>input_sequence_66650
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--------------------------------------------ATGACACGTGACGGTGCGATGGGCGCGGTGGCGGCG
ATGGTGCTGGTGCTGGCCGTGGCCGTGGCGGTGCTGCCGGCGGCGGTGTCGGGGCAGGCGGGGGTGGCGACGTCGTGCAC
GGCGTCGCTGATCAGCACGTTCACGCCGTGCCTCAACTTCGTGACGGGGAGCACCAACGGCGGGGGCTCGCCGACGCTGC
AGTGCTGCAGGGCGGTGGCCGGGGTGGTCCGCACCGGCGCCGACTGCGCCTGCCTCATCCTCACCGGCAACGTGCCCTTC
GGCCTCCCCATCAACCGCACCCTCGCCATCTCCCTCCCCAGGGTCTGCAAGTCGCTCTCCGTCCCGCTCGTCTGCAGAGG
TCCGT-CTCTACACACAACAATTTCTTTTCA---------CTGCACAATTTGACCTCTAATTAACCAAGCAAGTTCTTGT
CTGTTCCAATTTTTTTTGTGATCTGCAGATACAGCGACGCAAATCCCAGCTCCAGGTAAC-T--TAATTCTCCTTGCTTC
ACCTTGACATTGCCATCAAAGTTCA----GAGTGTACATTACTGAAGCT----GACACTGAACCATGAACTTGCAGGGCC
AATTGCATTTGCTCCGGCACTGCC--------------------CCCTCTGCGTAAGTATCTTCAACGATGTTCTGCTCC
T------ACCGTACCGAAGTTGCAAATTAATTTGTTGGTCTGAAAAAACGTCTTGCAATTCTGCAGCAGCGTTGCCGCCG
GAGTCATCGGTGGATGAGACGGCGACGTCGCCGGCGGTGGAAGCGCCGCCGGTCATGCAGGGGCAGAGGCCGGTGGTGGT
GCCCAGCTCGGCGTGGAGGGGCGCCCGTGCTCCCTCCGTTCTGCTGCTTGCAGTCGCATCCATTTTGGCTCTGGTTATGT
AG------------------------------------------------------------------------------
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>chr5B_1_TraesCS5B01G436600
GTAGGGCGTCGCCGGAGAAGACATCGGAACACCCATGGCT-----GCACGAATGGCACGACGTTATTTTCT--ACTCGTG
CTGTTGTTCGTACTTGCGCAATGT---------------------GAACTTACAGTCGCACTGGCTGGCGGGCGGCGCCT
GGACCCTGCACGCCGCGGGCATCTGCAGCGCGCGGGCGCCGTCCAGGGCGACGCCGAGCGTGGCCGCCGTGCCGCCGAGC
ACCGCGCAGAGGCACCGCGGGCTGGACCGCAGCACGCCGGACACCGCCGCGCAGCACGGCTCCCCGGGCGCCGTCGCGTT
GCCCGACATGTAGCCCATGCACGGCGACAGGCTGACGAGCTCCGGCATGCAACCAGAGCCCCCGCTGCCACCAGATGGA-
-----------------GCCTGCGCCGGCGCCTGCGCCTGCGCCGCGCACTGGCACACCAGCAGCGCGGCCGCCACGGCC
AGGACAAGGCCGAGCGCCGACACGCCGTTATGACCCGCTCCCATTGGACTTGTTGTGATTCGTGCTCCCCTTTGATGCGC
GAACTATGCGTGGCACTGGGAATGGTCAG--TTCGCTGATTTTGTAGCAAGAACCATTCTCGTTCTTGACACTGACAGAC
CGTGGTCCATAATAGCGGTTAGTTA--AGGTTGGTCGCGCCGGTGAGCCCAGGCTGTC----CATATGCATTCGCCATGG
TTCGGTCAACTTCTCGCCAAATCTTTGGACTTCGCTTTCATGGCGAGTCAGTCAGAGTCTCCGAGACAGAGAGAGCAGTG
CACCTGCAAACTTTGTGGATTCATCTGGTCACAATCGTCCTAGCTACCTGACGTCCTGATCACCTAAACGCATCAGCACA
AGCGGTTCGCGCAACCACCATGGCCAAACGCTCATCTACCACCTGAAACATTCTTAACCACACTAGGTATACACGAG---
------------------------ACCCACATGCATATATAAGACGCGAAGGCGCGCGAGATCTGGCACAGTTTAATTTG
CTCCTTCAAAAACTGTACATTTTTAAGGCGTATATGCC---GCTATGACACGTGACGGTGCGATGGGCGCGGTGGCGGCG
ATGGTGCTGGTGCTGGCCGTGGCCGTGGCGGTGCTGCCGGCGGCGGTGTCGGGGCAGGCGGGGGTGGCGACGTCGTGCAC
GGCGTCGCTGATCAGCACGTTCACGCCGTGCCTCAACTTCGTGACGGGGAGCACCAACGGCGGGGGCTCGCCGACGCTGC
AGTGCTGCAGGGCGGTGGCCGGGGTGGTCCGCACCGGCGCCGACTGCGCCTGCCTCATCCTCACCGGCAACGTGCCCTTC
GGCCTCCCCATCAACCGCACCCTCGCCATCTCCCTCCCCAGGGTCTGCAAGTCGCTCTCCGTCCCGCTCGTCTGCAGAGG
TCCGT-CTCTACACACAACAATTTCTTTTCA---------CTGCACAATTTGACCTCTAATTAACCAAGCAAGTTCTTGT
CTGTTCCAATTTTTTTTGTGATCTGCAGATACAGCGACGCAAATCCCAGCTCCAGGTAAC-T--TAATTCTCCTTGCTTC
ACCTTGACATTGCCATCAAAGTTCA----GAGTGTACATTACTGAAGCT----GACACTGAACCATGAACTTGCAGGGCC
AATTGCATTTGCTCCGGCACTGCC--------------------CCCTCTGCGTAAGTATCTTCAACGATGTTCTGCTCC
T------ACCGTACCGAAGTTGCAAATTAATTTGTTGGTCTGAAAAAACGTCTTGCAATTCTGCAGCAGCGTTGCCGCCG
GAGTCATCGGTGGATGAGACGGCGACGTCGCCGGCGGTGGAAGCGCCGCCGGTCATGCAGGGGCAGAGGCCGGTGGTGGT
GCCCAGCTCGGCGTGGAGGGGCGCCCGTGCTCCCTCCGTTCTGCTGCTTGCAGTCGCATCCATTTTGGCTCTGGTTATGT
AGGTTGTGCACGT---GGACTTGTAGGATGCTCATCACCGAGACAATGCCTGGTTTTCGCCGAAAAGAAAAGAAGGATGT
TA---TTGTGTTGGTGGCTTTCGGCTCACCCGTCTAAGAAAAATTTCCGTGTGGGATCAATATGATGTGATTATGGAACA
CGGTCATTTCTTGAATGTCCAACGCTACCTATTTCTGTAATTATATCAGGGTGGTTGAACAAAAAGCAATGGCTGGGGAA
GTGCCTTTCTAAGCTCGAGCTCAAATGAGCTCGGTATGAACAATAAAATCCAAAAACATAATTATTTTTCCTAGAAACTA
ATGAAATATTTTTGTAACAAACATAAAAGGTTCACATGAGTCAAATTTTCTGGATGGAATCACATTAGTAGAGGTGTGGG
CAAAAACATGTCAGATATCTGAGGTGTGGGGAAAAAAAACCCTCCACGAATGTGATTCAAATCACGAAATTTTGCAGACG
TAATTACTCAATGTTTGTTGCTAATTCAGATTTTTTTGTGTTTTTTTTGTGTGAACTTTCCCAGTTCATCCAAGCTCATA
TTGTTTGCGTGCCAACAGCTGCATCTACGTCGTTGTGTCATCGGATTTAGATCTGGAAAGCACCTCATTCCAAAACAAAA
AAGATAAAATGTCATTTACTTGTTTTGTCCTAAATAATAGGGATAACTTGTTCAAACATGCATGAACATGGCATAAACAG
ATCCATTGGATTTTTCTGATATAACTTTTCTTCATGTGCATTATGGTTTAATTTCTATATATTTCAATTTTTAGATTATT
TTCTGAAACAAATAAGTCATTTCTGATTCATCCAAAAAATAAGTCATTTCTTATATTTTCTGATCGTAACAAAAAATAAT
CCAATGAGTATGAATATTTTCTTCATGTGAGTTATTAGCAGTGGGGCCCTCCTTGGTGTTTACCTAGGGGTTAACTAACT
AGGTTAGTTAGTGCTAATTAACAGGCCATCCTATGACCACGATCCGAC
>chr5D_1
GTAGGGCGTCGCCGGAGAAGACATCGGAACACCCATGGCTGCACGGCACAAATGGCACGACGTTATTTTCT--ACTTGCG
GTGTTGTTCGTACTTGCGCAGTGT---------------------GGGCTTACAGTCGCACTGGCTGGCGGGCGGGGCCT
GGACCCTGCACGCCGCGGGCATCTGCAGCGCGCGGGCGCCGTCCAGGGCCACGCCGAGCGTGGCCGCCGTGCCGCCGAGC
ACCGCGCAGAGGCATTTCGGGCTGGACCGCAGCACGCCGGACACCGCCGCGCAGCACGGCTCCCCGGGCGCCGTTGCGTT
GCCCGACATGTAGGCCATGCACGGGGAAAGGCTGACGAGCTCCGGCATGCAACCAGAGCCCCCGCTGCCACCAGATGGA-
-----------------GCCGGCGCCGGCGCCGGCACCTGTGCCGCGCACTGGCACGCCAGCAGCGCGGCCGCCACGGCC
AGGACAAGGCCGAGCGCCGAGACGCCGTTATGATCCGCTCCCATTGGACTTGTTGTAATTCCT--TCGCCTTTGATGCGC
GAACTGTGCGTGGCACTGGC-ATGGTCAG--CTCTCTGATTTTGTAGCAAGAAGCATTCTCGTTCTTGACACTGACAGAC
CATGGTCCATAATAGCGGTTAGTTA--AGGTTGGTCGCGCCGGTGAGCCCAGGCTATTTTTGCATATGCATTCGCCATTG
TTCGGTCAACTTCTCGCCAAATCCTTGGACTTCGCTTTCATGGCGAGTCAGTCGGAGTCTCCGAGACAGAGAGAGCAGTG
CACCTGCAAACTTTGCGGATTCATCTGGTCACA---GTCCCAGCTACCTCACGTCCTGATCACCTAAACGCATCAGCACA
AGCGGTTCGCGCAACCACCATGGCCAAACGCTCATCTACCACCTGAAACATTCTTAACCACACTAGTTTACACACACGAC
AACTACCAAAGTGTATTTCCCATCACCCACATGCATATATAAGCAGCGGAACCGCGCGGGATCCTTCACAGTGTAATTTG
CTCATTCAAAAAACTGTGGTGCATTTCAGTTGTATGATCGGGCTATGACACGTGACGGTGCGATGGGCGCGGCGGCGGCG
TTGGTATTGGTGCTGGCCGTG------------CTGCCGGCGGCGGTGTCGGGGCAGGCGGGGGTGGCGACGTCGTGCAC
GGCGTCGCTGATCAGCACGTTCACGCCGTGCCTCAACTTCGTGACGGGGAGTACCAACGGCGGGGGCTCGCCGACGCTGC
AGTGCTGCAGGGCGGTGGCCGGGGTGGTCCGCACCGGCGCCGACTGCGCCTGCCTCATCCTCACCGGCAACGTGCCCTTC
GGCCTCCCCATCAACCGCACCCTCGCCATCTCCCTCCCCAGGGTCTGCAAGTCGCTCTCCGTCCCGCTCGTCTGCAGAGG
TCCGT-GTCTACTTCCAACAGTTTGTTTTCAGTTTTTTTACTGCACAATTTGAACTCTGATTAACCAAGCAAGTTCTTGT
CTGTCGCATTC----TTGTGATCTGCAGATACAGCGACGCAAATCCCAGCTCCAGGTAAA-T--TAATTCTTCTTGCTTA
ACCTGCCATTGACATAGTATTGAGTAATTGAGTGTACATTACTGAAGCTGATTAACACTGAACGATGAACTTTCAGGGCC
TATTGCATTTGCTCCGGCGCTGCC--------------------CCCTCTGCGTAAGTATCTTCAACGACGTTCTGCTCC
T------ACCGTACCGAAGTTGCAAATTAATCTGTTGGTCTGAACAAACGTCTTGCAATTCTGCAGCAGCGTTGCCGCCG
GAGTCGTCGGTGGATGAGACGGCGACACCGCCGGCGGTGGAAGCGCCGCCGGTCATGCAGGGGCAGAGGCCGGTGGTAGT
GCCCAGCTCGGTGTGGAGGGGCGCCCGTGCTCCCTCCGTTCTGCTGCTTGTGGCCGCATCCATTTTGGTTCTGATTACGT
AGGTTGTGCACGTGGAGGACTTGTAGGATGCTCATCTCCGAGACAATGGCTGGTTTTCGCCGCAAAGAAAAGAAGGATGT
TACTATTGTGTTGGTGGCTTTGGGCTCACCGTG-TAAGAAAATTTTCCGTGTGGGATCAATATGATGTGATTATGGAGCA
CG-TGTTTTCTTGAATGT--------------------------------------------------------------
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>chr5A_1
GTAGGGCGCCGCCGGAGAAGACATCGGAGCTCCCATGGCT-----GCACAAATGGCACGACGTTATTGTCC--ACCCGTG
GTGTTTCGCAGTAGATTTTCCAGACCACTCCTTTCTGAGCTATTGGAAGTTACCGTCGCACTGGCTGGCGGGCGGGGCCT
GGACCTTGCACGCCGCGGGCATCTGCAGCGCGCGGGCGCCGTCCACGGCCACGCCGAGCGTGGCCGCCGTGCCGCCAAGC
ACCGCGCAGAGGCACCGCGGGCTGGACCGCAGCACGCCGGACACCGCCGCGCAGCACGGCTCCCCGGGCGCCGTCGCGTT
GCCTGACATGTAGCCCATGCACGGCGACAGGCTCACGAGCTCCGGCATGCACCCAGAGCCGCCGCCGCCACCAGATGGA-
-----------------GCCTGCGCCG------------------CGCACTGGCACGCCAGCAGCGCGGCCGCCACGGCC
AGGACAAGGCCGAGCAACGCGACGTTGGCGTAAGTCGCTCCCATTGGACCTGCTGTAATTCTTCCTTGTGTATGATGAGC
AAGCTGTGCGTGGCACTGGTACGCACATATCCTCTCTTATTTTGTAGCAAGAACCATTCTCTTTCTTGACACTGACAGAC
CATGGTCCATAATAGTAGCAATTAGTTAGGTTGGTCGCGCCGGTGAGCCCAGGCTATTTTTGCATATGCATTCGCCATTG
TTCGGTCAACTTCTCGCCAAATCCTTGGACTTCGCTTTCATGGCGAGTCAGTCAGAGTCTCCAAGACAGAGAGAGCAGTG
CACCTGCAAACTTTCTGGATTCATCTGGTCACAATCGTCCTAGCTACCCGACGTCCTGATCACCTAAACGCATCGGCACA
AGCGGTTCGCGCAACCACCATGGCCAAACGCTCATCTACCACCTGAAACATTCTTAACCACACTAGTTTACACACACGAC
ACCCA--------------CCATCACCCACATGCATATATAAGCAGCGGAACCGCGCGGGATCCTGCACAGTTTAATTTG
TCATTC--AAAAACTGTGGTGCATTTCAGTTGTATGATCGGGCTATGACACGTGACGGTGCGATGGGCGCGGCGGCGGCG
ATGGTGCTGGTGCTGGCCGTG------------CTTCCGGCGGCGGTGTCGGGGCAGGCGGGGGTGGCGACGTCGTGCAC
GGCGTCGCTGATCAGCACCTTCACGCCGTGCCTCAACTTCGTGACGGGGAGCACCAACGGCGGGGGCTCGCCGACGCAGC
AGTGCTGCAGGGCGGTGGCCGGGGTGGTCCGCACGGGCGCCGATTGCGCCTGCCTCATCCTCACCGGCAACGTGCCCTTC
GGCCTCCCCATCAACCGCACCCTCGCCATCTCCCTCCCCAGGGTCTGCAAGTCGCTGTCCGTCCCGCTCGTCTGCAGAGG
TCCGT-TTCTACTTACAACGATTTATTTTCAGTTTTTTTACTGCACAATTTGAACTCTGATTAACCAACCAAG-------
---------TC----TTGTGATCTGCAGATACAGCGACGCAAATCCCAGCTCCAGGTAACTT--TAATCCTCCCTGA---
-----CCATTGTCGTATTACTGACTAC-TGAGTGTACATTACTGAAGCTAATTAACACTGAACAATGAACTTGCAGGGCC
CATTGCATTTGCCCCGGCGCTGCC--------------------TCCTCTGCGTAAGTATCTTCAACGATCTTCTGCTCC
T------ACCGCACCGAAGCTGCAAATTAATCTGTTGGTCTGAACAAACGTCTTGCAATTCTGCAGCAGCGTTGCCACCG
GAGTCGTCGGTGGATGAGACGGCGACGTCGCCGGCGGTGGAAGCGCCGCCGGTCATGCAGGGGCAGAGGCCGGTGGTGGT
GCCCAGCTCGGCGTGGAGGGGCGCCGGTGCTCCCTCCGTTCTGCTGCTTGCAGTCGCATCCATTTTGGCTCTGATTTCTT
AGGTTGTGCATGTG---GACTTGTAGGGTACTTATCTCCGAGACAATGGCTGGATTTCACCGCTAAAATAGATATGT---
-----TTGTGTTGATGGCTTTGGGCTCACCGTG-TAAGAATTTTTTACGTGTGGGATCAACATGATGTGATTATGGAACA
CG-TCTTTTCTTGAATGT--------------------------------------------------------------
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>chr5A_1
GTAGGGCGTCGCCGGAGAAGACAGCGGAACGCCCATGGCTGCACGGCACAAATGGCACGACGTTATTTTCTGCACTTGTG
GTGTCGTTCGTACTTGCGCAATGT---------------------GGACTCACCGTCGCACTGGCTGGCGGGCGGCGCCT
GGACCCTGCACGCCGCGGGCATCTGCAGCGCGCGGGCACCGTCCAGGGCGACGCCGAGCGTGGCCGCCGTGCCGCCGAGC
ACCGCGCAGAGGCACTGCGGGCTGGACCGCAGCACGCCGGACACCGCCGCGCAGCACGGCTCCCCGGGCGCCGTCGCGTC
GCCCGACATGTAGCCCATGCACGGCGACAGGCTCACGAGCTCCGGCATGCACCCGGAGCCCCCGCTGACCCCTGAGGGCG
CCGGCGCCGGCGCCTCGGCCTGCGCCG------------------CGCACCGGCACGCCATCAGCGCGGCCGTCACGGCC
AGGGCAAGGCCGAGCAACGCGACGTTGGCGTAAGTCGTTCCCATTGGACCTGCTGTAATTCTTCCTTGTGTGTGATGAGC
AAGCTGTGCGTGGCACTGGTACGCACATATCCTCTCTTATTTTGTAGCAAGAACCATTCTCTTTCTTGACACTGACAGAC
CATGGTCCATAATAGTAGCAATTAGTTAGGTTGGTCGCGCCGGTGAGCCCAGGCTATTTTTGCATATGCATTCGCCATTG
TTCGGTCAACTTCTCGCCAAATCCTTGGATTTCGCTTTCATGGCGAGTCAGTCAGAGTCTCCAAGACAGAGAGAGCAGTG
CACCTGCAAACTTTCTGGATTCATCTGGTCACAATCGTCCTAGCTACCCGACGTCCTGATCACCTAAACGCATCGGCACA
AGCGGTTCGCGCAACCACCATGACC-------------------------------------------------------
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>chr4A_1227
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------------------------------GCACCGGCGTCGACTGCGCGTGCCGCATCCTCACCGGAAACGTGCCCTTC
GGCCTCCCCATCAGCCGCACCCTCGTCATTTCCCTCCCCAAGGTCTGCAAGTCCCTCTCCGTCCAGCTCATGTGCAGAGG
TATGTGTTCCACTTAGAGCAATTTCTTTTCAGG---------GAACCAACTGAACTCCGATTAAGGAATCAAGTTCTTGT
ATGTTCCATTC---TTTGTGATTTGCAGATACAGCGACGCAAATCCCAGCTCCCCCCCTCTACGTAATTCTTCTTGCTTA
ACCTGCCACTGCCATTATAC-----AAGTGAGTGTACATTACTGAAGCTAATTGACACTGCACTATGAACTTGCAGGGCC
TATTGCATTTTGCTCCGGGGAAGCTAATTAACACTGCACGAAAACCCTTTGCTTAAGCATCT--AACGACATTCTGCTCG
TGCCTTAACTGTATCAAAGTTGCAAACTAATTTGTTTGTCTAAATGTACGTTTCGCAACTCTACAGCAGTGTTGCCGCCG
GAGTTATCAGTGGATGAGACGGCGACGCCACCAGCGCTTGAATCACCGCC------------------------------
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>SNPs
-------------------------------------------------S------------------------------
S-------------------------------------------------------------------------------
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--------------------------------S--S----S---------------S-----------------------
--------------------S------------S----------------------S----S-S---S------------
-----S-------------S-----------S--S---------------------------------------------
-S-----------------------------------------------------S-S--------------------S-
-----------------------S--------------------------------------------------------
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------------------------------------------------------------------S-SSSSSSS-S---
-------------------------------------------SS---S-SS------S----SS---------------
---S--------SSSSSSS-SSS-SSSSSS-S----SS----------------------------------S-------
---------------------SSSSSSSSSSSS-----------------------------------------------
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------S-----SS---------------------------------------S----S---------------------
--------S-SSSS-----------------------------------------------------------------S
----SSSSS-SS-SS-SS-SSSS-S--------------------------------------S----------------
S-----------------S-------------------------------------------------------------
--------------------------------------------S-----------------------------------
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-------------------------------------------------------------------------S---S--
------------------------------------S-----------S-------------S-----------------
---------------------S--------SSSS--------S-------------------------------------
--S--S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_566
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------------------------------------------------------------------CCCCTTTGATGCGC
GAACTA--------------------------------------------------------------------------
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>reverse_2037
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------------------------------------ACCGAGACAATGCCTGGTTT------------------------
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