>input_sequence_79426
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---ATGGACTATATGATTAGGAAGATCTGGGCACCACCTAATGTCATTTTTTTA-CTTGGTTGGCCATTCAAGATAGAAT
GTCGACCACAAGTAGATTGCTCACGTGAGGTTACC-AAATTGTGGTCTTTGTCCGCTTTGCAAGAGGGAACAAGAGACCG
ACGCACACATCCGCTTCATATACCGCTTCACCTTGAGACTTTGGAGTTTGGTAAAACATTGGTTGCATCTCGAGACGTCG
ATATCTCCTCTTGGCACTTGGGCCGCTCCGTGAAAGAATGGTGGACTAACCGGGCTGGCTCTAGCACACCAAATATAAAA
GCCATTGCATCCCTCACGATGCTCATTATTTGGACAATTTGGAACG-AAAGGAATGCAGTGCTCTACCTGCACAAGAGTG
TACCACTGTCAGTCTTGCTAAACATCATCAAGACCGACGTGAGCCTTT-GTGTCGCTGCAGGTGCCAACTAG--------
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>chr5B_1_TraesCS5B01G430900
CATTGTGACCAGCCTTACAGAAGAGGTGAGCACGGAATGCAAGC-AAGGCACCGCACGGGGTTG-TTTTTTGCACTGAAA
CCATGGTGAGTTCTTCCAACTGCAGAGTGCTCTGATGTCCGTGAGATTTATGCGTCGATCGAACCTTGTGAGATAATAAA
TGCCAC-CCTCCAGCCAACCTGTTCCTTTCTTTGAAGTGCTAGTGAATTGTCCTACTCAGACCACGGACAGAAAAAATTC
TTCTCAGTTAACTTTCCGTTTCCTCTCCATTGACTTGGCATAAATCAACCATTTTCCCAATTCCTCACATGCGCATATGC
AATTGGATTGTTGTGAAAATTAAGAGTGCACATGCGCCTCGAAGGAAAGGCAAACACATAATA-----------------
----------------------------------------------------AAGGATGCACTATGCTTTTACACCGGAA
ACACGTAAATGGTGTGTACGGTGTAAATCCAGAACCTTGTAATAATATTGATGCACTGTCTGGAAAGTAG---GATATGA
AAAACATAGAAACAGGAAAAG-TGCAGGATGATATAATATCTTGTGTTGATTGTTTTTGAGATAGCTAACCGCTCATACC
G-GGGGTGATATAATATCTTATGGATTTGTACAGAAATCTGAAACACATAA-----------------------------
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----------------ATGGTACAACGTCGTTCACCACATCCAGGAATTCTTCACGCTTTGGATGGTTATTAAC-TTCCA
CGTCGACGACCTCGCGGAGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGGCGCAATTCCTGGGCAAAATTATCCCC
CCTATGGACTATATGATTAGGAAGATCTGGGCACCACCTAATGTCATTTTTTTA-CTTGGTTGGCCATTCAAGATAGAAT
GTCGACCACAAGTAGATTGCTCACGTGAGGTTACC-AAATTGTGGTCTTTGTCCGCTTTGCAAGAGGGAACAAGAGACCG
ACGCACACATCCGCTTCATATACCGCTTCACCTTGAGACTTTGGAGTTTGGTAAAACATTGGTTGCATCTCGAGACGTCG
ATATCTCCTCTTGGCACTTGGGCCGCTCCGTGAAAGAATGGTGGACTAACCGGGCTGGCTCTAGCACACCAAATATAAAA
GCCATTGCATCCCTCACGATGCTCATTATTTGGACAATTTGGAACG-AAAGGAATGCAGTGCTCTACCTGCACAAGAGTG
TACCACTGTCAGTCTTGCTAAACATCATCAAGACCGACGTGAGCCTTT-GTGTCGCTGCAGGTGCCAACTAGCTAGGGGT
CATAATACTAGGAGAGTGATCATTCGATCTAAAGGGGTGATGCTTGTAACACAACTCTATTCTCTTCTTAATTAGTGGAT
GAGGCCAATCTTTTGCCTCCATGTTGAAATAAATAAATAAATGG-----TACAACATAGCTATTTGGACCCCACAAATAT
A-TTTTTTGGCAAGTTTTGTTTGATACAAAGAGAGAAAGAGAGATACAAGAGACATGCTGCATTAGACTTTAAG------
--AAAAACCTAATTCTCGAATTCTCTTAAATACTGAGAAACTTGCTGATAAATTACATCCACTTATTTTAATAGTAGGAT
GATTAAGAATTATTTCTTTTTGAATCTAATGAAAACAATATCTATTATGTGTTGAT-AA-TTTTTTGTTATAACCTAATC
GTGTGTAATTCTCTCTAATTATAAGGTAGTATTATCATCGATATGTAGTTCCATGGCATATAATTGTATAAGTATAACAA
TTTTTATTGTTTGTATAAATTTAGATAGACAACTTGATAACTGAATTTTTATTTGAATTGTTATCTCTCGTTGAGTTCCA
TGGCAACCATCTTATTTGAATTGTTATCCCTCGTTGAGTTTGTATCAATGTTCACTCGAGCTCTTACATAAATGAGTTCT
TAAACTGCAAAAAATATGTAAATTAAAACATCGAGATACGGAGATACACCGTCACCTTCATCAACATGCTGACAT-----
-------TAATGGCGGACCCGATTCACTCGTGAGAGAGTTAAACAAATTTAGGAAATATAATTTGAAAATGTATATAATG
AATGAATCCTACATCATCGATCTGAGCCGGATAAAAGTATACAATTTTTATTTATTTATACTGAACACTTTTACTTTTTA
TATAACTCGTTCTCTAACCGTATGACTTATATTGGTATATTTCATTATTATGTTTAGAGAAACTAACCATAGGAATCTTG
TTAGATATCCAATTAATTGTGTGTACAATTATGATGTCTATGCTTGCTAATACACTTGCA
>chr5A_15
--------------TTAAAGAAAAGGTGAGCACGGAATGCAAGC-GAGGCACCGCATGGGGTTATTTTTTTGCGCTGAAA
CCATGATGAGTTCTTCCAACTGTAGAGTGCTCTGATGTCCGTGAGATTCATGCGTCGATC----CTTGTGAAATTATAAA
TGCCCATCCTCCGGCCAACCTGTGCTTTT-TTTGATGTGCCAGTGAATTGTCCTACTCAGACCACGGACAGAAAACATTC
TTCTCGGTTTACTTTCCATCTCCTCTCCGTTCACTTGGCATAAATCTACCATTTTCCCAATTCCTCACATGTGCATACGC
AATTGGATTATTGTGAAAGTAAAGAATGTG--TGCGCCTCGAAGGGAAGGCAAACACATAATA-----------------
----------------------------------------------------AAGGATGCACTATGC-TCTACACCGGAA
ACACGTAAATGGCGTGTGCGATGTAAATCCAGAACCTTGTAATAATATTGATGGACTGTTTGGAAAGTAGTAGGAGATGA
AAAACATAGAAACAGGAAAAACTGTAGGACGATATAATATCTTGTGTTGATTGTTTTTGAGATAGCTAACCGCTCATATC
AAGCGGTTATATAATATTTTCTGGATTTGTACAAAAATCTGAAACACATACTCCCTTCGTTTCAAATTACTTGTCTTGGA
TTTGTCTAGATACGGATGTATCTAGATTCATTTTAGTGCTAGATACCTCCGTATCTAGATAAATCTAAGACAAGTAATTC
GGAATGGAGGGAGTATATGGTACAACATCGTTCACCACATCCAGGAATTCTTCACTCTTTGGATGCTT------------
----GATGACCTCGCGGAGGATGACATAATTTGGAAGCACACAGCAGTGGTATCTACTCAGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------
---------------------------------------------------------AATTCTTGGGCAAAATTATCTCC
CCTATGGACTATATGATTTGGAAGATCTGGGCACCACCTAATGTCAATTTTTTTGCTTGGTTGGCCATTCAAGATAGAAT
GTCAACCACAAGTAGATTGGTCAAGCGAAGTTAGCTAAATTATGGTCTTTGTCCACTTTGCAAGAGAGAGCAAGAGACCG
ACGCACACATCCGCTTCAAGTACCGCTTCACCTTGAGACTTTGGAGTTTCGTAAAACATTGGTTGCATCTCGAGACGTCG
ATATCTCCTCTTGGCACTTGGACCGCTCTGTGAAAGAATGGTGGACCAACCGGGCTGGCTCTAGCACACCAAATAGAAAA
GCCACTGCATCCCTCATGGTGCTCGTTATTTGGACAATTTGGAACAAAAAGGAATGCAATGCTCTACCTGCACAAGAGTG
CACCACTGGCAATCTTGCTAAACATCATCAAGACCGACGCGAGCCTTT-GTGTCGCTGCAGGTGCCAACTAGCTAGGGGT
CATAATATTGGGAGAGTGATCATTCAATGTAAAGGGATGATGCTTGTAACACAACTCTATTCTCTTCTTAATTAGTGGAC
GAGGCCAATCTTTTGCCTCCATGTTGAAATAAATAAATAAATGGTACTCTACAACGTAGCTATTTGGACCTCACAAATAT
ATTTTTTTGGCAAGTTTTGTTTGATACAGAGAGAGAAAGAGAGATACAAGAGACATGCTGCATTAGACTTTTCAAAGAAA
AAATAATTCTT------GAATTCCCTTAAATACTGAGAAACTTGCTGATAAATTACATTCACTTATTTCAATAGTAGGAT
GGTTAAGAATTATTTTTATTTGAATCTAACGATAACAATATCCATCATGTGTTGAT-ATTTTTTTTGTTATAACATAATC
TTGTGCAATTGTCTCTAGTTATAAGGTAATATTACCGTCGATATGTAGTTCCATGCCATATAATTGTATAAGGCTAACAT
TTTT-ATTATTTGTATAAATTCAGATAGACAGTTTGATAACTGAATTT--------------------------------
--GCAATCATCTTATTTCAATTGTTATCTCTCGTTGAGTTTGTATCAATGTTCACTCGAGGTCTTACATAAATGAGTTCT
TAAACTGCAATATATATATATAT---------------------------------------------------------
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>chr5D_15
--------------TTAAAGATGAGGTGAACTCGGAATGCAAAGGGAGGCACCGCACGGGGTTG-TTTTTTGCACTGAAC
CCATGATGAGTTCTTCCAACTGTAGACTGCTCTGATGTCCGTGAGATTTATGCGTCGATCGAACCTTGTGAGATAATAAA
TGCCCATCCTCCAGCCAACCTGTGCC---------TGTGCCTGTGAATTGTCCTACTCAGACCACGGACAGAAAAAGTTC
TTCTCGGTTAACTTTCCATCTCCTCTCAATTCACTTGGCATAAATCAATCATTTTCCCAATTCCTCACATGTGCATATGC
AATTGGATTATTGTGAAAATAAAGGATGCACTTGCGCCTGCAAGGAAAGGCAAACACATACTACCTCCGTTCCAAAATAG
ATGACTGTTAGTACAAAGTTAAGTCATCTATTTTGGAACGGAGGGAGTAATAAAGAATGCACTATGC-TTTACACCGGAA
ACACGTAAATGGTGTGTACGGTGCAAATCCAGAACCTTGTAATAATATTGATGGACTGTTTGGAA---AGTAGGATATGA
AAAACATAGAAACAGGAAAA-CTGTAAGACGATATAATATCTTGTGTTGATTGTTTTTGAGATAGCTAACCGCTCATAAC
AAGGGGTGATATAATATCTTCTGGATTTGTACAGAAATCTGAAACACATAA-----------------------------
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----------------ATGGTACAACATCGTTCACCACATCCAGGAATTCTTCAAGCTTTGGATGCTTATTAACCTTCCA
CGTCGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------------
-------------------------------------------------------------------CAAAATTCTCTCA
CCTATGGACTATATGATTTGGAAGATCTGGGCACCACCTAATGTCAATTGTTTTGCTTGGTTGGCCATTTAAA----AAT
GTCAACCACAAGTAGATTGGTCAAGCGAGGTTAGATAAATTGTGGTCTTTGTCCGCTTTGCAAGAGGGAGCAAGAGACCG
ACGCACACATCCGCTTCAAATACCGCTTCATCTTGAGACTTTGGAGTTTGGTAAAACATTGGTTGCATCTCGAG--GTCG
ATATCTCCTCTTGGCACTTGGACCGCTCCGTGAAAGAATGGTGGACCAACCGGGCTGGCTCTAGCACACCAAATAGAAAA
GCCATTGCATCCCTCACGATGCTCGTTATTTGGACAATTTGGAACG-AAAGGAATGCAGTGCTCTACCTGCACAAGAGTG
CACCACCGTCAATCTTGCTAAACATCATCAAGACCGGTGCGAGCCTTTTGTGTCGCT-----------------------
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>chr5D_1446
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----------------------------------------------------TCGCTGCAGGTGTCAACTAGCTAGGGGT
CATAATATTGGGAGAGTGATCATTCGATGTAAAGGGGTGATGCTTGTAACACAACTCTATTCTCTTCTTAATTAGTGGAC
GAGGCCAATCTTTCGCTACCATGTTGAAATAAATAAATAAATGGTAC-----AACATAACTATTTGGACCCCACAAATAT
ACC-TTTTGGCAAGTTTTGTTTGATACAGAGAGAGAAAGAGAGATAGAAGAGACATGCTGCATTAGACTTTTCAAAATAA
ATAAATACCTAATTCTCGAATTCTCTTAAATACTGAGAAACTTGCTGATAAATTACATCCACTTATTTTAATAGTAGGAT
GGTTAAGAATTATTTCTGTTTGAATCTAACGATAACAATATCTATTATGTGTTGATAATTTTTTTTGTTATAACCTAATC
TTGTGCAGTTCTCTCTTGTTATAAGGTAGTATTACCGTTGATATGTAGTTCAATGGCATATAATTGTATAAGCATAACAT
TTTT-ATTGTTTGTATAAATTCAGATAGACAACTTGATAACTGAAGTT--------------------------------
--GCAACCATCTTATTTGAATTGTTATCTCTCACTGAGTTTGTATCAATGTTCACTCGAGCTCTTACATAAATGAGTTCT
TAAACTGCAAGAGATATATAAATTAAAACATCGAGATACGGAGATACACCGTCACCTTCATCATACTGACATACCCATTT
TTGTTGGTAATGGCGGACCCGATTCACTCGTGAGAGAGGTAAACAAATTTAGGAAATATAACTTGAAAATGTATATAATG
AATTAATCCCACATTGTCGATCTGAGCTGAATAAAAGTATACAATTTTTATCTATTTATACTAAACACTTTTACTTTTTA
TATAACTCGTTCTCTAACCGTATGACCTATATCGGTATATTTCATTATTATGTTTAGAGAAACTAACCATAGGAATCTTG
TTAGATATCCAGTTAATTGTGTTTACAATTATGATGTCTATGGTTGCTAATACACTTGCA
>SNPs
SSSSSSSSSSSSSS---S---------------------------S----------------------------------
-----S----------------S---------------------------------------------------------
----SS-----------------S-----S-----S----S---------------------------------------
-----S-----------S-S-----------S---------------------------------------S--------
---------S----------S----S-----S------------------------------------------------
-------------------------------------------------------------------S------------
-----------------------------------------------------S-----S--------------------
--------------------S---S----S------------------------------------------------S-
S-------------------S-----------------------------------------------------------
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--------------------------S--------------------------------------S--------------
---------------------S----------------------------------------------------------
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-----------------------------------------------------------------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--------------S--
------------------S---------------------------S------S--------------------------
---S---------------S---S-S-------S-----------------------------------S----------
------------------S-------------------------------------------------------------
---------------------S------------------------S----------------------------S----
------------------------S-------------------------------------------------------
S----------S---------------------------S----------------------------------------
-------S-S------------------S--------------------------------------------------S
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----------------------------S------------------------------------------SSS------
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-S---------------S-----------S--S-------------------------S---------------------
S----S-----------S----------------S-S-----------------------------------S------S
----S----------------S--------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS--------------------------S---------------------------------------------------
----------S-S----S---------------------------------------------SSS--SSSSSSS-----
--------------------------------------S----------------------S------------------
---S-----S----SS-----------S-S---------------------S----------S-----------------
--------------------------S-----S-----------------------------------------------
-----------S----------S-------------------S-----------------
>forward_190
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----------CCAGCCAACCTGTTCCTTTC--------------------------------------------------
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>reverse_2391
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----------------------------------------------------------------------GACATTAATG
GCGGACCCGA----------------------------------------------------------------------
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