>input_sequence_55013
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-------------------------------------------------ATGAGAGGGCCGGCCGCGTCCGGGGGGCGGG
CATCGGCGG------CGGCCGTCTTGTTGGGAGTTCTTGTTTTGGTGTCGTTGGTGGTCGTGGTGGCGGAGAGGCCGCCT
GCGCCGGCGATCGGAGGGCGGAGGATGCTGCTGGCAGGCGATGGAGGAGAGGCCAGGAGGACTCTGGAGAATTTCCGGGC
CGACGATCCTTTCCAGGACAGCGCGAGGAGGGTGCCCAATGGCCCTGATCCTATCCACAACAGGTACTTCACCTTACCTT
TTTCTCCGCTCGTTGCATTGCAAGATTGGCTCTGAATTTTTGGAGCTGGCTCCATCCTATTCTTTCTTTCCC--------
TCCTCTGTTTGTTCATCCAAATTCAGTTCGTATGTTACTTTCTGAGTCATGTGGCCCTGTAAAATTTGCACATGA--TTT
GGCAATCAGAAAAGAAGTTTGA-------TGGCCATGAACTTTGTCTAGGTTTCTTGAAGTTTGATACTGTTGATTTGAA
ATCTGAAGATGTTATCCGGTTAGTTGGTT--------TGAGGTGTGCCATTGTTACAGTGCTTTTTTGCACAGTGGGGTA
ACAGTCTGTATGCTAAAGA-TTTTGACCAAATTTGAAATAAAGCACTCCTACTGCCTGTGATGGCTCTTTACCAAGAACA
TGTTCTTGGTTTATGACATGCTTAATGTGCCATGAAATAGGTCTAGTGTTTAATATGATATCTGATAGGCTACACTAGTT
CACTCCGTAGCATTCCATATGCTCTGTTTTC-TGAATTTTCTCATGCTGGGCAAAAAGAGAAATATATAAATATTCAGGA
ACTCAACATGTTTTAATGGATAATTTTGTTTGACCATAAAGGGGTGAGAAGAACAAAGAGATGAGAATGTAAACAAAGAT
GGCACAGCTCTTTTTCCTCCTGCCTCACACCCACATTCCCCAATGATATTGTTCAAAAA--AAGCATATGATATTTTTGT
TGTTGTCGCCAGGACACATTTCCCTATGATGATATGCTATTCTTTCAGCTATAGCAAGTTGATTAGTCTTATTCTTCTTT
TCTGTTCAACAAATTATTATCATACTCAGTAGCAAAGGATGCACATACCAGACTTGGAATGCTTAATTATTTGCATGAAA
GCAGTCAAACAAAGCCCTACACCCCATGATTAACTATCAACACAACAGATC--CTAACGGTTCAGTGTAGGGTCACCTGA
AA----CACAGACTGCCAAATGGTGCTCCAACCCCTTCCTTCATCACCCTCTAATCTGCTGATTTTTTCTTCAGGGGTGC
CGGCAAGTCCGGAAGATCGCCGGGGCGAGCGTAG----------------------------------------------
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>chr5B_1_TraesCS5B01G459000
TTTTGTTGCAAAATATTCTGAGATCAATGAGCCGATTTTCG-CATGTAGGGGGGCACCAGCA------------CCATCA
GATTCGAAATGGATGGACTCCATTTGATCAACGCATTGTAATCCGGACCCGCAAAAC-AAAAAAGGATGGTGACACAAGG
CCTGAAAGCGGCGCTTATTTCTTCAGGGCGCTGTTCACTTTGGAGCTTGCTTTCGGGCCTCCTCGCCTCACTCACTCGCT
TTTACCATGCCCCCGCCCTCTCCCCTAGTCGAGTTACCCCAAAGATGAAATTCTTTCCCGTCTCTTTCGCCACCCACACG
ACAAGATGCAACGCAGCCCGGAAATTTTTACCCCTCCGCCTCCCGAGAGAGAGAGAGGGAGGGAATCTACATCTACGTAG
CCCGAGTTCAAAAAAAGGGAAAGAGG-AGAAATAAAGACGGAGCGCAAGTACAGCCTTAGGGATCAGGATCCAGAGTTTC
GGACAGCAATGGCTCATACTACTACTACAACTTTACTTTCT------------------CACTCCCTCTCACTCACTGGC
C---GTCTTTTTTACTCGCGAGAGGAAACAAGAGATTGTTGGAAAGAAAAAGGAAACAGCGCCAACTCAGAGAAGGGGGG
GAAAGCAGGGGCGCC------------ATGGCCATGGCGATGGCGATGCCAAAAGAAAAGCGGGCATGGCCATGGGTCGC
TGGCC-------------TGCTTTGGCGCTCCTCGCCACCATGGCTCGGGTCCTTGAAAAGCACGGCAGAATCAGGCTAA
AGCAAAAGAAGCGCAGAAGAAAACAAGAAGCAGGAATACTACCGCTCGCAACAGCGACTGACACAAGCCCCTGCTGCTTC
TACTTCCCCCTCCCCCCCTTCCCCTCTCCCCCGCATTATAATATGCAGCCACGCCGCAGCAGCGGCAGCAGCCAGCCAGC
CAGCCAGCGTCGTCGCAGCCGCACCGCCACCCCCACCCCCGCCG----------------GAAACAGAGGAG-----AGG
GAGGAGGAGGA-------GGCGAGGAGCGCGTGGCTGGTTGGTGGTGCTATGAGAGGGCCGGCCGCGTCCGGGGGGCGGG
CATCGGCGG------CGGCCGTCTTGTTGGGAGTTCTTGTTTTGGTGTCGTTGGTGGTCGTGGTGGCGGAGAGGCCGCCT
GCGCCGGCGATCGGAGGGCGGAGGATGCTGCTGGCAGGCGATGGAGGAGAGGCCAGGAGGACTCTGGAGAATTTCCGGGC
CGACGATCCTTTCCAGGACAGCGCGAGGAGGGTGCCCAATGGCCCTGATCCTATCCACAACAGGTACTTCACCTTACCTT
TTTCTCCGCTCGTTGCATTGCAAGATTGGCTCTGAATTTTTGGAGCTGGCTCCATCCTATTCTTTCTTTCCC--------
TCCTCTGTTTGTTCATCCAAATTCAGTTCGTATGTTACTTTCTGAGTCATGTGGCCCTGTAAAATTTGCACATGA--TTT
GGCAATCAGAAAAGAAGTTTGA-------TGGCCATGAACTTTGTCTAGGTTTCTTGAAGTTTGATACTGTTGATTTGAA
ATCTGAAGATGTTATCCGGTTAGTTGGTT--------TGAGGTGTGCCATTGTTACAGTGCTTTTTTGCACAGTGGGGTA
ACAGTCTGTATGCTAAAGA-TTTTGACCAAATTTGAAATAAAGCACTCCTACTGCCTGTGATGGCTCTTTACCAAGAACA
TGTTCTTGGTTTATGACATGCTTAATGTGCCATGAAATAGGTCTAGTGTTTAATATGATATCTGATAGGCTACACTAGTT
CACTCCGTAGCATTCCATATGCTCTGTTTTC-TGAATTTTCTCATGCTGGGCAAAAAGAGAAATATATAAATATTCAGGA
ACTCAACATGTTTTAATGGATAATTTTGTTTGACCATAAAGGGGTGAGAAGAACAAAGAGATGAGAATGTAAACAAAGAT
GGCACAGCTCTTTTTCCTCCTGCCTCACACCCACATTCCCCAATGATATTGTTCAAAAA--AAGCATATGATATTTTTGT
TGTTGTCGCCAGGACACATTTCCCTATGATGATATGCTATTCTTTCAGCTATAGCAAGTTGATTAGTCTTATTCTTCTTT
TCTGTTCAACAAATTATTATCATACTCAGTAGCAAAGGATGCACATACCAGACTTGGAATGCTTAATTATTTGCATGAAA
GCAGTCAAACAAAGCCCTACACCCCATGATTAACTATCAACACAACAGATC--CTAACGGTTCAGTGTAGGGTCACCTGA
AA----CACAGACTGCCAAATGGTGCTCCAACCCCTTCCTTCATCACCCTCTAATCTGCTGATTTTTTCTTCAGGGGTGC
CGGCAAGTCCGGAAGATCGCCGGGGCGAGCGTAGGGGCGCGGCGCACATCCATGGCGCGGAAGCTTCCGGCGGTTATGTT
GGGGCAGAGAGATAGTGAATTGCATTGCATTGCATTGTATCTCCTGAAGAAGGGACAACAAACAAGAGCTACTACAATAT
ATTATGGTGGGTCTGGA---------TGGTGTAACT-AGGGAGGG-GGA-GGTGGCCTGGACATGGGACTATCTTGTTCT
AAGCACTGCTATTTAAGAAGGTTTTAAGCATAAAAACTTTAGCTTTTTTGCGAAAACAGAGGCTGTGTTGTGGTGGTGTG
GTGGGGGG-TTCAGTTTTGTAAAGTGACCAAGCTTCCCTCTCAAGCACCAAAGATTCTTGGCAATGGGGGCAAGAGCTCC
TTTCCC-TTT-----TTTTTTGGCAGAAGTGACTTTAGTCATGTTAGTACTCCTACTACTATTTAGCACATTGTTTGGTT
TTGATGCCCACTTTCCTTTT-CCCTTGTCACTGTATCAGTTTCAGAACCACACAGTAAGTTTTGGCACAGAGG-------
-AAACAAAC----AAACAACAGGTCAGCAAAGAAGGACCAATACACAATCTGCAGGTTCTCACCTAATAAAGCAACCCAA
GCT-C-------ACTAGAGAGGCTTTTGCCGGCTCCCCATCTTGCTTTACTTAGCCTATTGTACATGTCCAC----TTTG
TTCCCTCCAAAATTTCAAAATTATTTGAGGTTTCTCTGATGCCCATTCTGGCTTTGCCTTAGACCCAAATTAAATAAATT
A--------------GCATTCAACATGGCACCAAAAAGAAGAAAACAATTTTTCCATGAACGAAAACAAA-GAAGAAGCA
GGTGAAAATTAAAGCAGTGGCAAAGAGAAAGCAGAGGAACAA-----------AGC-------------AGCAAGCAAGC
AATGCTTTTCCTCCCACCCCCCAACCCTTCTGATTCCCTCCTCCTCTCTTTAACTTCTTTTCTTGTAGCTTAGTAGTAGC
TTTGAACAGGTAAAGCGAGCCCC-AAAGCAAGGGCTGGGGCGGTGAGAGCACGCTGTTGCTGTGGGACTAAAACATGT
>chr5D_3
--TTGTTGCAAAATATTCTGAAACCACCGAGCTGAT-TTCG-CATGTAGGGGGGCACCAGCA------------CCATCA
GATTCGAAATGGATGGACTCCATTTGATCAACGCATTGTAATCCGGACCCCCAAAACAAAAAAAGGATGGTGACACAAGG
CCTGAAAGCGGCGCTTATTTCTTCAGGGCGCTGTTCACTTTGGGGCCTCGC-------------------CTCACTCACT
TTTACCATGCCCCCGCCCTCTCCCCTA---GAGTTACCCCAAAGATGAAATTCTTTCCCGTCTCTTTCGCCACCCACACG
ACAAG---------AGCCCGGAAATTTTTACCCCTCAC--------------GAGAGAGAGGGAATCTACGTCTACGTAG
CTCCAGTTCAAAAAAAGGAAAAGAGGAGAAAATAAAGACGGAGCGCAAGTACAGCCTTAGGGATCAGGATCCAGAGTTTC
GGACAGCAATGGCTCATG---------CAACTTTACTTTCTTCCTCCTTA-------CTCACTCTCACTCTCTCACTCAA
T---GTCTTTTTTACTCACGAGAAGAAACAAGAGATTGTTGGAAAGAAAAAGGAAACAGCACCAACTCAGAGAAGGGGGT
AAAAGCAGGGGCGCC------------ATGGCGATTG------------CAAAAGAAAAGCGGGCATGGCTGGCTGGCGG
GCATGGCAATGGGCCGCTTGCTTTGGTGCTCCTCGCCACCATGGCTCGGGTCCTTGAAAAGCACGGCAGAATCAGGCTAA
AGCAAAAGAAGCCCAGAAGAAAACAAGAAGCCGGAATACTACCGCTCGCAACAGCGACTGACACAAGCCCCTGCTGCTTC
TACTTCCCCCTCCCCC--TCCCCGTC-CCCCCGCATTATAATATGCAGCCACGCCGCAGCAGCCGCAG--------CAGC
CAGCCAGCGTCGTCGCAGCCGCACCGCCACCCCCACCCACGCCCACCGGAAAAGGAAGAAGAAACAGAGGAG-----AGG
GAGGAGGAGGCGAGCGGCGGCGGGGAGCGCGTGCCTGGTTGGTGGTGCTATGAGAGGGCCGGCCGCGTCCGGGGGGCGGG
CATCGGCGGCGGCGCCGGCCGTCTTGTTCGGAGTTCTTGTTTTGGTGTCGTTGGTGGTCGTGGTGGCCGAGAGGCCGTCC
GCGCCGGCGATCGGAGGGCGGAGGATGCTGCTGCCGGGCGACGGAGGAGAGGCCAGGAGGACTCTGGAGGATTTCAGGGC
CGACGATCCTTTCCAGGACAGCGCGAGGAGGGTGCCCAATGGCCCTGATCCTATCCACAACAGGTACTTCACTACACCTT
TCTTCAGTGT-GTTGCATTTCAAGATTGCCTCTGAATTTTGTGAGTTGGT----------------TCCTTTCTCTGTTT
TCCTCTTTGCGTTCATCCAACTTCAGTTCGTATGTTAGTTTCAGAGTCATGTGGCCCTGTAAAATCTGCAAATTGATTTG
GCAAATCGGAATATAAGTTCCTATGTTCTTGGCCATGAATATTGTCTAGGTTTCTTCAAGTTTGGTTCTGTTGGTTTGAA
ATCTGAAAATGTTATCCGGTTGGTTGGTCTGAGCCTCTGAGGTGTGCCATTGTTACAGTGCTTTTTTGCA--GTGGGGTG
ACAGACTCTATACTGAATTTTTTTGACCAAGTTTGAAATAAAGCACTCTTACTGCCTGTGATGGCTCTTTACCAAGAACA
AGTTCTTGGTTTATGACATGCTTAATGTGCTAGGAAATACGTCTAGTGTTTAATGTGCCATCTGACAGGCTGCACTAGTT
CACTCTGTAGCATTCCATATGCTCTGTTTTCCTGAATTTTCTTATGCTGGGCAAAAAGAGAAATATATAAGTATTCAGGA
ACTCAACATGTTTTAATGGATAATTTTGTTTGACCATAAAGGGGTGATAAGAACAAAGAGATGAGAATGTAAACAAAGAT
GGCACAGCTCTTTTTCCTCCTGCCTCACACCCACATTCCCCAATGATGTTGTTC-AAAAAAAAGCATATGATATTTTTGT
TGTTGTCGCCGGGACACATTTCCCTATGATGATATGCTATTCTTTCAGCTATAGCAAGTTGATTAGTCTTATTCCTCTTT
TCTGTTCAAGAAATTATTATCATACTCAGTAGCAAAGGATGCACATACCAGACTTGGAATGAGTAATTATTTGCATGAAA
GCAGTCAAACAAAGC---ACACCCCATGATTAACTATCAACACAACAGATGGTCTAACGGTTCAGTGTAGGGTCACCTGA
AAGAAACACAGGCTGCCAAATGCTGCTCCAATCCCTTC----ATCACCCTCTAATCTGCTGAAATTTTCTTCAGGGGTGC
CGGCAAGTCCGGAAGATCGCCGGGGCGAGAGTAGGGGCGCGGCGCGCACCCATGGCGTGGAAGCTTCCGACGGTTATGGT
GGGGCAGGAAGATGG----------TGCATTGCATTGCATCTCCTGAACAAGGGACAACAAACAAGAGCTACTACAATAT
ATTATGGTGGGTCTGGATGGATGTTGTGGTGTAACT-AGGGAGGG-GGA-GGTGGCCTGGACTTGGGACTATCTTGTTCT
AAGCACTGCTATTTAAGAAGGTTTTAAGCATAAAAACTTTAGCTTTTTTGCGAAAACAGAGGCTGTGTTCTACTGGTGGT
GTGGGGGG-TTCAGTTTTGTAAAGTGACCAAGCTTCCCTCTCAAGCACCAAAGATTCTTGGCAATGGGGGCAAGAGCTCC
TTTCCC-TTT-----TTTTTTTGCAGGAGTGACTTTAGTCATGTTAGTACTCCTACTACTATT-AGCACATTGTTTGGTT
TTGATGCCCACTTTCTTTTT-CCCTGGTCACTGTATCAGTTTCAGAACCACACAGTAAGTTTTGGCAAAGAGGA----AA
CAAACAAAC----AAACAAGAGGTCAGCAAACAAGGACCAATGCACAATCTGCAGGTTCTCACCTAATAAAGTAACCCA-
GCT-C-------GGTAGAGAGGCTTTTGCCAGTTCCCCATCTTGCTTTGCCTAGCCTATTGTACATGTCCACTTGTTTTT
TTCCCTCCAAAATTTCAAAATTTATGCTAATTTAAACTTATTTTAAACACAC----------------------------
A--------------GCATCCAACATGGCACCAAAGAACAATAAGCAATTTGCCAC--AACAAAAATAAA-AAAGAAACA
GGTGAAAACTAAAGTGGTAGCAAAGAGAAAGCAGAGGAACAACTGCCAGCCAAAGC-------------AGCAAGCGAGC
AATGCTTTTCCTCCC-CCAACACACCCTTCTGATTCCCTCCTCCTGTCTTTAACTTCTTTTCTTGTAGCTTAGTAGTAGC
TTTGAACAGCTAAAGCGAGCTCCCAAAGCAAGGGCTGTGGTGGTGAGAGCACGCTGTTCCTGTGGGACTAAAACATGT
>chr5A_3
--TTGTTGCAAAATATTCTGAAACCAATGAGCTGAT-TTTCACATGCAGGGGGGCACCAGGATGAAGCGATAATCCAACA
GATTCGAAATGGATGGACTCCATTTGATCAACGCATTGTAATCCGGACCCCCAAAACG-AAAAAGGATGGTGACACAAGG
CCTGAAAGCGGCGCTTATTTCTTCAGGGCGCTGTTCACTTTGGGGCTTGCTTTG--------------------CTCACT
TTTACCATGCCCCCGCCCTCTCCCCTA---GAGTTACCCCAAAGATGAAATTCTTTCCCGTCTCTTTCGCCACCCACATG
ACAACAT-----GCAGCCCCAAAAATTTTACCCCTCCC--------------GAGAGAGAGGGAATCTACATCTACGTAG
CCCGAGCTCAAAAAAAGGAAAAGAGG-GAAAATAAAGACGGAGCGCAAGTACAGCCTTAGGGATCAGGATCCAGAGTTTC
GGACAGCAATGGCTCATACT------ACAACTTTACTTTCTTCCTCCCCCTCTCACTCTCACTCTCACTCTCTCACTCAA
TAATGTCTTTTTTGCTCGCAGGAAGAAACCAGAGATTGTTGGAAAGAAAAAGGAAACAGCGCCAACTCAGAGAAGAGGAA
AAAAGCAGGGGCGCCATGGCCATGGCGATGGCGATGG------------CAAAAGAAAAGCGGGCATGGCGATGGGTCGC
TC-----------------GCTTTGGCGCTCCTCGCCACCATGGCTCGAGTCCTTGAAAAGCACGGCAGAATCAGGCTAA
AGCAAAAGAAGCCCAGAAGAAAACAAGAAGCCGGAATACTACCGCTCGCAACAGCGACTGACACAAGCCCCTGCTGCTTC
TACTTCCCCCTCCCCC--TTCCCCTCTCCCCCGCATTATAATATGCAGCCACGCCGCAGCAGCAGCGGCAG-CAGCCAGC
AAGCCAGCGTCGTC--------ACCCCCACCTCCACCGGGGA-------------AAGAAGAAACAGAGGAGGGGACAGG
GAGGAGGAGGCGAGCGGCGGCGGGGAGCGCGTGCCTGGTTGGTGGTGCTATGAGAGGGCCGGCCGCGTCCGGGGGGCGGG
CATCGGCGG------CGGCCGTCTTGTTCGGAGTTCTTGTTTTGGTGTCGTTGGTCGTCGTGGTGGCGGAGAGGCCGTCC
ACGCCGGCGATCCGAGGGCGGAGGATGCTGCTGGCTGGAGACGGAGGAGAGACCAGGATGACTCTGGAGGATTTCCGGGC
TGATGATCCTTTCCAGGACAGCGCGAGGAGGGTGCCCAATGGCCCTGATCCCATCCACAACAGGTACTTCACCTCACTTT
TTTCTCTGTTCGTTGCATTGCAAGATTGGCTCTGAATTTTGCGGGCTGCT----------------TTCCCC--------
TCCTCTTTCTGTTCATCCAACTTCAGTTCGAATGTTAGTTTCTGAGTCATGTGGCCCTGTAAATTCTGCAAATTGATTTG
CCAGATCAGAATATAAGTTCCTATGTTCTTGGCCATGAATATTGTCTAGGTTTCTTGAAGTTTGGTTCTGTTGCTTTGAA
ATCTGAAAATGTTAGCCGGTTGGTTGGTCTGAG--------GTGTGCCATTGTTACAGTGCTTTTTTGCA--GTGGGGTG
ACAGACTCTATTGAATTTTTTTTTCACCAAATTTGAAATAAAGCACTCTTACTGCCTGGGATGGCTCTTTACCAAGAACA
AGTTCTTGGTTTATGACATGTTTAATGTCCCATGAAATAGGTCTAGTGTATAATGTGCCATCTGATAGACTACACCAGTT
CACTCTGTAGCATTCCATATCCTCTGTTTTCCTGAAATTTCTTATGCTGAGCAAAAAGAGAAATATATAAGAATTCAGGA
ACTCAACATGCTTTAAGACATAATTTTGTTTGACCATAAAGGGGTGATAAGAACAAAGAGATGAGAATGTAAACAAAGAT
GGCACAGCTCTTTTTCCTCCTGCCTCACACCCACATTCCACAATAATATTGTTCAAAAAAAAAGCATATGATATTTTTGG
TCTTGTCGCCGGGACACATTTCCCTATGATGATATGCTATTCTTTCAGCTATAGCAAGTTGATTACTCTTATTCCTCTTT
TCTGTTCAAGAAATTATTATCATACTCAGTAGCAAAGGATGCACATACGAGACTTGGAATGATTAATTATTTGCATGAAA
GCAGTCAAACAAAGC---ACACCCCATGATTAACTATCAACACAACAGATC--CTAACGGTTCAGTGTAGGGTCACCTGA
AAGAAACACAGACTGCCAAATGCTGCTCCAATCCCTTC----ATCGCCCTCTAATCTGATGATTTCTTCTTCAGGGGCGC
TGGCAAGTCCGGAAGATCGCCGGGGCGAGAGTAGGGGCGCG------------------GAAGCTTCCGACGGTTATGGT
GGGGCAGAGAGATGG----------TGCATTGCATTGCATTGCATCTCAAGAAGG-AACAAACAAGAGCTACTACAATAT
ATTATGCTGGGTCTGGATGGATGTTGTGGTGTAACT-AGGGAGGG-GGAGGGTGGCCTGGACTTGGGACTATCTTGTTCT
AAGCACTGCTATTTAAGAAGGTTTTAAGCATAAAAACTTTAGCTTTTTTGCGGAAACAGAGGCTGTGTTCTGGTGGTGTG
GTGGGGGGGTTCAGTTTTGTAAAGTGACCAAGCTTCCCTCTCAAGCACCAAAGATTCTTGGCAATGGGGGCAAGAGCTGC
TTTCCC-TTTCTTTTTTTTTTGGCAGAAATGACTTTAGTCATGTTAGTGCTCCTACTACTATT-AGCACATTGTTTGGTT
TTGATGCCCACTTTCTTTTCCCCCTTGTCACTGTATCAGTTTCAGAACCACACAGTAGGTTTTGCCACAGGGGAAACCAA
CAAACAAAC----AAACAACAGGTCAGCAAACAAGGACCAATACACAATCTGCAGGTTCTCACCTAATAAAGTAACCCT-
GCT-CACTAGAGAGTAGAGAGGCTTTTGCCAGTTCCCCATCTTGCTTTGCCG-----ATTGTACATGTCCACTTGTTTTT
TCCCCTCCAAAATTTCAAAACTTGTGCTAATTTGAACTTACTTTAAACACAC----------------------------
GGAAT-AACACATTTGCATCCAACATGGCACCAAAGAACAATAAGCAATTTGCCAA--AATGAAAACAAA-AAAGAAGCA
GGTGAAAATTAAAGCAGTGGCAAAGAGAAAGCAGAGGAACACCAGCCAGGCTGCCAGCCAAAGCAGCCAAGCAAGCAAGC
AATGCTTTTCCTCCC-CCCACACACCCTTCTGATTCCCTCCTGCTCTCTTTAACTTCTTTTTTTGTGGCTTAGTAGTAGC
TTTGAACAGCTAAAGCGAGCCCCCAAAGCAAGCGCTGGGGTGGTGAGAGCACGCTGTTGCTGTGGGACTGAAACATGT
>chr6D_2394
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---------------------------------------------CTCAAGAAGG-AAAAAACAAGAGCTACTACAATAT
--TATGGTGGGTCTGGATGG---------TGTAACT-AAGGGAGG-GGA-GGTGGCCTGGACATGGGACTATCTTGTTCT
AAGCACTGCTATTTAAGAAGGTTTTAAGCATACAAACTTTAGCTTTTTTGCGAAAACAGAGGCTGTGTTCTAATGGTGGT
GTGG-GGG-TTCAGTTTTGCAAAGTGACCAAGCTTCCCTCTCAAGCACCAAAGATTCTTGGCAATGGGGGCAAGAGCTCC
TTTCCC-TTT-------TTTTGGCAGAAGTGACTTTAGTCAAGTTAGTACTCCTACTACTATT-ACTACATTGTTTGGTT
TTGATGCCCATTTTCTTTTT-CCCCTGTCACTGTATCAGTTTCAGAACCACACAGTAAGTTTTGGCACAGAGG-------
-----AAAC----AAACAACAGGTCAGCAAACAAGGACCAATACACAATCTGTAGGTTCTCACCTAATAAAGTAACCCA-
GCT-C-------AGTAGAGAGGCTTTTGCCAGTTCCCCATCTTGCTTTGCCTAGCCTATTATACAAGTCCAC----TTTT
TTCCCTCCAAAATTTCAGAATTTATGCTAAGTTGAACTTACTTTAAACACAC----------------------------
AGAGT-AACACATTTGCATCCAACATGGCACCAAAGAACAATAATCAATTTTCCAA--AATGAAACCAAA-AAAGAAGCA
AGTGGAAATTAAAGCAGTGGCAAAGC-AAAGCAGAGGAACACCAGCCAGCCTGCCAAGCAAAGCAGC---------AAGA
AATGCTTTTGCTCCT-CCCCACCACCCTTATGATTTT-------TCTCATTAACTTCTTTTCTTGTAGCTTAGTAGTAGC
TTTGAACAGCTCAAGC--------------------------------------------------------------
>chr5D_2407
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--------------------------------------------------------AACAAACAAGAGCTACTACAATAT
--TATGGTGGGTCTGGATGG---------TGTAACT-AAGGGAGGGGGA-GGTGGCCTGGACACGGGACTATCTTGTTCT
AAGCACTGCTATTTAAGAAGGTTTGAAGCATAAAAACTTTAGCGTTTTTGCGAAAACAGAGGCTGTGTTCTACTGGTGGT
GTGGGGGG-TTCAGTTTTGCAAAGTGACCAAGCTTCCCTCTCAAGCACCAAAGATTCTTGGCAACGGGGGCAAGAGCTCC
TTTCCC-TTT-------TTTTGGCAGAAGTGACTTTAGTCATGTTAGTACTCCTACTACTATT-ACTACATTGTTTGGTT
TTGATGCCCACTTTCTTTTT-CCCCTCTCACTGTATCAGTTTCAGAACCACACAGTAAGTTCTGGCACAGAGG-------
-----AAAC----AAACAAGAGGTCAGCAAACAAGGACCAATACACAATCTGTAGGTTCTCACCTAATAAAGTAACCCA-
GCT-C-------AGTAGAGAGGCTTTTGCCAGTTCCCCATCTTGCTTTGCCTAGCCTATTGTACAAGTCCAC----TTTT
T-CCCTCCAAAATTTCAGAATTTATGCTAATTTGAACTTACTTTAAACACAC----------------------------
AGAGT-AACACATTTGCATCCAACATGGCACCAAAGAACAATAAGCAATTTTCCAA--AATGAAACCAAA-AAAGAAGCA
AGTGGAAATTAAAGCAGTGGCAAAGAGAAAGCAGAGGAACACTAGCAAGCCTGCCAAGCAAAGCAGC---------AAGC
AATGCTTTTGCTCCT-CCCCACCACCCTTCGGATTCG-------TCTCTTTAACTTCTTTTCTTGTAGCTTAGTAGTAGC
TTTGAACAGCTAAAGC--------------------------------------------------------------
>chr1D_2407
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--------------------------------------------------------AACAAACAAGAGCTACTACAATAT
--TATGGTGGGTCGGGATGG---------TGTAACT-AAGGGAGGGGGA-GGTGGCCTGGACATGGGACTATCTTGTTCT
AAGCACTGCTATTTAAGAAGGTTTTAAGCATAAAAACTTTAGCTTTTTTGCGAAAACAGAGGCTGTGTTCTACTGGTGGT
GTGGGGGG-TTCAGTTTTGCAAAGTGATCAAGCTTCCCTCTCAAGCACCAAAGATTCTTGGCAATGGGGGCAAGAGCTCC
TTTCCC-TTT-------TTTTGGCAGAAGTGACTTTAGTCATGTTAGTACTCCTACTACTATT-ACTACATTGTTTGGTT
TTGATGCCCACTTTCTTTTT-CCCCTGTCACTTTATCAGTTTCAGAACCACACAGTAAGTTTTGGCACAGAGG-------
-----AAAC----AAACAAGAGGTCAGCAAACAAGGACCAATACACAATCTGCAAGTTCTCACCTAATAAAGTAACCCA-
GCT-C-------AGTAGAGAGGCTTTTGCCAGTTCCCCATCTTGCTTTGCCTAGCCTATTGTACAAGTCCAC----TTTT
TTCCCTCCAAAATTTCAGAATTTATGCTAATTTGAACTTACTTTAAACACAC----------------------------
AGAGT-AACACATTTGCATCCAACATGGCACCAAAGAACAATAAGCAATTTTCCAA--AATGAAACCAAA-AAAGAAGCA
AGTGGAAATTAAAGCAGTGGCAAAGAGAAAGCAGAGGAACACCAGCCAGCCTGCCAAGCAAAGCAGC---------AAGC
AATGCTTTTGCTCCT-CCCCACCACCCTTCTGATTCG-------TCTCTTTAACTTCTTTTCTTGTAGCTTAGTAGTAGC
TTTGAACAGCTAAAGC--------------------------------------------------------------
>chr3D_2407
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--------------------------------------------------------AACAAACAAGAGCTACTACAATAT
--TATGGTGGGTCTGGATGG---------TGTAACT-AAGGGAGGGGAA-GGTGGCCTAGACATGGGACTATCTTGTTGT
AAGCACTGCTATTTAAGAAGGTTTTAAGCATAAAAACTTTAGCTTTTTTGCGAAAACAGAGGCTGTGTTCTACTGGTGGT
GTGGGGGG-TTCAGTTTTGCAAAGTGACCAAGCTTTCCTCTCAAGCACCAAAGATTCTTGGCAATGGGGGCAAGAGATCA
TTTCCCTTTT-------TTTTGGCAGAAGTGACTTTAGTCATGTTAGTACTCCTACTACTATT-ACTACATTGTTTGGTT
TTGATGCCCACTTTCTTTTT-CCCCTGTCACTGTATCAGTTTCAGAACCACACAGTAAGTTTTGGCACAGAGG-------
-----AAAC----AAACAAGAGGTCAGCAAACAAGGACCAATACACAATCTGCAGGTTCTCACCTAATAAAGTAACCCA-
ACT-C-------AGTAGAGAGGCTTTTGCCAGTTCCCCATCTTGCTTTGCCTAGCCTATTGTACAAGTCCAC----TTTT
TTCTCTCCAAAATTTCAGAATTTATGCTAATTTGAACTTACTTTAAACACAC----------------------------
AGAGT-AACACATTTGCATCCAACATGGCACCAAAGAACAATAAGCAATTTTCCAA--AATGAAACCAAA-AAAGAAGCA
AGTGGAAATTAAAGAAGTGGCAAAGAGAAAGTAGAGGAACACCAGCCAGCCTGCCAAGCAAAGCAGC---------AAGC
AATGCTTTTGCTCCT-CCCCACCACCCTTCTGATTCG-------TCTCTTTAACTTATTTTCTTGTAGCTTAGTAGTAGC
TTTGAACAGCTAAAGC--------------------------------------------------------------
>chr7D_2407
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--------------------------------------------------------AACAAACAAGAGCTACTACAATAT
--TCTGGTGGGTCTGGATGG---------TATAACTAAGGGAGGG-GGA-GGTGGCCTGGACATGGGACTATCTTGTTCT
AAGCACTGCTATTTAAGTAGGTTTTAAGCATAAAAACTTTAGCTTTTTTGCGAAAATAGAGGCTGTGTTCTACTGGTGGT
GT-GGGGG-TTCAGTTTTGCAAAGTGACCAAGCTTCCCTCTCAAGCACCAAAGATTCTTGGCAATGGGGGCAAGAGCTCC
TTTCCC-TTT-----T-TTTTGGCAGAAGTGACTTTACTCATGTTAGTACTCCTACTACTATT-ACTACATTGTTTGGTT
TTGATGCCCACTTTCTTTTT-CCCCTGTCATTGTATCAGTTTCAGAACCACACAATAAGTTTTGGCACAGAGG-------
-----AAAC----AAACAAGAGGTCAGCAAACAAGGACCAATACACAATCTGCAGGTTCTCACCTAATAAAGTAACCCA-
GCT-C-------AGTAGAGAGGCTTTTGCCAGTTCCCCATCTTGCTTTGCCTAGCCTATTGTACAAGTCCAC----TTTT
TTCCCTCCAAAATTTCAGAATTTATGCTAATTTGAACTTAGTTTAAACACAC----------------------------
AGAGT-AACACATTTGCATCCAACATGGCACCAAAGAACAATAAGCAATTTTCCAA--AATGAAACCAAA-AAAGAAGCA
AGTGGAAATTAAAGCAGTGGCAAAGATAAACCAGAGGAACACCAGCCAGCCTGCCAAGCAAAGCAGC---------AAGC
AATGCTTTTGCTCCT-GCCCACCACCCTTCTGATTCG-------TCTCTTTAACTTCTTTTCTTGTAGTTTAGTAGTAGC
TTTGAACAGCTAAAGCTAG-----------------------------------------------------------
>chr7A_2687
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-----------------------------------TATTCATGTTAGTACTCCAACTACTATT-AGTACATTGTTTGGTT
TTGATGCCCACTTTCTTTTT-CCCTTGTCACTGTATTAGTCTCAGAACCACACAGTTAGTTTTGCCACAGAGG-------
-----AAACCAACAAACAACAGGTCATCAAAGAAGGACCAATACACAATCTGCAGGTTCTCACCTAATAAAGTAACCCA-
AGCCC-------ACTAGAGAGGCTTTTGCAAGTTCCCCATCTTGCTTTGCCTAGCCTATTGTACATGTCCAC----TTTT
TTCCCTCCAAAATTTCAAAATTTATGCTAATTTGAATTTACTTTATGCACAC----------------------------
AAAATAAACATGTTTGCATTCAACATGGCACCAAAAACCAAGAAGCAATTTTCCAC--AATGAAAAC-AA-AAAGAGGCA
AGTGAAAATTAAAGCAGTGGCAAAGAGAAAGCAGAGGAACACCAGCTAGCCTGCCAAGCAAAGCAGC---------AAGC
CATGCTTTTGCTCCCAACCCCCAACCCTTCTGATTCCCACCTCCTCTCTTTAACTTCTTTTCTTGTAGATTAGTAGTAGC
TTTGAACAGCTAAAGCGAGCCCC-AAAGCAAGGGTTGTGGTGGTGAGAGCATGTTGTTCCTGTGGGACTAAAACATGT
>chr6A_2709
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---------------------------------------------------------ACTATT-AGTACATTGTTTGGTT
TTGATGCCCACTTTCTTTTT-CCCTTGTCACTGTATCAGTTTCAGAACCACACAGTAAGTTTTGCCAGAGAGG-------
-----AAACCAACAAATAACAGGTCAGCAAAGAAGGACCAACACACAATCTGTAGGTTCTCACCTAATAAAGTAACCCA-
AGCCC-------ACTAGAGAGGCTTTTGCCAGTTCCCCATCTTGCTTTGCCTAGCCTATTGTACATGTCCAC----TTTT
TTCCA-CCAAAATTTCAAAATTTATGCTAATTTGAATTTACTTTATGCACAT----------------------------
AAAATAAACATGTTTGCATTCAACATGGCACCAAAAACCAAGAAGCAATTTTCCAC--AATGAAAAC-AACAAAGAGGCA
AGTGAAAATTAAAGCAGTGGCAAAGAGAAAGCAGAGGAACACCAGCCAACCTGCCAAGCAAAGCAGC---------AAGC
CATGCTTTTGCTCCCAACCCCCAACCCTTCTGATTCCCTCCTCCTCTCTTTAACTTTTTTTCTTGTAGCTTAGTAGTAGA
TTTGAACAGCTAAAGCGAGCCCC-AAAGCAAGGGCTGGGGTGGTGAGAGCACGCTGTTCCTGTGGGACTAAAA-----
>SNPs
SS-------------------S-S--------S---S-------------------------------------------
--------------------------------------------------S-----------------------------
-------------------------------------------S---------SSSSSSSSSSSSSSSSS-------S--
---------------------------SSS--------------------------------------------------
-------SSSSS-------------------------SSSSSSSSSSSSSSS-----S----------------------
------------------S--------SS---------------------------------------------------
--------------------SSSSSS--------------------------------------S-S---S------SSS
S----------------------S-------------------------------------------------------S
S-------------------------------S----SSSSSSSSSSSS---------------------S---------
-SSSS---------------------------------------------------------------------------
------------S------------------S------------------------------------------------
----------------SS---------------------------------------------S-------S--------
--------------------------------------S----S------------------------------------
----------S-----------S----------S----------------------------------------------
----------------------------S------------------------------------------------S-S
-----------------------------------S-----S---------------------------S----------
--------------------------------------------------------------------------S-----
------S-S-------------------------------SS-------SSSSSSSSSSSSSSSSS--S-----------
------S-S-----------S----------------S---------------------------S----S--SS----S
-SS--------S-S-----SSS-----------------SS-----------------------S-S------S------
-------S-------------S------S-----------------------------------------SS-------S
----S--S---S-----SS-----------------------------S-------------------------------
S-----------------------------------------------------S--SS---------------------
-----S------------------------------------S---------------------------S---------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------S-----
---------S---------------------------------------------------S------------------
---------------SSS--------------------------------------------------------------
----------------------S--------S------SSSS--------------------------------------
-----------------------------S---------------S--S--------S-----------S--------S-
-------------S-SSSSSSSSSS------------S----------S-------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
---------------S----------------------------------------------------------------
------------------------------------------------------------------------S------S
------------------------------S-S---------------S-S----------------------------S
----------------------SS-SSSSS---SSS-SSS-SSS--S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSS
-------------------------------------SS-SS--S-------S-S-SS-------------S--------
--------------------------------------------------------------------------------
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---------S------------------------------S-------------------------------------
>forward_378
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--------------------------------------CCTCCCGAGAGAGAGAGAGG----------------------
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>reverse_1622
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---------------------AGTTGGTTTGAGGTGTGCCA---------------------------------------
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>forward_559
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-----------------------------------------------------------CACTCCCTCTCACTCACTGG-
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>reverse_2352
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-------------------------------CCCCTTCCTTCATCACCCTC-----------------------------
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------------------------------------------------------------------------------
>forward_1685
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-----------------------------------------------------------------TTGCACAGTGGGGTA
ACAGT---------------------------------------------------------------------------
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>reverse_3071
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------------------------------GGCTCCCCATCTTGCTTTACT-----------------------------
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------------------------------------------------------------------------------
