Multiple sequence alignment - TraesCS5B01G431900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G431900 chr5B 100.000 2435 0 0 1 2435 606589841 606587407 0.000000e+00 4497.0
1 TraesCS5B01G431900 chr5B 93.750 1024 45 10 700 1706 606596682 606595661 0.000000e+00 1519.0
2 TraesCS5B01G431900 chr5B 92.453 106 7 1 1885 1990 68902489 68902385 1.510000e-32 150.0
3 TraesCS5B01G431900 chr5B 75.532 376 49 16 780 1145 606485439 606485097 7.020000e-31 145.0
4 TraesCS5B01G431900 chr5A 93.827 972 53 6 700 1665 614228434 614227464 0.000000e+00 1456.0
5 TraesCS5B01G431900 chr5A 94.020 903 43 6 597 1489 613935480 613934579 0.000000e+00 1358.0
6 TraesCS5B01G431900 chr5A 92.763 456 32 1 1979 2434 613934485 613934031 0.000000e+00 658.0
7 TraesCS5B01G431900 chr5A 84.520 562 78 8 3 559 613936037 613935480 4.580000e-152 547.0
8 TraesCS5B01G431900 chr5D 94.564 791 39 2 700 1489 491669483 491668696 0.000000e+00 1219.0
9 TraesCS5B01G431900 chr5D 81.637 452 43 9 1993 2435 491668601 491668181 3.000000e-89 339.0
10 TraesCS5B01G431900 chr5D 89.256 121 8 3 1765 1883 491668724 491668607 1.950000e-31 147.0
11 TraesCS5B01G431900 chr4A 83.673 294 46 2 2036 2328 549920724 549920432 2.380000e-70 276.0
12 TraesCS5B01G431900 chr4A 83.103 290 48 1 2040 2328 96276659 96276370 1.860000e-66 263.0
13 TraesCS5B01G431900 chr4A 89.474 76 5 3 1695 1769 116234554 116234481 2.580000e-15 93.5
14 TraesCS5B01G431900 chr3A 83.162 291 48 1 2039 2328 29033374 29033664 5.160000e-67 265.0
15 TraesCS5B01G431900 chr2A 83.219 292 46 3 2039 2328 636591033 636590743 5.160000e-67 265.0
16 TraesCS5B01G431900 chr2A 82.373 295 50 2 2036 2328 737292503 737292797 3.110000e-64 255.0
17 TraesCS5B01G431900 chr2A 82.534 292 46 5 2040 2328 735967425 735967136 4.020000e-63 252.0
18 TraesCS5B01G431900 chr2A 88.312 77 7 1 1695 1769 117393207 117393131 9.270000e-15 91.6
19 TraesCS5B01G431900 chr1B 82.818 291 49 1 2039 2328 115956491 115956201 2.400000e-65 259.0
20 TraesCS5B01G431900 chr1B 92.453 106 7 1 1885 1990 536657410 536657514 1.510000e-32 150.0
21 TraesCS5B01G431900 chr1B 89.333 75 7 1 1695 1769 306072075 306072148 2.580000e-15 93.5
22 TraesCS5B01G431900 chr4B 82.253 293 47 3 2039 2328 427490078 427489788 5.200000e-62 248.0
23 TraesCS5B01G431900 chr4B 88.608 79 9 0 1691 1769 22628211 22628133 1.990000e-16 97.1
24 TraesCS5B01G431900 chr2B 95.050 101 3 2 1885 1985 66782564 66782662 9.010000e-35 158.0
25 TraesCS5B01G431900 chr2B 95.050 101 3 2 1885 1985 159487897 159487995 9.010000e-35 158.0
26 TraesCS5B01G431900 chr2B 92.661 109 6 2 1885 1992 664215172 664215279 3.240000e-34 156.0
27 TraesCS5B01G431900 chr7B 94.175 103 4 2 1885 1986 421056964 421056863 3.240000e-34 156.0
28 TraesCS5B01G431900 chr6D 94.175 103 4 2 1885 1986 466538225 466538124 3.240000e-34 156.0
29 TraesCS5B01G431900 chr3B 93.333 105 6 1 1885 1989 629921470 629921367 1.170000e-33 154.0
30 TraesCS5B01G431900 chr6B 92.523 107 5 3 1885 1991 651412726 651412623 1.510000e-32 150.0
31 TraesCS5B01G431900 chr6B 89.333 75 8 0 1695 1769 536704340 536704414 7.170000e-16 95.3
32 TraesCS5B01G431900 chr1D 78.947 190 32 7 451 638 416799095 416798912 3.290000e-24 122.0
33 TraesCS5B01G431900 chr1A 89.873 79 8 0 1691 1769 368747748 368747826 4.280000e-18 102.0
34 TraesCS5B01G431900 chr7A 89.333 75 8 0 1695 1769 214815482 214815408 7.170000e-16 95.3
35 TraesCS5B01G431900 chr7A 77.778 117 22 3 522 638 571256418 571256306 4.340000e-08 69.4
36 TraesCS5B01G431900 chr2D 89.333 75 8 0 1695 1769 128025772 128025846 7.170000e-16 95.3
37 TraesCS5B01G431900 chr2D 89.474 76 5 3 1695 1769 88054019 88054092 2.580000e-15 93.5
38 TraesCS5B01G431900 chrUn 78.947 133 17 8 509 638 214923130 214923254 2.010000e-11 80.5
39 TraesCS5B01G431900 chrUn 95.745 47 1 1 592 638 351763332 351763287 9.340000e-10 75.0
40 TraesCS5B01G431900 chrUn 95.745 47 1 1 592 638 354053231 354053186 9.340000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G431900 chr5B 606587407 606589841 2434 True 4497.000000 4497 100.000000 1 2435 1 chr5B.!!$R3 2434
1 TraesCS5B01G431900 chr5B 606595661 606596682 1021 True 1519.000000 1519 93.750000 700 1706 1 chr5B.!!$R4 1006
2 TraesCS5B01G431900 chr5A 614227464 614228434 970 True 1456.000000 1456 93.827000 700 1665 1 chr5A.!!$R1 965
3 TraesCS5B01G431900 chr5A 613934031 613936037 2006 True 854.333333 1358 90.434333 3 2434 3 chr5A.!!$R2 2431
4 TraesCS5B01G431900 chr5D 491668181 491669483 1302 True 568.333333 1219 88.485667 700 2435 3 chr5D.!!$R1 1735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
541 547 0.387565 TTGGGTTTTTCGAAGCAGCC 59.612 50.0 16.26 16.26 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1864 1903 0.037303 CATGGCCGGCTTCATATCCT 59.963 55.0 28.56 0.0 0.0 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.785453 CAACCCTGGCCGCTCCTC 62.785 72.222 0.00 0.00 35.26 3.71
36 37 1.305046 TCCGGTCCACCTCCTTCTC 60.305 63.158 0.00 0.00 0.00 2.87
59 60 1.952102 CTACCTTTCTACGCCCGCCA 61.952 60.000 0.00 0.00 0.00 5.69
61 62 2.264794 CTTTCTACGCCCGCCACT 59.735 61.111 0.00 0.00 0.00 4.00
168 171 4.645921 GCAACAACTGGCGGGCAC 62.646 66.667 0.00 0.00 0.00 5.01
267 270 5.368989 GACTCCATGGTCGGAAGATTTAAT 58.631 41.667 12.58 0.00 45.19 1.40
269 272 3.882888 TCCATGGTCGGAAGATTTAATGC 59.117 43.478 12.58 0.00 45.19 3.56
275 278 5.163248 TGGTCGGAAGATTTAATGCCAGATA 60.163 40.000 0.00 0.00 45.19 1.98
276 279 5.763204 GGTCGGAAGATTTAATGCCAGATAA 59.237 40.000 0.00 0.00 45.19 1.75
310 313 0.537371 CCGAGGACCTGGTTGCTTTT 60.537 55.000 0.00 0.00 0.00 2.27
311 314 1.318576 CGAGGACCTGGTTGCTTTTT 58.681 50.000 0.00 0.00 0.00 1.94
315 318 4.202070 CGAGGACCTGGTTGCTTTTTAAAA 60.202 41.667 0.00 0.00 0.00 1.52
326 329 8.411683 TGGTTGCTTTTTAAAAATGATTGCAAT 58.588 25.926 26.48 12.83 36.84 3.56
332 335 9.480538 CTTTTTAAAAATGATTGCAATGATCCG 57.519 29.630 18.59 0.00 0.00 4.18
334 337 7.754069 TTAAAAATGATTGCAATGATCCGAC 57.246 32.000 18.59 0.44 0.00 4.79
336 339 5.587388 AAATGATTGCAATGATCCGACTT 57.413 34.783 18.59 1.62 0.00 3.01
343 346 6.567687 TTGCAATGATCCGACTTCTTTTTA 57.432 33.333 0.00 0.00 0.00 1.52
362 365 8.205512 TCTTTTTAAAAATGTTTGTAGGGACCC 58.794 33.333 13.55 0.59 0.00 4.46
367 370 2.483014 TGTTTGTAGGGACCCGATTG 57.517 50.000 4.40 0.00 0.00 2.67
369 372 2.027561 TGTTTGTAGGGACCCGATTGAG 60.028 50.000 4.40 0.00 0.00 3.02
403 407 9.917129 AATTTTGTAGGGTTTATTCCGTAAAAG 57.083 29.630 0.00 0.00 34.23 2.27
447 453 2.900547 GCCCCACATGCCAGTTAAT 58.099 52.632 0.00 0.00 0.00 1.40
448 454 0.461135 GCCCCACATGCCAGTTAATG 59.539 55.000 0.00 0.00 0.00 1.90
461 467 4.860907 GCCAGTTAATGCTCAAACAATCAG 59.139 41.667 0.00 0.00 0.00 2.90
471 477 5.177511 TGCTCAAACAATCAGTTCTCTTACG 59.822 40.000 0.00 0.00 40.26 3.18
475 481 2.987149 ACAATCAGTTCTCTTACGTGCG 59.013 45.455 0.00 0.00 0.00 5.34
481 487 4.832608 CTCTTACGTGCGGCCCCC 62.833 72.222 0.00 0.00 0.00 5.40
483 489 4.708386 CTTACGTGCGGCCCCCAA 62.708 66.667 0.00 0.00 0.00 4.12
497 503 2.616842 GCCCCCAACTGTTATAATCACG 59.383 50.000 0.00 0.00 0.00 4.35
515 521 7.609760 AATCACGATCAATTGTAAAGCACTA 57.390 32.000 5.13 0.00 0.00 2.74
516 522 7.792374 ATCACGATCAATTGTAAAGCACTAT 57.208 32.000 5.13 0.00 0.00 2.12
517 523 7.003939 TCACGATCAATTGTAAAGCACTATG 57.996 36.000 5.13 0.00 0.00 2.23
518 524 6.593770 TCACGATCAATTGTAAAGCACTATGT 59.406 34.615 5.13 0.00 0.00 2.29
532 538 8.601845 AAAGCACTATGTTATTTGGGTTTTTC 57.398 30.769 0.00 0.00 0.00 2.29
536 542 7.061789 GCACTATGTTATTTGGGTTTTTCGAAG 59.938 37.037 0.00 0.00 0.00 3.79
541 547 0.387565 TTGGGTTTTTCGAAGCAGCC 59.612 50.000 16.26 16.26 0.00 4.85
543 549 1.512156 GGGTTTTTCGAAGCAGCCGA 61.512 55.000 10.19 0.00 0.00 5.54
553 559 1.320344 AAGCAGCCGACCTCGATACA 61.320 55.000 0.00 0.00 43.02 2.29
554 560 1.109920 AGCAGCCGACCTCGATACAT 61.110 55.000 0.00 0.00 43.02 2.29
559 565 1.607628 GCCGACCTCGATACATGTAGT 59.392 52.381 11.91 3.06 43.02 2.73
560 566 2.034305 GCCGACCTCGATACATGTAGTT 59.966 50.000 11.91 0.00 43.02 2.24
562 568 4.082895 GCCGACCTCGATACATGTAGTTAT 60.083 45.833 11.91 0.00 43.02 1.89
563 569 5.629097 CCGACCTCGATACATGTAGTTATC 58.371 45.833 11.91 4.08 43.02 1.75
564 570 5.180680 CCGACCTCGATACATGTAGTTATCA 59.819 44.000 11.91 0.00 43.02 2.15
565 571 6.078479 CGACCTCGATACATGTAGTTATCAC 58.922 44.000 11.91 0.85 43.02 3.06
566 572 6.328641 ACCTCGATACATGTAGTTATCACC 57.671 41.667 11.91 0.00 0.00 4.02
567 573 5.831525 ACCTCGATACATGTAGTTATCACCA 59.168 40.000 11.91 0.00 0.00 4.17
568 574 6.322969 ACCTCGATACATGTAGTTATCACCAA 59.677 38.462 11.91 0.00 0.00 3.67
569 575 6.641314 CCTCGATACATGTAGTTATCACCAAC 59.359 42.308 11.91 0.00 0.00 3.77
570 576 7.102847 TCGATACATGTAGTTATCACCAACA 57.897 36.000 11.91 0.00 0.00 3.33
571 577 7.548967 TCGATACATGTAGTTATCACCAACAA 58.451 34.615 11.91 0.00 0.00 2.83
572 578 8.035984 TCGATACATGTAGTTATCACCAACAAA 58.964 33.333 11.91 0.00 0.00 2.83
573 579 8.114290 CGATACATGTAGTTATCACCAACAAAC 58.886 37.037 11.91 0.00 0.00 2.93
574 580 8.856153 ATACATGTAGTTATCACCAACAAACA 57.144 30.769 11.91 0.00 33.71 2.83
575 581 7.575414 ACATGTAGTTATCACCAACAAACAA 57.425 32.000 0.00 0.00 33.24 2.83
576 582 8.001881 ACATGTAGTTATCACCAACAAACAAA 57.998 30.769 0.00 0.00 33.24 2.83
577 583 8.637986 ACATGTAGTTATCACCAACAAACAAAT 58.362 29.630 0.00 0.00 33.24 2.32
578 584 9.474920 CATGTAGTTATCACCAACAAACAAATT 57.525 29.630 0.00 0.00 33.24 1.82
580 586 9.877178 TGTAGTTATCACCAACAAACAAATTTT 57.123 25.926 0.00 0.00 0.00 1.82
629 635 7.699566 TGACCCGAATTGTAATAGTTTTATGC 58.300 34.615 0.00 0.00 0.00 3.14
648 654 4.921470 TGCTATTTACTTCACGAACTGC 57.079 40.909 0.00 0.00 0.00 4.40
653 659 2.882927 TACTTCACGAACTGCTGTGT 57.117 45.000 0.00 0.00 37.38 3.72
672 679 1.261619 GTGTTGCACTCGAGAAGTTGG 59.738 52.381 21.68 2.21 35.45 3.77
687 694 9.745880 TCGAGAAGTTGGAGTTAATTGATATAC 57.254 33.333 0.00 0.00 0.00 1.47
692 699 8.433421 AGTTGGAGTTAATTGATATACAACCG 57.567 34.615 8.84 0.00 41.52 4.44
845 855 0.606604 TCTTGTCGACTGTTAGCCCC 59.393 55.000 17.92 0.00 0.00 5.80
932 942 2.542618 CGATTCCGACATCTCTCCACAG 60.543 54.545 0.00 0.00 38.22 3.66
983 993 2.740981 CAGAAGCAGAAAGTGTAGCTGG 59.259 50.000 0.00 0.00 37.41 4.85
1132 1165 1.122632 TACCACCGTGCCTTCAGGAA 61.123 55.000 0.00 0.00 37.39 3.36
1317 1350 2.266055 GTGCTCCAGAGGTTCGGG 59.734 66.667 0.00 0.00 32.73 5.14
1374 1407 4.253257 GGCCGACTCTACGCTCCG 62.253 72.222 0.00 0.00 0.00 4.63
1405 1438 2.926420 GCGTGCGGTTTCCCCAAAT 61.926 57.895 0.00 0.00 0.00 2.32
1493 1526 5.826737 ACTGAGAATAATTCAGGCTCCATTG 59.173 40.000 7.13 0.00 31.98 2.82
1505 1538 2.053627 GCTCCATTGCAGAAAACAACG 58.946 47.619 0.00 0.00 0.00 4.10
1671 1710 7.417456 GGTTGAAATTTCTGTACTTTGTTCCCT 60.417 37.037 18.64 0.00 0.00 4.20
1672 1711 7.654022 TGAAATTTCTGTACTTTGTTCCCTT 57.346 32.000 18.64 0.00 0.00 3.95
1673 1712 7.488322 TGAAATTTCTGTACTTTGTTCCCTTG 58.512 34.615 18.64 0.00 0.00 3.61
1674 1713 7.340743 TGAAATTTCTGTACTTTGTTCCCTTGA 59.659 33.333 18.64 0.00 0.00 3.02
1675 1714 6.884280 ATTTCTGTACTTTGTTCCCTTGAG 57.116 37.500 0.00 0.00 0.00 3.02
1676 1715 5.623956 TTCTGTACTTTGTTCCCTTGAGA 57.376 39.130 0.00 0.00 0.00 3.27
1677 1716 5.215252 TCTGTACTTTGTTCCCTTGAGAG 57.785 43.478 0.00 0.00 0.00 3.20
1678 1717 3.740115 TGTACTTTGTTCCCTTGAGAGC 58.260 45.455 0.00 0.00 0.00 4.09
1679 1718 2.278332 ACTTTGTTCCCTTGAGAGCC 57.722 50.000 0.00 0.00 0.00 4.70
1680 1719 1.494721 ACTTTGTTCCCTTGAGAGCCA 59.505 47.619 0.00 0.00 0.00 4.75
1681 1720 2.091885 ACTTTGTTCCCTTGAGAGCCAA 60.092 45.455 0.00 0.00 0.00 4.52
1682 1721 1.981256 TTGTTCCCTTGAGAGCCAAC 58.019 50.000 0.00 0.00 0.00 3.77
1683 1722 0.843309 TGTTCCCTTGAGAGCCAACA 59.157 50.000 0.00 0.00 0.00 3.33
1684 1723 1.425066 TGTTCCCTTGAGAGCCAACAT 59.575 47.619 0.00 0.00 0.00 2.71
1685 1724 1.815003 GTTCCCTTGAGAGCCAACATG 59.185 52.381 0.00 0.00 0.00 3.21
1686 1725 0.329261 TCCCTTGAGAGCCAACATGG 59.671 55.000 0.00 0.00 41.55 3.66
1697 1736 1.771565 CCAACATGGCATGGATCAGT 58.228 50.000 29.49 6.31 39.12 3.41
1698 1737 2.104967 CCAACATGGCATGGATCAGTT 58.895 47.619 29.49 12.14 39.12 3.16
1699 1738 2.100252 CCAACATGGCATGGATCAGTTC 59.900 50.000 29.49 0.00 39.12 3.01
1700 1739 3.021695 CAACATGGCATGGATCAGTTCT 58.978 45.455 29.49 4.05 33.60 3.01
1701 1740 3.377253 ACATGGCATGGATCAGTTCTT 57.623 42.857 29.49 3.29 33.60 2.52
1702 1741 3.705051 ACATGGCATGGATCAGTTCTTT 58.295 40.909 29.49 2.76 33.60 2.52
1703 1742 4.091549 ACATGGCATGGATCAGTTCTTTT 58.908 39.130 29.49 2.55 33.60 2.27
1704 1743 4.081862 ACATGGCATGGATCAGTTCTTTTG 60.082 41.667 29.49 2.24 33.60 2.44
1705 1744 2.827322 TGGCATGGATCAGTTCTTTTGG 59.173 45.455 0.00 0.00 0.00 3.28
1706 1745 2.417787 GGCATGGATCAGTTCTTTTGGC 60.418 50.000 0.00 0.00 0.00 4.52
1707 1746 2.231964 GCATGGATCAGTTCTTTTGGCA 59.768 45.455 0.00 0.00 0.00 4.92
1708 1747 3.675228 GCATGGATCAGTTCTTTTGGCAG 60.675 47.826 0.00 0.00 0.00 4.85
1709 1748 1.888512 TGGATCAGTTCTTTTGGCAGC 59.111 47.619 0.00 0.00 0.00 5.25
1710 1749 2.165998 GGATCAGTTCTTTTGGCAGCT 58.834 47.619 0.00 0.00 0.00 4.24
1711 1750 2.560105 GGATCAGTTCTTTTGGCAGCTT 59.440 45.455 0.00 0.00 0.00 3.74
1712 1751 3.758554 GGATCAGTTCTTTTGGCAGCTTA 59.241 43.478 0.00 0.00 0.00 3.09
1713 1752 4.218417 GGATCAGTTCTTTTGGCAGCTTAA 59.782 41.667 0.00 0.00 0.00 1.85
1714 1753 5.278957 GGATCAGTTCTTTTGGCAGCTTAAA 60.279 40.000 0.00 0.00 0.00 1.52
1715 1754 5.590530 TCAGTTCTTTTGGCAGCTTAAAA 57.409 34.783 0.00 0.33 0.00 1.52
1716 1755 5.971763 TCAGTTCTTTTGGCAGCTTAAAAA 58.028 33.333 8.69 5.67 0.00 1.94
1734 1773 3.602205 AAAATAAGCCATCTCCTCCCC 57.398 47.619 0.00 0.00 0.00 4.81
1735 1774 2.212752 AATAAGCCATCTCCTCCCCA 57.787 50.000 0.00 0.00 0.00 4.96
1736 1775 1.739750 ATAAGCCATCTCCTCCCCAG 58.260 55.000 0.00 0.00 0.00 4.45
1737 1776 1.056700 TAAGCCATCTCCTCCCCAGC 61.057 60.000 0.00 0.00 0.00 4.85
1738 1777 2.771762 GCCATCTCCTCCCCAGCT 60.772 66.667 0.00 0.00 0.00 4.24
1739 1778 2.381941 GCCATCTCCTCCCCAGCTT 61.382 63.158 0.00 0.00 0.00 3.74
1740 1779 1.931007 GCCATCTCCTCCCCAGCTTT 61.931 60.000 0.00 0.00 0.00 3.51
1741 1780 0.627986 CCATCTCCTCCCCAGCTTTT 59.372 55.000 0.00 0.00 0.00 2.27
1742 1781 1.409381 CCATCTCCTCCCCAGCTTTTC 60.409 57.143 0.00 0.00 0.00 2.29
1743 1782 1.563410 CATCTCCTCCCCAGCTTTTCT 59.437 52.381 0.00 0.00 0.00 2.52
1744 1783 1.280457 TCTCCTCCCCAGCTTTTCTC 58.720 55.000 0.00 0.00 0.00 2.87
1745 1784 0.987294 CTCCTCCCCAGCTTTTCTCA 59.013 55.000 0.00 0.00 0.00 3.27
1746 1785 1.563410 CTCCTCCCCAGCTTTTCTCAT 59.437 52.381 0.00 0.00 0.00 2.90
1747 1786 2.774234 CTCCTCCCCAGCTTTTCTCATA 59.226 50.000 0.00 0.00 0.00 2.15
1748 1787 3.189606 TCCTCCCCAGCTTTTCTCATAA 58.810 45.455 0.00 0.00 0.00 1.90
1749 1788 3.200825 TCCTCCCCAGCTTTTCTCATAAG 59.799 47.826 0.00 0.00 0.00 1.73
1750 1789 2.948315 CTCCCCAGCTTTTCTCATAAGC 59.052 50.000 0.00 0.00 46.47 3.09
1758 1797 5.228579 GCTTTTCTCATAAGCTGTCTTCC 57.771 43.478 0.00 0.00 43.56 3.46
1759 1798 4.940654 GCTTTTCTCATAAGCTGTCTTCCT 59.059 41.667 0.00 0.00 43.56 3.36
1760 1799 5.064579 GCTTTTCTCATAAGCTGTCTTCCTC 59.935 44.000 0.00 0.00 43.56 3.71
1761 1800 5.745312 TTTCTCATAAGCTGTCTTCCTCA 57.255 39.130 0.00 0.00 33.85 3.86
1762 1801 5.946942 TTCTCATAAGCTGTCTTCCTCAT 57.053 39.130 0.00 0.00 33.85 2.90
1763 1802 5.946942 TCTCATAAGCTGTCTTCCTCATT 57.053 39.130 0.00 0.00 33.85 2.57
1764 1803 5.911752 TCTCATAAGCTGTCTTCCTCATTC 58.088 41.667 0.00 0.00 33.85 2.67
1765 1804 5.423290 TCTCATAAGCTGTCTTCCTCATTCA 59.577 40.000 0.00 0.00 33.85 2.57
1766 1805 6.099413 TCTCATAAGCTGTCTTCCTCATTCAT 59.901 38.462 0.00 0.00 33.85 2.57
1767 1806 6.656902 TCATAAGCTGTCTTCCTCATTCATT 58.343 36.000 0.00 0.00 33.85 2.57
1768 1807 6.541278 TCATAAGCTGTCTTCCTCATTCATTG 59.459 38.462 0.00 0.00 33.85 2.82
1769 1808 4.564782 AGCTGTCTTCCTCATTCATTGA 57.435 40.909 0.00 0.00 0.00 2.57
1770 1809 4.914983 AGCTGTCTTCCTCATTCATTGAA 58.085 39.130 0.75 0.75 32.78 2.69
1771 1810 4.942483 AGCTGTCTTCCTCATTCATTGAAG 59.058 41.667 5.21 0.00 36.42 3.02
1772 1811 4.940046 GCTGTCTTCCTCATTCATTGAAGA 59.060 41.667 5.21 0.00 40.51 2.87
1776 1815 6.364568 TCTTCCTCATTCATTGAAGACTGA 57.635 37.500 5.21 3.51 38.55 3.41
1777 1816 6.955364 TCTTCCTCATTCATTGAAGACTGAT 58.045 36.000 5.21 0.00 38.55 2.90
1778 1817 8.082672 TCTTCCTCATTCATTGAAGACTGATA 57.917 34.615 5.21 0.00 38.55 2.15
1779 1818 8.542926 TCTTCCTCATTCATTGAAGACTGATAA 58.457 33.333 5.21 2.18 38.55 1.75
1780 1819 9.339850 CTTCCTCATTCATTGAAGACTGATAAT 57.660 33.333 5.21 0.00 37.07 1.28
1788 1827 9.605275 TTCATTGAAGACTGATAATAACTCAGG 57.395 33.333 5.41 0.00 43.58 3.86
1794 1833 6.155475 GACTGATAATAACTCAGGCTCTGT 57.845 41.667 5.41 0.00 44.04 3.41
1795 1834 6.552445 ACTGATAATAACTCAGGCTCTGTT 57.448 37.500 5.41 6.83 43.58 3.16
1796 1835 6.951971 ACTGATAATAACTCAGGCTCTGTTT 58.048 36.000 6.91 1.39 43.58 2.83
1797 1836 6.820656 ACTGATAATAACTCAGGCTCTGTTTG 59.179 38.462 6.91 0.00 43.58 2.93
1798 1837 5.586243 TGATAATAACTCAGGCTCTGTTTGC 59.414 40.000 6.91 0.00 32.61 3.68
1799 1838 2.928801 TAACTCAGGCTCTGTTTGCA 57.071 45.000 6.91 0.00 32.61 4.08
1800 1839 2.283145 AACTCAGGCTCTGTTTGCAT 57.717 45.000 0.00 0.00 32.61 3.96
1801 1840 2.283145 ACTCAGGCTCTGTTTGCATT 57.717 45.000 0.00 0.00 32.61 3.56
1802 1841 1.884579 ACTCAGGCTCTGTTTGCATTG 59.115 47.619 0.00 0.00 32.61 2.82
1803 1842 2.156917 CTCAGGCTCTGTTTGCATTGA 58.843 47.619 0.00 0.00 32.61 2.57
1804 1843 2.753452 CTCAGGCTCTGTTTGCATTGAT 59.247 45.455 0.00 0.00 32.61 2.57
1805 1844 3.943381 CTCAGGCTCTGTTTGCATTGATA 59.057 43.478 0.00 0.00 32.61 2.15
1806 1845 4.529897 TCAGGCTCTGTTTGCATTGATAT 58.470 39.130 0.00 0.00 32.61 1.63
1807 1846 4.951715 TCAGGCTCTGTTTGCATTGATATT 59.048 37.500 0.00 0.00 32.61 1.28
1808 1847 5.419788 TCAGGCTCTGTTTGCATTGATATTT 59.580 36.000 0.00 0.00 32.61 1.40
1809 1848 5.747197 CAGGCTCTGTTTGCATTGATATTTC 59.253 40.000 0.00 0.00 0.00 2.17
1810 1849 5.655532 AGGCTCTGTTTGCATTGATATTTCT 59.344 36.000 0.00 0.00 0.00 2.52
1811 1850 5.747197 GGCTCTGTTTGCATTGATATTTCTG 59.253 40.000 0.00 0.00 0.00 3.02
1812 1851 6.327934 GCTCTGTTTGCATTGATATTTCTGT 58.672 36.000 0.00 0.00 0.00 3.41
1813 1852 6.471519 GCTCTGTTTGCATTGATATTTCTGTC 59.528 38.462 0.00 0.00 0.00 3.51
1814 1853 7.627939 GCTCTGTTTGCATTGATATTTCTGTCT 60.628 37.037 0.00 0.00 0.00 3.41
1815 1854 8.114331 TCTGTTTGCATTGATATTTCTGTCTT 57.886 30.769 0.00 0.00 0.00 3.01
1816 1855 8.579006 TCTGTTTGCATTGATATTTCTGTCTTT 58.421 29.630 0.00 0.00 0.00 2.52
1817 1856 9.199982 CTGTTTGCATTGATATTTCTGTCTTTT 57.800 29.630 0.00 0.00 0.00 2.27
1818 1857 9.545105 TGTTTGCATTGATATTTCTGTCTTTTT 57.455 25.926 0.00 0.00 0.00 1.94
1855 1894 9.666626 TTTTTATATTTTCGAAGAAAAGACGCA 57.333 25.926 12.53 0.00 45.90 5.24
1856 1895 9.666626 TTTTATATTTTCGAAGAAAAGACGCAA 57.333 25.926 12.53 3.06 45.90 4.85
1857 1896 9.834628 TTTATATTTTCGAAGAAAAGACGCAAT 57.165 25.926 12.53 0.00 45.90 3.56
1859 1898 8.822105 ATATTTTCGAAGAAAAGACGCAATAC 57.178 30.769 12.53 0.00 45.90 1.89
1860 1899 5.660629 TTTCGAAGAAAAGACGCAATACA 57.339 34.783 0.00 0.00 45.90 2.29
1861 1900 5.660629 TTCGAAGAAAAGACGCAATACAA 57.339 34.783 0.00 0.00 45.90 2.41
1862 1901 5.856126 TCGAAGAAAAGACGCAATACAAT 57.144 34.783 0.00 0.00 0.00 2.71
1863 1902 6.954616 TCGAAGAAAAGACGCAATACAATA 57.045 33.333 0.00 0.00 0.00 1.90
1864 1903 7.354025 TCGAAGAAAAGACGCAATACAATAA 57.646 32.000 0.00 0.00 0.00 1.40
1865 1904 7.453034 TCGAAGAAAAGACGCAATACAATAAG 58.547 34.615 0.00 0.00 0.00 1.73
1866 1905 6.682863 CGAAGAAAAGACGCAATACAATAAGG 59.317 38.462 0.00 0.00 0.00 2.69
1867 1906 7.412563 CGAAGAAAAGACGCAATACAATAAGGA 60.413 37.037 0.00 0.00 0.00 3.36
1868 1907 7.865706 AGAAAAGACGCAATACAATAAGGAT 57.134 32.000 0.00 0.00 0.00 3.24
1869 1908 8.958119 AGAAAAGACGCAATACAATAAGGATA 57.042 30.769 0.00 0.00 0.00 2.59
1870 1909 9.561069 AGAAAAGACGCAATACAATAAGGATAT 57.439 29.630 0.00 0.00 0.00 1.63
1871 1910 9.599322 GAAAAGACGCAATACAATAAGGATATG 57.401 33.333 0.00 0.00 0.00 1.78
1872 1911 8.902540 AAAGACGCAATACAATAAGGATATGA 57.097 30.769 0.00 0.00 0.00 2.15
1873 1912 8.902540 AAGACGCAATACAATAAGGATATGAA 57.097 30.769 0.00 0.00 0.00 2.57
1874 1913 8.539770 AGACGCAATACAATAAGGATATGAAG 57.460 34.615 0.00 0.00 0.00 3.02
1875 1914 7.118390 AGACGCAATACAATAAGGATATGAAGC 59.882 37.037 0.00 0.00 0.00 3.86
1876 1915 6.149474 ACGCAATACAATAAGGATATGAAGCC 59.851 38.462 0.00 0.00 0.00 4.35
1877 1916 6.546395 GCAATACAATAAGGATATGAAGCCG 58.454 40.000 0.00 0.00 35.82 5.52
1878 1917 6.403636 GCAATACAATAAGGATATGAAGCCGG 60.404 42.308 0.00 0.00 35.82 6.13
1879 1918 3.412386 ACAATAAGGATATGAAGCCGGC 58.588 45.455 21.89 21.89 35.82 6.13
1880 1919 2.749621 CAATAAGGATATGAAGCCGGCC 59.250 50.000 26.15 9.73 35.82 6.13
1881 1920 1.429930 TAAGGATATGAAGCCGGCCA 58.570 50.000 26.15 16.30 35.82 5.36
1882 1921 0.773644 AAGGATATGAAGCCGGCCAT 59.226 50.000 26.15 22.45 35.82 4.40
1883 1922 0.037303 AGGATATGAAGCCGGCCATG 59.963 55.000 26.15 0.00 35.82 3.66
1884 1923 0.250901 GGATATGAAGCCGGCCATGT 60.251 55.000 26.15 18.62 0.00 3.21
1885 1924 1.160137 GATATGAAGCCGGCCATGTC 58.840 55.000 26.15 22.68 0.00 3.06
1886 1925 0.250901 ATATGAAGCCGGCCATGTCC 60.251 55.000 26.15 6.60 0.00 4.02
1887 1926 2.337879 TATGAAGCCGGCCATGTCCC 62.338 60.000 26.15 5.05 0.00 4.46
1888 1927 4.115199 GAAGCCGGCCATGTCCCT 62.115 66.667 26.15 0.00 0.00 4.20
1889 1928 4.115199 AAGCCGGCCATGTCCCTC 62.115 66.667 26.15 0.00 0.00 4.30
1893 1932 4.530857 CGGCCATGTCCCTCCGTC 62.531 72.222 2.24 0.00 37.33 4.79
1894 1933 4.176752 GGCCATGTCCCTCCGTCC 62.177 72.222 0.00 0.00 0.00 4.79
1895 1934 4.176752 GCCATGTCCCTCCGTCCC 62.177 72.222 0.00 0.00 0.00 4.46
1896 1935 2.687200 CCATGTCCCTCCGTCCCA 60.687 66.667 0.00 0.00 0.00 4.37
1897 1936 2.297895 CCATGTCCCTCCGTCCCAA 61.298 63.158 0.00 0.00 0.00 4.12
1898 1937 1.682849 CATGTCCCTCCGTCCCAAA 59.317 57.895 0.00 0.00 0.00 3.28
1899 1938 0.037590 CATGTCCCTCCGTCCCAAAA 59.962 55.000 0.00 0.00 0.00 2.44
1900 1939 0.999712 ATGTCCCTCCGTCCCAAAAT 59.000 50.000 0.00 0.00 0.00 1.82
1901 1940 1.659022 TGTCCCTCCGTCCCAAAATA 58.341 50.000 0.00 0.00 0.00 1.40
1902 1941 1.986631 TGTCCCTCCGTCCCAAAATAA 59.013 47.619 0.00 0.00 0.00 1.40
1903 1942 2.026636 TGTCCCTCCGTCCCAAAATAAG 60.027 50.000 0.00 0.00 0.00 1.73
1904 1943 2.026542 GTCCCTCCGTCCCAAAATAAGT 60.027 50.000 0.00 0.00 0.00 2.24
1905 1944 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
1906 1945 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
1907 1946 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
1908 1947 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
1909 1948 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
1910 1949 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
1911 1950 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
1912 1951 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
1913 1952 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
1914 1953 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
1915 1954 5.241728 GTCCCAAAATAAGTGTCTTGAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
1916 1955 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
1917 1956 6.655003 TCCCAAAATAAGTGTCTTGAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
1918 1957 6.431234 CCCAAAATAAGTGTCTTGAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
1919 1958 7.606456 CCCAAAATAAGTGTCTTGAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
1920 1959 8.443937 CCAAAATAAGTGTCTTGAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
1921 1960 8.988934 CAAAATAAGTGTCTTGAGCTTAGTACA 58.011 33.333 0.00 0.00 0.00 2.90
1922 1961 9.555727 AAAATAAGTGTCTTGAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
1923 1962 9.555727 AAATAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
1924 1963 9.726438 AATAAGTGTCTTGAGCTTAGTACAAAT 57.274 29.630 0.00 0.00 0.00 2.32
1925 1964 9.726438 ATAAGTGTCTTGAGCTTAGTACAAATT 57.274 29.630 0.00 0.00 0.00 1.82
1926 1965 8.451908 AAGTGTCTTGAGCTTAGTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
1927 1966 7.865707 AGTGTCTTGAGCTTAGTACAAATTTG 58.134 34.615 16.67 16.67 0.00 2.32
1928 1967 7.499232 AGTGTCTTGAGCTTAGTACAAATTTGT 59.501 33.333 25.99 25.99 44.86 2.83
1929 1968 8.770828 GTGTCTTGAGCTTAGTACAAATTTGTA 58.229 33.333 23.91 23.91 42.35 2.41
1954 1993 8.632906 ACTAGAGCTAGTACAAAGTTAAGACA 57.367 34.615 8.35 0.00 43.98 3.41
1955 1994 8.513774 ACTAGAGCTAGTACAAAGTTAAGACAC 58.486 37.037 8.35 0.00 43.98 3.67
1956 1995 7.527568 AGAGCTAGTACAAAGTTAAGACACT 57.472 36.000 0.00 0.00 0.00 3.55
1957 1996 7.953752 AGAGCTAGTACAAAGTTAAGACACTT 58.046 34.615 0.00 0.00 38.74 3.16
1958 1997 9.075678 AGAGCTAGTACAAAGTTAAGACACTTA 57.924 33.333 0.00 0.00 35.87 2.24
1959 1998 9.857957 GAGCTAGTACAAAGTTAAGACACTTAT 57.142 33.333 0.00 0.00 35.87 1.73
1960 1999 9.640963 AGCTAGTACAAAGTTAAGACACTTATG 57.359 33.333 0.00 0.00 35.87 1.90
1961 2000 9.635520 GCTAGTACAAAGTTAAGACACTTATGA 57.364 33.333 0.00 0.00 35.87 2.15
1967 2006 9.778741 ACAAAGTTAAGACACTTATGATTGAGA 57.221 29.630 0.00 0.00 35.87 3.27
1969 2008 8.467402 AAGTTAAGACACTTATGATTGAGACG 57.533 34.615 0.00 0.00 35.10 4.18
1970 2009 7.036220 AGTTAAGACACTTATGATTGAGACGG 58.964 38.462 0.00 0.00 0.00 4.79
1971 2010 5.661056 AAGACACTTATGATTGAGACGGA 57.339 39.130 0.00 0.00 0.00 4.69
1972 2011 5.255710 AGACACTTATGATTGAGACGGAG 57.744 43.478 0.00 0.00 0.00 4.63
1973 2012 4.950475 AGACACTTATGATTGAGACGGAGA 59.050 41.667 0.00 0.00 0.00 3.71
1974 2013 5.067153 AGACACTTATGATTGAGACGGAGAG 59.933 44.000 0.00 0.00 0.00 3.20
1975 2014 4.950475 ACACTTATGATTGAGACGGAGAGA 59.050 41.667 0.00 0.00 0.00 3.10
1976 2015 5.067153 ACACTTATGATTGAGACGGAGAGAG 59.933 44.000 0.00 0.00 0.00 3.20
1977 2016 5.067153 CACTTATGATTGAGACGGAGAGAGT 59.933 44.000 0.00 0.00 0.00 3.24
1978 2017 6.261158 CACTTATGATTGAGACGGAGAGAGTA 59.739 42.308 0.00 0.00 0.00 2.59
1979 2018 6.485313 ACTTATGATTGAGACGGAGAGAGTAG 59.515 42.308 0.00 0.00 0.00 2.57
1980 2019 4.223556 TGATTGAGACGGAGAGAGTAGT 57.776 45.455 0.00 0.00 0.00 2.73
1981 2020 5.354842 TGATTGAGACGGAGAGAGTAGTA 57.645 43.478 0.00 0.00 0.00 1.82
1982 2021 5.931294 TGATTGAGACGGAGAGAGTAGTAT 58.069 41.667 0.00 0.00 0.00 2.12
1983 2022 7.063934 TGATTGAGACGGAGAGAGTAGTATA 57.936 40.000 0.00 0.00 0.00 1.47
1984 2023 7.681679 TGATTGAGACGGAGAGAGTAGTATAT 58.318 38.462 0.00 0.00 0.00 0.86
1985 2024 8.813951 TGATTGAGACGGAGAGAGTAGTATATA 58.186 37.037 0.00 0.00 0.00 0.86
1986 2025 9.090692 GATTGAGACGGAGAGAGTAGTATATAC 57.909 40.741 4.60 4.60 0.00 1.47
1987 2026 6.619744 TGAGACGGAGAGAGTAGTATATACG 58.380 44.000 7.23 0.00 0.00 3.06
1988 2027 6.432472 TGAGACGGAGAGAGTAGTATATACGA 59.568 42.308 7.23 0.00 0.00 3.43
1989 2028 7.122501 TGAGACGGAGAGAGTAGTATATACGAT 59.877 40.741 7.23 0.00 0.00 3.73
1990 2029 7.839907 AGACGGAGAGAGTAGTATATACGATT 58.160 38.462 7.23 0.00 0.00 3.34
1991 2030 7.760794 AGACGGAGAGAGTAGTATATACGATTG 59.239 40.741 7.23 0.00 0.00 2.67
1992 2031 7.609960 ACGGAGAGAGTAGTATATACGATTGA 58.390 38.462 7.23 0.00 0.00 2.57
1993 2032 7.760794 ACGGAGAGAGTAGTATATACGATTGAG 59.239 40.741 7.23 0.00 0.00 3.02
1994 2033 7.975058 CGGAGAGAGTAGTATATACGATTGAGA 59.025 40.741 7.23 0.00 0.00 3.27
1995 2034 9.826574 GGAGAGAGTAGTATATACGATTGAGAT 57.173 37.037 7.23 0.00 0.00 2.75
2001 2040 9.727859 AGTAGTATATACGATTGAGATGTCTGT 57.272 33.333 7.23 0.00 0.00 3.41
2011 2050 9.046296 ACGATTGAGATGTCTGTATTTTATTCC 57.954 33.333 0.00 0.00 0.00 3.01
2012 2051 9.265901 CGATTGAGATGTCTGTATTTTATTCCT 57.734 33.333 0.00 0.00 0.00 3.36
2027 2066 8.593945 ATTTTATTCCTTTGAGAGCCAACATA 57.406 30.769 0.00 0.00 33.85 2.29
2054 2093 7.400052 ACATGATTTATAGGGCCTCTTTGTTTT 59.600 33.333 10.74 0.00 0.00 2.43
2058 2097 1.494960 AGGGCCTCTTTGTTTTGCAA 58.505 45.000 0.00 0.00 34.87 4.08
2085 2124 9.925268 GATTGCAAAAATGCATAAATAGGAAAG 57.075 29.630 1.71 0.00 44.94 2.62
2161 2209 8.443937 GTTTGATTGTATCACAGGAAGAACTAC 58.556 37.037 0.00 0.00 39.39 2.73
2178 2226 5.480772 AGAACTACGGATTTCTTCCAAGAGA 59.519 40.000 0.00 0.00 45.78 3.10
2182 2230 5.165961 ACGGATTTCTTCCAAGAGATTGA 57.834 39.130 0.00 0.00 45.78 2.57
2194 2242 5.877012 TCCAAGAGATTGAAGTGAATGCTAC 59.123 40.000 0.00 0.00 0.00 3.58
2221 2269 6.662865 TCCCATGAAATGTTGTACAAATGT 57.337 33.333 10.51 1.74 44.81 2.71
2278 2326 3.119743 ACGAATCGAACGACCAATGTAGA 60.120 43.478 10.55 0.00 34.70 2.59
2318 2366 9.487790 GATTCTAATCCTTGAGAACTCTTATGG 57.512 37.037 3.51 0.00 34.61 2.74
2426 2474 6.094048 CGGTCCAGGGCAAATAGATTATAATG 59.906 42.308 1.78 0.00 0.00 1.90
2428 2476 7.121315 GGTCCAGGGCAAATAGATTATAATGAC 59.879 40.741 1.78 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.608717 CTGAGAAGGAGGTGGACCGG 61.609 65.000 0.00 0.00 42.08 5.28
23 24 0.710588 TAGGCTGAGAAGGAGGTGGA 59.289 55.000 0.00 0.00 0.00 4.02
36 37 0.179081 GGGCGTAGAAAGGTAGGCTG 60.179 60.000 0.00 0.00 34.80 4.85
102 105 4.681978 GTCGCGTTGGCTGGTCCT 62.682 66.667 5.77 0.00 36.88 3.85
103 106 4.681978 AGTCGCGTTGGCTGGTCC 62.682 66.667 5.77 0.00 36.88 4.46
104 107 3.112709 GAGTCGCGTTGGCTGGTC 61.113 66.667 5.77 0.00 36.88 4.02
139 142 1.900981 TTGTTGCCACATGGGGTCG 60.901 57.895 17.28 0.00 37.04 4.79
141 144 1.114722 CAGTTGTTGCCACATGGGGT 61.115 55.000 17.28 0.00 37.04 4.95
147 150 3.215568 CCGCCAGTTGTTGCCACA 61.216 61.111 0.00 0.00 0.00 4.17
153 156 2.906897 CAGTGCCCGCCAGTTGTT 60.907 61.111 0.00 0.00 0.00 2.83
156 159 3.537206 GAGTCAGTGCCCGCCAGTT 62.537 63.158 0.00 0.00 0.00 3.16
157 160 4.008933 GAGTCAGTGCCCGCCAGT 62.009 66.667 0.00 0.00 0.00 4.00
244 247 2.990066 AATCTTCCGACCATGGAGTC 57.010 50.000 21.47 5.38 39.72 3.36
252 255 3.541632 TCTGGCATTAAATCTTCCGACC 58.458 45.455 0.00 0.00 0.00 4.79
253 256 6.483640 AGTTATCTGGCATTAAATCTTCCGAC 59.516 38.462 0.00 0.00 0.00 4.79
254 257 6.591935 AGTTATCTGGCATTAAATCTTCCGA 58.408 36.000 0.00 0.00 0.00 4.55
292 295 1.318576 AAAAAGCAACCAGGTCCTCG 58.681 50.000 0.00 0.00 0.00 4.63
293 296 4.929819 TTTAAAAAGCAACCAGGTCCTC 57.070 40.909 0.00 0.00 0.00 3.71
297 300 7.468494 GCAATCATTTTTAAAAAGCAACCAGGT 60.468 33.333 17.72 0.00 0.00 4.00
298 301 6.857451 GCAATCATTTTTAAAAAGCAACCAGG 59.143 34.615 17.72 5.19 0.00 4.45
299 302 7.416022 TGCAATCATTTTTAAAAAGCAACCAG 58.584 30.769 17.72 6.71 0.00 4.00
300 303 7.325660 TGCAATCATTTTTAAAAAGCAACCA 57.674 28.000 17.72 8.47 0.00 3.67
310 313 7.546358 AGTCGGATCATTGCAATCATTTTTAA 58.454 30.769 9.53 0.00 0.00 1.52
311 314 7.099266 AGTCGGATCATTGCAATCATTTTTA 57.901 32.000 9.53 0.00 0.00 1.52
315 318 4.885907 AGAAGTCGGATCATTGCAATCATT 59.114 37.500 9.53 0.00 0.00 2.57
326 329 9.810545 AAACATTTTTAAAAAGAAGTCGGATCA 57.189 25.926 17.72 0.00 0.00 2.92
336 339 8.205512 GGGTCCCTACAAACATTTTTAAAAAGA 58.794 33.333 17.72 4.17 0.00 2.52
343 346 3.834938 TCGGGTCCCTACAAACATTTTT 58.165 40.909 6.29 0.00 0.00 1.94
380 383 7.938490 AGACTTTTACGGAATAAACCCTACAAA 59.062 33.333 0.00 0.00 32.29 2.83
382 385 6.875195 CAGACTTTTACGGAATAAACCCTACA 59.125 38.462 0.00 0.00 32.29 2.74
383 386 6.875726 ACAGACTTTTACGGAATAAACCCTAC 59.124 38.462 0.00 0.00 32.29 3.18
396 400 4.444720 GTGTCTCTTCCACAGACTTTTACG 59.555 45.833 1.79 0.00 40.93 3.18
403 407 2.362397 TGTCAGTGTCTCTTCCACAGAC 59.638 50.000 8.55 8.55 44.72 3.51
439 445 6.017400 ACTGATTGTTTGAGCATTAACTGG 57.983 37.500 0.00 0.00 0.00 4.00
447 453 5.177511 CGTAAGAGAACTGATTGTTTGAGCA 59.822 40.000 0.00 0.00 38.35 4.26
448 454 5.177696 ACGTAAGAGAACTGATTGTTTGAGC 59.822 40.000 0.00 0.00 39.14 4.26
461 467 2.098831 GGGCCGCACGTAAGAGAAC 61.099 63.158 0.00 0.00 43.62 3.01
471 477 3.733295 TATAACAGTTGGGGGCCGCAC 62.733 57.143 24.36 17.52 0.00 5.34
475 481 2.956333 GTGATTATAACAGTTGGGGGCC 59.044 50.000 0.00 0.00 0.00 5.80
515 521 5.848406 TGCTTCGAAAAACCCAAATAACAT 58.152 33.333 0.00 0.00 0.00 2.71
516 522 5.263968 TGCTTCGAAAAACCCAAATAACA 57.736 34.783 0.00 0.00 0.00 2.41
517 523 4.149922 GCTGCTTCGAAAAACCCAAATAAC 59.850 41.667 0.00 0.00 0.00 1.89
518 524 4.303282 GCTGCTTCGAAAAACCCAAATAA 58.697 39.130 0.00 0.00 0.00 1.40
532 538 2.060004 TATCGAGGTCGGCTGCTTCG 62.060 60.000 12.86 12.86 40.29 3.79
536 542 0.941463 CATGTATCGAGGTCGGCTGC 60.941 60.000 0.00 0.00 40.29 5.25
541 547 6.078479 GTGATAACTACATGTATCGAGGTCG 58.922 44.000 5.91 0.00 41.45 4.79
543 549 5.831525 TGGTGATAACTACATGTATCGAGGT 59.168 40.000 5.91 0.00 0.00 3.85
554 560 9.877178 AAAATTTGTTTGTTGGTGATAACTACA 57.123 25.926 0.00 0.00 0.00 2.74
591 597 0.468400 CGGGTCAGGGGTTCCAAAAA 60.468 55.000 0.00 0.00 34.83 1.94
592 598 1.151908 CGGGTCAGGGGTTCCAAAA 59.848 57.895 0.00 0.00 34.83 2.44
593 599 1.354168 TTCGGGTCAGGGGTTCCAAA 61.354 55.000 0.00 0.00 34.83 3.28
594 600 1.137594 ATTCGGGTCAGGGGTTCCAA 61.138 55.000 0.00 0.00 34.83 3.53
595 601 1.137594 AATTCGGGTCAGGGGTTCCA 61.138 55.000 0.00 0.00 34.83 3.53
596 602 0.679960 CAATTCGGGTCAGGGGTTCC 60.680 60.000 0.00 0.00 0.00 3.62
597 603 0.037734 ACAATTCGGGTCAGGGGTTC 59.962 55.000 0.00 0.00 0.00 3.62
598 604 1.364269 TACAATTCGGGTCAGGGGTT 58.636 50.000 0.00 0.00 0.00 4.11
599 605 1.364269 TTACAATTCGGGTCAGGGGT 58.636 50.000 0.00 0.00 0.00 4.95
600 606 2.729028 ATTACAATTCGGGTCAGGGG 57.271 50.000 0.00 0.00 0.00 4.79
606 612 7.875327 AGCATAAAACTATTACAATTCGGGT 57.125 32.000 0.00 0.00 0.00 5.28
629 635 5.405571 ACACAGCAGTTCGTGAAGTAAATAG 59.594 40.000 0.00 0.00 36.91 1.73
653 659 1.138069 TCCAACTTCTCGAGTGCAACA 59.862 47.619 13.13 0.00 41.43 3.33
662 668 9.529325 TGTATATCAATTAACTCCAACTTCTCG 57.471 33.333 0.00 0.00 0.00 4.04
687 694 2.094700 TCTCGGAGTTGATTCTCGGTTG 60.095 50.000 4.69 0.00 36.57 3.77
689 696 1.835494 TCTCGGAGTTGATTCTCGGT 58.165 50.000 4.69 0.00 36.57 4.69
690 697 2.941453 TTCTCGGAGTTGATTCTCGG 57.059 50.000 4.69 0.00 35.52 4.63
691 698 4.424626 TGAATTCTCGGAGTTGATTCTCG 58.575 43.478 20.69 0.00 35.52 4.04
692 699 6.292061 CGAATGAATTCTCGGAGTTGATTCTC 60.292 42.308 20.69 14.57 32.87 2.87
932 942 1.401905 GGATCGAAGTGAACAATGGCC 59.598 52.381 0.00 0.00 0.00 5.36
983 993 0.780002 CATTGCTGTTTGCTCAACGC 59.220 50.000 8.24 8.24 43.37 4.84
1046 1056 1.068921 GATGCGAGGAGAAGGAGCC 59.931 63.158 0.00 0.00 0.00 4.70
1053 1063 0.614697 TTGGAGTGGATGCGAGGAGA 60.615 55.000 0.00 0.00 0.00 3.71
1167 1200 4.361971 TCGGCCACCTCGTCCTCT 62.362 66.667 2.24 0.00 0.00 3.69
1374 1407 1.367665 GCACGCGTGACTGACAAAC 60.368 57.895 41.19 17.19 0.00 2.93
1493 1526 4.558860 GCCTTGATAATCGTTGTTTTCTGC 59.441 41.667 0.00 0.00 0.00 4.26
1505 1538 9.336171 AGTTGAAATCTCTAAGCCTTGATAATC 57.664 33.333 0.00 0.00 0.00 1.75
1585 1621 6.572519 GGCTTCATTTCCTTATTGTATTGCA 58.427 36.000 0.00 0.00 0.00 4.08
1678 1717 1.771565 ACTGATCCATGCCATGTTGG 58.228 50.000 3.63 0.00 41.55 3.77
1679 1718 3.021695 AGAACTGATCCATGCCATGTTG 58.978 45.455 3.63 0.00 0.00 3.33
1680 1719 3.377253 AGAACTGATCCATGCCATGTT 57.623 42.857 3.63 0.00 0.00 2.71
1681 1720 3.377253 AAGAACTGATCCATGCCATGT 57.623 42.857 3.63 0.00 0.00 3.21
1682 1721 4.430007 CAAAAGAACTGATCCATGCCATG 58.570 43.478 0.00 0.00 0.00 3.66
1683 1722 3.449737 CCAAAAGAACTGATCCATGCCAT 59.550 43.478 0.00 0.00 0.00 4.40
1684 1723 2.827322 CCAAAAGAACTGATCCATGCCA 59.173 45.455 0.00 0.00 0.00 4.92
1685 1724 2.417787 GCCAAAAGAACTGATCCATGCC 60.418 50.000 0.00 0.00 0.00 4.40
1686 1725 2.231964 TGCCAAAAGAACTGATCCATGC 59.768 45.455 0.00 0.00 0.00 4.06
1687 1726 3.675228 GCTGCCAAAAGAACTGATCCATG 60.675 47.826 0.00 0.00 0.00 3.66
1688 1727 2.494870 GCTGCCAAAAGAACTGATCCAT 59.505 45.455 0.00 0.00 0.00 3.41
1689 1728 1.888512 GCTGCCAAAAGAACTGATCCA 59.111 47.619 0.00 0.00 0.00 3.41
1690 1729 2.165998 AGCTGCCAAAAGAACTGATCC 58.834 47.619 0.00 0.00 0.00 3.36
1691 1730 3.930634 AAGCTGCCAAAAGAACTGATC 57.069 42.857 0.00 0.00 0.00 2.92
1692 1731 5.789643 TTTAAGCTGCCAAAAGAACTGAT 57.210 34.783 0.00 0.00 0.00 2.90
1693 1732 5.590530 TTTTAAGCTGCCAAAAGAACTGA 57.409 34.783 0.00 0.00 0.00 3.41
1713 1752 3.272020 TGGGGAGGAGATGGCTTATTTTT 59.728 43.478 0.00 0.00 0.00 1.94
1714 1753 2.858768 TGGGGAGGAGATGGCTTATTTT 59.141 45.455 0.00 0.00 0.00 1.82
1715 1754 2.444766 CTGGGGAGGAGATGGCTTATTT 59.555 50.000 0.00 0.00 0.00 1.40
1716 1755 2.061061 CTGGGGAGGAGATGGCTTATT 58.939 52.381 0.00 0.00 0.00 1.40
1717 1756 1.739750 CTGGGGAGGAGATGGCTTAT 58.260 55.000 0.00 0.00 0.00 1.73
1718 1757 1.056700 GCTGGGGAGGAGATGGCTTA 61.057 60.000 0.00 0.00 0.00 3.09
1719 1758 2.381941 GCTGGGGAGGAGATGGCTT 61.382 63.158 0.00 0.00 0.00 4.35
1720 1759 2.771762 GCTGGGGAGGAGATGGCT 60.772 66.667 0.00 0.00 0.00 4.75
1721 1760 1.931007 AAAGCTGGGGAGGAGATGGC 61.931 60.000 0.00 0.00 0.00 4.40
1722 1761 0.627986 AAAAGCTGGGGAGGAGATGG 59.372 55.000 0.00 0.00 0.00 3.51
1723 1762 1.563410 AGAAAAGCTGGGGAGGAGATG 59.437 52.381 0.00 0.00 0.00 2.90
1724 1763 1.843206 GAGAAAAGCTGGGGAGGAGAT 59.157 52.381 0.00 0.00 0.00 2.75
1725 1764 1.280457 GAGAAAAGCTGGGGAGGAGA 58.720 55.000 0.00 0.00 0.00 3.71
1726 1765 0.987294 TGAGAAAAGCTGGGGAGGAG 59.013 55.000 0.00 0.00 0.00 3.69
1727 1766 1.673767 ATGAGAAAAGCTGGGGAGGA 58.326 50.000 0.00 0.00 0.00 3.71
1728 1767 3.549794 CTTATGAGAAAAGCTGGGGAGG 58.450 50.000 0.00 0.00 0.00 4.30
1729 1768 2.948315 GCTTATGAGAAAAGCTGGGGAG 59.052 50.000 0.00 0.00 44.75 4.30
1730 1769 3.004752 GCTTATGAGAAAAGCTGGGGA 57.995 47.619 0.00 0.00 44.75 4.81
1737 1776 6.169094 TGAGGAAGACAGCTTATGAGAAAAG 58.831 40.000 0.00 0.00 33.61 2.27
1738 1777 6.114187 TGAGGAAGACAGCTTATGAGAAAA 57.886 37.500 0.00 0.00 33.61 2.29
1739 1778 5.745312 TGAGGAAGACAGCTTATGAGAAA 57.255 39.130 0.00 0.00 33.61 2.52
1740 1779 5.946942 ATGAGGAAGACAGCTTATGAGAA 57.053 39.130 0.00 0.00 33.61 2.87
1741 1780 5.423290 TGAATGAGGAAGACAGCTTATGAGA 59.577 40.000 0.00 0.00 33.61 3.27
1742 1781 5.668471 TGAATGAGGAAGACAGCTTATGAG 58.332 41.667 0.00 0.00 33.61 2.90
1743 1782 5.682234 TGAATGAGGAAGACAGCTTATGA 57.318 39.130 0.00 0.00 33.61 2.15
1744 1783 6.541278 TCAATGAATGAGGAAGACAGCTTATG 59.459 38.462 0.00 0.00 31.77 1.90
1745 1784 6.656902 TCAATGAATGAGGAAGACAGCTTAT 58.343 36.000 0.00 0.00 31.77 1.73
1746 1785 6.053632 TCAATGAATGAGGAAGACAGCTTA 57.946 37.500 0.00 0.00 31.77 3.09
1747 1786 4.914983 TCAATGAATGAGGAAGACAGCTT 58.085 39.130 0.00 0.00 33.31 3.74
1748 1787 4.564782 TCAATGAATGAGGAAGACAGCT 57.435 40.909 0.00 0.00 33.04 4.24
1749 1788 4.940046 TCTTCAATGAATGAGGAAGACAGC 59.060 41.667 0.00 0.00 40.81 4.40
1753 1792 6.364568 TCAGTCTTCAATGAATGAGGAAGA 57.635 37.500 0.00 0.00 44.73 2.87
1754 1793 8.728337 TTATCAGTCTTCAATGAATGAGGAAG 57.272 34.615 0.00 0.00 44.73 3.46
1762 1801 9.605275 CCTGAGTTATTATCAGTCTTCAATGAA 57.395 33.333 0.00 0.00 42.18 2.57
1763 1802 7.712639 GCCTGAGTTATTATCAGTCTTCAATGA 59.287 37.037 2.60 0.00 42.18 2.57
1764 1803 7.714377 AGCCTGAGTTATTATCAGTCTTCAATG 59.286 37.037 2.60 0.00 42.18 2.82
1765 1804 7.800092 AGCCTGAGTTATTATCAGTCTTCAAT 58.200 34.615 2.60 0.00 42.18 2.57
1766 1805 7.124901 AGAGCCTGAGTTATTATCAGTCTTCAA 59.875 37.037 2.60 0.00 42.18 2.69
1767 1806 6.609212 AGAGCCTGAGTTATTATCAGTCTTCA 59.391 38.462 2.60 0.00 42.18 3.02
1768 1807 6.922957 CAGAGCCTGAGTTATTATCAGTCTTC 59.077 42.308 2.60 0.00 42.18 2.87
1769 1808 6.382570 ACAGAGCCTGAGTTATTATCAGTCTT 59.617 38.462 8.91 0.00 42.18 3.01
1770 1809 5.896678 ACAGAGCCTGAGTTATTATCAGTCT 59.103 40.000 8.91 0.00 42.18 3.24
1771 1810 6.155475 ACAGAGCCTGAGTTATTATCAGTC 57.845 41.667 8.91 0.00 42.18 3.51
1772 1811 6.552445 AACAGAGCCTGAGTTATTATCAGT 57.448 37.500 8.91 0.00 42.18 3.41
1773 1812 6.238320 GCAAACAGAGCCTGAGTTATTATCAG 60.238 42.308 8.91 0.00 43.15 2.90
1774 1813 5.586243 GCAAACAGAGCCTGAGTTATTATCA 59.414 40.000 8.91 0.00 35.18 2.15
1775 1814 5.586243 TGCAAACAGAGCCTGAGTTATTATC 59.414 40.000 8.91 0.00 35.18 1.75
1776 1815 5.500234 TGCAAACAGAGCCTGAGTTATTAT 58.500 37.500 8.91 0.00 35.18 1.28
1777 1816 4.905429 TGCAAACAGAGCCTGAGTTATTA 58.095 39.130 8.91 0.00 35.18 0.98
1778 1817 3.754965 TGCAAACAGAGCCTGAGTTATT 58.245 40.909 8.91 0.00 35.18 1.40
1779 1818 3.423539 TGCAAACAGAGCCTGAGTTAT 57.576 42.857 8.91 0.00 35.18 1.89
1780 1819 2.928801 TGCAAACAGAGCCTGAGTTA 57.071 45.000 8.91 0.00 35.18 2.24
1781 1820 2.283145 ATGCAAACAGAGCCTGAGTT 57.717 45.000 8.91 1.11 35.18 3.01
1782 1821 1.884579 CAATGCAAACAGAGCCTGAGT 59.115 47.619 8.91 0.00 35.18 3.41
1783 1822 2.156917 TCAATGCAAACAGAGCCTGAG 58.843 47.619 8.91 1.09 35.18 3.35
1784 1823 2.275134 TCAATGCAAACAGAGCCTGA 57.725 45.000 8.91 0.00 35.18 3.86
1785 1824 4.913335 ATATCAATGCAAACAGAGCCTG 57.087 40.909 0.00 1.16 37.52 4.85
1786 1825 5.655532 AGAAATATCAATGCAAACAGAGCCT 59.344 36.000 0.00 0.00 0.00 4.58
1787 1826 5.747197 CAGAAATATCAATGCAAACAGAGCC 59.253 40.000 0.00 0.00 0.00 4.70
1788 1827 6.327934 ACAGAAATATCAATGCAAACAGAGC 58.672 36.000 0.00 0.00 0.00 4.09
1789 1828 7.759465 AGACAGAAATATCAATGCAAACAGAG 58.241 34.615 0.00 0.00 0.00 3.35
1790 1829 7.692460 AGACAGAAATATCAATGCAAACAGA 57.308 32.000 0.00 0.00 0.00 3.41
1791 1830 8.752766 AAAGACAGAAATATCAATGCAAACAG 57.247 30.769 0.00 0.00 0.00 3.16
1792 1831 9.545105 AAAAAGACAGAAATATCAATGCAAACA 57.455 25.926 0.00 0.00 0.00 2.83
1829 1868 9.666626 TGCGTCTTTTCTTCGAAAATATAAAAA 57.333 25.926 0.00 0.00 0.00 1.94
1830 1869 9.666626 TTGCGTCTTTTCTTCGAAAATATAAAA 57.333 25.926 0.00 1.38 0.00 1.52
1831 1870 9.834628 ATTGCGTCTTTTCTTCGAAAATATAAA 57.165 25.926 0.00 0.00 0.00 1.40
1833 1872 9.910511 GTATTGCGTCTTTTCTTCGAAAATATA 57.089 29.630 0.00 0.00 0.00 0.86
1834 1873 8.447833 TGTATTGCGTCTTTTCTTCGAAAATAT 58.552 29.630 0.00 0.00 0.00 1.28
1835 1874 7.798801 TGTATTGCGTCTTTTCTTCGAAAATA 58.201 30.769 0.00 0.00 0.00 1.40
1836 1875 6.664515 TGTATTGCGTCTTTTCTTCGAAAAT 58.335 32.000 0.00 0.00 0.00 1.82
1837 1876 6.050454 TGTATTGCGTCTTTTCTTCGAAAA 57.950 33.333 0.00 2.27 0.00 2.29
1838 1877 5.660629 TGTATTGCGTCTTTTCTTCGAAA 57.339 34.783 0.00 0.00 0.00 3.46
1839 1878 5.660629 TTGTATTGCGTCTTTTCTTCGAA 57.339 34.783 0.00 0.00 0.00 3.71
1840 1879 5.856126 ATTGTATTGCGTCTTTTCTTCGA 57.144 34.783 0.00 0.00 0.00 3.71
1841 1880 6.682863 CCTTATTGTATTGCGTCTTTTCTTCG 59.317 38.462 0.00 0.00 0.00 3.79
1842 1881 7.748847 TCCTTATTGTATTGCGTCTTTTCTTC 58.251 34.615 0.00 0.00 0.00 2.87
1843 1882 7.681939 TCCTTATTGTATTGCGTCTTTTCTT 57.318 32.000 0.00 0.00 0.00 2.52
1844 1883 7.865706 ATCCTTATTGTATTGCGTCTTTTCT 57.134 32.000 0.00 0.00 0.00 2.52
1845 1884 9.599322 CATATCCTTATTGTATTGCGTCTTTTC 57.401 33.333 0.00 0.00 0.00 2.29
1846 1885 9.337396 TCATATCCTTATTGTATTGCGTCTTTT 57.663 29.630 0.00 0.00 0.00 2.27
1847 1886 8.902540 TCATATCCTTATTGTATTGCGTCTTT 57.097 30.769 0.00 0.00 0.00 2.52
1848 1887 8.902540 TTCATATCCTTATTGTATTGCGTCTT 57.097 30.769 0.00 0.00 0.00 3.01
1849 1888 7.118390 GCTTCATATCCTTATTGTATTGCGTCT 59.882 37.037 0.00 0.00 0.00 4.18
1850 1889 7.237173 GCTTCATATCCTTATTGTATTGCGTC 58.763 38.462 0.00 0.00 0.00 5.19
1851 1890 6.149474 GGCTTCATATCCTTATTGTATTGCGT 59.851 38.462 0.00 0.00 0.00 5.24
1852 1891 6.546395 GGCTTCATATCCTTATTGTATTGCG 58.454 40.000 0.00 0.00 0.00 4.85
1853 1892 6.403636 CCGGCTTCATATCCTTATTGTATTGC 60.404 42.308 0.00 0.00 0.00 3.56
1854 1893 6.403636 GCCGGCTTCATATCCTTATTGTATTG 60.404 42.308 22.15 0.00 0.00 1.90
1855 1894 5.648092 GCCGGCTTCATATCCTTATTGTATT 59.352 40.000 22.15 0.00 0.00 1.89
1856 1895 5.186198 GCCGGCTTCATATCCTTATTGTAT 58.814 41.667 22.15 0.00 0.00 2.29
1857 1896 4.564821 GGCCGGCTTCATATCCTTATTGTA 60.565 45.833 28.56 0.00 0.00 2.41
1858 1897 3.412386 GCCGGCTTCATATCCTTATTGT 58.588 45.455 22.15 0.00 0.00 2.71
1859 1898 2.749621 GGCCGGCTTCATATCCTTATTG 59.250 50.000 28.56 0.00 0.00 1.90
1860 1899 2.375174 TGGCCGGCTTCATATCCTTATT 59.625 45.455 28.56 0.00 0.00 1.40
1861 1900 1.985159 TGGCCGGCTTCATATCCTTAT 59.015 47.619 28.56 0.00 0.00 1.73
1862 1901 1.429930 TGGCCGGCTTCATATCCTTA 58.570 50.000 28.56 0.00 0.00 2.69
1863 1902 0.773644 ATGGCCGGCTTCATATCCTT 59.226 50.000 28.56 1.69 0.00 3.36
1864 1903 0.037303 CATGGCCGGCTTCATATCCT 59.963 55.000 28.56 0.00 0.00 3.24
1865 1904 0.250901 ACATGGCCGGCTTCATATCC 60.251 55.000 28.56 7.32 0.00 2.59
1866 1905 1.160137 GACATGGCCGGCTTCATATC 58.840 55.000 28.56 17.02 0.00 1.63
1867 1906 0.250901 GGACATGGCCGGCTTCATAT 60.251 55.000 28.56 11.76 0.00 1.78
1868 1907 1.148273 GGACATGGCCGGCTTCATA 59.852 57.895 28.56 8.37 0.00 2.15
1869 1908 2.124151 GGACATGGCCGGCTTCAT 60.124 61.111 28.56 19.47 0.00 2.57
1870 1909 4.424711 GGGACATGGCCGGCTTCA 62.425 66.667 28.56 17.84 0.00 3.02
1871 1910 4.115199 AGGGACATGGCCGGCTTC 62.115 66.667 28.56 16.93 0.00 3.86
1872 1911 4.115199 GAGGGACATGGCCGGCTT 62.115 66.667 28.56 11.93 0.00 4.35
1877 1916 4.176752 GGACGGAGGGACATGGCC 62.177 72.222 10.00 10.00 0.00 5.36
1878 1917 4.176752 GGGACGGAGGGACATGGC 62.177 72.222 0.00 0.00 0.00 4.40
1879 1918 1.847798 TTTGGGACGGAGGGACATGG 61.848 60.000 0.00 0.00 0.00 3.66
1880 1919 0.037590 TTTTGGGACGGAGGGACATG 59.962 55.000 0.00 0.00 0.00 3.21
1881 1920 0.999712 ATTTTGGGACGGAGGGACAT 59.000 50.000 0.00 0.00 0.00 3.06
1882 1921 1.659022 TATTTTGGGACGGAGGGACA 58.341 50.000 0.00 0.00 0.00 4.02
1883 1922 2.026542 ACTTATTTTGGGACGGAGGGAC 60.027 50.000 0.00 0.00 0.00 4.46
1884 1923 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
1885 1924 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
1886 1925 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
1887 1926 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
1888 1927 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
1889 1928 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
1890 1929 4.378459 GCTCAAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
1891 1930 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
1892 1931 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
1893 1932 5.712152 AAGCTCAAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
1894 1933 7.440523 ACTAAGCTCAAGACACTTATTTTGG 57.559 36.000 3.19 0.00 0.00 3.28
1895 1934 8.988934 TGTACTAAGCTCAAGACACTTATTTTG 58.011 33.333 3.19 0.00 0.00 2.44
1896 1935 9.555727 TTGTACTAAGCTCAAGACACTTATTTT 57.444 29.630 3.19 0.00 0.00 1.82
1897 1936 9.555727 TTTGTACTAAGCTCAAGACACTTATTT 57.444 29.630 3.19 0.00 0.00 1.40
1898 1937 9.726438 ATTTGTACTAAGCTCAAGACACTTATT 57.274 29.630 3.19 0.00 0.00 1.40
1899 1938 9.726438 AATTTGTACTAAGCTCAAGACACTTAT 57.274 29.630 3.19 0.00 0.00 1.73
1900 1939 9.555727 AAATTTGTACTAAGCTCAAGACACTTA 57.444 29.630 3.19 0.00 0.00 2.24
1901 1940 8.345565 CAAATTTGTACTAAGCTCAAGACACTT 58.654 33.333 10.15 0.00 0.00 3.16
1902 1941 7.499232 ACAAATTTGTACTAAGCTCAAGACACT 59.501 33.333 22.10 0.00 40.16 3.55
1903 1942 7.639945 ACAAATTTGTACTAAGCTCAAGACAC 58.360 34.615 22.10 2.09 40.16 3.67
1904 1943 7.801716 ACAAATTTGTACTAAGCTCAAGACA 57.198 32.000 22.10 0.00 40.16 3.41
1928 1967 9.730705 TGTCTTAACTTTGTACTAGCTCTAGTA 57.269 33.333 11.59 11.59 43.98 1.82
1930 1969 8.732531 AGTGTCTTAACTTTGTACTAGCTCTAG 58.267 37.037 0.00 2.55 39.04 2.43
1931 1970 8.632906 AGTGTCTTAACTTTGTACTAGCTCTA 57.367 34.615 0.00 0.00 0.00 2.43
1932 1971 7.527568 AGTGTCTTAACTTTGTACTAGCTCT 57.472 36.000 0.00 0.00 0.00 4.09
1933 1972 9.857957 ATAAGTGTCTTAACTTTGTACTAGCTC 57.142 33.333 0.00 0.00 40.77 4.09
1934 1973 9.640963 CATAAGTGTCTTAACTTTGTACTAGCT 57.359 33.333 0.00 0.00 40.77 3.32
1935 1974 9.635520 TCATAAGTGTCTTAACTTTGTACTAGC 57.364 33.333 0.00 0.00 40.77 3.42
1941 1980 9.778741 TCTCAATCATAAGTGTCTTAACTTTGT 57.221 29.630 0.00 0.00 40.77 2.83
1943 1982 8.926710 CGTCTCAATCATAAGTGTCTTAACTTT 58.073 33.333 0.00 0.00 40.77 2.66
1944 1983 7.545965 CCGTCTCAATCATAAGTGTCTTAACTT 59.454 37.037 0.00 0.00 42.89 2.66
1945 1984 7.036220 CCGTCTCAATCATAAGTGTCTTAACT 58.964 38.462 0.00 0.00 0.00 2.24
1946 1985 7.033791 TCCGTCTCAATCATAAGTGTCTTAAC 58.966 38.462 0.00 0.00 0.00 2.01
1947 1986 7.122204 TCTCCGTCTCAATCATAAGTGTCTTAA 59.878 37.037 0.00 0.00 0.00 1.85
1948 1987 6.602009 TCTCCGTCTCAATCATAAGTGTCTTA 59.398 38.462 0.00 0.00 0.00 2.10
1949 1988 5.419155 TCTCCGTCTCAATCATAAGTGTCTT 59.581 40.000 0.00 0.00 0.00 3.01
1950 1989 4.950475 TCTCCGTCTCAATCATAAGTGTCT 59.050 41.667 0.00 0.00 0.00 3.41
1951 1990 5.066634 TCTCTCCGTCTCAATCATAAGTGTC 59.933 44.000 0.00 0.00 0.00 3.67
1952 1991 4.950475 TCTCTCCGTCTCAATCATAAGTGT 59.050 41.667 0.00 0.00 0.00 3.55
1953 1992 5.067153 ACTCTCTCCGTCTCAATCATAAGTG 59.933 44.000 0.00 0.00 0.00 3.16
1954 1993 5.197451 ACTCTCTCCGTCTCAATCATAAGT 58.803 41.667 0.00 0.00 0.00 2.24
1955 1994 5.766150 ACTCTCTCCGTCTCAATCATAAG 57.234 43.478 0.00 0.00 0.00 1.73
1956 1995 6.358178 ACTACTCTCTCCGTCTCAATCATAA 58.642 40.000 0.00 0.00 0.00 1.90
1957 1996 5.931294 ACTACTCTCTCCGTCTCAATCATA 58.069 41.667 0.00 0.00 0.00 2.15
1958 1997 4.787551 ACTACTCTCTCCGTCTCAATCAT 58.212 43.478 0.00 0.00 0.00 2.45
1959 1998 4.223556 ACTACTCTCTCCGTCTCAATCA 57.776 45.455 0.00 0.00 0.00 2.57
1960 1999 9.090692 GTATATACTACTCTCTCCGTCTCAATC 57.909 40.741 5.58 0.00 0.00 2.67
1961 2000 7.760794 CGTATATACTACTCTCTCCGTCTCAAT 59.239 40.741 11.05 0.00 0.00 2.57
1962 2001 7.040132 TCGTATATACTACTCTCTCCGTCTCAA 60.040 40.741 11.05 0.00 0.00 3.02
1963 2002 6.432472 TCGTATATACTACTCTCTCCGTCTCA 59.568 42.308 11.05 0.00 0.00 3.27
1964 2003 6.851609 TCGTATATACTACTCTCTCCGTCTC 58.148 44.000 11.05 0.00 0.00 3.36
1965 2004 6.832520 TCGTATATACTACTCTCTCCGTCT 57.167 41.667 11.05 0.00 0.00 4.18
1966 2005 7.758980 TCAATCGTATATACTACTCTCTCCGTC 59.241 40.741 11.05 0.00 0.00 4.79
1967 2006 7.609960 TCAATCGTATATACTACTCTCTCCGT 58.390 38.462 11.05 0.00 0.00 4.69
1968 2007 7.975058 TCTCAATCGTATATACTACTCTCTCCG 59.025 40.741 11.05 0.00 0.00 4.63
1969 2008 9.826574 ATCTCAATCGTATATACTACTCTCTCC 57.173 37.037 11.05 0.00 0.00 3.71
1975 2014 9.727859 ACAGACATCTCAATCGTATATACTACT 57.272 33.333 11.05 0.00 0.00 2.57
1985 2024 9.046296 GGAATAAAATACAGACATCTCAATCGT 57.954 33.333 0.00 0.00 0.00 3.73
1986 2025 9.265901 AGGAATAAAATACAGACATCTCAATCG 57.734 33.333 0.00 0.00 0.00 3.34
1990 2029 9.958180 TCAAAGGAATAAAATACAGACATCTCA 57.042 29.630 0.00 0.00 0.00 3.27
1994 2033 8.897752 GCTCTCAAAGGAATAAAATACAGACAT 58.102 33.333 0.00 0.00 0.00 3.06
1995 2034 7.336931 GGCTCTCAAAGGAATAAAATACAGACA 59.663 37.037 0.00 0.00 0.00 3.41
1996 2035 7.336931 TGGCTCTCAAAGGAATAAAATACAGAC 59.663 37.037 0.00 0.00 0.00 3.51
1997 2036 7.402054 TGGCTCTCAAAGGAATAAAATACAGA 58.598 34.615 0.00 0.00 0.00 3.41
1998 2037 7.630242 TGGCTCTCAAAGGAATAAAATACAG 57.370 36.000 0.00 0.00 0.00 2.74
1999 2038 7.450014 TGTTGGCTCTCAAAGGAATAAAATACA 59.550 33.333 0.00 0.00 37.08 2.29
2000 2039 7.826690 TGTTGGCTCTCAAAGGAATAAAATAC 58.173 34.615 0.00 0.00 37.08 1.89
2001 2040 8.593945 ATGTTGGCTCTCAAAGGAATAAAATA 57.406 30.769 0.00 0.00 37.08 1.40
2002 2041 6.916360 TGTTGGCTCTCAAAGGAATAAAAT 57.084 33.333 0.00 0.00 37.08 1.82
2003 2042 6.916360 ATGTTGGCTCTCAAAGGAATAAAA 57.084 33.333 0.00 0.00 37.08 1.52
2004 2043 7.450014 TGTTATGTTGGCTCTCAAAGGAATAAA 59.550 33.333 0.00 0.00 37.08 1.40
2005 2044 6.945435 TGTTATGTTGGCTCTCAAAGGAATAA 59.055 34.615 0.00 0.00 37.08 1.40
2006 2045 6.480763 TGTTATGTTGGCTCTCAAAGGAATA 58.519 36.000 0.00 0.00 37.08 1.75
2007 2046 5.324409 TGTTATGTTGGCTCTCAAAGGAAT 58.676 37.500 0.00 0.00 37.08 3.01
2008 2047 4.724399 TGTTATGTTGGCTCTCAAAGGAA 58.276 39.130 0.00 0.00 37.08 3.36
2009 2048 4.365514 TGTTATGTTGGCTCTCAAAGGA 57.634 40.909 0.00 0.00 37.08 3.36
2010 2049 4.701651 TCATGTTATGTTGGCTCTCAAAGG 59.298 41.667 0.00 0.00 37.08 3.11
2011 2050 5.885230 TCATGTTATGTTGGCTCTCAAAG 57.115 39.130 0.00 0.00 37.08 2.77
2012 2051 6.839124 AATCATGTTATGTTGGCTCTCAAA 57.161 33.333 0.00 0.00 37.08 2.69
2027 2066 6.435164 ACAAAGAGGCCCTATAAATCATGTT 58.565 36.000 0.00 0.00 0.00 2.71
2085 2124 4.261741 GGCATGTCATTCCAACCATACATC 60.262 45.833 0.00 0.00 0.00 3.06
2093 2132 3.055963 TCCAATTGGCATGTCATTCCAAC 60.056 43.478 20.33 0.00 42.02 3.77
2178 2226 5.716228 TGGGAATTGTAGCATTCACTTCAAT 59.284 36.000 0.00 0.00 38.74 2.57
2182 2230 5.263599 TCATGGGAATTGTAGCATTCACTT 58.736 37.500 0.00 0.00 31.78 3.16
2194 2242 7.959689 TTTGTACAACATTTCATGGGAATTG 57.040 32.000 8.07 0.00 39.26 2.32
2251 2299 1.811965 TGGTCGTTCGATTCGTAGGAA 59.188 47.619 9.19 0.00 36.41 3.36
2354 2402 2.878429 CTCTGTCGCCGTAGCAGT 59.122 61.111 6.15 0.00 39.83 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.