Multiple sequence alignment - TraesCS5B01G436600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G436600 chr5B 100.000 2871 0 0 1 2871 610295534 610292664 0.000000e+00 5302.0
1 TraesCS5B01G436600 chr5D 90.271 2107 111 37 1 2041 494183508 494181430 0.000000e+00 2669.0
2 TraesCS5B01G436600 chr5A 86.461 2105 152 48 1 2041 617175670 617173635 0.000000e+00 2185.0
3 TraesCS5B01G436600 chr5A 89.208 871 69 13 1 851 617188665 617187800 0.000000e+00 1064.0
4 TraesCS5B01G436600 chr5A 88.750 80 9 0 2524 2603 136911750 136911671 6.550000e-17 99.0
5 TraesCS5B01G436600 chr5A 78.313 166 25 11 2547 2704 189817957 189817795 2.350000e-16 97.1
6 TraesCS5B01G436600 chr4A 78.596 570 76 24 1227 1759 12377457 12378017 4.580000e-88 335.0
7 TraesCS5B01G436600 chr3D 84.791 263 35 4 1227 1489 555333418 555333161 2.840000e-65 259.0
8 TraesCS5B01G436600 chr3D 88.750 80 9 0 2524 2603 281103418 281103339 6.550000e-17 99.0
9 TraesCS5B01G436600 chr3A 83.333 264 39 4 1227 1489 433951458 433951717 3.700000e-59 239.0
10 TraesCS5B01G436600 chr3A 88.889 81 9 0 2524 2604 10368169 10368089 1.820000e-17 100.0
11 TraesCS5B01G436600 chr3B 80.228 263 42 6 1227 1489 738626837 738626585 3.780000e-44 189.0
12 TraesCS5B01G436600 chr3B 93.103 58 3 1 2102 2159 420299246 420299302 1.830000e-12 84.2
13 TraesCS5B01G436600 chr6D 88.889 81 9 0 2524 2604 335043590 335043670 1.820000e-17 100.0
14 TraesCS5B01G436600 chr4D 88.889 81 9 0 2524 2604 269649475 269649555 1.820000e-17 100.0
15 TraesCS5B01G436600 chr2D 86.905 84 11 0 2521 2604 323688258 323688341 8.470000e-16 95.3
16 TraesCS5B01G436600 chr2D 87.654 81 10 0 2524 2604 323711772 323711852 8.470000e-16 95.3
17 TraesCS5B01G436600 chr7A 86.207 87 10 2 2527 2613 486268475 486268559 3.050000e-15 93.5
18 TraesCS5B01G436600 chr1B 90.385 52 3 2 2110 2161 631831376 631831327 1.850000e-07 67.6
19 TraesCS5B01G436600 chr2B 94.595 37 1 1 2109 2145 419556507 419556472 4.000000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G436600 chr5B 610292664 610295534 2870 True 5302 5302 100.000 1 2871 1 chr5B.!!$R1 2870
1 TraesCS5B01G436600 chr5D 494181430 494183508 2078 True 2669 2669 90.271 1 2041 1 chr5D.!!$R1 2040
2 TraesCS5B01G436600 chr5A 617173635 617175670 2035 True 2185 2185 86.461 1 2041 1 chr5A.!!$R3 2040
3 TraesCS5B01G436600 chr5A 617187800 617188665 865 True 1064 1064 89.208 1 851 1 chr5A.!!$R4 850
4 TraesCS5B01G436600 chr4A 12377457 12378017 560 False 335 335 78.596 1227 1759 1 chr4A.!!$F1 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
519 566 0.74299 CCCCTTTGATGCGCGAACTA 60.743 55.0 12.1 0.0 0.0 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1902 2037 0.110486 AAACCAGGCATTGTCTCGGT 59.89 50.0 6.58 6.58 0.0 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 50 2.981560 GAACACCCATGGCTGCACG 61.982 63.158 6.09 0.00 0.00 5.34
73 81 3.605486 ACGACGTTATTTTCTACTCGTGC 59.395 43.478 0.00 0.00 31.73 5.34
467 514 2.795389 GCCGACACGCCGTTATGAC 61.795 63.158 0.00 0.00 0.00 3.06
490 537 1.270550 GCTCCCATTGGACTTGTTGTG 59.729 52.381 3.62 0.00 35.03 3.33
495 542 3.366273 CCCATTGGACTTGTTGTGATTCG 60.366 47.826 3.62 0.00 0.00 3.34
497 544 3.961477 TTGGACTTGTTGTGATTCGTG 57.039 42.857 0.00 0.00 0.00 4.35
501 548 1.873591 ACTTGTTGTGATTCGTGCTCC 59.126 47.619 0.00 0.00 0.00 4.70
519 566 0.742990 CCCCTTTGATGCGCGAACTA 60.743 55.000 12.10 0.00 0.00 2.24
533 580 1.369091 GAACTATGCGTGGCACTGGG 61.369 60.000 16.72 0.93 43.04 4.45
543 592 1.380302 GGCACTGGGAATGGTCAGT 59.620 57.895 0.00 0.00 44.12 3.41
546 595 1.442769 CACTGGGAATGGTCAGTTCG 58.557 55.000 0.00 0.00 41.71 3.95
593 642 2.128035 GTTCTTGACACTGACAGACCG 58.872 52.381 10.08 0.00 0.00 4.79
664 719 1.881324 TGTCCATATGCATTCGCCATG 59.119 47.619 3.54 1.46 37.32 3.66
689 744 2.427506 GGTCAACTTCTCGCCAAATCT 58.572 47.619 0.00 0.00 0.00 2.40
892 947 6.149474 CCTGAAACATTCTTAACCACACTAGG 59.851 42.308 0.00 0.00 0.00 3.02
894 949 7.737869 TGAAACATTCTTAACCACACTAGGTA 58.262 34.615 0.00 0.00 42.25 3.08
895 950 8.380099 TGAAACATTCTTAACCACACTAGGTAT 58.620 33.333 0.00 0.00 42.25 2.73
896 951 9.880157 GAAACATTCTTAACCACACTAGGTATA 57.120 33.333 0.00 0.00 42.25 1.47
897 952 9.662947 AAACATTCTTAACCACACTAGGTATAC 57.337 33.333 0.00 0.00 42.25 1.47
898 953 8.370266 ACATTCTTAACCACACTAGGTATACA 57.630 34.615 5.01 0.00 42.25 2.29
899 954 8.255905 ACATTCTTAACCACACTAGGTATACAC 58.744 37.037 5.01 0.00 42.25 2.90
900 955 6.441093 TCTTAACCACACTAGGTATACACG 57.559 41.667 5.01 0.00 42.25 4.49
902 957 4.978083 AACCACACTAGGTATACACGAG 57.022 45.455 5.01 3.02 42.25 4.18
922 1004 5.480422 ACGAGACCCACATGCATATATAAGA 59.520 40.000 0.00 0.00 0.00 2.10
923 1005 5.807520 CGAGACCCACATGCATATATAAGAC 59.192 44.000 0.00 0.00 0.00 3.01
927 1009 4.173256 CCACATGCATATATAAGACGCGA 58.827 43.478 15.93 0.00 0.00 5.87
929 1011 5.220284 CCACATGCATATATAAGACGCGAAG 60.220 44.000 15.93 0.00 0.00 3.79
930 1012 4.864806 ACATGCATATATAAGACGCGAAGG 59.135 41.667 15.93 0.00 0.00 3.46
942 1024 4.914420 CGAAGGCGCGCGAGATCT 62.914 66.667 37.18 20.83 0.00 2.75
943 1025 3.326210 GAAGGCGCGCGAGATCTG 61.326 66.667 37.18 2.07 0.00 2.90
962 1044 3.658757 TGGCACAGTTTAATTTGCTCC 57.341 42.857 0.00 0.00 35.24 4.70
971 1053 8.116136 CACAGTTTAATTTGCTCCTTCAAAAAC 58.884 33.333 0.00 0.00 39.13 2.43
972 1054 8.040727 ACAGTTTAATTTGCTCCTTCAAAAACT 58.959 29.630 0.00 0.00 39.13 2.66
973 1055 8.330302 CAGTTTAATTTGCTCCTTCAAAAACTG 58.670 33.333 13.27 13.27 41.13 3.16
974 1056 8.040727 AGTTTAATTTGCTCCTTCAAAAACTGT 58.959 29.630 0.00 0.00 39.13 3.55
975 1057 9.308318 GTTTAATTTGCTCCTTCAAAAACTGTA 57.692 29.630 0.00 0.00 39.13 2.74
976 1058 8.865590 TTAATTTGCTCCTTCAAAAACTGTAC 57.134 30.769 0.00 0.00 39.13 2.90
977 1059 5.906113 TTTGCTCCTTCAAAAACTGTACA 57.094 34.783 0.00 0.00 33.47 2.90
979 1061 6.463995 TTGCTCCTTCAAAAACTGTACATT 57.536 33.333 0.00 0.00 0.00 2.71
980 1062 6.463995 TGCTCCTTCAAAAACTGTACATTT 57.536 33.333 0.00 0.00 0.00 2.32
981 1063 6.872920 TGCTCCTTCAAAAACTGTACATTTT 58.127 32.000 5.43 5.43 0.00 1.82
983 1065 8.470805 TGCTCCTTCAAAAACTGTACATTTTTA 58.529 29.630 20.30 6.98 37.19 1.52
984 1066 9.308318 GCTCCTTCAAAAACTGTACATTTTTAA 57.692 29.630 20.30 12.87 37.19 1.52
986 1068 9.810545 TCCTTCAAAAACTGTACATTTTTAAGG 57.189 29.630 27.53 27.53 37.19 2.69
987 1069 8.547894 CCTTCAAAAACTGTACATTTTTAAGGC 58.452 33.333 24.96 0.00 37.19 4.35
988 1070 7.687005 TCAAAAACTGTACATTTTTAAGGCG 57.313 32.000 20.30 11.47 37.19 5.52
990 1072 8.404000 TCAAAAACTGTACATTTTTAAGGCGTA 58.596 29.630 20.30 3.05 37.19 4.42
995 1077 7.636326 ACTGTACATTTTTAAGGCGTATATGC 58.364 34.615 8.51 8.51 0.00 3.14
1361 1447 2.179517 CGTCTGCAGAGGTCCGTC 59.820 66.667 24.86 8.07 0.00 4.79
1367 1453 0.037734 TGCAGAGGTCCGTCTCTACA 59.962 55.000 0.00 0.00 41.76 2.74
1368 1454 0.452585 GCAGAGGTCCGTCTCTACAC 59.547 60.000 0.00 0.00 41.76 2.90
1399 1494 6.645700 TTTCTTTTCACTGCACAATTTGAC 57.354 33.333 2.79 0.00 0.00 3.18
1404 1499 4.350368 TCACTGCACAATTTGACCTCTA 57.650 40.909 2.79 0.00 0.00 2.43
1434 1529 3.620488 AGCAAGTTCTTGTCTGTTCCAA 58.380 40.909 13.04 0.00 0.00 3.53
1436 1531 4.646492 AGCAAGTTCTTGTCTGTTCCAATT 59.354 37.500 13.04 0.00 0.00 2.32
1437 1532 5.127682 AGCAAGTTCTTGTCTGTTCCAATTT 59.872 36.000 13.04 0.00 0.00 1.82
1438 1533 5.812127 GCAAGTTCTTGTCTGTTCCAATTTT 59.188 36.000 13.04 0.00 0.00 1.82
1439 1534 6.313658 GCAAGTTCTTGTCTGTTCCAATTTTT 59.686 34.615 13.04 0.00 0.00 1.94
1507 1605 5.635120 ACTTAATTCTCCTTGCTTCACCTT 58.365 37.500 0.00 0.00 0.00 3.50
1508 1606 5.474876 ACTTAATTCTCCTTGCTTCACCTTG 59.525 40.000 0.00 0.00 0.00 3.61
1509 1607 3.795688 ATTCTCCTTGCTTCACCTTGA 57.204 42.857 0.00 0.00 0.00 3.02
1510 1608 2.550830 TCTCCTTGCTTCACCTTGAC 57.449 50.000 0.00 0.00 0.00 3.18
1511 1609 1.768275 TCTCCTTGCTTCACCTTGACA 59.232 47.619 0.00 0.00 0.00 3.58
1513 1611 3.152341 CTCCTTGCTTCACCTTGACATT 58.848 45.455 0.00 0.00 0.00 2.71
1514 1612 2.886523 TCCTTGCTTCACCTTGACATTG 59.113 45.455 0.00 0.00 0.00 2.82
1516 1614 0.961019 TGCTTCACCTTGACATTGCC 59.039 50.000 0.00 0.00 0.00 4.52
1517 1615 0.961019 GCTTCACCTTGACATTGCCA 59.039 50.000 0.00 0.00 0.00 4.92
1519 1617 2.416431 GCTTCACCTTGACATTGCCATC 60.416 50.000 0.00 0.00 0.00 3.51
1520 1618 2.583024 TCACCTTGACATTGCCATCA 57.417 45.000 0.00 0.00 0.00 3.07
1522 1620 3.229293 TCACCTTGACATTGCCATCAAA 58.771 40.909 0.00 0.00 34.52 2.69
1523 1621 3.256383 TCACCTTGACATTGCCATCAAAG 59.744 43.478 0.00 0.00 34.52 2.77
1524 1622 3.006110 CACCTTGACATTGCCATCAAAGT 59.994 43.478 0.00 0.00 36.90 2.66
1525 1623 3.642848 ACCTTGACATTGCCATCAAAGTT 59.357 39.130 0.00 0.00 34.65 2.66
1527 1625 4.262121 CCTTGACATTGCCATCAAAGTTCA 60.262 41.667 0.00 0.00 34.65 3.18
1558 1664 2.246719 ACTGAAGCTGACACTGAACC 57.753 50.000 0.00 0.00 0.00 3.62
1575 1681 1.607178 CCATGAACTTGCAGGGCCA 60.607 57.895 6.18 0.00 32.50 5.36
1673 1805 8.394121 GTTGCAAATTAATTTGTTGGTCTGAAA 58.606 29.630 31.43 10.93 46.63 2.69
1862 1994 0.101759 CGCATCCATTTTGGCTCTGG 59.898 55.000 0.00 0.00 37.47 3.86
1866 1998 3.385755 GCATCCATTTTGGCTCTGGTTAT 59.614 43.478 0.00 0.00 37.47 1.89
1902 2037 3.106827 TGGACTTGTAGGATGCTCATCA 58.893 45.455 11.49 0.00 39.54 3.07
1914 2049 0.654683 GCTCATCACCGAGACAATGC 59.345 55.000 0.00 0.00 34.79 3.56
1928 2063 1.602323 AATGCCTGGTTTTCGCCGA 60.602 52.632 0.00 0.00 0.00 5.54
1964 2102 4.314740 TGTTATTGTGTTGGTGGCTTTC 57.685 40.909 0.00 0.00 0.00 2.62
1973 2111 3.056328 GTGGCTTTCGGCTCACCC 61.056 66.667 0.00 0.00 41.46 4.61
1985 2123 2.774687 GGCTCACCCGTCTAAGAAAAA 58.225 47.619 0.00 0.00 0.00 1.94
2041 2179 4.749245 ACACGGTCATTTCTTGAATGTC 57.251 40.909 0.00 0.00 44.46 3.06
2042 2180 3.502211 ACACGGTCATTTCTTGAATGTCC 59.498 43.478 5.36 5.36 45.09 4.02
2046 2184 4.475944 GGTCATTTCTTGAATGTCCAACG 58.524 43.478 9.21 0.00 46.67 4.10
2047 2185 3.914364 GTCATTTCTTGAATGTCCAACGC 59.086 43.478 0.00 0.00 44.46 4.84
2048 2186 3.820467 TCATTTCTTGAATGTCCAACGCT 59.180 39.130 0.00 0.00 44.46 5.07
2049 2187 5.000591 TCATTTCTTGAATGTCCAACGCTA 58.999 37.500 0.00 0.00 44.46 4.26
2050 2188 4.742438 TTTCTTGAATGTCCAACGCTAC 57.258 40.909 0.00 0.00 0.00 3.58
2051 2189 2.695359 TCTTGAATGTCCAACGCTACC 58.305 47.619 0.00 0.00 0.00 3.18
2052 2190 2.301870 TCTTGAATGTCCAACGCTACCT 59.698 45.455 0.00 0.00 0.00 3.08
2053 2191 3.512329 TCTTGAATGTCCAACGCTACCTA 59.488 43.478 0.00 0.00 0.00 3.08
2054 2192 4.161565 TCTTGAATGTCCAACGCTACCTAT 59.838 41.667 0.00 0.00 0.00 2.57
2055 2193 4.481368 TGAATGTCCAACGCTACCTATT 57.519 40.909 0.00 0.00 0.00 1.73
2056 2194 4.839121 TGAATGTCCAACGCTACCTATTT 58.161 39.130 0.00 0.00 0.00 1.40
2057 2195 4.873827 TGAATGTCCAACGCTACCTATTTC 59.126 41.667 0.00 0.00 0.00 2.17
2058 2196 4.755266 ATGTCCAACGCTACCTATTTCT 57.245 40.909 0.00 0.00 0.00 2.52
2059 2197 3.857052 TGTCCAACGCTACCTATTTCTG 58.143 45.455 0.00 0.00 0.00 3.02
2060 2198 3.259876 TGTCCAACGCTACCTATTTCTGT 59.740 43.478 0.00 0.00 0.00 3.41
2061 2199 4.463539 TGTCCAACGCTACCTATTTCTGTA 59.536 41.667 0.00 0.00 0.00 2.74
2062 2200 5.047164 TGTCCAACGCTACCTATTTCTGTAA 60.047 40.000 0.00 0.00 0.00 2.41
2063 2201 6.047231 GTCCAACGCTACCTATTTCTGTAAT 58.953 40.000 0.00 0.00 0.00 1.89
2064 2202 6.537660 GTCCAACGCTACCTATTTCTGTAATT 59.462 38.462 0.00 0.00 0.00 1.40
2065 2203 7.707893 GTCCAACGCTACCTATTTCTGTAATTA 59.292 37.037 0.00 0.00 0.00 1.40
2066 2204 8.426489 TCCAACGCTACCTATTTCTGTAATTAT 58.574 33.333 0.00 0.00 0.00 1.28
2067 2205 9.701098 CCAACGCTACCTATTTCTGTAATTATA 57.299 33.333 0.00 0.00 0.00 0.98
2076 2214 9.672673 CCTATTTCTGTAATTATATCAGGGTGG 57.327 37.037 2.70 0.00 0.00 4.61
2079 2217 8.746052 TTTCTGTAATTATATCAGGGTGGTTG 57.254 34.615 2.70 0.00 0.00 3.77
2080 2218 7.684317 TCTGTAATTATATCAGGGTGGTTGA 57.316 36.000 2.70 0.00 0.00 3.18
2081 2219 8.096621 TCTGTAATTATATCAGGGTGGTTGAA 57.903 34.615 2.70 0.00 0.00 2.69
2082 2220 7.990886 TCTGTAATTATATCAGGGTGGTTGAAC 59.009 37.037 2.70 0.00 0.00 3.18
2083 2221 7.634718 TGTAATTATATCAGGGTGGTTGAACA 58.365 34.615 0.00 0.00 0.00 3.18
2084 2222 8.110271 TGTAATTATATCAGGGTGGTTGAACAA 58.890 33.333 0.00 0.00 0.00 2.83
2085 2223 8.962679 GTAATTATATCAGGGTGGTTGAACAAA 58.037 33.333 0.00 0.00 0.00 2.83
2086 2224 8.429237 AATTATATCAGGGTGGTTGAACAAAA 57.571 30.769 0.00 0.00 0.00 2.44
2087 2225 7.841282 TTATATCAGGGTGGTTGAACAAAAA 57.159 32.000 0.00 0.00 0.00 1.94
2088 2226 4.670896 ATCAGGGTGGTTGAACAAAAAG 57.329 40.909 0.00 0.00 0.00 2.27
2089 2227 2.167487 TCAGGGTGGTTGAACAAAAAGC 59.833 45.455 0.00 0.00 0.00 3.51
2090 2228 2.093764 CAGGGTGGTTGAACAAAAAGCA 60.094 45.455 0.00 0.00 32.91 3.91
2091 2229 2.569404 AGGGTGGTTGAACAAAAAGCAA 59.431 40.909 0.00 0.00 36.83 3.91
2092 2230 3.199727 AGGGTGGTTGAACAAAAAGCAAT 59.800 39.130 0.00 0.00 36.83 3.56
2093 2231 3.312146 GGGTGGTTGAACAAAAAGCAATG 59.688 43.478 0.00 0.00 36.83 2.82
2094 2232 3.312146 GGTGGTTGAACAAAAAGCAATGG 59.688 43.478 0.00 0.00 36.83 3.16
2095 2233 2.941720 TGGTTGAACAAAAAGCAATGGC 59.058 40.909 0.00 0.00 41.61 4.40
2105 2243 3.291611 GCAATGGCTGGGGAAGTG 58.708 61.111 0.00 0.00 36.96 3.16
2106 2244 3.010413 GCAATGGCTGGGGAAGTGC 62.010 63.158 0.00 0.00 36.96 4.40
2107 2245 2.037847 AATGGCTGGGGAAGTGCC 59.962 61.111 0.00 0.00 46.26 5.01
2108 2246 2.551413 AATGGCTGGGGAAGTGCCT 61.551 57.895 0.00 0.00 46.23 4.75
2109 2247 2.097978 AATGGCTGGGGAAGTGCCTT 62.098 55.000 0.00 0.00 46.23 4.35
2110 2248 2.097978 ATGGCTGGGGAAGTGCCTTT 62.098 55.000 0.00 0.00 46.23 3.11
2111 2249 1.979155 GGCTGGGGAAGTGCCTTTC 60.979 63.158 0.00 0.00 43.05 2.62
2112 2250 1.075659 GCTGGGGAAGTGCCTTTCT 59.924 57.895 0.00 0.00 36.66 2.52
2113 2251 0.328258 GCTGGGGAAGTGCCTTTCTA 59.672 55.000 0.00 0.00 36.66 2.10
2114 2252 1.271926 GCTGGGGAAGTGCCTTTCTAA 60.272 52.381 0.00 0.00 36.66 2.10
2115 2253 2.716217 CTGGGGAAGTGCCTTTCTAAG 58.284 52.381 0.00 0.00 36.66 2.18
2116 2254 1.271926 TGGGGAAGTGCCTTTCTAAGC 60.272 52.381 0.00 0.00 36.66 3.09
2117 2255 1.004862 GGGGAAGTGCCTTTCTAAGCT 59.995 52.381 0.00 0.00 36.66 3.74
2118 2256 2.360844 GGGAAGTGCCTTTCTAAGCTC 58.639 52.381 0.00 0.00 36.66 4.09
2119 2257 2.003301 GGAAGTGCCTTTCTAAGCTCG 58.997 52.381 0.00 0.00 0.00 5.03
2120 2258 2.353803 GGAAGTGCCTTTCTAAGCTCGA 60.354 50.000 0.00 0.00 0.00 4.04
2121 2259 2.663826 AGTGCCTTTCTAAGCTCGAG 57.336 50.000 8.45 8.45 0.00 4.04
2122 2260 1.003108 GTGCCTTTCTAAGCTCGAGC 58.997 55.000 30.01 30.01 42.49 5.03
2143 2281 4.785669 CTCAAATGAGCTCGGTATGAAC 57.214 45.455 9.64 0.00 35.13 3.18
2144 2282 4.183865 CTCAAATGAGCTCGGTATGAACA 58.816 43.478 9.64 0.00 35.13 3.18
2145 2283 4.574892 TCAAATGAGCTCGGTATGAACAA 58.425 39.130 9.64 0.00 0.00 2.83
2146 2284 5.185454 TCAAATGAGCTCGGTATGAACAAT 58.815 37.500 9.64 0.00 0.00 2.71
2147 2285 6.345298 TCAAATGAGCTCGGTATGAACAATA 58.655 36.000 9.64 0.00 0.00 1.90
2148 2286 6.821160 TCAAATGAGCTCGGTATGAACAATAA 59.179 34.615 9.64 0.00 0.00 1.40
2149 2287 7.335673 TCAAATGAGCTCGGTATGAACAATAAA 59.664 33.333 9.64 0.00 0.00 1.40
2150 2288 7.624360 AATGAGCTCGGTATGAACAATAAAA 57.376 32.000 9.64 0.00 0.00 1.52
2151 2289 7.807977 ATGAGCTCGGTATGAACAATAAAAT 57.192 32.000 9.64 0.00 0.00 1.82
2152 2290 7.246674 TGAGCTCGGTATGAACAATAAAATC 57.753 36.000 9.64 0.00 0.00 2.17
2153 2291 6.260050 TGAGCTCGGTATGAACAATAAAATCC 59.740 38.462 9.64 0.00 0.00 3.01
2154 2292 6.119536 AGCTCGGTATGAACAATAAAATCCA 58.880 36.000 0.00 0.00 0.00 3.41
2155 2293 6.601613 AGCTCGGTATGAACAATAAAATCCAA 59.398 34.615 0.00 0.00 0.00 3.53
2156 2294 7.122055 AGCTCGGTATGAACAATAAAATCCAAA 59.878 33.333 0.00 0.00 0.00 3.28
2157 2295 7.757624 GCTCGGTATGAACAATAAAATCCAAAA 59.242 33.333 0.00 0.00 0.00 2.44
2158 2296 9.632807 CTCGGTATGAACAATAAAATCCAAAAA 57.367 29.630 0.00 0.00 0.00 1.94
2159 2297 9.413048 TCGGTATGAACAATAAAATCCAAAAAC 57.587 29.630 0.00 0.00 0.00 2.43
2160 2298 9.197694 CGGTATGAACAATAAAATCCAAAAACA 57.802 29.630 0.00 0.00 0.00 2.83
2218 2356 9.706691 TTTTGTAACAAACATAAAAGGTTCACA 57.293 25.926 0.00 0.00 38.10 3.58
2219 2357 9.877178 TTTGTAACAAACATAAAAGGTTCACAT 57.123 25.926 0.00 0.00 38.10 3.21
2220 2358 8.864069 TGTAACAAACATAAAAGGTTCACATG 57.136 30.769 0.00 0.00 31.43 3.21
2221 2359 8.687242 TGTAACAAACATAAAAGGTTCACATGA 58.313 29.630 0.00 0.00 31.43 3.07
2222 2360 9.180678 GTAACAAACATAAAAGGTTCACATGAG 57.819 33.333 0.00 0.00 0.00 2.90
2223 2361 7.346751 ACAAACATAAAAGGTTCACATGAGT 57.653 32.000 0.00 0.00 0.00 3.41
2224 2362 7.425606 ACAAACATAAAAGGTTCACATGAGTC 58.574 34.615 0.00 0.00 0.00 3.36
2225 2363 7.068103 ACAAACATAAAAGGTTCACATGAGTCA 59.932 33.333 0.00 0.00 0.00 3.41
2226 2364 7.581213 AACATAAAAGGTTCACATGAGTCAA 57.419 32.000 0.00 0.00 0.00 3.18
2227 2365 7.581213 ACATAAAAGGTTCACATGAGTCAAA 57.419 32.000 0.00 0.00 0.00 2.69
2228 2366 8.181904 ACATAAAAGGTTCACATGAGTCAAAT 57.818 30.769 0.00 0.00 0.00 2.32
2229 2367 8.641541 ACATAAAAGGTTCACATGAGTCAAATT 58.358 29.630 0.00 0.00 0.00 1.82
2230 2368 9.480053 CATAAAAGGTTCACATGAGTCAAATTT 57.520 29.630 0.00 0.00 0.00 1.82
2232 2370 8.424274 AAAAGGTTCACATGAGTCAAATTTTC 57.576 30.769 0.00 0.00 0.00 2.29
2233 2371 6.966534 AGGTTCACATGAGTCAAATTTTCT 57.033 33.333 0.00 0.00 0.00 2.52
2234 2372 6.742109 AGGTTCACATGAGTCAAATTTTCTG 58.258 36.000 0.00 0.00 0.00 3.02
2235 2373 5.922544 GGTTCACATGAGTCAAATTTTCTGG 59.077 40.000 0.00 0.00 0.00 3.86
2236 2374 6.239008 GGTTCACATGAGTCAAATTTTCTGGA 60.239 38.462 0.00 0.00 0.00 3.86
2237 2375 7.373493 GTTCACATGAGTCAAATTTTCTGGAT 58.627 34.615 0.00 0.00 0.00 3.41
2238 2376 6.916440 TCACATGAGTCAAATTTTCTGGATG 58.084 36.000 0.00 0.00 0.00 3.51
2239 2377 6.071784 TCACATGAGTCAAATTTTCTGGATGG 60.072 38.462 0.00 0.00 0.00 3.51
2240 2378 6.012113 ACATGAGTCAAATTTTCTGGATGGA 58.988 36.000 0.00 0.00 0.00 3.41
2241 2379 6.494491 ACATGAGTCAAATTTTCTGGATGGAA 59.506 34.615 0.00 0.00 0.00 3.53
2242 2380 7.179694 ACATGAGTCAAATTTTCTGGATGGAAT 59.820 33.333 0.00 0.00 0.00 3.01
2243 2381 7.161773 TGAGTCAAATTTTCTGGATGGAATC 57.838 36.000 0.00 0.00 44.55 2.52
2259 2397 6.814954 ATGGAATCACATTAGTAGAGGTGT 57.185 37.500 0.00 0.00 33.17 4.16
2260 2398 5.977635 TGGAATCACATTAGTAGAGGTGTG 58.022 41.667 0.00 0.00 42.40 3.82
2261 2399 5.104941 TGGAATCACATTAGTAGAGGTGTGG 60.105 44.000 4.73 0.00 41.60 4.17
2262 2400 5.359194 AATCACATTAGTAGAGGTGTGGG 57.641 43.478 4.73 0.00 41.60 4.61
2263 2401 2.500098 TCACATTAGTAGAGGTGTGGGC 59.500 50.000 4.73 0.00 41.60 5.36
2264 2402 2.236146 CACATTAGTAGAGGTGTGGGCA 59.764 50.000 0.00 0.00 38.56 5.36
2265 2403 2.910319 ACATTAGTAGAGGTGTGGGCAA 59.090 45.455 0.00 0.00 0.00 4.52
2266 2404 3.329520 ACATTAGTAGAGGTGTGGGCAAA 59.670 43.478 0.00 0.00 0.00 3.68
2267 2405 4.202524 ACATTAGTAGAGGTGTGGGCAAAA 60.203 41.667 0.00 0.00 0.00 2.44
2268 2406 4.440826 TTAGTAGAGGTGTGGGCAAAAA 57.559 40.909 0.00 0.00 0.00 1.94
2269 2407 2.583143 AGTAGAGGTGTGGGCAAAAAC 58.417 47.619 0.00 0.00 0.00 2.43
2270 2408 2.092103 AGTAGAGGTGTGGGCAAAAACA 60.092 45.455 0.00 0.00 0.00 2.83
2271 2409 2.086610 AGAGGTGTGGGCAAAAACAT 57.913 45.000 0.00 0.00 0.00 2.71
2272 2410 1.688197 AGAGGTGTGGGCAAAAACATG 59.312 47.619 0.00 0.00 0.00 3.21
2273 2411 1.412343 GAGGTGTGGGCAAAAACATGT 59.588 47.619 0.00 0.00 0.00 3.21
2274 2412 1.412343 AGGTGTGGGCAAAAACATGTC 59.588 47.619 0.00 0.00 0.00 3.06
2275 2413 1.137872 GGTGTGGGCAAAAACATGTCA 59.862 47.619 0.00 0.00 0.00 3.58
2276 2414 2.472816 GTGTGGGCAAAAACATGTCAG 58.527 47.619 0.00 0.00 0.00 3.51
2277 2415 2.100584 GTGTGGGCAAAAACATGTCAGA 59.899 45.455 0.00 0.00 0.00 3.27
2278 2416 2.964464 TGTGGGCAAAAACATGTCAGAT 59.036 40.909 0.00 0.00 0.00 2.90
2279 2417 4.022416 GTGTGGGCAAAAACATGTCAGATA 60.022 41.667 0.00 0.00 0.00 1.98
2280 2418 4.771577 TGTGGGCAAAAACATGTCAGATAT 59.228 37.500 0.00 0.00 0.00 1.63
2281 2419 5.105797 TGTGGGCAAAAACATGTCAGATATC 60.106 40.000 0.00 0.00 0.00 1.63
2282 2420 5.126061 GTGGGCAAAAACATGTCAGATATCT 59.874 40.000 0.00 0.00 0.00 1.98
2283 2421 5.125900 TGGGCAAAAACATGTCAGATATCTG 59.874 40.000 24.32 24.32 45.08 2.90
2294 2432 2.682594 CAGATATCTGAGGTGTGGGGA 58.317 52.381 25.78 0.00 46.59 4.81
2295 2433 3.041211 CAGATATCTGAGGTGTGGGGAA 58.959 50.000 25.78 0.00 46.59 3.97
2296 2434 3.455910 CAGATATCTGAGGTGTGGGGAAA 59.544 47.826 25.78 0.00 46.59 3.13
2297 2435 4.080356 CAGATATCTGAGGTGTGGGGAAAA 60.080 45.833 25.78 0.00 46.59 2.29
2298 2436 4.540099 AGATATCTGAGGTGTGGGGAAAAA 59.460 41.667 3.89 0.00 0.00 1.94
2339 2477 7.107834 TGATTCAAATCACGAAATTTTGCAG 57.892 32.000 5.27 0.00 40.32 4.41
2340 2478 6.922407 TGATTCAAATCACGAAATTTTGCAGA 59.078 30.769 5.27 4.68 40.32 4.26
2341 2479 6.509317 TTCAAATCACGAAATTTTGCAGAC 57.491 33.333 5.27 0.00 31.88 3.51
2342 2480 4.674662 TCAAATCACGAAATTTTGCAGACG 59.325 37.500 5.27 0.00 31.88 4.18
2343 2481 3.896648 ATCACGAAATTTTGCAGACGT 57.103 38.095 5.27 0.00 34.40 4.34
2344 2482 5.351233 AATCACGAAATTTTGCAGACGTA 57.649 34.783 5.27 0.00 32.89 3.57
2345 2483 4.797693 TCACGAAATTTTGCAGACGTAA 57.202 36.364 5.27 0.00 32.89 3.18
2346 2484 5.351233 TCACGAAATTTTGCAGACGTAAT 57.649 34.783 5.27 0.00 32.89 1.89
2347 2485 5.753744 TCACGAAATTTTGCAGACGTAATT 58.246 33.333 5.27 0.00 32.89 1.40
2348 2486 6.889494 TCACGAAATTTTGCAGACGTAATTA 58.111 32.000 5.27 0.00 32.89 1.40
2349 2487 6.793203 TCACGAAATTTTGCAGACGTAATTAC 59.207 34.615 5.47 5.47 32.89 1.89
2350 2488 6.795114 CACGAAATTTTGCAGACGTAATTACT 59.205 34.615 13.56 1.10 32.89 2.24
2351 2489 7.006210 CACGAAATTTTGCAGACGTAATTACTC 59.994 37.037 13.56 9.74 32.89 2.59
2352 2490 7.012943 CGAAATTTTGCAGACGTAATTACTCA 58.987 34.615 13.56 1.68 0.00 3.41
2353 2491 7.532546 CGAAATTTTGCAGACGTAATTACTCAA 59.467 33.333 13.56 6.93 0.00 3.02
2354 2492 9.341899 GAAATTTTGCAGACGTAATTACTCAAT 57.658 29.630 13.56 3.91 0.00 2.57
2355 2493 8.673626 AATTTTGCAGACGTAATTACTCAATG 57.326 30.769 13.56 7.98 0.00 2.82
2356 2494 6.795098 TTTGCAGACGTAATTACTCAATGT 57.205 33.333 13.56 3.65 0.00 2.71
2357 2495 6.795098 TTGCAGACGTAATTACTCAATGTT 57.205 33.333 13.56 0.00 0.00 2.71
2358 2496 6.795098 TGCAGACGTAATTACTCAATGTTT 57.205 33.333 13.56 0.00 0.00 2.83
2359 2497 6.598525 TGCAGACGTAATTACTCAATGTTTG 58.401 36.000 13.56 9.57 0.00 2.93
2360 2498 6.203915 TGCAGACGTAATTACTCAATGTTTGT 59.796 34.615 13.56 0.89 0.00 2.83
2361 2499 7.075741 GCAGACGTAATTACTCAATGTTTGTT 58.924 34.615 13.56 0.00 0.00 2.83
2362 2500 7.059488 GCAGACGTAATTACTCAATGTTTGTTG 59.941 37.037 13.56 3.59 0.00 3.33
2363 2501 7.059488 CAGACGTAATTACTCAATGTTTGTTGC 59.941 37.037 13.56 0.00 0.00 4.17
2364 2502 6.966021 ACGTAATTACTCAATGTTTGTTGCT 58.034 32.000 13.56 0.00 0.00 3.91
2365 2503 8.090250 ACGTAATTACTCAATGTTTGTTGCTA 57.910 30.769 13.56 0.00 0.00 3.49
2366 2504 8.561212 ACGTAATTACTCAATGTTTGTTGCTAA 58.439 29.630 13.56 0.00 0.00 3.09
2367 2505 9.554724 CGTAATTACTCAATGTTTGTTGCTAAT 57.445 29.630 13.56 0.00 0.00 1.73
2370 2508 9.979578 AATTACTCAATGTTTGTTGCTAATTCA 57.020 25.926 0.00 0.00 0.00 2.57
2371 2509 9.630098 ATTACTCAATGTTTGTTGCTAATTCAG 57.370 29.630 0.00 0.00 0.00 3.02
2372 2510 7.275888 ACTCAATGTTTGTTGCTAATTCAGA 57.724 32.000 0.00 0.00 0.00 3.27
2373 2511 7.889469 ACTCAATGTTTGTTGCTAATTCAGAT 58.111 30.769 0.00 0.00 0.00 2.90
2374 2512 8.362639 ACTCAATGTTTGTTGCTAATTCAGATT 58.637 29.630 0.00 0.00 0.00 2.40
2375 2513 9.199982 CTCAATGTTTGTTGCTAATTCAGATTT 57.800 29.630 0.00 0.00 0.00 2.17
2376 2514 9.545105 TCAATGTTTGTTGCTAATTCAGATTTT 57.455 25.926 0.00 0.00 0.00 1.82
2417 2555 2.519013 ACTTTCCCAGTTCATCCAAGC 58.481 47.619 0.00 0.00 27.32 4.01
2418 2556 2.108952 ACTTTCCCAGTTCATCCAAGCT 59.891 45.455 0.00 0.00 27.32 3.74
2419 2557 2.496899 TTCCCAGTTCATCCAAGCTC 57.503 50.000 0.00 0.00 0.00 4.09
2420 2558 1.361204 TCCCAGTTCATCCAAGCTCA 58.639 50.000 0.00 0.00 0.00 4.26
2421 2559 1.918262 TCCCAGTTCATCCAAGCTCAT 59.082 47.619 0.00 0.00 0.00 2.90
2422 2560 3.114606 TCCCAGTTCATCCAAGCTCATA 58.885 45.455 0.00 0.00 0.00 2.15
2423 2561 3.718434 TCCCAGTTCATCCAAGCTCATAT 59.282 43.478 0.00 0.00 0.00 1.78
2424 2562 4.166725 TCCCAGTTCATCCAAGCTCATATT 59.833 41.667 0.00 0.00 0.00 1.28
2425 2563 4.277672 CCCAGTTCATCCAAGCTCATATTG 59.722 45.833 0.00 0.00 0.00 1.90
2426 2564 4.885907 CCAGTTCATCCAAGCTCATATTGT 59.114 41.667 0.00 0.00 0.00 2.71
2427 2565 5.359009 CCAGTTCATCCAAGCTCATATTGTT 59.641 40.000 0.00 0.00 0.00 2.83
2428 2566 6.127535 CCAGTTCATCCAAGCTCATATTGTTT 60.128 38.462 0.00 0.00 0.00 2.83
2429 2567 6.750501 CAGTTCATCCAAGCTCATATTGTTTG 59.249 38.462 0.00 0.00 0.00 2.93
2430 2568 5.252969 TCATCCAAGCTCATATTGTTTGC 57.747 39.130 0.00 0.00 0.00 3.68
2431 2569 3.763097 TCCAAGCTCATATTGTTTGCG 57.237 42.857 0.00 0.00 0.00 4.85
2432 2570 3.081061 TCCAAGCTCATATTGTTTGCGT 58.919 40.909 0.00 0.00 0.00 5.24
2433 2571 3.119884 TCCAAGCTCATATTGTTTGCGTG 60.120 43.478 0.00 0.00 34.06 5.34
2434 2572 2.549633 AGCTCATATTGTTTGCGTGC 57.450 45.000 0.00 0.00 0.00 5.34
2435 2573 1.133025 AGCTCATATTGTTTGCGTGCC 59.867 47.619 0.00 0.00 0.00 5.01
2436 2574 1.135431 GCTCATATTGTTTGCGTGCCA 60.135 47.619 0.00 0.00 0.00 4.92
2437 2575 2.670789 GCTCATATTGTTTGCGTGCCAA 60.671 45.455 0.00 0.00 0.00 4.52
2438 2576 2.916716 CTCATATTGTTTGCGTGCCAAC 59.083 45.455 2.13 2.13 31.97 3.77
2439 2577 2.294512 TCATATTGTTTGCGTGCCAACA 59.705 40.909 7.34 7.34 31.97 3.33
2440 2578 2.414058 TATTGTTTGCGTGCCAACAG 57.586 45.000 10.76 0.00 31.97 3.16
2441 2579 0.875474 ATTGTTTGCGTGCCAACAGC 60.875 50.000 10.76 0.00 44.14 4.40
2442 2580 1.943116 TTGTTTGCGTGCCAACAGCT 61.943 50.000 10.76 0.00 44.23 4.24
2443 2581 1.945662 GTTTGCGTGCCAACAGCTG 60.946 57.895 13.48 13.48 44.23 4.24
2444 2582 3.771568 TTTGCGTGCCAACAGCTGC 62.772 57.895 15.27 0.00 44.23 5.25
2446 2584 4.047059 GCGTGCCAACAGCTGCAT 62.047 61.111 15.27 0.00 44.23 3.96
2447 2585 2.177531 CGTGCCAACAGCTGCATC 59.822 61.111 15.27 1.01 44.23 3.91
2448 2586 2.330372 CGTGCCAACAGCTGCATCT 61.330 57.895 15.27 0.00 44.23 2.90
2449 2587 1.020861 CGTGCCAACAGCTGCATCTA 61.021 55.000 15.27 0.00 44.23 1.98
2450 2588 0.449388 GTGCCAACAGCTGCATCTAC 59.551 55.000 15.27 4.40 44.23 2.59
2451 2589 1.020861 TGCCAACAGCTGCATCTACG 61.021 55.000 15.27 0.00 44.23 3.51
2452 2590 1.021390 GCCAACAGCTGCATCTACGT 61.021 55.000 15.27 0.00 38.99 3.57
2453 2591 1.002366 CCAACAGCTGCATCTACGTC 58.998 55.000 15.27 0.00 0.00 4.34
2454 2592 0.642291 CAACAGCTGCATCTACGTCG 59.358 55.000 15.27 0.00 0.00 5.12
2455 2593 0.243907 AACAGCTGCATCTACGTCGT 59.756 50.000 15.27 2.21 0.00 4.34
2456 2594 0.243907 ACAGCTGCATCTACGTCGTT 59.756 50.000 15.27 0.00 0.00 3.85
2457 2595 0.642291 CAGCTGCATCTACGTCGTTG 59.358 55.000 1.78 0.77 0.00 4.10
2458 2596 0.243907 AGCTGCATCTACGTCGTTGT 59.756 50.000 1.78 0.00 0.00 3.32
2459 2597 0.366871 GCTGCATCTACGTCGTTGTG 59.633 55.000 1.78 4.30 0.00 3.33
2460 2598 1.698165 CTGCATCTACGTCGTTGTGT 58.302 50.000 1.78 0.00 0.00 3.72
2461 2599 1.649171 CTGCATCTACGTCGTTGTGTC 59.351 52.381 1.78 1.32 0.00 3.67
2462 2600 1.001158 TGCATCTACGTCGTTGTGTCA 60.001 47.619 1.78 3.58 0.00 3.58
2463 2601 2.259618 GCATCTACGTCGTTGTGTCAT 58.740 47.619 1.78 0.00 0.00 3.06
2464 2602 2.279136 GCATCTACGTCGTTGTGTCATC 59.721 50.000 1.78 0.00 0.00 2.92
2465 2603 2.236741 TCTACGTCGTTGTGTCATCG 57.763 50.000 1.78 0.00 0.00 3.84
2466 2604 1.135888 TCTACGTCGTTGTGTCATCGG 60.136 52.381 1.78 0.00 0.00 4.18
2467 2605 0.873721 TACGTCGTTGTGTCATCGGA 59.126 50.000 1.78 0.00 0.00 4.55
2468 2606 0.242825 ACGTCGTTGTGTCATCGGAT 59.757 50.000 0.00 0.00 0.00 4.18
2469 2607 1.336517 ACGTCGTTGTGTCATCGGATT 60.337 47.619 0.00 0.00 0.00 3.01
2470 2608 1.724623 CGTCGTTGTGTCATCGGATTT 59.275 47.619 0.00 0.00 0.00 2.17
2471 2609 2.918600 CGTCGTTGTGTCATCGGATTTA 59.081 45.455 0.00 0.00 0.00 1.40
2472 2610 3.001070 CGTCGTTGTGTCATCGGATTTAG 60.001 47.826 0.00 0.00 0.00 1.85
2473 2611 4.171005 GTCGTTGTGTCATCGGATTTAGA 58.829 43.478 0.00 0.00 0.00 2.10
2474 2612 4.804139 GTCGTTGTGTCATCGGATTTAGAT 59.196 41.667 0.00 0.00 0.00 1.98
2475 2613 5.041287 TCGTTGTGTCATCGGATTTAGATC 58.959 41.667 0.00 0.00 0.00 2.75
2476 2614 5.043903 CGTTGTGTCATCGGATTTAGATCT 58.956 41.667 0.00 0.00 32.66 2.75
2477 2615 5.051441 CGTTGTGTCATCGGATTTAGATCTG 60.051 44.000 5.18 0.00 39.57 2.90
2478 2616 4.948847 TGTGTCATCGGATTTAGATCTGG 58.051 43.478 5.18 0.00 38.87 3.86
2479 2617 4.649218 TGTGTCATCGGATTTAGATCTGGA 59.351 41.667 5.18 0.00 38.87 3.86
2480 2618 5.128663 TGTGTCATCGGATTTAGATCTGGAA 59.871 40.000 5.18 0.35 38.87 3.53
2481 2619 6.049149 GTGTCATCGGATTTAGATCTGGAAA 58.951 40.000 5.18 0.00 38.87 3.13
2482 2620 6.201806 GTGTCATCGGATTTAGATCTGGAAAG 59.798 42.308 5.18 0.00 38.87 2.62
2483 2621 5.178438 GTCATCGGATTTAGATCTGGAAAGC 59.822 44.000 5.18 1.35 38.87 3.51
2484 2622 4.753516 TCGGATTTAGATCTGGAAAGCA 57.246 40.909 5.18 0.00 38.87 3.91
2485 2623 4.442706 TCGGATTTAGATCTGGAAAGCAC 58.557 43.478 5.18 0.00 38.87 4.40
2486 2624 3.561725 CGGATTTAGATCTGGAAAGCACC 59.438 47.826 5.18 4.06 35.41 5.01
2487 2625 4.684485 CGGATTTAGATCTGGAAAGCACCT 60.684 45.833 5.18 0.00 35.41 4.00
2488 2626 4.819088 GGATTTAGATCTGGAAAGCACCTC 59.181 45.833 5.18 0.00 32.66 3.85
2489 2627 4.908601 TTTAGATCTGGAAAGCACCTCA 57.091 40.909 5.18 0.00 0.00 3.86
2490 2628 5.441718 TTTAGATCTGGAAAGCACCTCAT 57.558 39.130 5.18 0.00 0.00 2.90
2491 2629 5.441718 TTAGATCTGGAAAGCACCTCATT 57.558 39.130 5.18 0.00 0.00 2.57
2492 2630 3.883669 AGATCTGGAAAGCACCTCATTC 58.116 45.455 0.00 0.00 0.00 2.67
2493 2631 2.496899 TCTGGAAAGCACCTCATTCC 57.503 50.000 0.00 0.00 41.64 3.01
2494 2632 1.704628 TCTGGAAAGCACCTCATTCCA 59.295 47.619 6.33 6.33 46.77 3.53
2495 2633 2.673775 TGGAAAGCACCTCATTCCAA 57.326 45.000 4.09 0.00 46.19 3.53
2496 2634 2.956132 TGGAAAGCACCTCATTCCAAA 58.044 42.857 4.09 0.00 46.19 3.28
2497 2635 3.303938 TGGAAAGCACCTCATTCCAAAA 58.696 40.909 4.09 0.00 46.19 2.44
2498 2636 3.069443 TGGAAAGCACCTCATTCCAAAAC 59.931 43.478 4.09 0.00 46.19 2.43
2499 2637 3.069443 GGAAAGCACCTCATTCCAAAACA 59.931 43.478 0.00 0.00 41.10 2.83
2500 2638 4.442753 GGAAAGCACCTCATTCCAAAACAA 60.443 41.667 0.00 0.00 41.10 2.83
2501 2639 4.751767 AAGCACCTCATTCCAAAACAAA 57.248 36.364 0.00 0.00 0.00 2.83
2502 2640 4.751767 AGCACCTCATTCCAAAACAAAA 57.248 36.364 0.00 0.00 0.00 2.44
2503 2641 5.096443 AGCACCTCATTCCAAAACAAAAA 57.904 34.783 0.00 0.00 0.00 1.94
2546 2684 9.990868 ACTTGTTTTGTCCTAAATAATAGGGAT 57.009 29.630 1.89 0.00 35.45 3.85
2563 2701 5.391312 AGGGATAACTTGTTCAAACATGC 57.609 39.130 8.26 0.00 38.95 4.06
2564 2702 4.832266 AGGGATAACTTGTTCAAACATGCA 59.168 37.500 8.26 0.00 38.95 3.96
2565 2703 5.481473 AGGGATAACTTGTTCAAACATGCAT 59.519 36.000 0.00 0.00 38.95 3.96
2566 2704 5.577945 GGGATAACTTGTTCAAACATGCATG 59.422 40.000 25.09 25.09 38.95 4.06
2567 2705 6.389091 GGATAACTTGTTCAAACATGCATGA 58.611 36.000 32.75 8.86 38.95 3.07
2568 2706 6.867816 GGATAACTTGTTCAAACATGCATGAA 59.132 34.615 32.75 14.94 38.95 2.57
2581 2719 4.434520 CATGCATGAACATGGCATAAACA 58.565 39.130 22.59 0.72 43.05 2.83
2582 2720 4.112716 TGCATGAACATGGCATAAACAG 57.887 40.909 15.15 0.00 39.16 3.16
2583 2721 3.762823 TGCATGAACATGGCATAAACAGA 59.237 39.130 15.15 0.00 39.16 3.41
2584 2722 4.403113 TGCATGAACATGGCATAAACAGAT 59.597 37.500 15.15 0.00 39.16 2.90
2585 2723 4.980434 GCATGAACATGGCATAAACAGATC 59.020 41.667 15.15 0.00 39.16 2.75
2586 2724 5.526115 CATGAACATGGCATAAACAGATCC 58.474 41.667 0.00 0.00 35.24 3.36
2587 2725 4.598022 TGAACATGGCATAAACAGATCCA 58.402 39.130 0.00 0.00 0.00 3.41
2588 2726 5.202765 TGAACATGGCATAAACAGATCCAT 58.797 37.500 0.00 0.00 37.99 3.41
2589 2727 5.657745 TGAACATGGCATAAACAGATCCATT 59.342 36.000 0.00 0.00 35.51 3.16
2590 2728 5.524971 ACATGGCATAAACAGATCCATTG 57.475 39.130 0.00 0.00 35.51 2.82
2591 2729 4.342951 ACATGGCATAAACAGATCCATTGG 59.657 41.667 0.00 0.00 35.51 3.16
2592 2730 4.248174 TGGCATAAACAGATCCATTGGA 57.752 40.909 8.08 8.08 35.55 3.53
2593 2731 4.806892 TGGCATAAACAGATCCATTGGAT 58.193 39.130 18.23 18.23 46.28 3.41
2594 2732 5.210430 TGGCATAAACAGATCCATTGGATT 58.790 37.500 19.13 6.68 43.27 3.01
2595 2733 5.662208 TGGCATAAACAGATCCATTGGATTT 59.338 36.000 19.13 11.18 43.27 2.17
2596 2734 6.156602 TGGCATAAACAGATCCATTGGATTTT 59.843 34.615 19.13 16.69 43.27 1.82
2597 2735 7.049754 GGCATAAACAGATCCATTGGATTTTT 58.950 34.615 19.13 18.34 43.27 1.94
2598 2736 7.225341 GGCATAAACAGATCCATTGGATTTTTC 59.775 37.037 19.13 7.71 43.27 2.29
2599 2737 7.983484 GCATAAACAGATCCATTGGATTTTTCT 59.017 33.333 19.13 9.90 43.27 2.52
2600 2738 9.309516 CATAAACAGATCCATTGGATTTTTCTG 57.690 33.333 23.48 23.48 43.27 3.02
2601 2739 7.543359 AAACAGATCCATTGGATTTTTCTGA 57.457 32.000 28.58 0.11 43.27 3.27
2602 2740 7.729124 AACAGATCCATTGGATTTTTCTGAT 57.271 32.000 28.58 19.67 43.27 2.90
2603 2741 8.827832 AACAGATCCATTGGATTTTTCTGATA 57.172 30.769 28.58 0.00 43.27 2.15
2604 2742 9.430399 AACAGATCCATTGGATTTTTCTGATAT 57.570 29.630 28.58 16.91 43.27 1.63
2622 2760 8.791327 TCTGATATAACTTTTCTTCATGTGCA 57.209 30.769 0.00 0.00 0.00 4.57
2623 2761 9.399797 TCTGATATAACTTTTCTTCATGTGCAT 57.600 29.630 0.00 0.00 0.00 3.96
2629 2767 6.594788 ACTTTTCTTCATGTGCATTATGGT 57.405 33.333 12.28 0.93 0.00 3.55
2630 2768 6.996509 ACTTTTCTTCATGTGCATTATGGTT 58.003 32.000 12.28 0.00 0.00 3.67
2631 2769 7.444299 ACTTTTCTTCATGTGCATTATGGTTT 58.556 30.769 12.28 0.00 0.00 3.27
2632 2770 8.584157 ACTTTTCTTCATGTGCATTATGGTTTA 58.416 29.630 12.28 0.00 0.00 2.01
2633 2771 9.421806 CTTTTCTTCATGTGCATTATGGTTTAA 57.578 29.630 12.28 1.63 0.00 1.52
2634 2772 9.941325 TTTTCTTCATGTGCATTATGGTTTAAT 57.059 25.926 12.28 0.00 0.00 1.40
2635 2773 9.941325 TTTCTTCATGTGCATTATGGTTTAATT 57.059 25.926 12.28 0.00 0.00 1.40
2636 2774 9.941325 TTCTTCATGTGCATTATGGTTTAATTT 57.059 25.926 12.28 0.00 0.00 1.82
2637 2775 9.585099 TCTTCATGTGCATTATGGTTTAATTTC 57.415 29.630 12.28 0.00 0.00 2.17
2638 2776 9.590451 CTTCATGTGCATTATGGTTTAATTTCT 57.410 29.630 12.28 0.00 0.00 2.52
2696 2834 9.246670 ACAAATAAGTCATTTCTGATTCATCCA 57.753 29.630 0.00 0.00 34.49 3.41
2784 2922 8.621532 TTTTCTTCATGTGAGTTATTAGCAGT 57.378 30.769 0.00 0.00 0.00 4.40
2785 2923 7.601073 TTCTTCATGTGAGTTATTAGCAGTG 57.399 36.000 0.00 0.00 0.00 3.66
2786 2924 6.108687 TCTTCATGTGAGTTATTAGCAGTGG 58.891 40.000 0.00 0.00 0.00 4.00
2787 2925 4.769688 TCATGTGAGTTATTAGCAGTGGG 58.230 43.478 0.00 0.00 0.00 4.61
2788 2926 3.627395 TGTGAGTTATTAGCAGTGGGG 57.373 47.619 0.00 0.00 0.00 4.96
2789 2927 2.289565 GTGAGTTATTAGCAGTGGGGC 58.710 52.381 0.00 0.00 0.00 5.80
2790 2928 1.211949 TGAGTTATTAGCAGTGGGGCC 59.788 52.381 0.00 0.00 0.00 5.80
2791 2929 0.551396 AGTTATTAGCAGTGGGGCCC 59.449 55.000 18.17 18.17 0.00 5.80
2792 2930 0.551396 GTTATTAGCAGTGGGGCCCT 59.449 55.000 25.93 5.10 0.00 5.19
2793 2931 0.843984 TTATTAGCAGTGGGGCCCTC 59.156 55.000 25.93 21.32 0.00 4.30
2794 2932 1.060163 TATTAGCAGTGGGGCCCTCC 61.060 60.000 25.93 14.56 0.00 4.30
2795 2933 2.865183 ATTAGCAGTGGGGCCCTCCT 62.865 60.000 25.93 16.79 35.33 3.69
2796 2934 3.579451 TAGCAGTGGGGCCCTCCTT 62.579 63.158 25.93 10.95 35.33 3.36
2797 2935 4.748144 GCAGTGGGGCCCTCCTTG 62.748 72.222 25.93 16.23 35.33 3.61
2798 2936 4.052518 CAGTGGGGCCCTCCTTGG 62.053 72.222 25.93 6.47 35.33 3.61
2799 2937 4.617595 AGTGGGGCCCTCCTTGGT 62.618 66.667 25.93 0.02 35.33 3.67
2800 2938 4.366684 GTGGGGCCCTCCTTGGTG 62.367 72.222 25.93 0.00 35.33 4.17
2801 2939 4.938756 TGGGGCCCTCCTTGGTGT 62.939 66.667 25.93 0.00 35.33 4.16
2802 2940 3.590574 GGGGCCCTCCTTGGTGTT 61.591 66.667 24.38 0.00 35.33 3.32
2803 2941 2.526110 GGGCCCTCCTTGGTGTTT 59.474 61.111 17.04 0.00 0.00 2.83
2804 2942 1.771646 GGGCCCTCCTTGGTGTTTA 59.228 57.895 17.04 0.00 0.00 2.01
2805 2943 0.611062 GGGCCCTCCTTGGTGTTTAC 60.611 60.000 17.04 0.00 0.00 2.01
2825 2963 7.786030 GTTTACCTAGGGGTTAACTAACTAGG 58.214 42.308 28.94 28.94 45.93 3.02
2826 2964 5.558856 ACCTAGGGGTTAACTAACTAGGT 57.441 43.478 29.75 29.75 44.73 3.08
2827 2965 5.920347 ACCTAGGGGTTAACTAACTAGGTT 58.080 41.667 29.75 21.30 44.73 3.50
2828 2966 7.056522 ACCTAGGGGTTAACTAACTAGGTTA 57.943 40.000 29.75 7.05 44.73 2.85
2829 2967 7.128751 ACCTAGGGGTTAACTAACTAGGTTAG 58.871 42.308 29.75 17.76 45.35 2.34
2847 2985 9.530633 CTAGGTTAGTTAGTGCTAATTAACAGG 57.469 37.037 24.94 16.11 43.76 4.00
2848 2986 6.822170 AGGTTAGTTAGTGCTAATTAACAGGC 59.178 38.462 24.94 15.19 43.76 4.85
2849 2987 6.037940 GGTTAGTTAGTGCTAATTAACAGGCC 59.962 42.308 24.94 0.00 43.76 5.19
2850 2988 5.174037 AGTTAGTGCTAATTAACAGGCCA 57.826 39.130 5.01 0.00 32.41 5.36
2851 2989 5.755849 AGTTAGTGCTAATTAACAGGCCAT 58.244 37.500 5.01 0.00 32.41 4.40
2852 2990 5.823045 AGTTAGTGCTAATTAACAGGCCATC 59.177 40.000 5.01 0.00 32.41 3.51
2853 2991 3.555966 AGTGCTAATTAACAGGCCATCC 58.444 45.455 5.01 0.00 0.00 3.51
2854 2992 3.203040 AGTGCTAATTAACAGGCCATCCT 59.797 43.478 5.01 0.00 45.66 3.24
2855 2993 4.412199 AGTGCTAATTAACAGGCCATCCTA 59.588 41.667 5.01 0.00 41.93 2.94
2856 2994 5.073691 AGTGCTAATTAACAGGCCATCCTAT 59.926 40.000 5.01 0.00 41.93 2.57
2857 2995 5.182001 GTGCTAATTAACAGGCCATCCTATG 59.818 44.000 5.01 0.00 41.93 2.23
2858 2996 5.073008 TGCTAATTAACAGGCCATCCTATGA 59.927 40.000 5.01 0.00 41.93 2.15
2859 2997 5.412904 GCTAATTAACAGGCCATCCTATGAC 59.587 44.000 5.01 0.00 41.93 3.06
2860 2998 3.857157 TTAACAGGCCATCCTATGACC 57.143 47.619 5.01 0.00 41.93 4.02
2861 2999 1.595311 AACAGGCCATCCTATGACCA 58.405 50.000 5.01 0.00 41.93 4.02
2862 3000 0.839946 ACAGGCCATCCTATGACCAC 59.160 55.000 5.01 0.00 41.93 4.16
2863 3001 0.250038 CAGGCCATCCTATGACCACG 60.250 60.000 5.01 0.00 41.93 4.94
2864 3002 0.398522 AGGCCATCCTATGACCACGA 60.399 55.000 5.01 0.00 42.06 4.35
2865 3003 0.687354 GGCCATCCTATGACCACGAT 59.313 55.000 0.00 0.00 32.44 3.73
2866 3004 1.338200 GGCCATCCTATGACCACGATC 60.338 57.143 0.00 0.00 32.44 3.69
2867 3005 1.338200 GCCATCCTATGACCACGATCC 60.338 57.143 0.00 0.00 0.00 3.36
2868 3006 1.067565 CCATCCTATGACCACGATCCG 60.068 57.143 0.00 0.00 0.00 4.18
2869 3007 1.886542 CATCCTATGACCACGATCCGA 59.113 52.381 0.00 0.00 0.00 4.55
2870 3008 1.315690 TCCTATGACCACGATCCGAC 58.684 55.000 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 50 4.336532 AGAAAATAACGTCGTGCCATTC 57.663 40.909 0.00 2.55 0.00 2.67
73 81 0.579630 TGCGCAAGTACGAACAACAG 59.420 50.000 8.16 0.00 41.68 3.16
454 501 3.560278 GCGGGTCATAACGGCGTG 61.560 66.667 15.70 0.23 0.00 5.34
467 514 1.750399 CAAGTCCAATGGGAGCGGG 60.750 63.158 0.00 0.00 46.12 6.13
490 537 1.672881 CATCAAAGGGGAGCACGAATC 59.327 52.381 0.00 0.00 0.00 2.52
495 542 3.056313 GCGCATCAAAGGGGAGCAC 62.056 63.158 0.30 0.00 0.00 4.40
497 544 3.880846 CGCGCATCAAAGGGGAGC 61.881 66.667 8.75 0.00 0.00 4.70
501 548 1.003545 CATAGTTCGCGCATCAAAGGG 60.004 52.381 8.75 0.00 0.00 3.95
519 566 2.048023 CATTCCCAGTGCCACGCAT 61.048 57.895 0.00 0.00 41.91 4.73
543 592 4.320202 GGTTCTTGCTACAAAATCAGCGAA 60.320 41.667 0.00 0.00 40.79 4.70
546 595 4.503741 TGGTTCTTGCTACAAAATCAGC 57.496 40.909 0.00 0.00 38.31 4.26
593 642 4.332428 ACTAACCGCTATTATGGACCAC 57.668 45.455 0.00 0.00 0.00 4.16
645 696 2.624316 CATGGCGAATGCATATGGAC 57.376 50.000 0.00 0.00 45.35 4.02
664 719 1.289800 GGCGAGAAGTTGACCGAACC 61.290 60.000 0.00 0.00 34.80 3.62
689 744 1.269448 GCCATGAAAGCGAAGTCCAAA 59.731 47.619 0.00 0.00 0.00 3.28
892 947 2.159156 TGCATGTGGGTCTCGTGTATAC 60.159 50.000 0.00 0.00 0.00 1.47
894 949 0.901827 TGCATGTGGGTCTCGTGTAT 59.098 50.000 0.00 0.00 0.00 2.29
895 950 0.901827 ATGCATGTGGGTCTCGTGTA 59.098 50.000 0.00 0.00 0.00 2.90
896 951 0.901827 TATGCATGTGGGTCTCGTGT 59.098 50.000 10.16 0.00 0.00 4.49
897 952 2.245159 ATATGCATGTGGGTCTCGTG 57.755 50.000 10.16 0.00 0.00 4.35
898 953 5.480422 TCTTATATATGCATGTGGGTCTCGT 59.520 40.000 10.16 0.00 0.00 4.18
899 954 5.807520 GTCTTATATATGCATGTGGGTCTCG 59.192 44.000 10.16 0.00 0.00 4.04
900 955 5.807520 CGTCTTATATATGCATGTGGGTCTC 59.192 44.000 10.16 0.00 0.00 3.36
902 957 4.330074 GCGTCTTATATATGCATGTGGGTC 59.670 45.833 10.16 0.00 0.00 4.46
927 1009 4.880537 CCAGATCTCGCGCGCCTT 62.881 66.667 27.95 11.80 0.00 4.35
937 1019 4.768968 AGCAAATTAAACTGTGCCAGATCT 59.231 37.500 8.91 0.00 37.73 2.75
942 1024 3.230134 AGGAGCAAATTAAACTGTGCCA 58.770 40.909 0.00 0.00 37.73 4.92
943 1025 3.942130 AGGAGCAAATTAAACTGTGCC 57.058 42.857 0.00 0.00 37.73 5.01
962 1044 8.265998 CGCCTTAAAAATGTACAGTTTTTGAAG 58.734 33.333 31.55 27.30 39.07 3.02
987 1069 1.911464 CGTGTCATAGCGGCATATACG 59.089 52.381 1.45 1.53 0.00 3.06
988 1070 2.661675 CACGTGTCATAGCGGCATATAC 59.338 50.000 7.58 0.00 0.00 1.47
990 1072 1.339929 TCACGTGTCATAGCGGCATAT 59.660 47.619 16.51 0.00 0.00 1.78
995 1077 1.872234 CCGTCACGTGTCATAGCGG 60.872 63.158 16.51 15.59 0.00 5.52
996 1078 1.154093 ACCGTCACGTGTCATAGCG 60.154 57.895 16.51 11.02 0.00 4.26
1361 1447 8.184192 AGTGAAAAGAAATTGTTGTGTGTAGAG 58.816 33.333 0.00 0.00 0.00 2.43
1367 1453 5.348451 GTGCAGTGAAAAGAAATTGTTGTGT 59.652 36.000 0.00 0.00 0.00 3.72
1368 1454 5.348179 TGTGCAGTGAAAAGAAATTGTTGTG 59.652 36.000 0.00 0.00 0.00 3.33
1399 1494 7.308435 CAAGAACTTGCTTGGTTAATTAGAGG 58.692 38.462 1.60 0.00 41.15 3.69
1438 1533 4.142838 CGCTGTATCTGCAGATCACAAAAA 60.143 41.667 31.92 10.75 38.70 1.94
1439 1534 3.371898 CGCTGTATCTGCAGATCACAAAA 59.628 43.478 31.92 11.53 38.70 2.44
1502 1600 3.006110 ACTTTGATGGCAATGTCAAGGTG 59.994 43.478 14.02 6.81 41.31 4.00
1507 1605 4.143543 TCTGAACTTTGATGGCAATGTCA 58.856 39.130 0.00 0.00 40.31 3.58
1508 1606 4.217118 ACTCTGAACTTTGATGGCAATGTC 59.783 41.667 0.00 0.00 40.31 3.06
1509 1607 4.022589 CACTCTGAACTTTGATGGCAATGT 60.023 41.667 0.00 0.00 42.22 2.71
1510 1608 4.022589 ACACTCTGAACTTTGATGGCAATG 60.023 41.667 0.00 0.00 35.81 2.82
1511 1609 4.147321 ACACTCTGAACTTTGATGGCAAT 58.853 39.130 0.00 0.00 33.25 3.56
1513 1611 3.213206 ACACTCTGAACTTTGATGGCA 57.787 42.857 0.00 0.00 0.00 4.92
1514 1612 4.065088 TGTACACTCTGAACTTTGATGGC 58.935 43.478 0.00 0.00 0.00 4.40
1516 1614 8.438513 CAGTAATGTACACTCTGAACTTTGATG 58.561 37.037 14.62 0.00 0.00 3.07
1517 1615 8.367911 TCAGTAATGTACACTCTGAACTTTGAT 58.632 33.333 18.02 0.00 33.18 2.57
1519 1617 7.946655 TCAGTAATGTACACTCTGAACTTTG 57.053 36.000 18.02 0.00 33.18 2.77
1520 1618 7.171678 GCTTCAGTAATGTACACTCTGAACTTT 59.828 37.037 23.28 6.49 39.27 2.66
1522 1620 6.015010 AGCTTCAGTAATGTACACTCTGAACT 60.015 38.462 23.28 21.37 39.27 3.01
1523 1621 6.090088 CAGCTTCAGTAATGTACACTCTGAAC 59.910 42.308 23.28 20.29 39.27 3.18
1524 1622 6.015434 TCAGCTTCAGTAATGTACACTCTGAA 60.015 38.462 24.43 24.43 41.00 3.02
1525 1623 5.476945 TCAGCTTCAGTAATGTACACTCTGA 59.523 40.000 17.01 17.01 34.08 3.27
1527 1625 5.243954 TGTCAGCTTCAGTAATGTACACTCT 59.756 40.000 0.00 0.00 0.00 3.24
1558 1664 0.899720 ATTGGCCCTGCAAGTTCATG 59.100 50.000 0.00 0.00 0.00 3.07
1575 1681 4.917474 GCCGGAGCAAATGCAATT 57.083 50.000 5.05 0.00 45.16 2.32
1593 1699 2.606519 TTACGCAGAGGGGGCAGT 60.607 61.111 0.00 0.00 0.00 4.40
1862 1994 2.158841 CCACGTGCACAACCTACATAAC 59.841 50.000 18.64 0.00 0.00 1.89
1866 1998 0.531090 GTCCACGTGCACAACCTACA 60.531 55.000 18.64 0.00 0.00 2.74
1902 2037 0.110486 AAACCAGGCATTGTCTCGGT 59.890 50.000 6.58 6.58 0.00 4.69
1914 2049 0.948678 TCTTTTCGGCGAAAACCAGG 59.051 50.000 35.90 27.29 36.73 4.45
1964 2102 0.245539 TTTCTTAGACGGGTGAGCCG 59.754 55.000 22.74 22.74 34.97 5.52
1973 2111 5.144359 CCACACGGAAATTTTTCTTAGACG 58.856 41.667 3.28 1.20 37.35 4.18
1974 2112 5.239963 TCCCACACGGAAATTTTTCTTAGAC 59.760 40.000 3.28 0.00 37.88 2.59
1975 2113 5.378332 TCCCACACGGAAATTTTTCTTAGA 58.622 37.500 3.28 0.00 37.88 2.10
1976 2114 5.699097 TCCCACACGGAAATTTTTCTTAG 57.301 39.130 3.28 0.00 37.88 2.18
1985 2123 5.047566 TCATATTGATCCCACACGGAAAT 57.952 39.130 0.00 0.00 46.47 2.17
2025 2163 3.914364 GCGTTGGACATTCAAGAAATGAC 59.086 43.478 4.86 0.00 46.54 3.06
2028 2166 4.156008 GGTAGCGTTGGACATTCAAGAAAT 59.844 41.667 0.00 0.00 0.00 2.17
2041 2179 6.920569 AATTACAGAAATAGGTAGCGTTGG 57.079 37.500 0.00 0.00 0.00 3.77
2050 2188 9.672673 CCACCCTGATATAATTACAGAAATAGG 57.327 37.037 3.72 0.00 34.07 2.57
2053 2191 9.354673 CAACCACCCTGATATAATTACAGAAAT 57.645 33.333 3.72 0.00 34.07 2.17
2054 2192 8.553153 TCAACCACCCTGATATAATTACAGAAA 58.447 33.333 3.72 0.00 34.07 2.52
2055 2193 8.096621 TCAACCACCCTGATATAATTACAGAA 57.903 34.615 3.72 0.00 34.07 3.02
2056 2194 7.684317 TCAACCACCCTGATATAATTACAGA 57.316 36.000 3.72 0.00 34.07 3.41
2057 2195 7.773224 TGTTCAACCACCCTGATATAATTACAG 59.227 37.037 0.00 0.00 0.00 2.74
2058 2196 7.634718 TGTTCAACCACCCTGATATAATTACA 58.365 34.615 0.00 0.00 0.00 2.41
2059 2197 8.514330 TTGTTCAACCACCCTGATATAATTAC 57.486 34.615 0.00 0.00 0.00 1.89
2060 2198 9.535170 TTTTGTTCAACCACCCTGATATAATTA 57.465 29.630 0.00 0.00 0.00 1.40
2061 2199 8.429237 TTTTGTTCAACCACCCTGATATAATT 57.571 30.769 0.00 0.00 0.00 1.40
2062 2200 8.429237 TTTTTGTTCAACCACCCTGATATAAT 57.571 30.769 0.00 0.00 0.00 1.28
2063 2201 7.524698 GCTTTTTGTTCAACCACCCTGATATAA 60.525 37.037 0.00 0.00 0.00 0.98
2064 2202 6.071616 GCTTTTTGTTCAACCACCCTGATATA 60.072 38.462 0.00 0.00 0.00 0.86
2065 2203 5.279456 GCTTTTTGTTCAACCACCCTGATAT 60.279 40.000 0.00 0.00 0.00 1.63
2066 2204 4.038642 GCTTTTTGTTCAACCACCCTGATA 59.961 41.667 0.00 0.00 0.00 2.15
2067 2205 3.181466 GCTTTTTGTTCAACCACCCTGAT 60.181 43.478 0.00 0.00 0.00 2.90
2068 2206 2.167487 GCTTTTTGTTCAACCACCCTGA 59.833 45.455 0.00 0.00 0.00 3.86
2069 2207 2.093764 TGCTTTTTGTTCAACCACCCTG 60.094 45.455 0.00 0.00 0.00 4.45
2070 2208 2.183679 TGCTTTTTGTTCAACCACCCT 58.816 42.857 0.00 0.00 0.00 4.34
2071 2209 2.682155 TGCTTTTTGTTCAACCACCC 57.318 45.000 0.00 0.00 0.00 4.61
2072 2210 3.312146 CCATTGCTTTTTGTTCAACCACC 59.688 43.478 0.00 0.00 0.00 4.61
2073 2211 3.242706 GCCATTGCTTTTTGTTCAACCAC 60.243 43.478 0.00 0.00 33.53 4.16
2074 2212 2.941720 GCCATTGCTTTTTGTTCAACCA 59.058 40.909 0.00 0.00 33.53 3.67
2075 2213 3.607422 GCCATTGCTTTTTGTTCAACC 57.393 42.857 0.00 0.00 33.53 3.77
2088 2226 3.010413 GCACTTCCCCAGCCATTGC 62.010 63.158 0.00 0.00 37.95 3.56
2089 2227 3.291611 GCACTTCCCCAGCCATTG 58.708 61.111 0.00 0.00 0.00 2.82
2100 2238 4.766778 GCTCGAGCTTAGAAAGGCACTTC 61.767 52.174 29.88 0.00 43.27 3.01
2101 2239 2.933056 GCTCGAGCTTAGAAAGGCACTT 60.933 50.000 29.88 0.00 45.11 3.16
2102 2240 1.404851 GCTCGAGCTTAGAAAGGCACT 60.405 52.381 29.88 0.00 38.28 4.40
2103 2241 1.003108 GCTCGAGCTTAGAAAGGCAC 58.997 55.000 29.88 0.00 38.21 5.01
2104 2242 3.442996 GCTCGAGCTTAGAAAGGCA 57.557 52.632 29.88 0.00 38.21 4.75
2122 2260 4.183865 TGTTCATACCGAGCTCATTTGAG 58.816 43.478 15.40 3.13 44.75 3.02
2123 2261 4.200838 TGTTCATACCGAGCTCATTTGA 57.799 40.909 15.40 9.05 0.00 2.69
2124 2262 4.944962 TTGTTCATACCGAGCTCATTTG 57.055 40.909 15.40 6.79 0.00 2.32
2125 2263 7.624360 TTTATTGTTCATACCGAGCTCATTT 57.376 32.000 15.40 0.00 0.00 2.32
2126 2264 7.624360 TTTTATTGTTCATACCGAGCTCATT 57.376 32.000 15.40 1.51 0.00 2.57
2127 2265 7.041098 GGATTTTATTGTTCATACCGAGCTCAT 60.041 37.037 15.40 3.39 0.00 2.90
2128 2266 6.260050 GGATTTTATTGTTCATACCGAGCTCA 59.740 38.462 15.40 0.00 0.00 4.26
2129 2267 6.260050 TGGATTTTATTGTTCATACCGAGCTC 59.740 38.462 2.73 2.73 0.00 4.09
2130 2268 6.119536 TGGATTTTATTGTTCATACCGAGCT 58.880 36.000 0.00 0.00 0.00 4.09
2131 2269 6.371809 TGGATTTTATTGTTCATACCGAGC 57.628 37.500 0.00 0.00 0.00 5.03
2132 2270 9.632807 TTTTTGGATTTTATTGTTCATACCGAG 57.367 29.630 0.00 0.00 0.00 4.63
2133 2271 9.413048 GTTTTTGGATTTTATTGTTCATACCGA 57.587 29.630 0.00 0.00 0.00 4.69
2134 2272 9.197694 TGTTTTTGGATTTTATTGTTCATACCG 57.802 29.630 0.00 0.00 0.00 4.02
2192 2330 9.706691 TGTGAACCTTTTATGTTTGTTACAAAA 57.293 25.926 12.37 3.94 40.89 2.44
2193 2331 9.877178 ATGTGAACCTTTTATGTTTGTTACAAA 57.123 25.926 6.41 6.41 40.89 2.83
2194 2332 9.307121 CATGTGAACCTTTTATGTTTGTTACAA 57.693 29.630 0.00 0.00 40.89 2.41
2195 2333 8.687242 TCATGTGAACCTTTTATGTTTGTTACA 58.313 29.630 0.00 0.00 41.97 2.41
2196 2334 9.180678 CTCATGTGAACCTTTTATGTTTGTTAC 57.819 33.333 0.00 0.00 0.00 2.50
2197 2335 8.908903 ACTCATGTGAACCTTTTATGTTTGTTA 58.091 29.630 0.94 0.00 0.00 2.41
2198 2336 7.781056 ACTCATGTGAACCTTTTATGTTTGTT 58.219 30.769 0.94 0.00 0.00 2.83
2199 2337 7.068103 TGACTCATGTGAACCTTTTATGTTTGT 59.932 33.333 0.94 0.00 0.00 2.83
2200 2338 7.424803 TGACTCATGTGAACCTTTTATGTTTG 58.575 34.615 0.94 0.00 0.00 2.93
2201 2339 7.581213 TGACTCATGTGAACCTTTTATGTTT 57.419 32.000 0.94 0.00 0.00 2.83
2202 2340 7.581213 TTGACTCATGTGAACCTTTTATGTT 57.419 32.000 0.94 0.00 0.00 2.71
2203 2341 7.581213 TTTGACTCATGTGAACCTTTTATGT 57.419 32.000 0.94 0.00 0.00 2.29
2204 2342 9.480053 AAATTTGACTCATGTGAACCTTTTATG 57.520 29.630 0.94 0.00 0.00 1.90
2206 2344 9.528018 GAAAATTTGACTCATGTGAACCTTTTA 57.472 29.630 0.94 0.00 0.00 1.52
2207 2345 8.260114 AGAAAATTTGACTCATGTGAACCTTTT 58.740 29.630 0.94 1.76 0.00 2.27
2208 2346 7.707893 CAGAAAATTTGACTCATGTGAACCTTT 59.292 33.333 0.94 0.00 0.00 3.11
2209 2347 7.205297 CAGAAAATTTGACTCATGTGAACCTT 58.795 34.615 0.94 0.00 0.00 3.50
2210 2348 6.239120 CCAGAAAATTTGACTCATGTGAACCT 60.239 38.462 0.94 0.00 0.00 3.50
2211 2349 5.922544 CCAGAAAATTTGACTCATGTGAACC 59.077 40.000 0.94 0.00 0.00 3.62
2212 2350 6.738114 TCCAGAAAATTTGACTCATGTGAAC 58.262 36.000 0.94 0.00 0.00 3.18
2213 2351 6.957920 TCCAGAAAATTTGACTCATGTGAA 57.042 33.333 0.94 0.00 0.00 3.18
2214 2352 6.071784 CCATCCAGAAAATTTGACTCATGTGA 60.072 38.462 0.94 0.00 0.00 3.58
2215 2353 6.071784 TCCATCCAGAAAATTTGACTCATGTG 60.072 38.462 0.00 0.00 0.00 3.21
2216 2354 6.012113 TCCATCCAGAAAATTTGACTCATGT 58.988 36.000 0.00 0.00 0.00 3.21
2217 2355 6.519679 TCCATCCAGAAAATTTGACTCATG 57.480 37.500 0.00 0.00 0.00 3.07
2218 2356 7.398047 TGATTCCATCCAGAAAATTTGACTCAT 59.602 33.333 0.00 0.00 0.00 2.90
2219 2357 6.720748 TGATTCCATCCAGAAAATTTGACTCA 59.279 34.615 0.00 0.00 0.00 3.41
2220 2358 7.031975 GTGATTCCATCCAGAAAATTTGACTC 58.968 38.462 0.00 0.00 0.00 3.36
2221 2359 6.494491 TGTGATTCCATCCAGAAAATTTGACT 59.506 34.615 0.00 0.00 0.00 3.41
2222 2360 6.690530 TGTGATTCCATCCAGAAAATTTGAC 58.309 36.000 0.00 0.00 0.00 3.18
2223 2361 6.914654 TGTGATTCCATCCAGAAAATTTGA 57.085 33.333 0.00 0.00 0.00 2.69
2224 2362 9.309516 CTAATGTGATTCCATCCAGAAAATTTG 57.690 33.333 0.00 0.00 0.00 2.32
2225 2363 9.039165 ACTAATGTGATTCCATCCAGAAAATTT 57.961 29.630 0.00 0.00 0.00 1.82
2226 2364 8.599624 ACTAATGTGATTCCATCCAGAAAATT 57.400 30.769 0.00 0.00 0.00 1.82
2227 2365 9.347240 CTACTAATGTGATTCCATCCAGAAAAT 57.653 33.333 0.00 0.00 0.00 1.82
2228 2366 8.548025 TCTACTAATGTGATTCCATCCAGAAAA 58.452 33.333 0.00 0.00 0.00 2.29
2229 2367 8.089625 TCTACTAATGTGATTCCATCCAGAAA 57.910 34.615 0.00 0.00 0.00 2.52
2230 2368 7.202038 CCTCTACTAATGTGATTCCATCCAGAA 60.202 40.741 0.00 0.00 0.00 3.02
2231 2369 6.268617 CCTCTACTAATGTGATTCCATCCAGA 59.731 42.308 0.00 0.00 0.00 3.86
2232 2370 6.042552 ACCTCTACTAATGTGATTCCATCCAG 59.957 42.308 0.00 0.00 0.00 3.86
2233 2371 5.905331 ACCTCTACTAATGTGATTCCATCCA 59.095 40.000 0.00 0.00 0.00 3.41
2234 2372 6.183361 ACACCTCTACTAATGTGATTCCATCC 60.183 42.308 0.00 0.00 33.08 3.51
2235 2373 6.703607 CACACCTCTACTAATGTGATTCCATC 59.296 42.308 0.00 0.00 44.20 3.51
2236 2374 6.408548 CCACACCTCTACTAATGTGATTCCAT 60.409 42.308 4.83 0.00 44.20 3.41
2237 2375 5.104941 CCACACCTCTACTAATGTGATTCCA 60.105 44.000 4.83 0.00 44.20 3.53
2238 2376 5.360591 CCACACCTCTACTAATGTGATTCC 58.639 45.833 4.83 0.00 44.20 3.01
2239 2377 5.360591 CCCACACCTCTACTAATGTGATTC 58.639 45.833 4.83 0.00 44.20 2.52
2240 2378 4.384208 GCCCACACCTCTACTAATGTGATT 60.384 45.833 4.83 0.00 44.20 2.57
2241 2379 3.134804 GCCCACACCTCTACTAATGTGAT 59.865 47.826 4.83 0.00 44.20 3.06
2242 2380 2.500098 GCCCACACCTCTACTAATGTGA 59.500 50.000 4.83 0.00 44.20 3.58
2243 2381 2.236146 TGCCCACACCTCTACTAATGTG 59.764 50.000 0.00 0.00 41.71 3.21
2244 2382 2.546899 TGCCCACACCTCTACTAATGT 58.453 47.619 0.00 0.00 0.00 2.71
2245 2383 3.627395 TTGCCCACACCTCTACTAATG 57.373 47.619 0.00 0.00 0.00 1.90
2246 2384 4.650972 TTTTGCCCACACCTCTACTAAT 57.349 40.909 0.00 0.00 0.00 1.73
2247 2385 4.139038 GTTTTTGCCCACACCTCTACTAA 58.861 43.478 0.00 0.00 0.00 2.24
2248 2386 3.136809 TGTTTTTGCCCACACCTCTACTA 59.863 43.478 0.00 0.00 0.00 1.82
2249 2387 2.092103 TGTTTTTGCCCACACCTCTACT 60.092 45.455 0.00 0.00 0.00 2.57
2250 2388 2.303175 TGTTTTTGCCCACACCTCTAC 58.697 47.619 0.00 0.00 0.00 2.59
2251 2389 2.738587 TGTTTTTGCCCACACCTCTA 57.261 45.000 0.00 0.00 0.00 2.43
2252 2390 1.688197 CATGTTTTTGCCCACACCTCT 59.312 47.619 0.00 0.00 0.00 3.69
2253 2391 1.412343 ACATGTTTTTGCCCACACCTC 59.588 47.619 0.00 0.00 0.00 3.85
2254 2392 1.412343 GACATGTTTTTGCCCACACCT 59.588 47.619 0.00 0.00 0.00 4.00
2255 2393 1.137872 TGACATGTTTTTGCCCACACC 59.862 47.619 0.00 0.00 0.00 4.16
2256 2394 2.100584 TCTGACATGTTTTTGCCCACAC 59.899 45.455 0.00 0.00 0.00 3.82
2257 2395 2.382882 TCTGACATGTTTTTGCCCACA 58.617 42.857 0.00 0.00 0.00 4.17
2258 2396 3.665745 ATCTGACATGTTTTTGCCCAC 57.334 42.857 0.00 0.00 0.00 4.61
2259 2397 5.125900 CAGATATCTGACATGTTTTTGCCCA 59.874 40.000 25.78 0.00 46.59 5.36
2260 2398 5.585390 CAGATATCTGACATGTTTTTGCCC 58.415 41.667 25.78 0.00 46.59 5.36
2274 2412 2.682594 TCCCCACACCTCAGATATCTG 58.317 52.381 24.32 24.32 45.08 2.90
2275 2413 3.421394 TTCCCCACACCTCAGATATCT 57.579 47.619 0.00 0.00 0.00 1.98
2276 2414 4.503714 TTTTCCCCACACCTCAGATATC 57.496 45.455 0.00 0.00 0.00 1.63
2277 2415 4.946160 TTTTTCCCCACACCTCAGATAT 57.054 40.909 0.00 0.00 0.00 1.63
2297 2435 2.938838 TCACATTCGTGGAGGGTTTTT 58.061 42.857 0.00 0.00 43.79 1.94
2298 2436 2.649531 TCACATTCGTGGAGGGTTTT 57.350 45.000 0.00 0.00 43.79 2.43
2299 2437 2.879103 ATCACATTCGTGGAGGGTTT 57.121 45.000 0.00 0.00 43.79 3.27
2300 2438 2.039746 TGAATCACATTCGTGGAGGGTT 59.960 45.455 0.00 0.00 43.79 4.11
2301 2439 1.628340 TGAATCACATTCGTGGAGGGT 59.372 47.619 0.00 0.00 43.79 4.34
2302 2440 2.401583 TGAATCACATTCGTGGAGGG 57.598 50.000 0.00 0.00 43.79 4.30
2303 2441 4.395854 TGATTTGAATCACATTCGTGGAGG 59.604 41.667 2.39 0.00 43.79 4.30
2304 2442 5.550232 TGATTTGAATCACATTCGTGGAG 57.450 39.130 2.39 0.00 43.79 3.86
2315 2453 6.922407 TCTGCAAAATTTCGTGATTTGAATCA 59.078 30.769 2.39 2.39 42.78 2.57
2316 2454 7.222654 GTCTGCAAAATTTCGTGATTTGAATC 58.777 34.615 0.00 0.00 36.41 2.52
2317 2455 6.129115 CGTCTGCAAAATTTCGTGATTTGAAT 60.129 34.615 0.00 0.00 36.41 2.57
2318 2456 5.172951 CGTCTGCAAAATTTCGTGATTTGAA 59.827 36.000 0.00 0.00 36.41 2.69
2319 2457 4.674662 CGTCTGCAAAATTTCGTGATTTGA 59.325 37.500 0.00 0.00 36.41 2.69
2320 2458 4.440758 ACGTCTGCAAAATTTCGTGATTTG 59.559 37.500 0.20 0.00 37.17 2.32
2321 2459 4.606961 ACGTCTGCAAAATTTCGTGATTT 58.393 34.783 0.20 0.00 0.00 2.17
2322 2460 4.223320 ACGTCTGCAAAATTTCGTGATT 57.777 36.364 0.20 0.00 0.00 2.57
2323 2461 3.896648 ACGTCTGCAAAATTTCGTGAT 57.103 38.095 0.20 0.00 0.00 3.06
2324 2462 4.797693 TTACGTCTGCAAAATTTCGTGA 57.202 36.364 9.76 0.62 33.70 4.35
2325 2463 6.795114 AGTAATTACGTCTGCAAAATTTCGTG 59.205 34.615 9.91 0.00 33.70 4.35
2326 2464 6.894828 AGTAATTACGTCTGCAAAATTTCGT 58.105 32.000 9.91 5.78 35.73 3.85
2327 2465 7.012943 TGAGTAATTACGTCTGCAAAATTTCG 58.987 34.615 9.91 0.00 0.00 3.46
2328 2466 8.722342 TTGAGTAATTACGTCTGCAAAATTTC 57.278 30.769 9.91 0.00 0.00 2.17
2329 2467 9.128107 CATTGAGTAATTACGTCTGCAAAATTT 57.872 29.630 9.91 0.00 0.00 1.82
2330 2468 8.296713 ACATTGAGTAATTACGTCTGCAAAATT 58.703 29.630 9.91 0.00 0.00 1.82
2331 2469 7.816640 ACATTGAGTAATTACGTCTGCAAAAT 58.183 30.769 9.91 2.34 0.00 1.82
2332 2470 7.197071 ACATTGAGTAATTACGTCTGCAAAA 57.803 32.000 9.91 0.40 0.00 2.44
2333 2471 6.795098 ACATTGAGTAATTACGTCTGCAAA 57.205 33.333 9.91 0.00 0.00 3.68
2334 2472 6.795098 AACATTGAGTAATTACGTCTGCAA 57.205 33.333 9.91 10.44 0.00 4.08
2335 2473 6.203915 ACAAACATTGAGTAATTACGTCTGCA 59.796 34.615 9.91 2.75 0.00 4.41
2336 2474 6.599437 ACAAACATTGAGTAATTACGTCTGC 58.401 36.000 9.91 0.36 0.00 4.26
2337 2475 7.059488 GCAACAAACATTGAGTAATTACGTCTG 59.941 37.037 9.91 8.87 0.00 3.51
2338 2476 7.041372 AGCAACAAACATTGAGTAATTACGTCT 60.041 33.333 9.91 0.00 0.00 4.18
2339 2477 7.075741 AGCAACAAACATTGAGTAATTACGTC 58.924 34.615 9.91 8.59 0.00 4.34
2340 2478 6.966021 AGCAACAAACATTGAGTAATTACGT 58.034 32.000 9.91 0.00 0.00 3.57
2341 2479 8.942669 TTAGCAACAAACATTGAGTAATTACG 57.057 30.769 9.91 0.00 0.00 3.18
2344 2482 9.979578 TGAATTAGCAACAAACATTGAGTAATT 57.020 25.926 0.00 0.00 35.29 1.40
2345 2483 9.630098 CTGAATTAGCAACAAACATTGAGTAAT 57.370 29.630 0.00 0.00 0.00 1.89
2346 2484 8.845227 TCTGAATTAGCAACAAACATTGAGTAA 58.155 29.630 0.00 0.00 0.00 2.24
2347 2485 8.389779 TCTGAATTAGCAACAAACATTGAGTA 57.610 30.769 0.00 0.00 0.00 2.59
2348 2486 7.275888 TCTGAATTAGCAACAAACATTGAGT 57.724 32.000 0.00 0.00 0.00 3.41
2349 2487 8.752766 AATCTGAATTAGCAACAAACATTGAG 57.247 30.769 0.00 0.00 0.00 3.02
2350 2488 9.545105 AAAATCTGAATTAGCAACAAACATTGA 57.455 25.926 0.00 0.00 0.00 2.57
2386 2524 5.476091 AACTGGGAAAGTTCACACAAAAA 57.524 34.783 0.00 0.00 46.60 1.94
2397 2535 2.108952 AGCTTGGATGAACTGGGAAAGT 59.891 45.455 0.00 0.00 42.60 2.66
2398 2536 2.751806 GAGCTTGGATGAACTGGGAAAG 59.248 50.000 0.00 0.00 0.00 2.62
2399 2537 2.108075 TGAGCTTGGATGAACTGGGAAA 59.892 45.455 0.00 0.00 0.00 3.13
2400 2538 1.704628 TGAGCTTGGATGAACTGGGAA 59.295 47.619 0.00 0.00 0.00 3.97
2401 2539 1.361204 TGAGCTTGGATGAACTGGGA 58.639 50.000 0.00 0.00 0.00 4.37
2402 2540 2.431954 ATGAGCTTGGATGAACTGGG 57.568 50.000 0.00 0.00 0.00 4.45
2403 2541 4.885907 ACAATATGAGCTTGGATGAACTGG 59.114 41.667 0.00 0.00 0.00 4.00
2404 2542 6.446781 AACAATATGAGCTTGGATGAACTG 57.553 37.500 0.00 0.00 0.00 3.16
2405 2543 6.626623 GCAAACAATATGAGCTTGGATGAACT 60.627 38.462 0.00 0.00 0.00 3.01
2406 2544 5.517770 GCAAACAATATGAGCTTGGATGAAC 59.482 40.000 0.00 0.00 0.00 3.18
2407 2545 5.653507 GCAAACAATATGAGCTTGGATGAA 58.346 37.500 0.00 0.00 0.00 2.57
2408 2546 4.201940 CGCAAACAATATGAGCTTGGATGA 60.202 41.667 0.00 0.00 0.00 2.92
2409 2547 4.039703 CGCAAACAATATGAGCTTGGATG 58.960 43.478 0.00 0.00 0.00 3.51
2410 2548 3.696051 ACGCAAACAATATGAGCTTGGAT 59.304 39.130 0.00 0.00 0.00 3.41
2411 2549 3.081061 ACGCAAACAATATGAGCTTGGA 58.919 40.909 0.00 0.00 0.00 3.53
2412 2550 3.173599 CACGCAAACAATATGAGCTTGG 58.826 45.455 0.00 0.00 0.00 3.61
2413 2551 2.595536 GCACGCAAACAATATGAGCTTG 59.404 45.455 0.00 0.00 0.00 4.01
2414 2552 2.415893 GGCACGCAAACAATATGAGCTT 60.416 45.455 0.00 0.00 0.00 3.74
2415 2553 1.133025 GGCACGCAAACAATATGAGCT 59.867 47.619 0.00 0.00 0.00 4.09
2416 2554 1.135431 TGGCACGCAAACAATATGAGC 60.135 47.619 0.00 0.00 0.00 4.26
2417 2555 2.916716 GTTGGCACGCAAACAATATGAG 59.083 45.455 4.37 0.00 30.54 2.90
2418 2556 2.294512 TGTTGGCACGCAAACAATATGA 59.705 40.909 9.53 0.00 36.97 2.15
2419 2557 2.662637 CTGTTGGCACGCAAACAATATG 59.337 45.455 12.80 0.00 39.14 1.78
2420 2558 2.926159 GCTGTTGGCACGCAAACAATAT 60.926 45.455 12.80 0.00 39.14 1.28
2421 2559 1.601663 GCTGTTGGCACGCAAACAATA 60.602 47.619 12.80 0.00 39.14 1.90
2422 2560 0.875474 GCTGTTGGCACGCAAACAAT 60.875 50.000 12.80 0.00 39.14 2.71
2423 2561 1.518133 GCTGTTGGCACGCAAACAA 60.518 52.632 12.80 0.00 39.14 2.83
2424 2562 2.103934 GCTGTTGGCACGCAAACA 59.896 55.556 11.36 11.36 37.51 2.83
2425 2563 1.945662 CAGCTGTTGGCACGCAAAC 60.946 57.895 5.25 2.16 44.79 2.93
2426 2564 2.412525 CAGCTGTTGGCACGCAAA 59.587 55.556 5.25 0.00 44.79 3.68
2427 2565 4.268939 GCAGCTGTTGGCACGCAA 62.269 61.111 16.64 0.00 44.79 4.85
2429 2567 3.958822 GATGCAGCTGTTGGCACGC 62.959 63.158 16.64 0.00 43.75 5.34
2430 2568 1.020861 TAGATGCAGCTGTTGGCACG 61.021 55.000 16.28 0.00 43.75 5.34
2431 2569 0.449388 GTAGATGCAGCTGTTGGCAC 59.551 55.000 16.28 0.00 43.75 5.01
2432 2570 1.020861 CGTAGATGCAGCTGTTGGCA 61.021 55.000 16.28 7.31 45.23 4.92
2433 2571 1.021390 ACGTAGATGCAGCTGTTGGC 61.021 55.000 16.28 0.34 42.19 4.52
2434 2572 1.002366 GACGTAGATGCAGCTGTTGG 58.998 55.000 16.28 3.28 0.00 3.77
2435 2573 0.642291 CGACGTAGATGCAGCTGTTG 59.358 55.000 16.28 4.94 0.00 3.33
2436 2574 0.243907 ACGACGTAGATGCAGCTGTT 59.756 50.000 16.28 2.94 0.00 3.16
2437 2575 0.243907 AACGACGTAGATGCAGCTGT 59.756 50.000 16.28 4.38 0.00 4.40
2438 2576 0.642291 CAACGACGTAGATGCAGCTG 59.358 55.000 16.28 10.11 0.00 4.24
2439 2577 0.243907 ACAACGACGTAGATGCAGCT 59.756 50.000 10.44 10.44 0.00 4.24
2440 2578 0.366871 CACAACGACGTAGATGCAGC 59.633 55.000 0.00 0.00 0.00 5.25
2441 2579 1.649171 GACACAACGACGTAGATGCAG 59.351 52.381 0.00 0.22 0.00 4.41
2442 2580 1.001158 TGACACAACGACGTAGATGCA 60.001 47.619 0.00 0.00 0.00 3.96
2443 2581 1.693467 TGACACAACGACGTAGATGC 58.307 50.000 0.00 0.00 0.00 3.91
2444 2582 2.526289 CGATGACACAACGACGTAGATG 59.474 50.000 0.00 3.19 31.46 2.90
2445 2583 2.477357 CCGATGACACAACGACGTAGAT 60.477 50.000 0.00 0.00 31.46 1.98
2446 2584 1.135888 CCGATGACACAACGACGTAGA 60.136 52.381 0.00 0.00 31.46 2.59
2447 2585 1.135888 TCCGATGACACAACGACGTAG 60.136 52.381 0.00 0.00 31.46 3.51
2448 2586 0.873721 TCCGATGACACAACGACGTA 59.126 50.000 0.00 0.00 31.46 3.57
2449 2587 0.242825 ATCCGATGACACAACGACGT 59.757 50.000 0.00 0.00 31.46 4.34
2450 2588 1.346365 AATCCGATGACACAACGACG 58.654 50.000 0.00 0.00 31.46 5.12
2451 2589 4.171005 TCTAAATCCGATGACACAACGAC 58.829 43.478 0.00 0.00 31.46 4.34
2452 2590 4.443913 TCTAAATCCGATGACACAACGA 57.556 40.909 0.00 0.00 31.46 3.85
2453 2591 5.043903 AGATCTAAATCCGATGACACAACG 58.956 41.667 0.00 0.00 31.78 4.10
2454 2592 5.235186 CCAGATCTAAATCCGATGACACAAC 59.765 44.000 0.00 0.00 31.78 3.32
2455 2593 5.128663 TCCAGATCTAAATCCGATGACACAA 59.871 40.000 0.00 0.00 31.78 3.33
2456 2594 4.649218 TCCAGATCTAAATCCGATGACACA 59.351 41.667 0.00 0.00 31.78 3.72
2457 2595 5.201713 TCCAGATCTAAATCCGATGACAC 57.798 43.478 0.00 0.00 31.78 3.67
2458 2596 5.869649 TTCCAGATCTAAATCCGATGACA 57.130 39.130 0.00 0.00 31.78 3.58
2459 2597 5.178438 GCTTTCCAGATCTAAATCCGATGAC 59.822 44.000 0.00 0.00 31.78 3.06
2460 2598 5.163311 TGCTTTCCAGATCTAAATCCGATGA 60.163 40.000 0.00 0.00 31.78 2.92
2461 2599 5.049818 GTGCTTTCCAGATCTAAATCCGATG 60.050 44.000 0.00 0.00 31.78 3.84
2462 2600 5.059833 GTGCTTTCCAGATCTAAATCCGAT 58.940 41.667 0.00 0.00 31.78 4.18
2463 2601 4.442706 GTGCTTTCCAGATCTAAATCCGA 58.557 43.478 0.00 0.00 31.78 4.55
2464 2602 3.561725 GGTGCTTTCCAGATCTAAATCCG 59.438 47.826 0.00 0.00 31.78 4.18
2465 2603 4.786425 AGGTGCTTTCCAGATCTAAATCC 58.214 43.478 0.00 0.00 31.78 3.01
2466 2604 5.431765 TGAGGTGCTTTCCAGATCTAAATC 58.568 41.667 0.00 0.00 0.00 2.17
2467 2605 5.441718 TGAGGTGCTTTCCAGATCTAAAT 57.558 39.130 0.00 0.00 0.00 1.40
2468 2606 4.908601 TGAGGTGCTTTCCAGATCTAAA 57.091 40.909 0.00 0.00 0.00 1.85
2469 2607 5.431765 GAATGAGGTGCTTTCCAGATCTAA 58.568 41.667 0.00 0.00 0.00 2.10
2470 2608 4.141620 GGAATGAGGTGCTTTCCAGATCTA 60.142 45.833 0.00 0.00 45.51 1.98
2471 2609 3.371380 GGAATGAGGTGCTTTCCAGATCT 60.371 47.826 0.00 0.00 45.51 2.75
2472 2610 2.948315 GGAATGAGGTGCTTTCCAGATC 59.052 50.000 0.00 0.00 45.51 2.75
2473 2611 3.010200 GGAATGAGGTGCTTTCCAGAT 57.990 47.619 0.00 0.00 45.51 2.90
2474 2612 2.496899 GGAATGAGGTGCTTTCCAGA 57.503 50.000 0.00 0.00 45.51 3.86
2477 2615 3.069443 TGTTTTGGAATGAGGTGCTTTCC 59.931 43.478 0.00 0.00 46.07 3.13
2478 2616 4.320608 TGTTTTGGAATGAGGTGCTTTC 57.679 40.909 0.00 0.00 0.00 2.62
2479 2617 4.751767 TTGTTTTGGAATGAGGTGCTTT 57.248 36.364 0.00 0.00 0.00 3.51
2480 2618 4.751767 TTTGTTTTGGAATGAGGTGCTT 57.248 36.364 0.00 0.00 0.00 3.91
2481 2619 4.751767 TTTTGTTTTGGAATGAGGTGCT 57.248 36.364 0.00 0.00 0.00 4.40
2520 2658 9.990868 ATCCCTATTATTTAGGACAAAACAAGT 57.009 29.630 0.15 0.00 36.85 3.16
2537 2675 8.682710 GCATGTTTGAACAAGTTATCCCTATTA 58.317 33.333 0.10 0.00 43.03 0.98
2538 2676 7.178274 TGCATGTTTGAACAAGTTATCCCTATT 59.822 33.333 0.10 0.00 43.03 1.73
2539 2677 6.663093 TGCATGTTTGAACAAGTTATCCCTAT 59.337 34.615 0.10 0.00 43.03 2.57
2540 2678 6.007076 TGCATGTTTGAACAAGTTATCCCTA 58.993 36.000 0.10 0.00 43.03 3.53
2541 2679 4.832266 TGCATGTTTGAACAAGTTATCCCT 59.168 37.500 0.10 0.00 43.03 4.20
2542 2680 5.132897 TGCATGTTTGAACAAGTTATCCC 57.867 39.130 0.10 0.00 43.03 3.85
2543 2681 6.389091 TCATGCATGTTTGAACAAGTTATCC 58.611 36.000 25.43 0.00 43.03 2.59
2544 2682 7.723270 GTTCATGCATGTTTGAACAAGTTATC 58.277 34.615 25.43 0.00 46.95 1.75
2545 2683 7.642071 GTTCATGCATGTTTGAACAAGTTAT 57.358 32.000 25.43 0.00 46.95 1.89
2547 2685 5.971895 GTTCATGCATGTTTGAACAAGTT 57.028 34.783 25.43 0.00 46.95 2.66
2553 2691 3.244112 TGCCATGTTCATGCATGTTTGAA 60.244 39.130 25.43 11.37 43.33 2.69
2554 2692 2.299297 TGCCATGTTCATGCATGTTTGA 59.701 40.909 25.43 4.99 43.33 2.69
2555 2693 2.689646 TGCCATGTTCATGCATGTTTG 58.310 42.857 25.43 17.11 43.33 2.93
2556 2694 3.620427 ATGCCATGTTCATGCATGTTT 57.380 38.095 25.43 7.04 43.66 2.83
2557 2695 4.739587 TTATGCCATGTTCATGCATGTT 57.260 36.364 25.43 7.39 44.85 2.71
2558 2696 4.081586 TGTTTATGCCATGTTCATGCATGT 60.082 37.500 25.43 4.01 44.85 3.21
2559 2697 4.434520 TGTTTATGCCATGTTCATGCATG 58.565 39.130 21.07 21.07 44.85 4.06
2560 2698 4.403113 TCTGTTTATGCCATGTTCATGCAT 59.597 37.500 18.51 18.51 46.68 3.96
2561 2699 3.762823 TCTGTTTATGCCATGTTCATGCA 59.237 39.130 7.21 9.08 39.68 3.96
2562 2700 4.374843 TCTGTTTATGCCATGTTCATGC 57.625 40.909 7.21 4.35 0.00 4.06
2563 2701 5.068067 TGGATCTGTTTATGCCATGTTCATG 59.932 40.000 5.88 5.88 0.00 3.07
2564 2702 5.202765 TGGATCTGTTTATGCCATGTTCAT 58.797 37.500 0.00 0.00 0.00 2.57
2565 2703 4.598022 TGGATCTGTTTATGCCATGTTCA 58.402 39.130 0.00 0.00 0.00 3.18
2566 2704 5.779529 ATGGATCTGTTTATGCCATGTTC 57.220 39.130 0.00 0.00 37.91 3.18
2567 2705 5.163385 CCAATGGATCTGTTTATGCCATGTT 60.163 40.000 0.00 0.00 39.19 2.71
2568 2706 4.342951 CCAATGGATCTGTTTATGCCATGT 59.657 41.667 0.00 0.00 39.19 3.21
2569 2707 4.585581 TCCAATGGATCTGTTTATGCCATG 59.414 41.667 0.00 0.00 39.19 3.66
2570 2708 4.806892 TCCAATGGATCTGTTTATGCCAT 58.193 39.130 0.00 0.00 40.88 4.40
2571 2709 4.248174 TCCAATGGATCTGTTTATGCCA 57.752 40.909 0.00 0.00 0.00 4.92
2572 2710 5.796424 AATCCAATGGATCTGTTTATGCC 57.204 39.130 16.08 0.00 42.27 4.40
2573 2711 7.983484 AGAAAAATCCAATGGATCTGTTTATGC 59.017 33.333 16.08 6.32 42.27 3.14
2574 2712 9.309516 CAGAAAAATCCAATGGATCTGTTTATG 57.690 33.333 16.08 17.31 42.27 1.90
2575 2713 9.258629 TCAGAAAAATCCAATGGATCTGTTTAT 57.741 29.630 22.69 14.93 42.27 1.40
2576 2714 8.648698 TCAGAAAAATCCAATGGATCTGTTTA 57.351 30.769 22.69 7.95 42.27 2.01
2577 2715 7.543359 TCAGAAAAATCCAATGGATCTGTTT 57.457 32.000 22.69 18.63 42.27 2.83
2578 2716 7.729124 ATCAGAAAAATCCAATGGATCTGTT 57.271 32.000 22.69 15.52 42.27 3.16
2596 2734 9.230122 TGCACATGAAGAAAAGTTATATCAGAA 57.770 29.630 0.00 0.00 0.00 3.02
2597 2735 8.791327 TGCACATGAAGAAAAGTTATATCAGA 57.209 30.769 0.00 0.00 0.00 3.27
2603 2741 8.752187 ACCATAATGCACATGAAGAAAAGTTAT 58.248 29.630 10.92 0.00 0.00 1.89
2604 2742 8.121305 ACCATAATGCACATGAAGAAAAGTTA 57.879 30.769 10.92 0.00 0.00 2.24
2605 2743 6.996509 ACCATAATGCACATGAAGAAAAGTT 58.003 32.000 10.92 0.00 0.00 2.66
2606 2744 6.594788 ACCATAATGCACATGAAGAAAAGT 57.405 33.333 10.92 0.00 0.00 2.66
2607 2745 7.894376 AAACCATAATGCACATGAAGAAAAG 57.106 32.000 10.92 0.00 0.00 2.27
2608 2746 9.941325 ATTAAACCATAATGCACATGAAGAAAA 57.059 25.926 10.92 1.44 0.00 2.29
2609 2747 9.941325 AATTAAACCATAATGCACATGAAGAAA 57.059 25.926 10.92 2.53 0.00 2.52
2610 2748 9.941325 AAATTAAACCATAATGCACATGAAGAA 57.059 25.926 10.92 0.00 0.00 2.52
2611 2749 9.585099 GAAATTAAACCATAATGCACATGAAGA 57.415 29.630 10.92 0.00 0.00 2.87
2612 2750 9.590451 AGAAATTAAACCATAATGCACATGAAG 57.410 29.630 10.92 0.00 0.00 3.02
2670 2808 9.246670 TGGATGAATCAGAAATGACTTATTTGT 57.753 29.630 0.00 0.00 39.06 2.83
2758 2896 9.236006 ACTGCTAATAACTCACATGAAGAAAAT 57.764 29.630 0.00 0.00 0.00 1.82
2759 2897 8.506437 CACTGCTAATAACTCACATGAAGAAAA 58.494 33.333 0.00 0.00 0.00 2.29
2760 2898 7.119699 CCACTGCTAATAACTCACATGAAGAAA 59.880 37.037 0.00 0.00 0.00 2.52
2761 2899 6.595326 CCACTGCTAATAACTCACATGAAGAA 59.405 38.462 0.00 0.00 0.00 2.52
2762 2900 6.108687 CCACTGCTAATAACTCACATGAAGA 58.891 40.000 0.00 0.00 0.00 2.87
2763 2901 5.295292 CCCACTGCTAATAACTCACATGAAG 59.705 44.000 0.00 0.00 0.00 3.02
2764 2902 5.185454 CCCACTGCTAATAACTCACATGAA 58.815 41.667 0.00 0.00 0.00 2.57
2765 2903 4.384098 CCCCACTGCTAATAACTCACATGA 60.384 45.833 0.00 0.00 0.00 3.07
2766 2904 3.879295 CCCCACTGCTAATAACTCACATG 59.121 47.826 0.00 0.00 0.00 3.21
2767 2905 3.685550 GCCCCACTGCTAATAACTCACAT 60.686 47.826 0.00 0.00 0.00 3.21
2768 2906 2.355716 GCCCCACTGCTAATAACTCACA 60.356 50.000 0.00 0.00 0.00 3.58
2769 2907 2.289565 GCCCCACTGCTAATAACTCAC 58.710 52.381 0.00 0.00 0.00 3.51
2770 2908 1.211949 GGCCCCACTGCTAATAACTCA 59.788 52.381 0.00 0.00 0.00 3.41
2771 2909 1.477014 GGGCCCCACTGCTAATAACTC 60.477 57.143 12.23 0.00 0.00 3.01
2772 2910 0.551396 GGGCCCCACTGCTAATAACT 59.449 55.000 12.23 0.00 0.00 2.24
2773 2911 0.551396 AGGGCCCCACTGCTAATAAC 59.449 55.000 21.43 0.00 0.00 1.89
2774 2912 0.843984 GAGGGCCCCACTGCTAATAA 59.156 55.000 21.43 0.00 0.00 1.40
2775 2913 1.060163 GGAGGGCCCCACTGCTAATA 61.060 60.000 21.43 0.00 0.00 0.98
2776 2914 2.386935 GGAGGGCCCCACTGCTAAT 61.387 63.158 21.43 0.00 0.00 1.73
2777 2915 3.015145 GGAGGGCCCCACTGCTAA 61.015 66.667 21.43 0.00 0.00 3.09
2778 2916 3.579451 AAGGAGGGCCCCACTGCTA 62.579 63.158 21.43 0.00 35.45 3.49
2780 2918 4.748144 CAAGGAGGGCCCCACTGC 62.748 72.222 21.43 5.30 34.66 4.40
2781 2919 4.052518 CCAAGGAGGGCCCCACTG 62.053 72.222 21.43 11.11 34.66 3.66
2782 2920 4.617595 ACCAAGGAGGGCCCCACT 62.618 66.667 21.43 14.97 43.89 4.00
2783 2921 4.366684 CACCAAGGAGGGCCCCAC 62.367 72.222 21.43 12.42 43.89 4.61
2784 2922 4.938756 ACACCAAGGAGGGCCCCA 62.939 66.667 21.43 0.00 43.89 4.96
2785 2923 1.795951 TAAACACCAAGGAGGGCCCC 61.796 60.000 21.43 10.33 43.89 5.80
2786 2924 0.611062 GTAAACACCAAGGAGGGCCC 60.611 60.000 16.46 16.46 43.89 5.80
2787 2925 0.611062 GGTAAACACCAAGGAGGGCC 60.611 60.000 0.00 0.00 43.89 5.80
2788 2926 0.404426 AGGTAAACACCAAGGAGGGC 59.596 55.000 0.00 0.00 43.89 5.19
2789 2927 2.238898 CCTAGGTAAACACCAAGGAGGG 59.761 54.545 0.00 0.00 43.89 4.30
2790 2928 2.238898 CCCTAGGTAAACACCAAGGAGG 59.761 54.545 8.29 0.00 45.67 4.30
2791 2929 2.238898 CCCCTAGGTAAACACCAAGGAG 59.761 54.545 8.29 0.00 0.00 3.69
2792 2930 2.271777 CCCCTAGGTAAACACCAAGGA 58.728 52.381 8.29 0.00 0.00 3.36
2793 2931 2.801077 CCCCTAGGTAAACACCAAGG 57.199 55.000 8.29 0.00 0.00 3.61
2803 2941 8.282256 CTAACCTAGTTAGTTAACCCCTAGGTA 58.718 40.741 29.89 21.82 41.91 3.08
2804 2942 7.128751 CTAACCTAGTTAGTTAACCCCTAGGT 58.871 42.308 27.05 27.05 43.17 3.08
2805 2943 7.594351 CTAACCTAGTTAGTTAACCCCTAGG 57.406 44.000 26.18 26.18 40.17 3.02
2821 2959 9.530633 CCTGTTAATTAGCACTAACTAACCTAG 57.469 37.037 15.36 9.32 37.10 3.02
2822 2960 7.983484 GCCTGTTAATTAGCACTAACTAACCTA 59.017 37.037 15.36 2.22 37.10 3.08
2823 2961 6.822170 GCCTGTTAATTAGCACTAACTAACCT 59.178 38.462 15.36 0.00 37.10 3.50
2824 2962 6.037940 GGCCTGTTAATTAGCACTAACTAACC 59.962 42.308 15.36 4.56 37.10 2.85
2825 2963 6.596497 TGGCCTGTTAATTAGCACTAACTAAC 59.404 38.462 12.52 12.52 37.89 2.34
2826 2964 6.713276 TGGCCTGTTAATTAGCACTAACTAA 58.287 36.000 3.32 0.00 36.60 2.24
2827 2965 6.302535 TGGCCTGTTAATTAGCACTAACTA 57.697 37.500 3.32 0.00 0.00 2.24
2828 2966 5.174037 TGGCCTGTTAATTAGCACTAACT 57.826 39.130 3.32 0.00 0.00 2.24
2829 2967 5.008712 GGATGGCCTGTTAATTAGCACTAAC 59.991 44.000 3.32 0.00 0.00 2.34
2830 2968 5.104109 AGGATGGCCTGTTAATTAGCACTAA 60.104 40.000 3.32 0.00 44.90 2.24
2831 2969 4.412199 AGGATGGCCTGTTAATTAGCACTA 59.588 41.667 3.32 0.00 44.90 2.74
2832 2970 3.203040 AGGATGGCCTGTTAATTAGCACT 59.797 43.478 3.32 0.00 44.90 4.40
2833 2971 3.555966 AGGATGGCCTGTTAATTAGCAC 58.444 45.455 3.32 0.00 44.90 4.40
2834 2972 3.951563 AGGATGGCCTGTTAATTAGCA 57.048 42.857 3.32 1.83 44.90 3.49
2835 2973 5.412904 GTCATAGGATGGCCTGTTAATTAGC 59.587 44.000 3.32 0.00 46.45 3.09
2847 2985 1.338200 GGATCGTGGTCATAGGATGGC 60.338 57.143 0.00 0.00 0.00 4.40
2848 2986 1.067565 CGGATCGTGGTCATAGGATGG 60.068 57.143 0.00 0.00 0.00 3.51
2849 2987 1.886542 TCGGATCGTGGTCATAGGATG 59.113 52.381 0.00 0.00 0.00 3.51
2850 2988 1.887198 GTCGGATCGTGGTCATAGGAT 59.113 52.381 0.00 0.00 0.00 3.24
2851 2989 1.315690 GTCGGATCGTGGTCATAGGA 58.684 55.000 0.00 0.00 0.00 2.94
2852 2990 3.867723 GTCGGATCGTGGTCATAGG 57.132 57.895 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.