Multiple sequence alignment - TraesCS5B01G430900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G430900 chr5B 100.000 1499 0 0 967 2465 605817627 605816129 0.000000e+00 2769.0
1 TraesCS5B01G430900 chr5B 100.000 699 0 0 1 699 605818593 605817895 0.000000e+00 1291.0
2 TraesCS5B01G430900 chr5A 91.243 1062 69 12 975 2014 613533223 613532164 0.000000e+00 1424.0
3 TraesCS5B01G430900 chr5A 89.109 606 51 9 15 613 613534220 613533623 0.000000e+00 739.0
4 TraesCS5B01G430900 chr5A 92.833 293 20 1 2173 2465 613521753 613521462 8.150000e-115 424.0
5 TraesCS5B01G430900 chr5A 92.079 101 8 0 2020 2120 613532201 613532101 2.560000e-30 143.0
6 TraesCS5B01G430900 chr5A 94.231 52 3 0 615 666 613533496 613533445 2.030000e-11 80.5
7 TraesCS5B01G430900 chr5D 91.327 588 31 9 1446 2014 491015467 491014881 0.000000e+00 785.0
8 TraesCS5B01G430900 chr5D 92.537 469 26 8 985 1450 491093123 491092661 0.000000e+00 664.0
9 TraesCS5B01G430900 chr5D 91.939 459 23 7 2020 2465 491014918 491014461 4.470000e-177 630.0
10 TraesCS5B01G430900 chr5D 94.551 312 14 3 376 685 491093650 491093340 1.710000e-131 479.0
11 TraesCS5B01G430900 chr5D 88.859 368 30 6 15 380 491094073 491093715 2.250000e-120 442.0
12 TraesCS5B01G430900 chr5D 94.444 36 2 0 529 564 22835679 22835644 3.420000e-04 56.5
13 TraesCS5B01G430900 chr2B 94.000 50 3 0 1526 1575 301667307 301667356 2.630000e-10 76.8
14 TraesCS5B01G430900 chr7B 97.297 37 1 0 627 663 504247931 504247895 2.050000e-06 63.9
15 TraesCS5B01G430900 chr6A 100.000 30 0 0 529 558 414871227 414871256 3.420000e-04 56.5
16 TraesCS5B01G430900 chr3B 94.444 36 2 0 529 564 61984835 61984800 3.420000e-04 56.5
17 TraesCS5B01G430900 chr3B 94.444 36 2 0 529 564 308711764 308711729 3.420000e-04 56.5
18 TraesCS5B01G430900 chr1A 94.444 36 2 0 529 564 120017850 120017815 3.420000e-04 56.5
19 TraesCS5B01G430900 chr1A 94.444 36 2 0 529 564 377940062 377940027 3.420000e-04 56.5
20 TraesCS5B01G430900 chr1A 100.000 30 0 0 529 558 516825576 516825605 3.420000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G430900 chr5B 605816129 605818593 2464 True 2030.000000 2769 100.000000 1 2465 2 chr5B.!!$R1 2464
1 TraesCS5B01G430900 chr5A 613532101 613534220 2119 True 596.625000 1424 91.665500 15 2120 4 chr5A.!!$R2 2105
2 TraesCS5B01G430900 chr5D 491014461 491015467 1006 True 707.500000 785 91.633000 1446 2465 2 chr5D.!!$R2 1019
3 TraesCS5B01G430900 chr5D 491092661 491094073 1412 True 528.333333 664 91.982333 15 1450 3 chr5D.!!$R3 1435

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 190 0.961753 CCAGCCAACCTGTTCCTTTC 59.038 55.0 0.0 0.0 40.06 2.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2167 2391 0.179067 TCGGGTCCGCCATTAATGTC 60.179 55.0 14.25 0.05 39.59 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 103 1.967319 TGGTGAGTTCTTCCAACTGC 58.033 50.000 0.00 0.00 0.00 4.40
162 165 6.038161 CGAACCTTGTGAGATAATAAATGCCA 59.962 38.462 0.00 0.00 0.00 4.92
163 166 6.699575 ACCTTGTGAGATAATAAATGCCAC 57.300 37.500 0.00 0.00 0.00 5.01
180 184 2.084930 ACCCTCCAGCCAACCTGTT 61.085 57.895 0.00 0.00 40.06 3.16
186 190 0.961753 CCAGCCAACCTGTTCCTTTC 59.038 55.000 0.00 0.00 40.06 2.62
192 196 3.132111 GCCAACCTGTTCCTTTCTTTGAA 59.868 43.478 0.00 0.00 0.00 2.69
197 201 3.633986 CCTGTTCCTTTCTTTGAAGTGCT 59.366 43.478 0.00 0.00 0.00 4.40
256 260 7.803279 AATTCTTCTCAGTTAACTTTCCGTT 57.197 32.000 5.07 0.00 39.64 4.44
268 272 3.412386 ACTTTCCGTTTCCTCTCCATTG 58.588 45.455 0.00 0.00 0.00 2.82
308 312 3.959535 TTTTCCCAATTCCTCACATGC 57.040 42.857 0.00 0.00 0.00 4.06
326 330 2.745102 TGCGCATATGCAATTGGATTG 58.255 42.857 26.52 15.41 43.02 2.67
337 341 6.939132 TGCAATTGGATTGTTGTGAAAATT 57.061 29.167 7.72 0.00 42.20 1.82
348 352 6.201226 TGTTGTGAAAATTAAGAGTGCACA 57.799 33.333 21.04 0.00 33.50 4.57
395 468 7.000472 ACACATAATAAAGGATGCACTATGCT 59.000 34.615 2.02 0.00 45.31 3.79
461 534 9.066892 TCCAGAACCTTGTAATAATATTGATGC 57.933 33.333 0.00 0.00 0.00 3.91
467 540 8.840321 ACCTTGTAATAATATTGATGCACTGTC 58.160 33.333 0.00 0.00 0.00 3.51
508 585 7.491048 TGAAAAACATAGAAACAGGAAAAGTGC 59.509 33.333 0.00 0.00 0.00 4.40
513 590 3.837355 AGAAACAGGAAAAGTGCAGGAT 58.163 40.909 0.00 0.00 0.00 3.24
583 661 8.291011 TCATACCGGGGGTGATATAATATCTTA 58.709 37.037 6.32 0.00 36.19 2.10
663 866 3.428045 GGAATTCTTCACGCTTTGGATGG 60.428 47.826 5.23 0.00 0.00 3.51
994 1198 4.129380 GCAATTCCTGGGCAAAATTATCC 58.871 43.478 0.00 0.00 0.00 2.59
1095 1300 2.683968 TGTCGACCACAAGTAGATTGC 58.316 47.619 14.12 0.00 43.15 3.56
1099 1304 2.668457 CGACCACAAGTAGATTGCTCAC 59.332 50.000 0.00 0.00 43.15 3.51
1101 1306 2.037251 ACCACAAGTAGATTGCTCACGT 59.963 45.455 0.00 0.00 43.15 4.49
1109 1314 2.960819 AGATTGCTCACGTGAGGTTAC 58.039 47.619 38.72 25.56 42.29 2.50
1144 1350 4.079446 CCGCTTTGCAAGAGGGAA 57.921 55.556 19.76 0.00 43.82 3.97
1173 1379 1.361668 GACGCACACATCCGCTTCAT 61.362 55.000 0.00 0.00 0.00 2.57
1256 1462 0.622665 ATCTCCTCTTGGCACTTGGG 59.377 55.000 0.00 0.00 0.00 4.12
1281 1487 1.697432 TCCGTGAAAGAATGGTGGACT 59.303 47.619 0.00 0.00 0.00 3.85
1310 1516 3.813443 CTGGCTCTAGCACACCAAATAT 58.187 45.455 4.07 0.00 44.36 1.28
1405 1612 3.384668 CACAAGAGTGTACCACTGTCAG 58.615 50.000 0.86 0.00 45.44 3.51
1433 1640 2.743636 AACATCATCAAGACCGACGT 57.256 45.000 0.00 0.00 0.00 4.34
1480 1688 5.569026 GCCAACTAGCTAGGGGTCATAATAC 60.569 48.000 24.35 6.79 0.00 1.89
1482 1690 6.952358 CCAACTAGCTAGGGGTCATAATACTA 59.048 42.308 24.35 0.00 0.00 1.82
1655 1869 7.672983 TTTTGGCAAGTTTTGTTTGATACAA 57.327 28.000 0.00 0.00 44.81 2.41
1698 1912 5.982356 AGAGACATGCTGCATTAGACTTTA 58.018 37.500 13.38 0.00 0.00 1.85
1699 1913 6.409704 AGAGACATGCTGCATTAGACTTTAA 58.590 36.000 13.38 0.00 0.00 1.52
1700 1914 6.538021 AGAGACATGCTGCATTAGACTTTAAG 59.462 38.462 13.38 0.00 0.00 1.85
1874 2098 8.289939 ACCTAATCGTGTGTAATTCTCTCTAA 57.710 34.615 0.00 0.00 0.00 2.10
2012 2236 7.962964 TTTGAATTGTTATCTCTCGTTGAGT 57.037 32.000 7.74 0.70 43.13 3.41
2013 2237 7.962964 TTGAATTGTTATCTCTCGTTGAGTT 57.037 32.000 7.74 3.57 43.13 3.01
2014 2238 7.582435 TGAATTGTTATCTCTCGTTGAGTTC 57.418 36.000 7.74 4.36 43.13 3.01
2015 2239 6.590292 TGAATTGTTATCTCTCGTTGAGTTCC 59.410 38.462 7.74 0.00 43.13 3.62
2016 2240 5.462530 TTGTTATCTCTCGTTGAGTTCCA 57.537 39.130 7.74 0.00 43.13 3.53
2017 2241 5.661056 TGTTATCTCTCGTTGAGTTCCAT 57.339 39.130 7.74 0.00 43.13 3.41
2018 2242 5.410924 TGTTATCTCTCGTTGAGTTCCATG 58.589 41.667 7.74 0.00 43.13 3.66
2045 2269 9.034544 GCAACCATCTTATTTGAATTGTTATCC 57.965 33.333 0.00 0.00 0.00 2.59
2160 2384 3.513912 AGATACACCGTCACCTTCATCAA 59.486 43.478 0.00 0.00 0.00 2.57
2161 2385 1.878953 ACACCGTCACCTTCATCAAC 58.121 50.000 0.00 0.00 0.00 3.18
2162 2386 1.140052 ACACCGTCACCTTCATCAACA 59.860 47.619 0.00 0.00 0.00 3.33
2165 2389 1.131126 CCGTCACCTTCATCAACATGC 59.869 52.381 0.00 0.00 0.00 4.06
2166 2390 2.079158 CGTCACCTTCATCAACATGCT 58.921 47.619 0.00 0.00 0.00 3.79
2167 2391 2.159612 CGTCACCTTCATCAACATGCTG 60.160 50.000 0.00 0.00 0.00 4.41
2168 2392 3.076621 GTCACCTTCATCAACATGCTGA 58.923 45.455 0.40 0.40 0.00 4.26
2169 2393 3.076621 TCACCTTCATCAACATGCTGAC 58.923 45.455 0.00 0.00 0.00 3.51
2170 2394 2.815503 CACCTTCATCAACATGCTGACA 59.184 45.455 0.00 0.00 0.00 3.58
2171 2395 3.442625 CACCTTCATCAACATGCTGACAT 59.557 43.478 0.00 0.00 36.79 3.06
2272 2508 2.822561 TCCTACATCATCGATCTGAGCC 59.177 50.000 10.65 0.00 0.00 4.70
2274 2510 0.316522 ACATCATCGATCTGAGCCGG 59.683 55.000 10.65 0.00 0.00 6.13
2351 2587 4.260170 ACTCGTTCTCTAACCGTATGACT 58.740 43.478 0.00 0.00 31.46 3.41
2357 2593 9.060347 TCGTTCTCTAACCGTATGACTTATATT 57.940 33.333 0.00 0.00 31.46 1.28
2416 2652 9.170890 ACCATAGGAATCTTGTTAGATATCCAA 57.829 33.333 0.00 0.00 40.26 3.53
2447 2683 8.141835 TGTGTGTACAATTATGATGTCTATGC 57.858 34.615 0.00 0.00 32.88 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.057969 TCTGTAAGGCTGGTCACAATG 57.942 47.619 0.00 0.00 0.00 2.82
1 2 3.327757 TCTTCTGTAAGGCTGGTCACAAT 59.672 43.478 0.00 0.00 33.22 2.71
2 3 2.703536 TCTTCTGTAAGGCTGGTCACAA 59.296 45.455 0.00 0.00 33.22 3.33
3 4 2.300152 CTCTTCTGTAAGGCTGGTCACA 59.700 50.000 0.00 0.00 33.22 3.58
4 5 2.354203 CCTCTTCTGTAAGGCTGGTCAC 60.354 54.545 0.00 0.00 33.22 3.67
5 6 1.902508 CCTCTTCTGTAAGGCTGGTCA 59.097 52.381 0.00 0.00 33.22 4.02
6 7 1.903183 ACCTCTTCTGTAAGGCTGGTC 59.097 52.381 0.00 0.00 36.01 4.02
7 8 1.625818 CACCTCTTCTGTAAGGCTGGT 59.374 52.381 0.00 0.00 36.01 4.00
8 9 1.902508 TCACCTCTTCTGTAAGGCTGG 59.097 52.381 0.00 0.00 36.01 4.85
9 10 2.676463 GCTCACCTCTTCTGTAAGGCTG 60.676 54.545 0.00 0.00 36.01 4.85
10 11 1.552792 GCTCACCTCTTCTGTAAGGCT 59.447 52.381 0.00 0.00 36.01 4.58
11 12 1.276421 TGCTCACCTCTTCTGTAAGGC 59.724 52.381 0.00 0.00 36.01 4.35
12 13 2.672478 CGTGCTCACCTCTTCTGTAAGG 60.672 54.545 0.00 0.00 38.70 2.69
13 14 2.600731 CGTGCTCACCTCTTCTGTAAG 58.399 52.381 0.00 0.00 0.00 2.34
17 18 0.318441 TTCCGTGCTCACCTCTTCTG 59.682 55.000 0.00 0.00 0.00 3.02
83 86 2.805099 CTCTGCAGTTGGAAGAACTCAC 59.195 50.000 14.67 0.00 0.00 3.51
162 165 2.069165 GAACAGGTTGGCTGGAGGGT 62.069 60.000 0.00 0.00 0.00 4.34
163 166 1.303643 GAACAGGTTGGCTGGAGGG 60.304 63.158 0.00 0.00 0.00 4.30
180 184 5.290493 TCACTAGCACTTCAAAGAAAGGA 57.710 39.130 0.00 0.00 0.00 3.36
186 190 5.471456 AGGACAATTCACTAGCACTTCAAAG 59.529 40.000 0.00 0.00 0.00 2.77
192 196 4.772624 TGAGTAGGACAATTCACTAGCACT 59.227 41.667 0.00 0.00 0.00 4.40
197 201 5.185249 GTGGTCTGAGTAGGACAATTCACTA 59.815 44.000 0.00 0.00 35.61 2.74
242 246 4.102054 TGGAGAGGAAACGGAAAGTTAACT 59.898 41.667 1.12 1.12 43.37 2.24
254 258 2.489722 GCCAAGTCAATGGAGAGGAAAC 59.510 50.000 0.00 0.00 43.54 2.78
256 260 1.704628 TGCCAAGTCAATGGAGAGGAA 59.295 47.619 0.00 0.00 43.54 3.36
268 272 6.313658 GGAAAATGGTTGATTTATGCCAAGTC 59.686 38.462 0.00 0.00 32.76 3.01
308 312 4.026393 CACAACAATCCAATTGCATATGCG 60.026 41.667 22.21 8.12 43.98 4.73
326 330 6.346040 GCATGTGCACTCTTAATTTTCACAAC 60.346 38.462 19.41 0.00 41.59 3.32
337 341 0.740868 GAGGCGCATGTGCACTCTTA 60.741 55.000 30.73 0.00 39.84 2.10
342 346 3.372676 CTTCGAGGCGCATGTGCAC 62.373 63.158 30.73 21.93 42.21 4.57
348 352 1.450312 CCTTTCCTTCGAGGCGCAT 60.450 57.895 10.83 0.00 34.61 4.73
395 468 5.505324 CCATTTACGTGTTTCCGGTGTAAAA 60.505 40.000 0.00 0.00 38.18 1.52
461 534 6.471233 TCATATCCTACTTTCCAGACAGTG 57.529 41.667 0.00 0.00 0.00 3.66
505 581 8.783833 ACACAAGATATTATATCATCCTGCAC 57.216 34.615 13.87 0.00 0.00 4.57
562 639 6.557253 TCCATAAGATATTATATCACCCCCGG 59.443 42.308 13.87 0.00 0.00 5.73
583 661 8.299570 GTGTTTCAGATTTCTGTACAAATCCAT 58.700 33.333 14.08 0.00 41.82 3.41
624 827 0.320374 TCCTGGATGTGGTGAACGAC 59.680 55.000 0.00 0.00 0.00 4.34
663 866 4.029529 GTCGTCGACGTGGAAGTTAATAAC 59.970 45.833 34.40 18.06 40.80 1.89
966 1170 2.649129 GCCCAGGAATTGCGCCTTT 61.649 57.895 4.18 0.00 32.12 3.11
967 1171 3.070576 GCCCAGGAATTGCGCCTT 61.071 61.111 4.18 0.00 32.12 4.35
968 1172 3.884704 TTGCCCAGGAATTGCGCCT 62.885 57.895 4.18 0.00 35.75 5.52
969 1173 2.447586 TTTTGCCCAGGAATTGCGCC 62.448 55.000 4.18 0.00 29.24 6.53
970 1174 0.391528 ATTTTGCCCAGGAATTGCGC 60.392 50.000 0.00 0.00 0.00 6.09
971 1175 2.097680 AATTTTGCCCAGGAATTGCG 57.902 45.000 0.00 0.00 0.00 4.85
972 1176 4.129380 GGATAATTTTGCCCAGGAATTGC 58.871 43.478 0.00 0.00 0.00 3.56
973 1177 4.444733 GGGGATAATTTTGCCCAGGAATTG 60.445 45.833 18.59 0.00 46.14 2.32
994 1198 6.693599 TCCTAATCATATAGTCCATAGGGGG 58.306 44.000 0.00 0.00 37.22 5.40
1015 1219 1.566298 GGTGGTGCCCAGATCTTCCT 61.566 60.000 0.00 0.00 32.34 3.36
1079 1284 2.668457 CGTGAGCAATCTACTTGTGGTC 59.332 50.000 0.00 0.00 39.62 4.02
1095 1300 3.813166 ACAATTTGGTAACCTCACGTGAG 59.187 43.478 33.87 33.87 41.71 3.51
1099 1304 3.552604 CCACAATTTGGTAACCTCACG 57.447 47.619 0.78 0.00 41.10 4.35
1144 1350 1.299926 GTGTGCGTCGGTCTCTTGT 60.300 57.895 0.00 0.00 0.00 3.16
1173 1379 3.362706 AGTCTCAAGGTGAAGCGGTATA 58.637 45.455 0.00 0.00 0.00 1.47
1256 1462 1.425428 CATTCTTTCACGGAGCGGC 59.575 57.895 0.00 0.00 0.00 6.53
1281 1487 2.432300 GCTAGAGCCAGCCCGGTTA 61.432 63.158 0.00 0.00 35.40 2.85
1310 1516 2.760092 GTGAGGGATGCAATGGCTTTTA 59.240 45.455 0.00 0.00 41.91 1.52
1339 1545 7.602265 CCTTTCGTTCCAAATTGTCCAAATAAT 59.398 33.333 0.00 0.00 0.00 1.28
1394 1601 4.100344 TGTTTAGCAAGACTGACAGTGGTA 59.900 41.667 14.14 6.11 0.00 3.25
1433 1640 2.253758 GCAGCGACACAAAGGCTCA 61.254 57.895 0.00 0.00 34.13 4.26
1501 1709 4.156008 GTGTTACAAGCATCACCCCTTTAG 59.844 45.833 0.00 0.00 0.00 1.85
1655 1869 7.888021 TGTCTCTTGTATCTCTCTTTCTCTCTT 59.112 37.037 0.00 0.00 0.00 2.85
1698 1912 9.508642 AGAGAATTCGAGAATTAGGTTTTTCTT 57.491 29.630 10.64 0.00 40.77 2.52
1699 1913 9.508642 AAGAGAATTCGAGAATTAGGTTTTTCT 57.491 29.630 10.64 3.07 40.77 2.52
1891 2115 4.283212 TGCCATGGAACTACATATCGATGA 59.717 41.667 18.40 0.00 34.77 2.92
1893 2117 4.890158 TGCCATGGAACTACATATCGAT 57.110 40.909 18.40 2.16 0.00 3.59
2002 2226 0.684535 TGCCATGGAACTCAACGAGA 59.315 50.000 18.40 0.00 33.32 4.04
2003 2227 1.197721 GTTGCCATGGAACTCAACGAG 59.802 52.381 18.40 0.00 35.52 4.18
2004 2228 1.234821 GTTGCCATGGAACTCAACGA 58.765 50.000 18.40 0.00 31.07 3.85
2005 2229 0.240945 GGTTGCCATGGAACTCAACG 59.759 55.000 18.40 0.00 39.56 4.10
2006 2230 1.327303 TGGTTGCCATGGAACTCAAC 58.673 50.000 18.40 18.93 38.36 3.18
2007 2231 2.170166 GATGGTTGCCATGGAACTCAA 58.830 47.619 18.40 7.22 45.26 3.02
2008 2232 1.355381 AGATGGTTGCCATGGAACTCA 59.645 47.619 18.40 15.58 45.26 3.41
2009 2233 2.134789 AGATGGTTGCCATGGAACTC 57.865 50.000 18.40 11.11 45.26 3.01
2010 2234 2.610438 AAGATGGTTGCCATGGAACT 57.390 45.000 18.40 0.00 45.26 3.01
2011 2235 5.105392 TCAAATAAGATGGTTGCCATGGAAC 60.105 40.000 18.40 16.20 45.26 3.62
2012 2236 5.022122 TCAAATAAGATGGTTGCCATGGAA 58.978 37.500 18.40 0.00 45.26 3.53
2013 2237 4.608269 TCAAATAAGATGGTTGCCATGGA 58.392 39.130 18.40 0.00 45.26 3.41
2014 2238 5.341872 TTCAAATAAGATGGTTGCCATGG 57.658 39.130 7.63 7.63 45.26 3.66
2015 2239 6.819649 ACAATTCAAATAAGATGGTTGCCATG 59.180 34.615 5.27 0.00 45.26 3.66
2017 2241 6.357579 ACAATTCAAATAAGATGGTTGCCA 57.642 33.333 0.00 0.00 38.19 4.92
2018 2242 8.947055 ATAACAATTCAAATAAGATGGTTGCC 57.053 30.769 0.00 0.00 0.00 4.52
2045 2269 5.862924 ACATTGATACAAACTCAACGAGG 57.137 39.130 0.00 0.00 35.57 4.63
2114 2338 9.241317 TCTCCGTATCTCGATGTTTTAATTTAC 57.759 33.333 0.00 0.00 42.86 2.01
2160 2384 1.677576 CCGCCATTAATGTCAGCATGT 59.322 47.619 14.25 0.00 37.40 3.21
2161 2385 1.948834 TCCGCCATTAATGTCAGCATG 59.051 47.619 14.25 5.35 35.15 4.06
2162 2386 1.949525 GTCCGCCATTAATGTCAGCAT 59.050 47.619 14.25 0.00 36.80 3.79
2165 2389 1.308998 GGGTCCGCCATTAATGTCAG 58.691 55.000 14.25 5.13 36.17 3.51
2166 2390 0.462937 CGGGTCCGCCATTAATGTCA 60.463 55.000 14.25 0.00 36.17 3.58
2167 2391 0.179067 TCGGGTCCGCCATTAATGTC 60.179 55.000 14.25 0.05 39.59 3.06
2168 2392 0.472471 ATCGGGTCCGCCATTAATGT 59.528 50.000 14.25 0.00 39.59 2.71
2169 2393 1.535462 GAATCGGGTCCGCCATTAATG 59.465 52.381 8.58 8.58 39.59 1.90
2170 2394 1.142060 TGAATCGGGTCCGCCATTAAT 59.858 47.619 4.27 0.00 39.59 1.40
2171 2395 0.542333 TGAATCGGGTCCGCCATTAA 59.458 50.000 4.27 0.00 39.59 1.40
2248 2484 5.101628 GCTCAGATCGATGATGTAGGATTC 58.898 45.833 0.54 0.00 0.00 2.52
2254 2490 1.541588 CCGGCTCAGATCGATGATGTA 59.458 52.381 0.54 0.00 0.00 2.29
2259 2495 3.303881 TTTATCCGGCTCAGATCGATG 57.696 47.619 0.54 0.00 0.00 3.84
2260 2496 3.322254 ACTTTTATCCGGCTCAGATCGAT 59.678 43.478 0.00 0.00 0.00 3.59
2427 2663 8.092521 AGCAAGCATAGACATCATAATTGTAC 57.907 34.615 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.