.358895 ACTACTACAACTTTACTTTCTCACTCC 58.641 37.037 0.00 0.00 0.00 3.85
513 547 5.632034 ACAACTTTACTTTCTCACTCCCT 57.368 39.130 0.00 0.00 0.00 4.20
517 551 5.148502 ACTTTACTTTCTCACTCCCTCTCA 58.851 41.667 0.00 0.00 0.00 3.27
524 558 1.818060 CTCACTCCCTCTCACTCACTG 59.182 57.143 0.00 0.00 0.00 3.66
525 559 0.894141 CACTCCCTCTCACTCACTGG 59.106 60.000 0.00 0.00 0.00 4.00
526 560 0.902516 ACTCCCTCTCACTCACTGGC 60.903 60.000 0.00 0.00 0.00 4.85
527 561 1.610673 TCCCTCTCACTCACTGGCC 60.611 63.158 0.00 0.00 0.00 5.36
673 722 3.214123 CATGGCCATGGGTCGCTG 61.214 66.667 34.31 11.13 35.24 5.18
674 723 4.511246 ATGGCCATGGGTCGCTGG 62.511 66.667 20.04 0.00 35.53 4.85
751 813 2.226437 TCAGGCTAAAGCAAAAGAAGCG 59.774 45.455 4.07 0.00 44.36 4.68
770 832 2.541588 GCGCAGAAGAAAACAAGAAGCA 60.542 45.455 0.30 0.00 0.00 3.91
968 1051 0.996762 GAGGAGAGGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
973 1063 4.144727 GGGAGGAGGAGGAGGCGA 62.145 72.222 0.00 0.00 0.00 5.54
1271 1367 5.704515 GGTACTTCACCTTACCTTTTTCTCC 59.295 44.000 0.00 0.00 44.79 3.71
1273 1369 2.774687 TCACCTTACCTTTTTCTCCGC 58.225 47.619 0.00 0.00 0.00 5.54
1305 1401 5.217978 TGCAAGATTGGCTCTGAATTTTT 57.782 34.783 0.00 0.00 33.29 1.94
1306 1402 4.992319 TGCAAGATTGGCTCTGAATTTTTG 59.008 37.500 0.00 0.00 33.29 2.44
1314 1410 2.673326 GCTCTGAATTTTTGGAGCTGGC 60.673 50.000 0.00 0.00 45.15 4.85
1315 1411 2.824341 CTCTGAATTTTTGGAGCTGGCT 59.176 45.455 0.00 0.00 0.00 4.75
1316 1412 2.821969 TCTGAATTTTTGGAGCTGGCTC 59.178 45.455 13.56 13.56 42.04 4.70
1326 1422 2.470983 GAGCTGGCTCCATCCTATTC 57.529 55.000 11.14 0.00 37.11 1.75
1327 1423 1.977129 GAGCTGGCTCCATCCTATTCT 59.023 52.381 11.14 0.00 37.11 2.40
1328 1424 2.371510 GAGCTGGCTCCATCCTATTCTT 59.628 50.000 11.14 0.00 37.11 2.52
1329 1425 2.782341 AGCTGGCTCCATCCTATTCTTT 59.218 45.455 0.00 0.00 0.00 2.52
1330 1426 3.145286 GCTGGCTCCATCCTATTCTTTC 58.855 50.000 0.00 0.00 0.00 2.62
1333 1429 5.444176 CTGGCTCCATCCTATTCTTTCTTT 58.556 41.667 0.00 0.00 0.00 2.52
1343 1447 5.426833 TCCTATTCTTTCTTTCCCTCCTCTG 59.573 44.000 0.00 0.00 0.00 3.35
1345 1449 5.590976 ATTCTTTCTTTCCCTCCTCTGTT 57.409 39.130 0.00 0.00 0.00 3.16
1357 1461 4.144297 CCTCCTCTGTTTGTTCATCCAAA 58.856 43.478 0.00 0.00 32.12 3.28
1374 1478 7.970384 TCATCCAAATTCAGTTCGTATGTTAC 58.030 34.615 0.00 0.00 0.00 2.50
1402 1506 3.763897 GAGTCATGTGGCCCTGTAAAATT 59.236 43.478 0.00 0.00 0.00 1.82
1407 1511 2.224161 TGTGGCCCTGTAAAATTTGCAC 60.224 45.455 0.00 0.00 0.00 4.57
1410 1514 3.002102 GGCCCTGTAAAATTTGCACATG 58.998 45.455 0.00 0.00 0.00 3.21
1411 1515 3.306641 GGCCCTGTAAAATTTGCACATGA 60.307 43.478 0.00 0.00 0.00 3.07
1414 1520 5.412286 GCCCTGTAAAATTTGCACATGATTT 59.588 36.000 0.00 0.00 0.00 2.17
1416 1522 6.128227 CCCTGTAAAATTTGCACATGATTTGG 60.128 38.462 0.00 4.13 0.00 3.28
1417 1523 6.238610 TGTAAAATTTGCACATGATTTGGC 57.761 33.333 0.00 0.00 0.00 4.52
1434 1540 7.274447 TGATTTGGCAATCAGAAAAGAAGTTT 58.726 30.769 0.00 0.00 43.32 2.66
1435 1541 6.907206 TTTGGCAATCAGAAAAGAAGTTTG 57.093 33.333 0.00 0.00 0.00 2.93
1436 1542 5.850557 TGGCAATCAGAAAAGAAGTTTGA 57.149 34.783 0.00 0.00 0.00 2.69
1447 1560 4.525912 AAGAAGTTTGATGGCCATGAAC 57.474 40.909 26.56 25.11 0.00 3.18
1448 1561 3.771216 AGAAGTTTGATGGCCATGAACT 58.229 40.909 26.56 26.82 32.33 3.01
1472 1585 7.610305 ACTTTGTCTAGGTTTCTTGAAGTTTGA 59.390 33.333 0.00 0.00 0.00 2.69
1474 1587 9.621629 TTTGTCTAGGTTTCTTGAAGTTTGATA 57.378 29.630 0.00 0.00 0.00 2.15
1481 1594 7.556275 AGGTTTCTTGAAGTTTGATACTGTTGA 59.444 33.333 0.00 0.00 37.12 3.18
1509 1622 7.561251 TGAAATCTGAAGATGTTATCCGGTTA 58.439 34.615 0.00 0.00 34.49 2.85
1516 1629 5.431179 AGATGTTATCCGGTTAGTTGGTT 57.569 39.130 0.00 0.00 0.00 3.67
1564 1685 0.548989 TTGCACAGTGGGGTAACAGT 59.451 50.000 1.84 0.00 39.74 3.55
1567 1688 1.878102 GCACAGTGGGGTAACAGTCTG 60.878 57.143 1.84 0.00 39.74 3.51
1571 1692 3.260884 ACAGTGGGGTAACAGTCTGTATG 59.739 47.826 5.77 0.00 39.15 2.39
1577 1698 5.116882 GGGGTAACAGTCTGTATGCTAAAG 58.883 45.833 5.77 0.00 39.74 1.85
1578 1699 5.105064 GGGGTAACAGTCTGTATGCTAAAGA 60.105 44.000 5.77 0.00 39.74 2.52
1607 1729 6.928492 TGACCAAATTTGAAATAAAGCACTCC 59.072 34.615 19.86 0.00 0.00 3.85
1639 1761 4.702131 GTGATGGCTCTTTACCAAGAACAT 59.298 41.667 0.00 2.95 41.49 2.71
1693 1815 9.555727 GCCATGAAATAGGTCTAGTGTTTAATA 57.444 33.333 0.00 0.00 0.00 0.98
1724 1846 4.888239 TGATAGGCTACACTAGTTCACTCC 59.112 45.833 0.00 0.00 0.00 3.85
1760 1883 9.286946 CATATGCTCTGTTTTCTGAATTTTCTC 57.713 33.333 0.00 0.00 0.00 2.87
1788 1911 8.976353 TGCTGGGCAAAAAGAGAAATATATAAA 58.024 29.630 0.00 0.00 34.76 1.40
1845 1968 3.761897 TGTTTGACCATAAAGGGGTGAG 58.238 45.455 0.00 0.00 43.89 3.51
1966 2091 5.188327 TGATATTTTTGTTGTTGTCGCCA 57.812 34.783 0.00 0.00 0.00 5.69
2131 2256 3.163630 TGAAAGCAGTCAAACAAAGCC 57.836 42.857 0.00 0.00 0.00 4.35
2132 2257 2.159114 TGAAAGCAGTCAAACAAAGCCC 60.159 45.455 0.00 0.00 0.00 5.19
2133 2258 1.780503 AAGCAGTCAAACAAAGCCCT 58.219 45.000 0.00 0.00 0.00 5.19
2212 2343 2.361757 TGAAACACAGACTGCCAAATGG 59.638 45.455 1.25 0.00 38.53 3.16
2228 2359 2.035783 GGTGCTCCAACCCCTTCC 59.964 66.667 0.00 0.00 33.79 3.46
2229 2360 2.539081 GGTGCTCCAACCCCTTCCT 61.539 63.158 0.00 0.00 33.79 3.36
2230 2361 1.460699 GTGCTCCAACCCCTTCCTT 59.539 57.895 0.00 0.00 0.00 3.36
2231 2362 0.609406 GTGCTCCAACCCCTTCCTTC 60.609 60.000 0.00 0.00 0.00 3.46
2363 2494 3.391296 GGTTATGTTGGGGCAGAGAGATA 59.609 47.826 0.00 0.00 0.00 1.98
2365 2496 2.254152 TGTTGGGGCAGAGAGATAGT 57.746 50.000 0.00 0.00 0.00 2.12
2366 2497 1.833630 TGTTGGGGCAGAGAGATAGTG 59.166 52.381 0.00 0.00 0.00 2.74
2367 2498 2.111384 GTTGGGGCAGAGAGATAGTGA 58.889 52.381 0.00 0.00 0.00 3.41
2368 2499 2.501723 GTTGGGGCAGAGAGATAGTGAA 59.498 50.000 0.00 0.00 0.00 3.18
2369 2500 3.051940 TGGGGCAGAGAGATAGTGAAT 57.948 47.619 0.00 0.00 0.00 2.57
2370 2501 3.387962 TGGGGCAGAGAGATAGTGAATT 58.612 45.455 0.00 0.00 0.00 2.17
2371 2502 3.135348 TGGGGCAGAGAGATAGTGAATTG 59.865 47.826 0.00 0.00 0.00 2.32
2372 2503 3.137533 GGGCAGAGAGATAGTGAATTGC 58.862 50.000 0.00 0.00 0.00 3.56
2373 2504 3.432749 GGGCAGAGAGATAGTGAATTGCA 60.433 47.826 0.00 0.00 32.24 4.08
2374 2505 4.387598 GGCAGAGAGATAGTGAATTGCAT 58.612 43.478 0.00 0.00 32.24 3.96
2398 2529 4.337274 TGCATTGCATTGTATCTCCTGAAG 59.663 41.667 7.38 0.00 31.71 3.02
2567 2710 1.597937 GCGAAAACAGAGGCTGTGTTG 60.598 52.381 27.99 17.57 44.62 3.33
2746 2896 1.691434 TGGTTTTGATGCCCACTTTCC 59.309 47.619 0.00 0.00 0.00 3.13
2877 3040 5.249780 TCTCACCTAATAAAGCAACCCAA 57.750 39.130 0.00 0.00 0.00 4.12
2918 3089 0.107214 CGGCTCCCCATCTTGCTTTA 60.107 55.000 0.00 0.00 0.00 1.85
2920 3091 1.064389 GGCTCCCCATCTTGCTTTACT 60.064 52.381 0.00 0.00 0.00 2.24
2945 3120 4.943705 AGCCTATTGTACATGTCCACTTTG 59.056 41.667 0.00 0.00 0.00 2.77
2968 3143 9.686683 TTTGTTCCCTCCAAAATTTCAAAATTA 57.313 25.926 1.36 0.00 37.62 1.40
2969 3144 9.859152 TTGTTCCCTCCAAAATTTCAAAATTAT 57.141 25.926 1.36 0.00 37.62 1.28
2987 3162 8.992835 AAAATTATTTGAGGTTTCTCTGATGC 57.007 30.769 0.00 0.00 40.58 3.91
2988 3163 6.705863 ATTATTTGAGGTTTCTCTGATGCC 57.294 37.500 0.00 0.00 40.58 4.40
2989 3164 2.496899 TTGAGGTTTCTCTGATGCCC 57.503 50.000 0.00 0.00 40.58 5.36
2992 3167 2.309755 TGAGGTTTCTCTGATGCCCATT 59.690 45.455 0.00 0.00 40.58 3.16
2994 3169 2.579860 AGGTTTCTCTGATGCCCATTCT 59.420 45.455 0.00 0.00 0.00 2.40
2995 3170 2.686915 GGTTTCTCTGATGCCCATTCTG 59.313 50.000 0.00 0.00 0.00 3.02
2996 3171 2.686915 GTTTCTCTGATGCCCATTCTGG 59.313 50.000 0.00 0.00 37.25 3.86
3013 3188 3.356814 GGCTTTGCCTTAGACCCAA 57.643 52.632 0.73 0.00 46.69 4.12
3014 3189 1.627864 GGCTTTGCCTTAGACCCAAA 58.372 50.000 0.73 0.00 46.69 3.28
3015 3190 2.179427 GGCTTTGCCTTAGACCCAAAT 58.821 47.619 0.73 0.00 46.69 2.32
3016 3191 2.567169 GGCTTTGCCTTAGACCCAAATT 59.433 45.455 0.73 0.00 46.69 1.82
3017 3192 3.767131 GGCTTTGCCTTAGACCCAAATTA 59.233 43.478 0.73 0.00 46.69 1.40
3018 3193 4.221924 GGCTTTGCCTTAGACCCAAATTAA 59.778 41.667 0.73 0.00 46.69 1.40
3019 3194 5.279758 GGCTTTGCCTTAGACCCAAATTAAA 60.280 40.000 0.73 0.00 46.69 1.52
3020 3195 6.406370 GCTTTGCCTTAGACCCAAATTAAAT 58.594 36.000 0.00 0.00 0.00 1.40
3021 3196 7.364320 GGCTTTGCCTTAGACCCAAATTAAATA 60.364 37.037 0.73 0.00 46.69 1.40
3022 3197 8.038351 GCTTTGCCTTAGACCCAAATTAAATAA 58.962 33.333 0.00 0.00 0.00 1.40
3023 3198 9.936759 CTTTGCCTTAGACCCAAATTAAATAAA 57.063 29.630 0.00 0.00 0.00 1.40
3049 3238 3.058777 GCATTCAACATGGCACCAAAAAG 60.059 43.478 0.00 0.00 0.00 2.27
3050 3239 4.378774 CATTCAACATGGCACCAAAAAGA 58.621 39.130 0.00 0.00 0.00 2.52
3052 3241 4.057406 TCAACATGGCACCAAAAAGAAG 57.943 40.909 0.00 0.00 0.00 2.85
3053 3242 3.703556 TCAACATGGCACCAAAAAGAAGA 59.296 39.130 0.00 0.00 0.00 2.87
3056 3245 5.096443 ACATGGCACCAAAAAGAAGAAAA 57.904 34.783 0.00 0.00 0.00 2.29
3064 3253 7.812191 GGCACCAAAAAGAAGAAAACAATTTTT 59.188 29.630 0.00 0.00 37.65 1.94
3082 3272 8.174422 ACAATTTTTCCATGAACGAAAACAAAG 58.826 29.630 7.58 3.17 38.57 2.77
3236 3450 5.725362 AGCTTAGTAGTAGCTTTGAACAGG 58.275 41.667 0.00 0.00 46.42 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.761504 TTGATCTCAGAATATTTTGCAACAAAA 57.238 25.926 0.00 7.84 0.00 2.44
1 2 9.932207 ATTGATCTCAGAATATTTTGCAACAAA 57.068 25.926 0.00 0.00 0.00 2.83
21 22 2.032054 TGCGAAAATCGGCTCATTGATC 59.968 45.455 1.64 0.00 40.84 2.92
23 24 1.447945 TGCGAAAATCGGCTCATTGA 58.552 45.000 1.64 0.00 40.84 2.57
32 33 0.944386 CCCCCTACATGCGAAAATCG 59.056 55.000 0.00 0.00 43.89 3.34
189 204 2.360475 GAGGCCCGAAAGCAAGCT 60.360 61.111 0.00 0.00 0.00 3.74
203 218 1.662438 GAGTGAGTGAGGCGAGGAGG 61.662 65.000 0.00 0.00 0.00 4.30
204 219 1.806568 GAGTGAGTGAGGCGAGGAG 59.193 63.158 0.00 0.00 0.00 3.69
205 220 2.041115 CGAGTGAGTGAGGCGAGGA 61.041 63.158 0.00 0.00 0.00 3.71
206 221 2.487428 CGAGTGAGTGAGGCGAGG 59.513 66.667 0.00 0.00 0.00 4.63
207 222 2.202544 GCGAGTGAGTGAGGCGAG 60.203 66.667 0.00 0.00 0.00 5.03
208 223 1.806461 AAAGCGAGTGAGTGAGGCGA 61.806 55.000 0.00 0.00 0.00 5.54
209 224 0.946221 AAAAGCGAGTGAGTGAGGCG 60.946 55.000 0.00 0.00 0.00 5.52
210 225 1.727335 GTAAAAGCGAGTGAGTGAGGC 59.273 52.381 0.00 0.00 0.00 4.70
211 226 2.288825 TGGTAAAAGCGAGTGAGTGAGG 60.289 50.000 0.00 0.00 0.00 3.86
212 227 3.026630 TGGTAAAAGCGAGTGAGTGAG 57.973 47.619 0.00 0.00 0.00 3.51
213 228 3.325870 CATGGTAAAAGCGAGTGAGTGA 58.674 45.455 0.00 0.00 0.00 3.41
214 229 2.159653 GCATGGTAAAAGCGAGTGAGTG 60.160 50.000 0.00 0.00 0.00 3.51
215 230 2.076863 GCATGGTAAAAGCGAGTGAGT 58.923 47.619 0.00 0.00 0.00 3.41
223 238 3.076258 GCGGGGGCATGGTAAAAGC 62.076 63.158 0.00 0.00 0.00 3.51
253 268 3.604875 TCATCTTTGGGGTAACTCGAC 57.395 47.619 0.00 0.00 44.09 4.20
254 269 4.627284 TTTCATCTTTGGGGTAACTCGA 57.373 40.909 0.00 0.00 44.09 4.04
255 270 5.648092 AGAATTTCATCTTTGGGGTAACTCG 59.352 40.000 0.00 0.00 44.09 4.18
313 328 2.763627 AAATTTCCGGGCTGCGTTGC 62.764 55.000 0.00 0.00 0.00 4.17
314 329 0.319469 AAAATTTCCGGGCTGCGTTG 60.319 50.000 0.00 0.00 0.00 4.10
315 330 0.391228 AAAAATTTCCGGGCTGCGTT 59.609 45.000 0.00 0.00 0.00 4.84
316 331 1.068125 GTAAAAATTTCCGGGCTGCGT 60.068 47.619 0.00 0.00 0.00 5.24
317 332 1.624487 GTAAAAATTTCCGGGCTGCG 58.376 50.000 0.00 0.00 0.00 5.18
343 358 0.535102 CTCTCTCTCTCTCGGGAGGC 60.535 65.000 13.54 0.00 39.86 4.70
344 359 0.108585 CCTCTCTCTCTCTCGGGAGG 59.891 65.000 13.54 3.25 39.86 4.30
345 360 0.108585 CCCTCTCTCTCTCTCGGGAG 59.891 65.000 5.75 5.75 40.73 4.30
346 361 0.326713 TCCCTCTCTCTCTCTCGGGA 60.327 60.000 0.00 0.00 38.33 5.14
347 362 0.108585 CTCCCTCTCTCTCTCTCGGG 59.891 65.000 0.00 0.00 0.00 5.14
348 363 0.108585 CCTCCCTCTCTCTCTCTCGG 59.891 65.000 0.00 0.00 0.00 4.63
349 364 0.108585 CCCTCCCTCTCTCTCTCTCG 59.891 65.000 0.00 0.00 0.00 4.04
350 365 1.518367 TCCCTCCCTCTCTCTCTCTC 58.482 60.000 0.00 0.00 0.00 3.20
351 366 1.994399 TTCCCTCCCTCTCTCTCTCT 58.006 55.000 0.00 0.00 0.00 3.10
352 367 2.447047 AGATTCCCTCCCTCTCTCTCTC 59.553 54.545 0.00 0.00 0.00 3.20
353 368 2.513602 AGATTCCCTCCCTCTCTCTCT 58.486 52.381 0.00 0.00 0.00 3.10
354 369 3.139397 TGTAGATTCCCTCCCTCTCTCTC 59.861 52.174 0.00 0.00 0.00 3.20
355 370 3.135279 TGTAGATTCCCTCCCTCTCTCT 58.865 50.000 0.00 0.00 0.00 3.10
356 371 3.603965 TGTAGATTCCCTCCCTCTCTC 57.396 52.381 0.00 0.00 0.00 3.20
357 372 3.732204 AGATGTAGATTCCCTCCCTCTCT 59.268 47.826 0.00 0.00 0.00 3.10
363 378 4.156373 GCTACGTAGATGTAGATTCCCTCC 59.844 50.000 26.53 0.00 43.65 4.30
404 419 5.292345 GCTCCGTCTTTATTTCTCCTCTTTC 59.708 44.000 0.00 0.00 0.00 2.62
412 428 2.380084 TGCGCTCCGTCTTTATTTCT 57.620 45.000 9.73 0.00 0.00 2.52
413 429 2.415512 ACTTGCGCTCCGTCTTTATTTC 59.584 45.455 9.73 0.00 0.00 2.17
485 501 8.358895 GGAGTGAGAAAGTAAAGTTGTAGTAGT 58.641 37.037 0.00 0.00 0.00 2.73
486 502 7.813627 GGGAGTGAGAAAGTAAAGTTGTAGTAG 59.186 40.741 0.00 0.00 0.00 2.57
487 503 7.508296 AGGGAGTGAGAAAGTAAAGTTGTAGTA 59.492 37.037 0.00 0.00 0.00 1.82
488 504 6.326843 AGGGAGTGAGAAAGTAAAGTTGTAGT 59.673 38.462 0.00 0.00 0.00 2.73
489 505 6.760291 AGGGAGTGAGAAAGTAAAGTTGTAG 58.240 40.000 0.00 0.00 0.00 2.74
490 506 6.553852 AGAGGGAGTGAGAAAGTAAAGTTGTA 59.446 38.462 0.00 0.00 0.00 2.41
511 545 2.219325 GACGGCCAGTGAGTGAGAGG 62.219 65.000 2.24 0.00 0.00 3.69
513 547 0.827925 AAGACGGCCAGTGAGTGAGA 60.828 55.000 2.24 0.00 0.00 3.27
517 551 3.800826 AAAAAGACGGCCAGTGAGT 57.199 47.368 2.24 0.00 0.00 3.41
604 641 3.830192 CATGGCGCCCCTGCTTTC 61.830 66.667 26.77 0.00 34.43 2.62
634 683 0.710017 CGCTTTTCTTTTGGCATCGC 59.290 50.000 0.00 0.00 0.00 4.58
635 684 1.339711 CCGCTTTTCTTTTGGCATCG 58.660 50.000 0.00 0.00 0.00 3.84
636 685 1.713597 CCCGCTTTTCTTTTGGCATC 58.286 50.000 0.00 0.00 0.00 3.91
637 686 0.320683 GCCCGCTTTTCTTTTGGCAT 60.321 50.000 0.00 0.00 38.73 4.40
638 687 1.068921 GCCCGCTTTTCTTTTGGCA 59.931 52.632 0.00 0.00 38.73 4.92
639 688 0.320683 ATGCCCGCTTTTCTTTTGGC 60.321 50.000 0.00 0.00 39.33 4.52
640 689 1.431496 CATGCCCGCTTTTCTTTTGG 58.569 50.000 0.00 0.00 0.00 3.28
675 724 3.130160 GAGGAGCGCCAAAGCAGG 61.130 66.667 9.88 0.00 39.83 4.85
676 725 3.494336 CGAGGAGCGCCAAAGCAG 61.494 66.667 9.88 0.00 39.83 4.24
751 813 3.316308 TCCTGCTTCTTGTTTTCTTCTGC 59.684 43.478 0.00 0.00 0.00 4.26
770 832 1.108776 TTGCGAGCGGTAGTATTCCT 58.891 50.000 0.00 0.00 0.00 3.36
937 999 2.125512 CTCCTCTGTTTCCGGCGG 60.126 66.667 22.51 22.51 0.00 6.13
942 1004 1.199615 CCTCCCTCTCCTCTGTTTCC 58.800 60.000 0.00 0.00 0.00 3.13
984 1074 0.322456 TCATAGCACCACCAACCAGC 60.322 55.000 0.00 0.00 0.00 4.85
1053 1149 2.032924 CGACACCAAAACAAGAACTCCC 59.967 50.000 0.00 0.00 0.00 4.30
1140 1236 2.841988 GCCTCTCCTCCATCGCCT 60.842 66.667 0.00 0.00 0.00 5.52
1146 1242 2.366167 CTCCTGGCCTCTCCTCCA 59.634 66.667 3.32 0.00 35.26 3.86
1174 1270 1.523032 GATCGTCGGCCCGGAAATT 60.523 57.895 0.73 0.00 0.00 1.82
1259 1355 2.409975 CAACGAGCGGAGAAAAAGGTA 58.590 47.619 0.00 0.00 0.00 3.08
1273 1369 2.256174 CCAATCTTGCAATGCAACGAG 58.744 47.619 17.55 7.86 43.99 4.18
1314 1410 6.259346 AGGGAAAGAAAGAATAGGATGGAG 57.741 41.667 0.00 0.00 0.00 3.86
1315 1411 5.132816 GGAGGGAAAGAAAGAATAGGATGGA 59.867 44.000 0.00 0.00 0.00 3.41
1316 1412 5.133491 AGGAGGGAAAGAAAGAATAGGATGG 59.867 44.000 0.00 0.00 0.00 3.51
1317 1413 6.101005 AGAGGAGGGAAAGAAAGAATAGGATG 59.899 42.308 0.00 0.00 0.00 3.51
1318 1414 6.101005 CAGAGGAGGGAAAGAAAGAATAGGAT 59.899 42.308 0.00 0.00 0.00 3.24
1319 1415 5.426833 CAGAGGAGGGAAAGAAAGAATAGGA 59.573 44.000 0.00 0.00 0.00 2.94
1320 1416 5.190726 ACAGAGGAGGGAAAGAAAGAATAGG 59.809 44.000 0.00 0.00 0.00 2.57
1321 1417 6.306643 ACAGAGGAGGGAAAGAAAGAATAG 57.693 41.667 0.00 0.00 0.00 1.73
1322 1418 6.704056 AACAGAGGAGGGAAAGAAAGAATA 57.296 37.500 0.00 0.00 0.00 1.75
1323 1419 5.590976 AACAGAGGAGGGAAAGAAAGAAT 57.409 39.130 0.00 0.00 0.00 2.40
1324 1420 5.133221 CAAACAGAGGAGGGAAAGAAAGAA 58.867 41.667 0.00 0.00 0.00 2.52
1325 1421 4.166144 ACAAACAGAGGAGGGAAAGAAAGA 59.834 41.667 0.00 0.00 0.00 2.52
1326 1422 4.464947 ACAAACAGAGGAGGGAAAGAAAG 58.535 43.478 0.00 0.00 0.00 2.62
1327 1423 4.519906 ACAAACAGAGGAGGGAAAGAAA 57.480 40.909 0.00 0.00 0.00 2.52
1328 1424 4.080015 TGAACAAACAGAGGAGGGAAAGAA 60.080 41.667 0.00 0.00 0.00 2.52
1329 1425 3.458118 TGAACAAACAGAGGAGGGAAAGA 59.542 43.478 0.00 0.00 0.00 2.52
1330 1426 3.820557 TGAACAAACAGAGGAGGGAAAG 58.179 45.455 0.00 0.00 0.00 2.62
1333 1429 2.305927 GGATGAACAAACAGAGGAGGGA 59.694 50.000 0.00 0.00 0.00 4.20
1343 1447 5.977129 ACGAACTGAATTTGGATGAACAAAC 59.023 36.000 0.00 0.00 42.51 2.93
1345 1449 5.766150 ACGAACTGAATTTGGATGAACAA 57.234 34.783 0.00 0.00 0.00 2.83
1357 1461 8.088981 ACTCAGAAAGTAACATACGAACTGAAT 58.911 33.333 0.00 0.00 36.07 2.57
1374 1478 1.004044 AGGGCCACATGACTCAGAAAG 59.996 52.381 6.18 0.00 0.00 2.62
1402 1506 3.679824 TGATTGCCAAATCATGTGCAA 57.320 38.095 0.00 0.00 45.76 4.08
1410 1514 7.439056 TCAAACTTCTTTTCTGATTGCCAAATC 59.561 33.333 0.00 0.00 42.28 2.17
1411 1515 7.274447 TCAAACTTCTTTTCTGATTGCCAAAT 58.726 30.769 0.00 0.00 0.00 2.32
1414 1520 5.850557 TCAAACTTCTTTTCTGATTGCCA 57.149 34.783 0.00 0.00 0.00 4.92
1416 1522 5.119743 GCCATCAAACTTCTTTTCTGATTGC 59.880 40.000 0.00 0.00 0.00 3.56
1417 1523 5.636543 GGCCATCAAACTTCTTTTCTGATTG 59.363 40.000 0.00 0.00 0.00 2.67
1426 1532 4.154942 AGTTCATGGCCATCAAACTTCTT 58.845 39.130 26.74 12.89 0.00 2.52
1428 1534 4.525912 AAGTTCATGGCCATCAAACTTC 57.474 40.909 31.89 12.91 35.80 3.01
1434 1540 3.159213 AGACAAAGTTCATGGCCATCA 57.841 42.857 17.61 0.00 0.00 3.07
1435 1541 3.629398 CCTAGACAAAGTTCATGGCCATC 59.371 47.826 17.61 4.79 0.00 3.51
1436 1542 3.010584 ACCTAGACAAAGTTCATGGCCAT 59.989 43.478 14.09 14.09 0.00 4.40
1447 1560 7.985476 TCAAACTTCAAGAAACCTAGACAAAG 58.015 34.615 0.00 0.00 0.00 2.77
1448 1561 7.931578 TCAAACTTCAAGAAACCTAGACAAA 57.068 32.000 0.00 0.00 0.00 2.83
1474 1587 8.174733 ACATCTTCAGATTTCAAATCAACAGT 57.825 30.769 12.74 0.00 31.21 3.55
1481 1594 7.557719 ACCGGATAACATCTTCAGATTTCAAAT 59.442 33.333 9.46 0.00 31.21 2.32
1495 1608 5.644636 TCAAACCAACTAACCGGATAACATC 59.355 40.000 9.46 0.00 0.00 3.06
1509 1622 0.033601 TGGCACACCTCAAACCAACT 60.034 50.000 0.00 0.00 36.63 3.16
1550 1671 3.861840 CATACAGACTGTTACCCCACTG 58.138 50.000 14.50 0.00 0.00 3.66
1551 1672 2.236395 GCATACAGACTGTTACCCCACT 59.764 50.000 14.50 0.00 0.00 4.00
1559 1680 8.507249 GTCAAAATCTTTAGCATACAGACTGTT 58.493 33.333 14.50 0.00 0.00 3.16
1564 1685 7.994425 TTGGTCAAAATCTTTAGCATACAGA 57.006 32.000 0.00 0.00 0.00 3.41
1578 1699 9.949174 GTGCTTTATTTCAAATTTGGTCAAAAT 57.051 25.926 17.90 16.57 40.32 1.82
1639 1761 7.517614 TTAAGCATGTCATAAACCAAGAACA 57.482 32.000 0.00 0.00 0.00 3.18
1693 1815 9.184523 GAACTAGTGTAGCCTATCAGATATCAT 57.815 37.037 5.32 0.00 0.00 2.45
1696 1818 8.167392 AGTGAACTAGTGTAGCCTATCAGATAT 58.833 37.037 0.00 0.00 0.00 1.63
1697 1819 7.519057 AGTGAACTAGTGTAGCCTATCAGATA 58.481 38.462 0.00 0.00 0.00 1.98
1760 1883 3.389925 TTTCTCTTTTTGCCCAGCATG 57.610 42.857 0.00 0.00 38.76 4.06
1845 1968 9.818796 GTTTACATTCTCATCTCTTTGTTCTTC 57.181 33.333 0.00 0.00 0.00 2.87
1966 2091 5.919348 ATCATCATAGGGAAATGTGTCCT 57.081 39.130 0.00 0.00 37.85 3.85
2097 2222 8.692110 TGACTGCTTTCATGCAAATAATTAAG 57.308 30.769 0.00 0.00 42.83 1.85
2131 2256 6.433847 TGATAGTTAATCATGGGGTGTAGG 57.566 41.667 0.00 0.00 39.77 3.18
2132 2257 7.226720 GTGTTGATAGTTAATCATGGGGTGTAG 59.773 40.741 0.00 0.00 44.13 2.74
2133 2258 7.051623 GTGTTGATAGTTAATCATGGGGTGTA 58.948 38.462 0.00 0.00 44.13 2.90
2212 2343 0.609406 GAAGGAAGGGGTTGGAGCAC 60.609 60.000 0.00 0.00 0.00 4.40
2221 2352 0.548510 GAGGGTGATGAAGGAAGGGG 59.451 60.000 0.00 0.00 0.00 4.79
2228 2359 4.100653 TCAGCAGATTAGAGGGTGATGAAG 59.899 45.833 0.00 0.00 32.66 3.02
2229 2360 4.033009 TCAGCAGATTAGAGGGTGATGAA 58.967 43.478 0.00 0.00 32.66 2.57
2230 2361 3.646534 TCAGCAGATTAGAGGGTGATGA 58.353 45.455 0.00 0.00 34.47 2.92
2231 2362 4.620589 ATCAGCAGATTAGAGGGTGATG 57.379 45.455 4.93 0.00 45.10 3.07
2315 2446 2.514592 CTTCCGCGCCATGGATGT 60.515 61.111 18.40 0.00 34.91 3.06
2318 2449 4.408821 AAGCTTCCGCGCCATGGA 62.409 61.111 18.40 0.00 42.32 3.41
2339 2470 1.376609 CTCTGCCCCAACATAACCGC 61.377 60.000 0.00 0.00 0.00 5.68
2348 2479 2.550277 TCACTATCTCTCTGCCCCAA 57.450 50.000 0.00 0.00 0.00 4.12
2371 2502 3.739300 GGAGATACAATGCAATGCAATGC 59.261 43.478 21.76 19.99 42.49 3.56
2372 2503 4.982295 CAGGAGATACAATGCAATGCAATG 59.018 41.667 20.44 20.44 44.07 2.82
2373 2504 4.891168 TCAGGAGATACAATGCAATGCAAT 59.109 37.500 13.45 0.00 43.62 3.56
2374 2505 4.271661 TCAGGAGATACAATGCAATGCAA 58.728 39.130 13.45 0.00 43.62 4.08
2398 2529 2.952310 AGCTCTTGTTTGTTGTCCCTTC 59.048 45.455 0.00 0.00 0.00 3.46
2567 2710 4.596585 CCCCCACCACACCACCAC 62.597 72.222 0.00 0.00 0.00 4.16
2714 2864 4.749099 GCATCAAAACCAAACAATGTGCTA 59.251 37.500 0.00 0.00 0.00 3.49
2746 2896 5.308825 ACTGATACAGTGACAAGGGAAAAG 58.691 41.667 0.00 0.00 43.63 2.27
2870 3033 2.093764 CCTCTCTAGTGAGCTTGGGTTG 60.094 54.545 15.04 0.00 40.03 3.77
2877 3040 2.354604 GCAAAAGCCTCTCTAGTGAGCT 60.355 50.000 15.04 12.68 40.03 4.09
2900 3071 1.064389 AGTAAAGCAAGATGGGGAGCC 60.064 52.381 0.00 0.00 0.00 4.70
2902 3073 3.879892 GCTAAGTAAAGCAAGATGGGGAG 59.120 47.826 0.00 0.00 42.30 4.30
2918 3089 5.425539 AGTGGACATGTACAATAGGCTAAGT 59.574 40.000 13.68 3.18 0.00 2.24
2920 3091 5.950544 AGTGGACATGTACAATAGGCTAA 57.049 39.130 13.68 0.00 0.00 3.09
2968 3143 3.245371 TGGGCATCAGAGAAACCTCAAAT 60.245 43.478 0.00 0.00 33.16 2.32
2969 3144 2.108075 TGGGCATCAGAGAAACCTCAAA 59.892 45.455 0.00 0.00 33.16 2.69
2971 3146 1.361204 TGGGCATCAGAGAAACCTCA 58.639 50.000 0.00 0.00 33.16 3.86
2972 3147 2.725221 ATGGGCATCAGAGAAACCTC 57.275 50.000 0.00 0.00 0.00 3.85
2973 3148 2.579860 AGAATGGGCATCAGAGAAACCT 59.420 45.455 0.00 0.00 0.00 3.50
2974 3149 2.686915 CAGAATGGGCATCAGAGAAACC 59.313 50.000 0.00 0.00 0.00 3.27
2996 3171 3.961480 AATTTGGGTCTAAGGCAAAGC 57.039 42.857 0.00 0.00 0.00 3.51
3015 3190 9.881649 TGCCATGTTGAATGCTAATTTATTTAA 57.118 25.926 0.00 0.00 0.00 1.52
3016 3191 9.311916 GTGCCATGTTGAATGCTAATTTATTTA 57.688 29.630 0.00 0.00 0.00 1.40
3017 3192 7.280652 GGTGCCATGTTGAATGCTAATTTATTT 59.719 33.333 0.00 0.00 0.00 1.40
3018 3193 6.762661 GGTGCCATGTTGAATGCTAATTTATT 59.237 34.615 0.00 0.00 0.00 1.40
3019 3194 6.127111 TGGTGCCATGTTGAATGCTAATTTAT 60.127 34.615 0.00 0.00 0.00 1.40
3020 3195 5.186603 TGGTGCCATGTTGAATGCTAATTTA 59.813 36.000 0.00 0.00 0.00 1.40
3021 3196 4.020396 TGGTGCCATGTTGAATGCTAATTT 60.020 37.500 0.00 0.00 0.00 1.82
3022 3197 3.514706 TGGTGCCATGTTGAATGCTAATT 59.485 39.130 0.00 0.00 0.00 1.40
3023 3198 3.098377 TGGTGCCATGTTGAATGCTAAT 58.902 40.909 0.00 0.00 0.00 1.73
3024 3199 2.523245 TGGTGCCATGTTGAATGCTAA 58.477 42.857 0.00 0.00 0.00 3.09
3025 3200 2.212812 TGGTGCCATGTTGAATGCTA 57.787 45.000 0.00 0.00 0.00 3.49
3053 3242 8.507249 TGTTTTCGTTCATGGAAAAATTGTTTT 58.493 25.926 9.15 0.00 42.91 2.43
3056 3245 7.602517 TTGTTTTCGTTCATGGAAAAATTGT 57.397 28.000 9.15 0.00 42.91 2.71
3064 3253 6.443934 TTCTTCTTTGTTTTCGTTCATGGA 57.556 33.333 0.00 0.00 0.00 3.41
3066 3255 5.743398 TGCTTCTTCTTTGTTTTCGTTCATG 59.257 36.000 0.00 0.00 0.00 3.07
3068 3257 5.303747 TGCTTCTTCTTTGTTTTCGTTCA 57.696 34.783 0.00 0.00 0.00 3.18
3069 3258 4.735338 CCTGCTTCTTCTTTGTTTTCGTTC 59.265 41.667 0.00 0.00 0.00 3.95
3082 3272 6.215845 TGCTTTAATTTTCACCTGCTTCTTC 58.784 36.000 0.00 0.00 0.00 2.87
3236 3450 1.241315 TGCTTTGGGGCTCGCTTTAC 61.241 55.000 0.00 0.00 0.00 2.01
3266 3481 2.356313 AACAGCGTGCTCTCACCG 60.356 61.111 0.00 0.00 40.04 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.