>input_sequence_80440
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-------------------------------------------------ATGGCTCCCAAGACCGCGGTCGTCGCCTTCA
CGCTCATCGCAGCCCGGCTCCTT-----------------CTCCTCGCATCCACTCCAACGACCGCGATATCGATCCCTC
CGGCTACCACGA------CCGGTACTACCACCGTGCCTTCAGGAACCGCGACGGACGTCCCGGAGCGCCCGTTCCCGGGA
GAGGACGAGGTGGCCGAGGTCGCGGCTGAATGCTGGAACGCGGTGCTGCAGGCGGAGCGCTGCGCGGTCGACGTCCTCAA
GTGGCTCGCGTCCGGGCAGCTCGCCGGCCGCGTGAGCCCGGCGTGCTGCGGCGTGCTCCAGAGGTTCGGGGACAGGTGCC
TCCGCGACCTCTTCCCCCACTCTGCGGTCGGCCGACTCTACGCTCCGTTTGTCAGTCACGCGTGCGGTTTCCCCAAATGG
GCAACGACCCCCAGCGGCCGCCAGTGA-----------------------------------------------------
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--
>chr5B_1_TraesCS5B01G431900
CACAACCCTGGCCGCTCCTCCGGTCCACCTCCTTCTCAGCCTACCTTTCTACGCCCGCCACTAGGCCA-GTGGCTGCCTC
GTGCTGCGCTCG-CCACGTGCGGAAGGACCAGCCAACGCGACTCCCATTGGCGCGAGGCAGCGACCCCATGTGGCAACAA
CTGGCGGGCACTGACTCCAGGCGGAGCCCCTTGGCAGCGCGTTGGCGGCGACCCCAGGCGGGGCACCATGTTGGTGCGGC
GGCGGCGACTCCATGGTCGGAAGATTTAATGCCAGATAACTTTTTTAAAATGTCCGAGGACCTGGTTGCTTTTTAAAAAT
GATTGCAATGATCCGACTTCTTTTTAAAAATGTTTGTAGGGACCCGATTGAGTTTTTTTAATTTTG-TAGGGTTTATTCC
GTAAAAG--TCTGTGGAAGAGACACTGACATGTGGCCCCACATGCCAGTTAATGCTCAAACAATCAGTTCTCTTACGTGC
GGCCCCCAACTGTTATAATCACGATCAATTGTAAAGCACTATGTTATTTGGGTTTTTCGAAGCAGCCGACCTCGATACAT
GTAGTTATCACCAACAAACAAATTTTTAGTACTAATTTTTTGGAACCCCTGACCCGAATTGTAATAGTTTTATGCTATTT
ACTTCACGAACTGCTGTGTGTTGCACTC-GAGAAGTTGGAGTTAATTGATATACAACCG--AGAATCAACTCCGAGAATT
CATTCGTTTCTTTGTGAGGAATTAACACCAAGAGATTAACTCGATACGGTACTGCTAACATAACCCGTTTTGATCAAATT
AAC-CCATCTGAGAGAAACTCCAACGCAATTAAGCTCTTGTCGACTGTTAGCCCCTGCGCTCCACATATGGCCATCCTTC
CACCGTACCCGGCCCCTATATAACACTTGAGCATTTCCCTCGATTCCGACATCTCTCCACAGGCCATTGTTCACTTCGAT
CCATAGAGCAACAGAAGCAGAAAGTGTAGCTGGCGTTGAGCAAACAGCAATGGCTCCCAAGACCGCGGTCGTCGCCTTCA
CGCTCATCGCAGCCCGGCTCCTT-----------------CTCCTCGCATCCACTCCAACGACCGCGATATCGATCCCTC
CGGCTACCACGA------CCGGTACTACCACCGTGCCTTCAGGAACCGCGACGGACGTCCCGGAGCGCCCGTTCCCGGGA
GAGGACGAGGTGGCCGAGGTCGCGGCTGAATGCTGGAACGCGGTGCTGCAGGCGGAGCGCTGCGCGGTCGACGTCCTCAA
GTGGCTCGCGTCCGGGCAGCTCGCCGGCCGCGTGAGCCCGGCGTGCTGCGGCGTGCTCCAGAGGTTCGGGGACAGGTGCC
TCCGCGACCTCTTCCCCCACTCTGCGGTCGGCCGACTCTACGCTCCGTTTGTCAGTCACGCGTGCGGTTTCCCCAAATGG
GCAACGACCCCCAGCGGCCGCCAGTGATAGCCGGTCGTGTTCTGCCATGTGGCATCTGAAGACTGAGAATAATTCAGGCT
CCATTGCAGAAAACAACGATTATCAAGGCTTAGAGATTTCAACTTCTTTTCCTTTTTC--TAAATAA-TTCTTTCTTTCA
TTTTTGAAGAAATTAAAAGATGCAATACAATAAGGAAATGAA-GCCGGCCATGCGGTATGTATGATC--ATACAAGAGCC
CTTGGTTGAAATTTCTGTACTTTGTTCCCTTGAGAGCCAACATGGCATGGATCAGTTCTTTTGGCAGCTTAAAAAATAAG
CCATCTCCTCCCCAGCTTTTCTCATAAGCTGTCTTCCTCATTCATTGAAGACTGATAATAACTCAGGCTCTGTTTGCATT
GATATTTCTGTCTTTTTAAATCAATACTTTTTATATTTTCGAAGAAAAGACGCAATACAATAAGGATATGAAGCCGGCCA
TGTCCCTCCGTCCCAAAATAAGTGTCTTGAGCTTAGTACAAATTTGTACTAGAGCTAGTACAAAGTTAAGACACTTATGA
TTGAGACGGAGAGAGTAGTATATACGATTGAGATGTCTGTATTTTATTCCTTTGAGAGCCAACATAACATGATTTATAGG
GCCTCTTTGTTTTGCAAGATTGCAAAAATGCATAAATAGGAAAGATGTATGGTTGGAATGACATGCCAATTGGATTATTA
TGAATTTGAGTTTGTTTG---------ATTGTATCACAGGAAGAACTACGGATTTCTTCCAAGAGATTGAAGTGAATGCT
ACAATTCCCATGAAATGTTGTACAAATGTATCCTTAGGAGAAATTCCTATAGGATTCATTCCTACGAATCGAACGACCAA
TGTAGAAAAGATTCTCAAGGATTCTAATCCTTGAGAACTCTTATGGAAATCCTTTCCCTTAGTTTTAATCTATTATACCA
CACTGCTACGGCGACAGAGCCAGCTCATGGACAGAGCGAGCAGGGTGGCGGTCCAGGGCAAATAGATTATAATGACTAAA
AC
>chr5A_3
--CAACCCTGGCCGCTCCTTCGGCCCACCTCCTTCTTAGCCTACCTTTCTACGCCCGCCGCCAGGACCTGTGGCTGCCTC
GTGCTGCGCTCGGCCACGTGCGGACAAAGCAGCCAACGCGACTCCCATTGGCACGAGGCAGTGGCCCCAAGTGGCGACCC
CTGGCGGGCGGTGATTCCAGGCGGAGCCCGATGGCAGCGTGGTGGCGGCGACCCTAGGCGGGGCGCCATGGTGGTGCGAC
GGCGGCAACTCCATTACCG--AGATTTAACGTCAGATTGCTTTTTTAAAATGTCTAAGGGGTCGGTTGCTTTCCAAACAT
GATTGCAAGGATCCAATTGCTTTTT-AAAATGTTTGTAAGGACCTGATTTATTTTTTAAAATGTCTATAGGGTTTATTCA
GTAAAAAAATCTGTGGAAGAGACACTGACATGTGGCCCCACATGTCAGTTAACCCTCAAACAATCAATTCTCTTACATGC
AGCCCCAGT-TGTTATAATCACAATCAATTGTAAAGCACTCGACTATTTGGGTTTTTTGAAACAGCTGGCCTCGATACTG
GTAGGAA---------------------------------------CCCTGGCCCGAATTGTAATAGTTTTATGTTATTT
ACTTCACGAACTGTTGTGGGTTGCACTTTGAGAAGTTGAAGTTAATTGATATATATAATCAAGAATCAACTCGGAGAATT
CTTTCGTTTCTTTGTGAGGAATTAACACCAAGAAATTAACTCGATACGGTACTGCTAACATAACCCGTTTTGATCAAATT
AACTCCATCTGAGAGAAACTCCAACGCAATTAAGCTCTTGTCGACTGTTAGCCCATGCGCTCCACATATGGGCATCCTTC
CACCGTACCCGGCCCCTATATAACACTTGAGCATTTCCCTCGATTCCGACATCACTCCACACGCTATTGTTCACTTCGAT
CCATAGAGCAACAGAAGCAGAAAGTGTAGCTGACGTTGAGCAAACAGCAATGGCCCCTAAGACCGCGGTCGTCGCCTTCA
CGCTCATCGCCGCGCAGCTCCTCCTCCT-----------CCTCCTCGCATCCACTCCAACGACCGCGATATCGATCCCTC
TGGCTACCACGA------CCGGTACTACCACCGTGCCTTCAGGATCGGCGACGGGCGTCCCGGCGCTCCCGTTCCCGGGG
GAGGACGAGGTGGCCGAGGCCGCGGCTGAATGCTGGAATGCGGTGCTGCAGGCGGAGCGCTGCGCGGTCGACGTCCTCAA
GTGGCTCGCGTCCGGGCAGCTCGCCGGCCGCGTGAGCCCGGCGTGCTGCGGCGTGCTCCAGAGGTTCGGCGACAGGTGCC
TCCGCGACCTCTTCCCCCACTCTGCGGTCGGCCGACTCTACGCTCCCTTTGTCAGTCACGCGTGCGGTATCCCCAGACGG
GCAACGACCCCCAGCGGACGCCCGTGATAGCCGGTCGTGACCTGCCATGTGGCATCTGAAAACTGAGAATAATTCAGGGT
CTG---------------------------------TTTGCACTGATATTTCTGTCCTTTTAAAGCA-ATACCTTTTACA
TTTTCGAAG-----AAAAGACGCAATACAATGAGGATATGAA-GCCGGCCATACAGTATATA------------------
--TGATTGAGATATCTGTATTTTATTCCT---------------------------------------------------
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---------------------------------------------------TTGAGAGCCAACATGACATGATTTATAGG
GCCTCTTTGTTTGGCAGGATTGCAAAAATGCATAAATAGGAAACATGTATGCTTGGAATGACCTGCCAATTGGATTATTA
TGAATTTCAGTTTGTTTG---------ATTGTATCACAGGAAGAACTAAGGATTTCTTCCAAGAGGCTGGAGTGAATACA
AGAATTCCCATGAAATGTTGTAAAA-TGAATCCATAGGAGAAATTTCAATAGGATTCAATCCTACGAATCGAACGACCAA
CGTAGGAAAGATTCTCAAGGATTCTAATCCTTGAGAACTCTTATGAAAATCCTTACCCTTAGTTTTAATCTATTATACCA
CGCTGCTACCGCGACAGAACCAGCTCATGGACAGAGCGAGCAGGGTGGCACTCCAGGGCAAATAGATTATAATTAGTAAA
A-
>chr5B_700
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-------------------------------------------------------------------AACTCCGAGAATT
CATTCGTTTCTTTATGAGGAATTAACACCAAGAGATTAACTCGATACGGTACTGCTAACATAACCCA-TTTGATGAAATT
AACTCCATCCGAGAGAAACTCCAACGCAATTTAGCTCTTGTCGACTGTTAGCCCATGCGATTCACATATGGCCATCCTTC
CACCGTACCCAGCCCCTATATAACACTTGAGCATTTCCCTCGATTCCGACATCTCTCCACACGCCATTGTTCACTTCGAT
CCATAGAACAACAGAACCAGAAAGTGTAGCTGACGCTGAGCAAACAGCAATGGCTTCCTAGACCTCGGTCGTCGCCTTCA
CGCTCATGGCAGCCCAGC---------TCCTCGCCTCCTCCTCCTCGCATGCACTCCAACCACGGCGATATCGATCCCTC
CGGCTACCACGATCGTTGCCGGTACTACCACCGTGCCTTCAGGATCGGCGACGGACGTCCCGGCGCTCCCGTTCCCGGGG
GAGGACGAGGTGGCCGAGGCCGCGGCTGAATGCTGGAACGCGGTGCTGCAGGCGGAGCGCTGCGCGGTCGACGTCCTCAA
GTGGCTCGCGTCCCGGCAGCTCGCCGGCCGCGTGAGCCCGGCGTGCTGCGGTGTGCTCCAGAGGGTCGGCGACAGGTGCC
TCCGCGACCTCTTCCCCCACTCTGCGGTCGGCCGACTCTACGCTCCCTTTGTCAGTCACGCGTGCGGTTTCCCCAAACGG
GCAACGCCCCCCAGCGGCCGCCAGTGATAGCCGGTCGTGTTCTGCCATGTGGCATCTGAAGACTGAGAATAATTCAGGCT
CCATT-CAGAAAACAACAATTATCAAGGCTTAGAGATTTCAACTTCTTTTCCTTTTTC--TAAATTA-TTCTTTCTTTCA
TTCTTGAAGAAACTAAAAGACGCAATATAATAAGGAAATGAA-GCCGGCCATGCAGTATGTATGATCGAATACAAGAGCC
CTTGGTTGAAATTTCTGTACTTTGTTCCC---------------------------------------------------
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---------------------------------------------------TTGAGAGCCAACATGACATGGGCCAGTTC
TTTTGG--------------------------------------------------------------------------
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--
>chr5A_700
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-------------------------------------------------------------------AACTCCGAGAATT
CTTTCGTTTCTTTGTGAGGAATTAACACCAAGAGATTAACTCGATACGGTACTGCTAGCATAACCCGTTTTGATCAAATT
AACTCCATCTGAGAAAAACTCCAACGCAATTAAGCTCTTGTCGACTGTTAGCCCATGCGATTCACGTATGGCCATCCTTC
CACCGTACCCGGCCCCTATATAACACTTGAGCATTTCCCTCGATTCCGACATCTCTCCACACGCCATTGTTCACTTTGAT
CCATAGAGCAACATAAGCAGAAAGTGTAGCTGACGTTGAGCAAACAGCAATGGCCTCCAAGACCGCGGTCGTCGCCTTCA
CGCTCATCGCAGCCCAGC---------TCCA--------CCTCCTCGCATGCACTCCAACCACGGCGATATCGATCCCTC
CGGCCACCACGA------CCGGTACTACCACCGTGCCTTCAGGACCCGCGACGGACGTCCCGGCGCTCCCGTTCCCCGGG
GAGGGCGAGGTGGCCAAGACCACGGCTGACTGCTGGAAGGTAGTGCTGCAGGCGGAGAGCTGCGCGGTCGACGTCCTCAA
GTGGCTCGCGTCGCGGCAGCTCGCCGGTCGCGTGAGCCCGGCGTGCTGCGGTGTGCTCCAGAGGTTCGGCGACAGGTGCC
TCCGCGACCTCTTCCCCCGCTCTGCGGTCGCCCGACTCTACGCTCCCTTTGTCAGTCACGCGTGCGGTATCCCCAAACGG
GCAACGGCCCCCAGCGGCCGCCAGTGATAGCCGGTCGTGTTCTGCCATGTGGCATCTGAAGACTGAGAATAATTCAGGCT
CCATTTCAGAAAACAACAATTATTAAGGCTGAGAGATTTCAACTTCTTTTCCTTTTTTCTAAATATAGTTCTTTCTTTCA
TTTTTGAAGAAATTAAAAGACGCAATACAATAAGGAAATGAA-GCCGGCCATGCGGTATGTATGATCGAATACAAGAGCC
CTTGATTGAAATTTTTGTATTT----------------------------------------------------------
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--
>chr5D_700
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-------------------------------------------------------------------AACTCCGAGAATT
CATTCGTTTCTTTGTGAGGAATTAACACCAAGAGATTAACTCGATACGGTACTGCTAACATAACCCATTTTGACGAAATT
AACTCCATCCGCGTGAAACTCCAACGCAATTAAGCTCTTGTCGACTGTTAGCCCATGCGCTCCACATATGGCCATCCTTC
CACCGTACCCGGCCCCTATATAACACTTGAGCATTTCCCTCGATTCCGACATCTCTCCACACGCCATTGTTTACTTCGAC
CCATAGAGCAACGGAAACAGAAAGTGTAGCTGACGTTGAGCAAACAGCAATGGCCTCCAAGACCGCGGTCGTCGCCTTCA
CACTCATCGCAGCCCAGC---------T-----------CCTCCTCGCATCCACTCCAACGACCGCGATATCGATCCCTC
CGGCTACCACGA------CCGGTACTACCACCGTGCCTTCAGGATCCGCGACGGACGTCCCGGCGCTCCCGTTCCCGGGG
GAGGGCGAGGTGGCCGAGGCCGCGGCTGACTGCTGGAAGGTAGTGCTGCAGGCGGAGAGCTGCGCGGTCGACATCCTCAA
GTGGCTCGCGTCCCGGCAGCTCGCCGGCCGCGTGAGCCTGGCGTGCTGCGGTGTGCTCCAGAGGGTCGGCGACAGGTGCC
TCCGCGACCTCTTCCCCCACTCTGCGGTCGGCCGACTCTACGCTCCCTTTGTGAGTCACGCGTGCGGTATCCCCAAACGG
GCAACGACCCCCAACGGCCGCCAGTGATAGCCGGTCGTGTTCTGCCATGTGGCATCTGAAGACTGAGAATAATTCAGGCT
CTG---------------------------------TTTGCACTGATATTTCTGTCTTTTTAAAGTAGTTTA----TACA
TTTTTGAAG-----AAAAGACGCAATACAATAAGGATATGAAAGCCGGCCATACAGTAG---------------------
----------ATGTCTTTATTTTATTCCT---------------------------------------------------
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---------------------------------------------------TTGAGAGCCAACATGACGTGGTTTATAGG
----CTTTGATTCGCAGGATTGCAAAAACGTGGGAATATGAAACATGTATGATTGAAATGACATGCCAATTGCATTATTA
TGGATTTGAGTTTGTTTAATGTGTTTAATTGTATCACGGGAAGAACTAAGGATTTTTTCCAAGAGGTTGGAGTGGATGCT
AAACTTCCTATGAAATATTGTACAAATGAATCTTTAAGGAAACT----------------------AATCGAACGGCCAA
TGTAGGAAAGATTCTCAAGGATTCTA-----TGAAAAATCTTATGAAAACCCTTTCCCTTAGTTTTAATCTATTATACCA
CGCTGCTGCGGCGACAGAGCCAGCTCATGGACAAAGCGAGCAGGGTGGCGGTCGAGGGGAAATAGATTATAATTAGTAAA
AC
>SNPs
SS-----------------S---S------------S----------------------S-S---S-S------------
------------------------SSS-S-----------------------S--------S-S-----S-----S--SS
---------SS---S--------------SS--------S-S------------S---------S-----S-------S-
------S-------SSS--SS--------S-S-----SS---------------SS---SSSS---------SS---S--
--------S-----S-S-S------S------------S-----S----S-S-----SS---S-SS-------------S
------S-------------------------------------S-------SS------------S---------S---
S-----SSSS------------S-----------------SSSS-------------S---S----S-S---------SS
----SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S----------------------S-----
-------------S----S--------S----------S--------------S-SSSS---------------------
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------------------------------------------------------S-------------------------
-------------------------------------------------------------S------------------
--------------------------------S-----------------------------------------------
---------------S------S---------------------------------------------------------
--------------------------------------------S------------------S--S------------S
-------------------S------------------------------------------------------------
---------------------------------------------------------------------S----------
----------------------------------------------S------------------------------S--
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-----S-----------S-----------------------------------------------S--------------
--------------------S-----------------------------------------------------------
-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S--------------
------------S---S--------------------------S-------S----------------------------
------------------------------------------------S----------------S---S----------
-S--------------------------S----------------S-S----------S---------------------
-----S---------------------------------------S----------------------------------
-S-----------------------------------------------------------------------S-S----
--
>forward_547
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-----------------------------------------------TTGGGTTTTTCGAAGCAGCC-------------
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--
>reverse_1903
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--------------------------------------------------------------AGGATATGAAGCCGGCCA
TG------------------------------------------------------------------------------
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--
