Multiple sequence alignment - TraesCS5B01G428100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G428100 chr5B 100.000 2609 0 0 1 2609 603983864 603986472 0.000000e+00 4819.0
1 TraesCS5B01G428100 chr5B 93.714 350 21 1 3 352 364110068 364110416 8.270000e-145 523.0
2 TraesCS5B01G428100 chr5A 91.455 2200 90 39 445 2590 611541736 611543891 0.000000e+00 2931.0
3 TraesCS5B01G428100 chr5A 94.872 39 1 1 421 459 634085071 634085108 2.800000e-05 60.2
4 TraesCS5B01G428100 chr5D 89.304 2197 118 57 463 2590 489806237 489808385 0.000000e+00 2647.0
5 TraesCS5B01G428100 chr5D 87.252 353 42 3 1 351 447218885 447218534 1.450000e-107 399.0
6 TraesCS5B01G428100 chr7D 88.385 353 39 2 1 351 127283229 127282877 8.630000e-115 424.0
7 TraesCS5B01G428100 chr3B 87.755 343 40 2 8 349 26666853 26667194 1.450000e-107 399.0
8 TraesCS5B01G428100 chr1B 81.560 282 46 3 1306 1587 627820572 627820847 7.260000e-56 228.0
9 TraesCS5B01G428100 chr1B 86.243 189 26 0 1399 1587 639423953 639424141 3.400000e-49 206.0
10 TraesCS5B01G428100 chr1B 97.368 38 1 0 424 461 564918769 564918806 6.030000e-07 65.8
11 TraesCS5B01G428100 chr1D 79.872 313 50 9 1290 1597 5443636 5443940 1.570000e-52 217.0
12 TraesCS5B01G428100 chr1D 95.122 41 2 0 424 464 470222047 470222007 6.030000e-07 65.8
13 TraesCS5B01G428100 chr7A 79.299 314 55 7 1290 1598 692331729 692331421 7.320000e-51 211.0
14 TraesCS5B01G428100 chr3D 97.297 37 1 0 425 461 575110582 575110546 2.170000e-06 63.9
15 TraesCS5B01G428100 chr3D 97.143 35 1 0 425 459 126940294 126940260 2.800000e-05 60.2
16 TraesCS5B01G428100 chr1A 97.297 37 1 0 425 461 71725634 71725670 2.170000e-06 63.9
17 TraesCS5B01G428100 chr1A 95.000 40 2 0 422 461 579277019 579276980 2.170000e-06 63.9
18 TraesCS5B01G428100 chr2D 94.872 39 2 0 423 461 593024308 593024346 7.800000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G428100 chr5B 603983864 603986472 2608 False 4819 4819 100.000 1 2609 1 chr5B.!!$F2 2608
1 TraesCS5B01G428100 chr5A 611541736 611543891 2155 False 2931 2931 91.455 445 2590 1 chr5A.!!$F1 2145
2 TraesCS5B01G428100 chr5D 489806237 489808385 2148 False 2647 2647 89.304 463 2590 1 chr5D.!!$F1 2127

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 319 0.033504 GACCTCGTGTTGGCTGAAGA 59.966 55.0 0.0 0.0 0.0 2.87 F
319 320 0.034059 ACCTCGTGTTGGCTGAAGAG 59.966 55.0 0.0 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1146 1182 1.323271 TGCAGAAGTAGGAGGCGAGG 61.323 60.0 0.00 0.00 0.00 4.63 R
1810 1850 2.037772 ACCATCTGTATCCGGATTCAGC 59.962 50.0 34.35 19.04 36.52 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.357279 GGCACTTCTGGCTGGGCT 62.357 66.667 0.00 0.00 39.91 5.19
19 20 3.060615 GCACTTCTGGCTGGGCTG 61.061 66.667 0.00 0.00 0.00 4.85
20 21 3.060615 CACTTCTGGCTGGGCTGC 61.061 66.667 0.00 0.00 0.00 5.25
21 22 4.711949 ACTTCTGGCTGGGCTGCG 62.712 66.667 0.00 0.00 0.00 5.18
22 23 4.711949 CTTCTGGCTGGGCTGCGT 62.712 66.667 0.00 0.00 0.00 5.24
23 24 4.704833 TTCTGGCTGGGCTGCGTC 62.705 66.667 0.00 0.00 0.00 5.19
29 30 4.320456 CTGGGCTGCGTCACCTGT 62.320 66.667 0.00 0.00 0.00 4.00
30 31 4.314440 TGGGCTGCGTCACCTGTC 62.314 66.667 0.00 0.00 0.00 3.51
36 37 4.057428 GCGTCACCTGTCCGCTCT 62.057 66.667 0.00 0.00 43.81 4.09
37 38 2.126307 CGTCACCTGTCCGCTCTG 60.126 66.667 0.00 0.00 0.00 3.35
38 39 2.920645 CGTCACCTGTCCGCTCTGT 61.921 63.158 0.00 0.00 0.00 3.41
39 40 1.583495 CGTCACCTGTCCGCTCTGTA 61.583 60.000 0.00 0.00 0.00 2.74
40 41 0.818296 GTCACCTGTCCGCTCTGTAT 59.182 55.000 0.00 0.00 0.00 2.29
41 42 2.022195 GTCACCTGTCCGCTCTGTATA 58.978 52.381 0.00 0.00 0.00 1.47
42 43 2.033550 GTCACCTGTCCGCTCTGTATAG 59.966 54.545 0.00 0.00 0.00 1.31
43 44 2.092592 TCACCTGTCCGCTCTGTATAGA 60.093 50.000 0.00 0.00 0.00 1.98
55 56 5.495926 CTCTGTATAGAGGCCCAATGATT 57.504 43.478 8.57 0.00 45.47 2.57
56 57 5.233083 TCTGTATAGAGGCCCAATGATTG 57.767 43.478 0.00 0.00 0.00 2.67
57 58 3.754965 TGTATAGAGGCCCAATGATTGC 58.245 45.455 0.00 0.00 0.00 3.56
58 59 1.901591 ATAGAGGCCCAATGATTGCG 58.098 50.000 0.00 0.00 0.00 4.85
59 60 0.836606 TAGAGGCCCAATGATTGCGA 59.163 50.000 0.00 0.00 0.00 5.10
60 61 0.034186 AGAGGCCCAATGATTGCGAA 60.034 50.000 0.00 0.00 0.00 4.70
61 62 0.817013 GAGGCCCAATGATTGCGAAA 59.183 50.000 0.00 0.00 0.00 3.46
62 63 1.204467 GAGGCCCAATGATTGCGAAAA 59.796 47.619 0.00 0.00 0.00 2.29
63 64 1.066929 AGGCCCAATGATTGCGAAAAC 60.067 47.619 0.00 0.00 0.00 2.43
64 65 1.337635 GGCCCAATGATTGCGAAAACA 60.338 47.619 0.00 0.00 0.00 2.83
65 66 1.994779 GCCCAATGATTGCGAAAACAG 59.005 47.619 0.00 0.00 0.00 3.16
66 67 2.352617 GCCCAATGATTGCGAAAACAGA 60.353 45.455 0.00 0.00 0.00 3.41
67 68 3.244976 CCCAATGATTGCGAAAACAGAC 58.755 45.455 0.00 0.00 0.00 3.51
68 69 3.057315 CCCAATGATTGCGAAAACAGACT 60.057 43.478 0.00 0.00 0.00 3.24
69 70 3.916172 CCAATGATTGCGAAAACAGACTG 59.084 43.478 0.00 0.00 0.00 3.51
70 71 2.686558 TGATTGCGAAAACAGACTGC 57.313 45.000 1.25 0.00 0.00 4.40
71 72 1.946081 TGATTGCGAAAACAGACTGCA 59.054 42.857 1.25 0.00 0.00 4.41
72 73 2.553602 TGATTGCGAAAACAGACTGCAT 59.446 40.909 1.25 0.00 35.20 3.96
73 74 2.404265 TTGCGAAAACAGACTGCATG 57.596 45.000 1.25 0.00 35.20 4.06
74 75 0.040157 TGCGAAAACAGACTGCATGC 60.040 50.000 11.82 11.82 0.00 4.06
75 76 0.040157 GCGAAAACAGACTGCATGCA 60.040 50.000 21.29 21.29 0.00 3.96
76 77 1.678360 CGAAAACAGACTGCATGCAC 58.322 50.000 18.46 8.42 0.00 4.57
77 78 1.002576 CGAAAACAGACTGCATGCACA 60.003 47.619 18.46 0.00 0.00 4.57
78 79 2.351060 CGAAAACAGACTGCATGCACAT 60.351 45.455 18.46 8.00 0.00 3.21
79 80 3.645884 GAAAACAGACTGCATGCACATT 58.354 40.909 18.46 3.52 0.00 2.71
80 81 2.717580 AACAGACTGCATGCACATTG 57.282 45.000 18.46 16.48 0.00 2.82
81 82 0.242825 ACAGACTGCATGCACATTGC 59.757 50.000 18.46 3.77 45.29 3.56
92 93 2.617250 GCACATTGCGAATGAACTCA 57.383 45.000 13.53 0.00 41.46 3.41
93 94 2.512885 GCACATTGCGAATGAACTCAG 58.487 47.619 13.53 0.00 41.46 3.35
94 95 2.730090 GCACATTGCGAATGAACTCAGG 60.730 50.000 13.53 0.00 41.46 3.86
95 96 1.470098 ACATTGCGAATGAACTCAGGC 59.530 47.619 13.53 0.00 41.46 4.85
96 97 1.098050 ATTGCGAATGAACTCAGGCC 58.902 50.000 0.00 0.00 0.00 5.19
97 98 1.298157 TTGCGAATGAACTCAGGCCG 61.298 55.000 0.00 0.00 0.00 6.13
98 99 2.464459 GCGAATGAACTCAGGCCGG 61.464 63.158 0.00 0.00 0.00 6.13
99 100 1.815421 CGAATGAACTCAGGCCGGG 60.815 63.158 2.18 0.00 0.00 5.73
100 101 2.044946 AATGAACTCAGGCCGGGC 60.045 61.111 22.67 22.67 0.00 6.13
101 102 2.819984 GAATGAACTCAGGCCGGGCA 62.820 60.000 31.59 9.65 0.00 5.36
102 103 3.628646 ATGAACTCAGGCCGGGCAC 62.629 63.158 31.59 10.38 0.00 5.01
117 118 2.636768 GGCACCAGTAATTTGTCTGC 57.363 50.000 0.00 0.00 0.00 4.26
118 119 1.885887 GGCACCAGTAATTTGTCTGCA 59.114 47.619 0.00 0.00 0.00 4.41
119 120 2.493278 GGCACCAGTAATTTGTCTGCAT 59.507 45.455 0.00 0.00 0.00 3.96
120 121 3.504863 GCACCAGTAATTTGTCTGCATG 58.495 45.455 0.00 0.00 0.00 4.06
121 122 3.057315 GCACCAGTAATTTGTCTGCATGT 60.057 43.478 0.00 0.00 0.00 3.21
122 123 4.559300 GCACCAGTAATTTGTCTGCATGTT 60.559 41.667 0.00 0.00 0.00 2.71
123 124 5.335583 GCACCAGTAATTTGTCTGCATGTTA 60.336 40.000 0.00 0.00 0.00 2.41
124 125 6.086222 CACCAGTAATTTGTCTGCATGTTAC 58.914 40.000 0.00 0.00 0.00 2.50
125 126 5.183140 ACCAGTAATTTGTCTGCATGTTACC 59.817 40.000 0.00 0.00 31.15 2.85
126 127 5.393027 CCAGTAATTTGTCTGCATGTTACCC 60.393 44.000 0.00 0.00 31.15 3.69
127 128 3.848272 AATTTGTCTGCATGTTACCCG 57.152 42.857 0.00 0.00 0.00 5.28
128 129 1.529226 TTTGTCTGCATGTTACCCGG 58.471 50.000 0.00 0.00 0.00 5.73
129 130 0.398696 TTGTCTGCATGTTACCCGGT 59.601 50.000 0.00 0.00 0.00 5.28
130 131 1.268066 TGTCTGCATGTTACCCGGTA 58.732 50.000 0.00 0.00 0.00 4.02
131 132 1.066716 TGTCTGCATGTTACCCGGTAC 60.067 52.381 0.00 0.00 0.00 3.34
132 133 1.206371 GTCTGCATGTTACCCGGTACT 59.794 52.381 0.00 0.00 0.00 2.73
133 134 1.479323 TCTGCATGTTACCCGGTACTC 59.521 52.381 0.00 0.00 0.00 2.59
134 135 0.173935 TGCATGTTACCCGGTACTCG 59.826 55.000 0.00 0.00 38.88 4.18
135 136 1.149964 GCATGTTACCCGGTACTCGC 61.150 60.000 0.00 0.00 37.59 5.03
136 137 0.458669 CATGTTACCCGGTACTCGCT 59.541 55.000 0.00 0.00 37.59 4.93
137 138 0.458669 ATGTTACCCGGTACTCGCTG 59.541 55.000 0.00 0.00 37.59 5.18
138 139 0.608856 TGTTACCCGGTACTCGCTGA 60.609 55.000 0.00 0.00 37.59 4.26
139 140 0.743097 GTTACCCGGTACTCGCTGAT 59.257 55.000 0.00 0.00 37.59 2.90
140 141 1.949525 GTTACCCGGTACTCGCTGATA 59.050 52.381 0.00 0.00 37.59 2.15
141 142 2.555757 GTTACCCGGTACTCGCTGATAT 59.444 50.000 0.00 0.00 37.59 1.63
142 143 1.245732 ACCCGGTACTCGCTGATATC 58.754 55.000 0.00 0.00 37.59 1.63
143 144 1.244816 CCCGGTACTCGCTGATATCA 58.755 55.000 5.07 5.07 37.59 2.15
144 145 1.611977 CCCGGTACTCGCTGATATCAA 59.388 52.381 6.90 0.00 37.59 2.57
145 146 2.351835 CCCGGTACTCGCTGATATCAAG 60.352 54.545 6.90 4.16 37.59 3.02
146 147 2.351835 CCGGTACTCGCTGATATCAAGG 60.352 54.545 6.90 1.73 37.59 3.61
147 148 2.552743 CGGTACTCGCTGATATCAAGGA 59.447 50.000 6.90 6.09 0.00 3.36
148 149 3.365465 CGGTACTCGCTGATATCAAGGAG 60.365 52.174 22.12 22.12 33.81 3.69
149 150 3.057174 GGTACTCGCTGATATCAAGGAGG 60.057 52.174 25.12 9.96 32.64 4.30
150 151 2.950781 ACTCGCTGATATCAAGGAGGA 58.049 47.619 25.12 11.58 32.64 3.71
151 152 2.890311 ACTCGCTGATATCAAGGAGGAG 59.110 50.000 25.12 19.00 32.64 3.69
152 153 1.615883 TCGCTGATATCAAGGAGGAGC 59.384 52.381 6.90 3.96 0.00 4.70
153 154 1.617850 CGCTGATATCAAGGAGGAGCT 59.382 52.381 6.90 0.00 0.00 4.09
154 155 2.352617 CGCTGATATCAAGGAGGAGCTC 60.353 54.545 4.71 4.71 0.00 4.09
155 156 2.352617 GCTGATATCAAGGAGGAGCTCG 60.353 54.545 7.83 0.00 0.00 5.03
156 157 2.230992 CTGATATCAAGGAGGAGCTCGG 59.769 54.545 7.83 0.00 0.00 4.63
157 158 2.158460 TGATATCAAGGAGGAGCTCGGA 60.158 50.000 7.83 0.00 0.00 4.55
158 159 2.454336 TATCAAGGAGGAGCTCGGAA 57.546 50.000 7.83 0.00 0.00 4.30
159 160 1.573108 ATCAAGGAGGAGCTCGGAAA 58.427 50.000 7.83 0.00 0.00 3.13
160 161 1.348064 TCAAGGAGGAGCTCGGAAAA 58.652 50.000 7.83 0.00 0.00 2.29
161 162 1.909302 TCAAGGAGGAGCTCGGAAAAT 59.091 47.619 7.83 0.00 0.00 1.82
162 163 2.305927 TCAAGGAGGAGCTCGGAAAATT 59.694 45.455 7.83 0.00 0.00 1.82
163 164 3.084786 CAAGGAGGAGCTCGGAAAATTT 58.915 45.455 7.83 0.00 0.00 1.82
164 165 2.716217 AGGAGGAGCTCGGAAAATTTG 58.284 47.619 7.83 0.00 0.00 2.32
165 166 2.305927 AGGAGGAGCTCGGAAAATTTGA 59.694 45.455 7.83 0.00 0.00 2.69
166 167 3.054065 AGGAGGAGCTCGGAAAATTTGAT 60.054 43.478 7.83 0.00 0.00 2.57
167 168 4.164221 AGGAGGAGCTCGGAAAATTTGATA 59.836 41.667 7.83 0.00 0.00 2.15
168 169 4.273724 GGAGGAGCTCGGAAAATTTGATAC 59.726 45.833 7.83 0.00 0.00 2.24
169 170 4.200092 AGGAGCTCGGAAAATTTGATACC 58.800 43.478 7.83 0.00 0.00 2.73
170 171 3.002348 GGAGCTCGGAAAATTTGATACCG 59.998 47.826 7.83 15.35 44.09 4.02
171 172 2.354821 AGCTCGGAAAATTTGATACCGC 59.645 45.455 16.16 6.18 42.73 5.68
172 173 2.354821 GCTCGGAAAATTTGATACCGCT 59.645 45.455 16.16 0.00 42.73 5.52
173 174 3.546218 GCTCGGAAAATTTGATACCGCTC 60.546 47.826 16.16 9.67 42.73 5.03
174 175 3.601435 TCGGAAAATTTGATACCGCTCA 58.399 40.909 16.16 3.39 42.73 4.26
175 176 3.621268 TCGGAAAATTTGATACCGCTCAG 59.379 43.478 16.16 0.65 42.73 3.35
186 187 2.621763 CCGCTCAGGTCCAATATGC 58.378 57.895 0.00 0.00 34.51 3.14
187 188 0.886490 CCGCTCAGGTCCAATATGCC 60.886 60.000 0.00 0.00 34.51 4.40
188 189 0.179048 CGCTCAGGTCCAATATGCCA 60.179 55.000 0.00 0.00 0.00 4.92
189 190 1.602311 GCTCAGGTCCAATATGCCAG 58.398 55.000 0.00 0.00 0.00 4.85
190 191 1.602311 CTCAGGTCCAATATGCCAGC 58.398 55.000 0.00 0.00 0.00 4.85
191 192 0.918258 TCAGGTCCAATATGCCAGCA 59.082 50.000 0.00 0.00 0.00 4.41
192 193 1.284491 TCAGGTCCAATATGCCAGCAA 59.716 47.619 0.00 0.00 0.00 3.91
193 194 1.679680 CAGGTCCAATATGCCAGCAAG 59.320 52.381 0.00 0.00 0.00 4.01
194 195 1.565759 AGGTCCAATATGCCAGCAAGA 59.434 47.619 0.00 0.00 0.00 3.02
195 196 2.025037 AGGTCCAATATGCCAGCAAGAA 60.025 45.455 0.00 0.00 0.00 2.52
196 197 2.961062 GGTCCAATATGCCAGCAAGAAT 59.039 45.455 0.00 0.00 0.00 2.40
197 198 3.005155 GGTCCAATATGCCAGCAAGAATC 59.995 47.826 0.00 0.00 0.00 2.52
198 199 3.633525 GTCCAATATGCCAGCAAGAATCA 59.366 43.478 0.00 0.00 0.00 2.57
199 200 4.098349 GTCCAATATGCCAGCAAGAATCAA 59.902 41.667 0.00 0.00 0.00 2.57
200 201 4.710865 TCCAATATGCCAGCAAGAATCAAA 59.289 37.500 0.00 0.00 0.00 2.69
201 202 5.187381 TCCAATATGCCAGCAAGAATCAAAA 59.813 36.000 0.00 0.00 0.00 2.44
202 203 5.292589 CCAATATGCCAGCAAGAATCAAAAC 59.707 40.000 0.00 0.00 0.00 2.43
203 204 5.664294 ATATGCCAGCAAGAATCAAAACA 57.336 34.783 0.00 0.00 0.00 2.83
204 205 3.815856 TGCCAGCAAGAATCAAAACAA 57.184 38.095 0.00 0.00 0.00 2.83
205 206 4.134379 TGCCAGCAAGAATCAAAACAAA 57.866 36.364 0.00 0.00 0.00 2.83
206 207 4.121317 TGCCAGCAAGAATCAAAACAAAG 58.879 39.130 0.00 0.00 0.00 2.77
207 208 4.122046 GCCAGCAAGAATCAAAACAAAGT 58.878 39.130 0.00 0.00 0.00 2.66
208 209 4.025480 GCCAGCAAGAATCAAAACAAAGTG 60.025 41.667 0.00 0.00 0.00 3.16
209 210 4.508861 CCAGCAAGAATCAAAACAAAGTGG 59.491 41.667 0.00 0.00 0.00 4.00
210 211 4.025480 CAGCAAGAATCAAAACAAAGTGGC 60.025 41.667 0.00 0.00 0.00 5.01
211 212 4.122046 GCAAGAATCAAAACAAAGTGGCT 58.878 39.130 0.00 0.00 0.00 4.75
212 213 4.209911 GCAAGAATCAAAACAAAGTGGCTC 59.790 41.667 0.00 0.00 0.00 4.70
213 214 5.350633 CAAGAATCAAAACAAAGTGGCTCA 58.649 37.500 0.00 0.00 0.00 4.26
214 215 5.796424 AGAATCAAAACAAAGTGGCTCAT 57.204 34.783 0.00 0.00 0.00 2.90
215 216 5.776744 AGAATCAAAACAAAGTGGCTCATC 58.223 37.500 0.00 0.00 0.00 2.92
216 217 5.537674 AGAATCAAAACAAAGTGGCTCATCT 59.462 36.000 0.00 0.00 0.00 2.90
217 218 6.716628 AGAATCAAAACAAAGTGGCTCATCTA 59.283 34.615 0.00 0.00 0.00 1.98
218 219 5.689383 TCAAAACAAAGTGGCTCATCTAC 57.311 39.130 0.00 0.00 0.00 2.59
219 220 5.376625 TCAAAACAAAGTGGCTCATCTACT 58.623 37.500 0.00 0.00 38.22 2.57
220 221 6.530120 TCAAAACAAAGTGGCTCATCTACTA 58.470 36.000 0.00 0.00 35.26 1.82
221 222 6.650807 TCAAAACAAAGTGGCTCATCTACTAG 59.349 38.462 0.00 0.00 35.26 2.57
222 223 4.130286 ACAAAGTGGCTCATCTACTAGC 57.870 45.455 0.00 0.00 35.26 3.42
223 224 3.119291 CAAAGTGGCTCATCTACTAGCG 58.881 50.000 0.00 0.00 39.71 4.26
224 225 1.323412 AGTGGCTCATCTACTAGCGG 58.677 55.000 0.00 0.00 39.71 5.52
225 226 0.319125 GTGGCTCATCTACTAGCGGC 60.319 60.000 0.00 0.00 39.71 6.53
226 227 1.290639 GGCTCATCTACTAGCGGCC 59.709 63.158 0.00 0.00 39.71 6.13
227 228 1.290639 GCTCATCTACTAGCGGCCC 59.709 63.158 0.00 0.00 0.00 5.80
228 229 1.581954 CTCATCTACTAGCGGCCCG 59.418 63.158 0.00 0.00 0.00 6.13
229 230 1.152819 TCATCTACTAGCGGCCCGT 60.153 57.895 4.45 0.00 0.00 5.28
230 231 1.007271 CATCTACTAGCGGCCCGTG 60.007 63.158 4.45 0.00 0.00 4.94
231 232 2.857744 ATCTACTAGCGGCCCGTGC 61.858 63.158 4.45 0.00 0.00 5.34
241 242 2.650778 GCCCGTGCCAGGAAAAAG 59.349 61.111 0.00 0.00 0.00 2.27
242 243 2.931068 GCCCGTGCCAGGAAAAAGG 61.931 63.158 0.00 0.00 0.00 3.11
243 244 1.228429 CCCGTGCCAGGAAAAAGGA 60.228 57.895 0.00 0.00 0.00 3.36
244 245 1.244019 CCCGTGCCAGGAAAAAGGAG 61.244 60.000 0.00 0.00 0.00 3.69
245 246 1.244019 CCGTGCCAGGAAAAAGGAGG 61.244 60.000 0.00 0.00 0.00 4.30
246 247 0.250727 CGTGCCAGGAAAAAGGAGGA 60.251 55.000 0.00 0.00 0.00 3.71
247 248 1.539157 GTGCCAGGAAAAAGGAGGAG 58.461 55.000 0.00 0.00 0.00 3.69
248 249 1.073923 GTGCCAGGAAAAAGGAGGAGA 59.926 52.381 0.00 0.00 0.00 3.71
249 250 1.995542 TGCCAGGAAAAAGGAGGAGAT 59.004 47.619 0.00 0.00 0.00 2.75
250 251 2.291153 TGCCAGGAAAAAGGAGGAGATG 60.291 50.000 0.00 0.00 0.00 2.90
251 252 2.291217 GCCAGGAAAAAGGAGGAGATGT 60.291 50.000 0.00 0.00 0.00 3.06
252 253 3.054361 GCCAGGAAAAAGGAGGAGATGTA 60.054 47.826 0.00 0.00 0.00 2.29
253 254 4.385754 GCCAGGAAAAAGGAGGAGATGTAT 60.386 45.833 0.00 0.00 0.00 2.29
254 255 5.163195 GCCAGGAAAAAGGAGGAGATGTATA 60.163 44.000 0.00 0.00 0.00 1.47
255 256 6.466470 GCCAGGAAAAAGGAGGAGATGTATAT 60.466 42.308 0.00 0.00 0.00 0.86
256 257 6.939163 CCAGGAAAAAGGAGGAGATGTATATG 59.061 42.308 0.00 0.00 0.00 1.78
257 258 6.939163 CAGGAAAAAGGAGGAGATGTATATGG 59.061 42.308 0.00 0.00 0.00 2.74
258 259 6.621514 AGGAAAAAGGAGGAGATGTATATGGT 59.378 38.462 0.00 0.00 0.00 3.55
259 260 6.712547 GGAAAAAGGAGGAGATGTATATGGTG 59.287 42.308 0.00 0.00 0.00 4.17
260 261 5.832539 AAAGGAGGAGATGTATATGGTGG 57.167 43.478 0.00 0.00 0.00 4.61
261 262 3.177228 AGGAGGAGATGTATATGGTGGC 58.823 50.000 0.00 0.00 0.00 5.01
262 263 2.093973 GGAGGAGATGTATATGGTGGCG 60.094 54.545 0.00 0.00 0.00 5.69
263 264 2.826128 GAGGAGATGTATATGGTGGCGA 59.174 50.000 0.00 0.00 0.00 5.54
264 265 2.828520 AGGAGATGTATATGGTGGCGAG 59.171 50.000 0.00 0.00 0.00 5.03
265 266 2.563179 GGAGATGTATATGGTGGCGAGT 59.437 50.000 0.00 0.00 0.00 4.18
266 267 3.579709 GAGATGTATATGGTGGCGAGTG 58.420 50.000 0.00 0.00 0.00 3.51
267 268 2.965831 AGATGTATATGGTGGCGAGTGT 59.034 45.455 0.00 0.00 0.00 3.55
268 269 2.882927 TGTATATGGTGGCGAGTGTC 57.117 50.000 0.00 0.00 0.00 3.67
269 270 1.411246 TGTATATGGTGGCGAGTGTCC 59.589 52.381 0.00 0.00 0.00 4.02
270 271 1.045407 TATATGGTGGCGAGTGTCCC 58.955 55.000 0.00 0.00 0.00 4.46
271 272 2.028125 ATATGGTGGCGAGTGTCCCG 62.028 60.000 0.00 0.00 0.00 5.14
274 275 3.771160 GTGGCGAGTGTCCCGGAT 61.771 66.667 0.73 0.00 0.00 4.18
275 276 3.770040 TGGCGAGTGTCCCGGATG 61.770 66.667 0.73 0.00 0.00 3.51
276 277 3.458163 GGCGAGTGTCCCGGATGA 61.458 66.667 0.73 0.00 0.00 2.92
277 278 2.797278 GGCGAGTGTCCCGGATGAT 61.797 63.158 0.73 0.00 0.00 2.45
278 279 1.144057 GCGAGTGTCCCGGATGATT 59.856 57.895 0.73 0.00 0.00 2.57
279 280 0.462047 GCGAGTGTCCCGGATGATTT 60.462 55.000 0.73 0.00 0.00 2.17
280 281 1.290203 CGAGTGTCCCGGATGATTTG 58.710 55.000 0.73 0.00 0.00 2.32
281 282 1.134818 CGAGTGTCCCGGATGATTTGA 60.135 52.381 0.73 0.00 0.00 2.69
282 283 2.676750 CGAGTGTCCCGGATGATTTGAA 60.677 50.000 0.73 0.00 0.00 2.69
283 284 2.678336 GAGTGTCCCGGATGATTTGAAC 59.322 50.000 0.73 0.00 0.00 3.18
284 285 1.396996 GTGTCCCGGATGATTTGAACG 59.603 52.381 0.73 0.00 0.00 3.95
285 286 0.377203 GTCCCGGATGATTTGAACGC 59.623 55.000 0.73 0.00 0.00 4.84
286 287 0.035915 TCCCGGATGATTTGAACGCA 60.036 50.000 0.73 0.00 0.00 5.24
287 288 0.378257 CCCGGATGATTTGAACGCAG 59.622 55.000 0.73 0.00 0.00 5.18
288 289 0.248215 CCGGATGATTTGAACGCAGC 60.248 55.000 0.00 0.00 0.00 5.25
289 290 0.587242 CGGATGATTTGAACGCAGCG 60.587 55.000 14.82 14.82 0.00 5.18
290 291 0.863119 GGATGATTTGAACGCAGCGC 60.863 55.000 16.61 0.00 0.00 5.92
291 292 0.097674 GATGATTTGAACGCAGCGCT 59.902 50.000 16.61 2.64 0.00 5.92
292 293 1.327460 GATGATTTGAACGCAGCGCTA 59.673 47.619 16.61 0.00 0.00 4.26
293 294 0.721154 TGATTTGAACGCAGCGCTAG 59.279 50.000 16.61 10.44 0.00 3.42
294 295 0.587489 GATTTGAACGCAGCGCTAGC 60.587 55.000 16.61 15.71 45.58 3.42
305 306 4.914420 CGCTAGCTGCCGACCTCG 62.914 72.222 13.93 0.00 38.78 4.63
306 307 3.827898 GCTAGCTGCCGACCTCGT 61.828 66.667 7.70 0.00 37.74 4.18
307 308 2.103143 CTAGCTGCCGACCTCGTG 59.897 66.667 0.00 0.00 37.74 4.35
308 309 2.675423 TAGCTGCCGACCTCGTGT 60.675 61.111 0.00 0.00 37.74 4.49
309 310 2.214181 CTAGCTGCCGACCTCGTGTT 62.214 60.000 0.00 0.00 37.74 3.32
310 311 2.486636 TAGCTGCCGACCTCGTGTTG 62.487 60.000 0.00 0.00 37.74 3.33
314 315 2.738521 CCGACCTCGTGTTGGCTG 60.739 66.667 1.95 0.00 41.70 4.85
315 316 2.338620 CGACCTCGTGTTGGCTGA 59.661 61.111 0.00 0.00 34.11 4.26
316 317 1.300620 CGACCTCGTGTTGGCTGAA 60.301 57.895 0.00 0.00 34.11 3.02
317 318 1.284982 CGACCTCGTGTTGGCTGAAG 61.285 60.000 0.00 0.00 34.11 3.02
318 319 0.033504 GACCTCGTGTTGGCTGAAGA 59.966 55.000 0.00 0.00 0.00 2.87
319 320 0.034059 ACCTCGTGTTGGCTGAAGAG 59.966 55.000 0.00 0.00 0.00 2.85
320 321 0.034059 CCTCGTGTTGGCTGAAGAGT 59.966 55.000 0.00 0.00 0.00 3.24
321 322 1.272490 CCTCGTGTTGGCTGAAGAGTA 59.728 52.381 0.00 0.00 0.00 2.59
322 323 2.600731 CTCGTGTTGGCTGAAGAGTAG 58.399 52.381 0.00 0.00 0.00 2.57
323 324 1.071605 CGTGTTGGCTGAAGAGTAGC 58.928 55.000 0.00 0.00 40.41 3.58
324 325 1.337260 CGTGTTGGCTGAAGAGTAGCT 60.337 52.381 0.00 0.00 40.92 3.32
325 326 2.772287 GTGTTGGCTGAAGAGTAGCTT 58.228 47.619 0.00 0.00 40.92 3.74
326 327 3.142174 GTGTTGGCTGAAGAGTAGCTTT 58.858 45.455 0.00 0.00 40.92 3.51
327 328 3.565902 GTGTTGGCTGAAGAGTAGCTTTT 59.434 43.478 0.00 0.00 40.92 2.27
328 329 3.565482 TGTTGGCTGAAGAGTAGCTTTTG 59.435 43.478 0.00 0.00 40.92 2.44
329 330 3.492102 TGGCTGAAGAGTAGCTTTTGT 57.508 42.857 0.00 0.00 40.92 2.83
330 331 4.617253 TGGCTGAAGAGTAGCTTTTGTA 57.383 40.909 0.00 0.00 40.92 2.41
331 332 4.315803 TGGCTGAAGAGTAGCTTTTGTAC 58.684 43.478 0.00 0.00 40.92 2.90
332 333 4.040461 TGGCTGAAGAGTAGCTTTTGTACT 59.960 41.667 0.00 0.00 40.92 2.73
333 334 4.627900 GGCTGAAGAGTAGCTTTTGTACTC 59.372 45.833 5.58 5.58 44.65 2.59
340 341 5.795972 GAGTAGCTTTTGTACTCTTTCCCT 58.204 41.667 6.37 0.00 42.15 4.20
341 342 6.930068 AGTAGCTTTTGTACTCTTTCCCTA 57.070 37.500 0.00 0.00 0.00 3.53
342 343 7.312415 AGTAGCTTTTGTACTCTTTCCCTAA 57.688 36.000 0.00 0.00 0.00 2.69
343 344 7.387643 AGTAGCTTTTGTACTCTTTCCCTAAG 58.612 38.462 0.00 0.00 35.04 2.18
344 345 6.435292 AGCTTTTGTACTCTTTCCCTAAGA 57.565 37.500 0.00 0.00 40.57 2.10
345 346 6.838382 AGCTTTTGTACTCTTTCCCTAAGAA 58.162 36.000 0.00 0.00 42.19 2.52
346 347 7.287810 AGCTTTTGTACTCTTTCCCTAAGAAA 58.712 34.615 0.00 0.00 42.19 2.52
347 348 7.778382 AGCTTTTGTACTCTTTCCCTAAGAAAA 59.222 33.333 0.00 0.00 43.84 2.29
348 349 8.410912 GCTTTTGTACTCTTTCCCTAAGAAAAA 58.589 33.333 0.00 0.00 43.84 1.94
376 377 9.159364 ACGTCCTACTTAAGAAAAATGAATACC 57.841 33.333 10.09 0.00 0.00 2.73
377 378 9.158233 CGTCCTACTTAAGAAAAATGAATACCA 57.842 33.333 10.09 0.00 0.00 3.25
380 381 9.736023 CCTACTTAAGAAAAATGAATACCATGC 57.264 33.333 10.09 0.00 35.24 4.06
381 382 9.438291 CTACTTAAGAAAAATGAATACCATGCG 57.562 33.333 10.09 0.00 35.24 4.73
382 383 8.050778 ACTTAAGAAAAATGAATACCATGCGA 57.949 30.769 10.09 0.00 35.24 5.10
383 384 8.686334 ACTTAAGAAAAATGAATACCATGCGAT 58.314 29.630 10.09 0.00 35.24 4.58
385 386 9.944663 TTAAGAAAAATGAATACCATGCGATAC 57.055 29.630 0.00 0.00 35.24 2.24
386 387 7.807977 AGAAAAATGAATACCATGCGATACT 57.192 32.000 0.00 0.00 35.24 2.12
387 388 8.225603 AGAAAAATGAATACCATGCGATACTT 57.774 30.769 0.00 0.00 35.24 2.24
388 389 8.131100 AGAAAAATGAATACCATGCGATACTTG 58.869 33.333 0.00 0.00 35.24 3.16
389 390 5.947228 AATGAATACCATGCGATACTTGG 57.053 39.130 0.00 0.00 46.67 3.61
396 397 3.738982 CCATGCGATACTTGGTAATGGA 58.261 45.455 0.00 0.00 38.50 3.41
397 398 3.498397 CCATGCGATACTTGGTAATGGAC 59.502 47.826 0.00 0.00 38.50 4.02
398 399 3.897141 TGCGATACTTGGTAATGGACA 57.103 42.857 0.00 0.00 0.00 4.02
399 400 3.792401 TGCGATACTTGGTAATGGACAG 58.208 45.455 0.00 0.00 0.00 3.51
400 401 3.449377 TGCGATACTTGGTAATGGACAGA 59.551 43.478 0.00 0.00 0.00 3.41
401 402 3.802685 GCGATACTTGGTAATGGACAGAC 59.197 47.826 0.00 0.00 0.00 3.51
402 403 4.042398 CGATACTTGGTAATGGACAGACG 58.958 47.826 0.00 0.00 0.00 4.18
403 404 2.094762 ACTTGGTAATGGACAGACGC 57.905 50.000 0.00 0.00 0.00 5.19
404 405 1.338769 ACTTGGTAATGGACAGACGCC 60.339 52.381 0.00 0.00 0.00 5.68
405 406 0.981183 TTGGTAATGGACAGACGCCT 59.019 50.000 0.00 0.00 0.00 5.52
406 407 1.855295 TGGTAATGGACAGACGCCTA 58.145 50.000 0.00 0.00 0.00 3.93
407 408 2.394632 TGGTAATGGACAGACGCCTAT 58.605 47.619 0.00 0.00 0.00 2.57
408 409 2.769663 TGGTAATGGACAGACGCCTATT 59.230 45.455 0.00 0.00 0.00 1.73
409 410 3.199071 TGGTAATGGACAGACGCCTATTT 59.801 43.478 0.00 0.00 0.00 1.40
410 411 4.406326 TGGTAATGGACAGACGCCTATTTA 59.594 41.667 0.00 0.00 0.00 1.40
411 412 5.071250 TGGTAATGGACAGACGCCTATTTAT 59.929 40.000 0.00 0.00 0.00 1.40
412 413 6.268158 TGGTAATGGACAGACGCCTATTTATA 59.732 38.462 0.00 0.00 0.00 0.98
413 414 7.156673 GGTAATGGACAGACGCCTATTTATAA 58.843 38.462 0.00 0.00 0.00 0.98
414 415 7.822822 GGTAATGGACAGACGCCTATTTATAAT 59.177 37.037 0.00 0.00 0.00 1.28
415 416 9.865321 GTAATGGACAGACGCCTATTTATAATA 57.135 33.333 0.00 0.00 0.00 0.98
492 493 3.520290 TTGCACAGTATAGGTTCTCGG 57.480 47.619 0.00 0.00 0.00 4.63
628 630 2.477754 GCAAAAACATGCAGAAAGGAGC 59.522 45.455 0.00 0.00 45.70 4.70
641 645 3.763897 AGAAAGGAGCGCACCAAATAAAT 59.236 39.130 26.04 0.00 0.00 1.40
645 649 3.119495 AGGAGCGCACCAAATAAATCAAC 60.119 43.478 26.04 0.00 0.00 3.18
661 665 1.950909 TCAACCCGAACGAGCATTTTT 59.049 42.857 0.00 0.00 0.00 1.94
662 666 2.031508 TCAACCCGAACGAGCATTTTTC 60.032 45.455 0.00 0.00 0.00 2.29
697 702 2.145958 CATTGACCTCGATCGATGCT 57.854 50.000 19.78 6.72 34.46 3.79
820 844 4.020617 CCCTCGCAGCAACCTCCA 62.021 66.667 0.00 0.00 0.00 3.86
851 875 1.307430 GAGCTCCCTCCCTCCCTTT 60.307 63.158 0.87 0.00 31.68 3.11
910 934 2.366570 GCTCTCCCCTCTCCACCT 59.633 66.667 0.00 0.00 0.00 4.00
950 974 1.513622 GTCGCCTTCACCTCTCCTC 59.486 63.158 0.00 0.00 0.00 3.71
951 975 1.076727 TCGCCTTCACCTCTCCTCA 59.923 57.895 0.00 0.00 0.00 3.86
952 976 0.324738 TCGCCTTCACCTCTCCTCAT 60.325 55.000 0.00 0.00 0.00 2.90
953 977 1.063942 TCGCCTTCACCTCTCCTCATA 60.064 52.381 0.00 0.00 0.00 2.15
954 978 1.339610 CGCCTTCACCTCTCCTCATAG 59.660 57.143 0.00 0.00 0.00 2.23
957 981 3.838565 CCTTCACCTCTCCTCATAGCTA 58.161 50.000 0.00 0.00 0.00 3.32
958 982 4.219115 CCTTCACCTCTCCTCATAGCTAA 58.781 47.826 0.00 0.00 0.00 3.09
1146 1182 0.911769 TCCTCATCACCACCATCACC 59.088 55.000 0.00 0.00 0.00 4.02
1376 1412 1.503818 GCGCGGAGGAACAAGAACAA 61.504 55.000 8.83 0.00 0.00 2.83
1653 1689 6.142320 CGTGGTTTTAATGTTCTTGCTCTTTC 59.858 38.462 0.00 0.00 0.00 2.62
1654 1690 7.203218 GTGGTTTTAATGTTCTTGCTCTTTCT 58.797 34.615 0.00 0.00 0.00 2.52
1660 1696 5.757850 ATGTTCTTGCTCTTTCTTCGTTT 57.242 34.783 0.00 0.00 0.00 3.60
1692 1728 8.923270 TCTCTTGTTTTAGAAAATTGGGATTGT 58.077 29.630 0.00 0.00 0.00 2.71
1721 1759 8.533569 AAGAAAAGTTCAGGTTAGGAATCAAA 57.466 30.769 0.00 0.00 0.00 2.69
1727 1765 9.807921 AAGTTCAGGTTAGGAATCAAATAGAAA 57.192 29.630 0.00 0.00 0.00 2.52
1802 1842 2.040278 TGGAAATGCAAGTCAGCCTAGT 59.960 45.455 0.00 0.00 0.00 2.57
1810 1850 3.868077 GCAAGTCAGCCTAGTATTCTGTG 59.132 47.826 0.00 0.00 0.00 3.66
1819 1859 4.302455 CCTAGTATTCTGTGCTGAATCCG 58.698 47.826 7.42 0.00 37.73 4.18
1826 1866 2.101415 TCTGTGCTGAATCCGGATACAG 59.899 50.000 27.65 27.65 37.05 2.74
1861 1901 2.263077 CCCGATCAGAAGTTCAGAACG 58.737 52.381 17.35 17.35 36.23 3.95
1882 1922 3.557595 CGTGTGCTCAAAGAGGGATTATC 59.442 47.826 0.00 0.00 0.00 1.75
1926 1969 7.038302 TGGGTGTAGAATTGTAGATCTCTGTTT 60.038 37.037 0.00 0.00 0.00 2.83
1933 1976 7.395489 AGAATTGTAGATCTCTGTTTGGCAAAT 59.605 33.333 16.74 0.00 0.00 2.32
1943 1986 5.856156 TCTGTTTGGCAAATGATCAATGTT 58.144 33.333 16.74 0.00 0.00 2.71
1990 2034 8.450578 TGAATATACTGAATCAAATGGTGGTC 57.549 34.615 0.00 0.00 0.00 4.02
1995 2039 4.520492 ACTGAATCAAATGGTGGTCTCAAC 59.480 41.667 0.00 0.00 0.00 3.18
2020 2064 3.964347 CGAAATGTAAATGCATGCTCTCG 59.036 43.478 20.33 9.33 0.00 4.04
2027 2071 2.034104 ATGCATGCTCTCGTTGTCAT 57.966 45.000 20.33 0.00 0.00 3.06
2028 2072 1.362768 TGCATGCTCTCGTTGTCATC 58.637 50.000 20.33 0.00 0.00 2.92
2029 2073 0.654683 GCATGCTCTCGTTGTCATCC 59.345 55.000 11.37 0.00 0.00 3.51
2080 2124 1.078848 AGAATCAGCGCTTTCGGCT 60.079 52.632 7.50 0.00 42.61 5.52
2088 2132 1.766143 GCGCTTTCGGCTGATTCGAT 61.766 55.000 0.00 0.00 39.13 3.59
2119 2166 5.203060 ACTTCCAGTGTCAGTTAGAACTC 57.797 43.478 0.00 0.00 37.08 3.01
2120 2167 4.649674 ACTTCCAGTGTCAGTTAGAACTCA 59.350 41.667 0.00 0.00 37.08 3.41
2132 2179 6.095580 TCAGTTAGAACTCAGAACAGCGATAT 59.904 38.462 0.00 0.00 37.08 1.63
2134 2181 6.975772 AGTTAGAACTCAGAACAGCGATATTC 59.024 38.462 0.00 0.00 32.86 1.75
2135 2182 5.330455 AGAACTCAGAACAGCGATATTCA 57.670 39.130 0.00 0.00 0.00 2.57
2136 2183 5.724328 AGAACTCAGAACAGCGATATTCAA 58.276 37.500 0.00 0.00 0.00 2.69
2137 2184 6.166279 AGAACTCAGAACAGCGATATTCAAA 58.834 36.000 0.00 0.00 0.00 2.69
2138 2185 5.786401 ACTCAGAACAGCGATATTCAAAC 57.214 39.130 0.00 0.00 0.00 2.93
2139 2186 5.482908 ACTCAGAACAGCGATATTCAAACT 58.517 37.500 0.00 0.00 0.00 2.66
2140 2187 5.578727 ACTCAGAACAGCGATATTCAAACTC 59.421 40.000 0.00 0.00 0.00 3.01
2144 2205 6.312426 CAGAACAGCGATATTCAAACTCTTCT 59.688 38.462 0.00 0.00 0.00 2.85
2180 2241 1.790635 TACAATTCCGGCAACCCCCA 61.791 55.000 0.00 0.00 0.00 4.96
2181 2242 2.037208 AATTCCGGCAACCCCCAG 59.963 61.111 0.00 0.00 0.00 4.45
2381 2450 3.958147 ATTCCAGGGCACGCGACTG 62.958 63.158 15.93 14.95 0.00 3.51
2422 2491 4.701956 ACAATGACCGTCCATTTGAATC 57.298 40.909 11.01 0.00 34.77 2.52
2425 2494 5.943416 ACAATGACCGTCCATTTGAATCTTA 59.057 36.000 11.01 0.00 34.77 2.10
2427 2496 5.873179 TGACCGTCCATTTGAATCTTAAC 57.127 39.130 0.00 0.00 0.00 2.01
2428 2497 5.556915 TGACCGTCCATTTGAATCTTAACT 58.443 37.500 0.00 0.00 0.00 2.24
2431 2500 7.013846 TGACCGTCCATTTGAATCTTAACTTTT 59.986 33.333 0.00 0.00 0.00 2.27
2469 2538 0.249405 CTGAGAATCTGGGAGCTCGC 60.249 60.000 23.06 23.06 34.92 5.03
2483 2552 1.604755 AGCTCGCTGAATCGTAGGTAG 59.395 52.381 0.00 0.00 0.00 3.18
2505 2576 5.821204 AGTAACTGCATTGTGTTCAGTTTC 58.179 37.500 11.37 7.34 45.55 2.78
2509 2580 6.639632 ACTGCATTGTGTTCAGTTTCTATT 57.360 33.333 0.00 0.00 37.78 1.73
2526 2597 4.226384 TCTATTGGCTGCTGGAGAGAATA 58.774 43.478 0.00 0.82 0.00 1.75
2552 2623 6.201806 AGAGAAGAAAGTGTCAGTTGATTTCG 59.798 38.462 0.00 0.00 35.53 3.46
2557 2628 4.452890 AGTGTCAGTTGATTTCGTTTCG 57.547 40.909 0.00 0.00 0.00 3.46
2590 2664 3.003897 TGAAACACGGCAGAAAATGGTAC 59.996 43.478 0.00 0.00 0.00 3.34
2591 2665 2.561478 ACACGGCAGAAAATGGTACT 57.439 45.000 0.00 0.00 0.00 2.73
2592 2666 2.423577 ACACGGCAGAAAATGGTACTC 58.576 47.619 0.00 0.00 0.00 2.59
2593 2667 1.737793 CACGGCAGAAAATGGTACTCC 59.262 52.381 0.00 0.00 0.00 3.85
2594 2668 1.628846 ACGGCAGAAAATGGTACTCCT 59.371 47.619 0.00 0.00 34.23 3.69
2595 2669 2.009774 CGGCAGAAAATGGTACTCCTG 58.990 52.381 0.00 0.00 34.23 3.86
2596 2670 2.615493 CGGCAGAAAATGGTACTCCTGT 60.615 50.000 0.00 0.00 34.23 4.00
2597 2671 3.369052 CGGCAGAAAATGGTACTCCTGTA 60.369 47.826 0.00 0.00 34.23 2.74
2598 2672 4.683400 CGGCAGAAAATGGTACTCCTGTAT 60.683 45.833 0.00 0.00 34.23 2.29
2599 2673 4.816925 GGCAGAAAATGGTACTCCTGTATC 59.183 45.833 0.00 0.00 34.23 2.24
2600 2674 5.428253 GCAGAAAATGGTACTCCTGTATCA 58.572 41.667 0.00 0.00 43.10 2.15
2601 2675 5.525378 GCAGAAAATGGTACTCCTGTATCAG 59.475 44.000 0.00 0.00 42.33 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.357279 GCCCAGCCAGAAGTGCCT 62.357 66.667 0.00 0.00 0.00 4.75
1 2 4.357279 AGCCCAGCCAGAAGTGCC 62.357 66.667 0.00 0.00 0.00 5.01
2 3 3.060615 CAGCCCAGCCAGAAGTGC 61.061 66.667 0.00 0.00 0.00 4.40
3 4 3.060615 GCAGCCCAGCCAGAAGTG 61.061 66.667 0.00 0.00 0.00 3.16
4 5 4.711949 CGCAGCCCAGCCAGAAGT 62.712 66.667 0.00 0.00 0.00 3.01
5 6 4.711949 ACGCAGCCCAGCCAGAAG 62.712 66.667 0.00 0.00 0.00 2.85
6 7 4.704833 GACGCAGCCCAGCCAGAA 62.705 66.667 0.00 0.00 0.00 3.02
12 13 4.320456 ACAGGTGACGCAGCCCAG 62.320 66.667 5.60 0.66 31.60 4.45
13 14 4.314440 GACAGGTGACGCAGCCCA 62.314 66.667 5.60 0.00 31.60 5.36
20 21 1.583495 TACAGAGCGGACAGGTGACG 61.583 60.000 0.00 0.00 0.00 4.35
21 22 0.818296 ATACAGAGCGGACAGGTGAC 59.182 55.000 0.00 0.00 0.00 3.67
22 23 2.092592 TCTATACAGAGCGGACAGGTGA 60.093 50.000 0.00 0.00 0.00 4.02
23 24 2.292016 CTCTATACAGAGCGGACAGGTG 59.708 54.545 0.00 0.00 41.91 4.00
24 25 2.577700 CTCTATACAGAGCGGACAGGT 58.422 52.381 0.00 0.00 41.91 4.00
25 26 1.883275 CCTCTATACAGAGCGGACAGG 59.117 57.143 0.00 0.00 46.08 4.00
26 27 1.268352 GCCTCTATACAGAGCGGACAG 59.732 57.143 0.00 0.00 46.08 3.51
27 28 1.319541 GCCTCTATACAGAGCGGACA 58.680 55.000 0.00 0.00 46.08 4.02
28 29 0.599060 GGCCTCTATACAGAGCGGAC 59.401 60.000 0.00 0.00 46.08 4.79
29 30 0.539901 GGGCCTCTATACAGAGCGGA 60.540 60.000 0.84 0.00 46.08 5.54
30 31 0.827925 TGGGCCTCTATACAGAGCGG 60.828 60.000 4.53 0.00 46.08 5.52
31 32 1.040646 TTGGGCCTCTATACAGAGCG 58.959 55.000 4.53 0.00 46.08 5.03
32 33 2.634940 TCATTGGGCCTCTATACAGAGC 59.365 50.000 4.53 0.00 46.08 4.09
33 34 5.243981 CAATCATTGGGCCTCTATACAGAG 58.756 45.833 4.53 0.00 46.85 3.35
34 35 4.505566 GCAATCATTGGGCCTCTATACAGA 60.506 45.833 4.53 0.00 0.00 3.41
35 36 3.755378 GCAATCATTGGGCCTCTATACAG 59.245 47.826 4.53 0.00 0.00 2.74
36 37 3.754965 GCAATCATTGGGCCTCTATACA 58.245 45.455 4.53 0.00 0.00 2.29
37 38 2.744202 CGCAATCATTGGGCCTCTATAC 59.256 50.000 4.53 0.00 36.79 1.47
38 39 2.637382 TCGCAATCATTGGGCCTCTATA 59.363 45.455 9.58 0.00 42.68 1.31
39 40 1.421268 TCGCAATCATTGGGCCTCTAT 59.579 47.619 9.58 0.00 42.68 1.98
40 41 0.836606 TCGCAATCATTGGGCCTCTA 59.163 50.000 9.58 0.00 42.68 2.43
41 42 0.034186 TTCGCAATCATTGGGCCTCT 60.034 50.000 9.58 0.00 42.68 3.69
42 43 0.817013 TTTCGCAATCATTGGGCCTC 59.183 50.000 9.58 0.00 42.68 4.70
43 44 1.066929 GTTTTCGCAATCATTGGGCCT 60.067 47.619 9.58 0.00 42.68 5.19
44 45 1.337635 TGTTTTCGCAATCATTGGGCC 60.338 47.619 9.58 0.00 42.68 5.80
45 46 1.994779 CTGTTTTCGCAATCATTGGGC 59.005 47.619 9.58 0.00 42.68 5.36
46 47 3.057315 AGTCTGTTTTCGCAATCATTGGG 60.057 43.478 8.14 8.14 44.15 4.12
47 48 3.916172 CAGTCTGTTTTCGCAATCATTGG 59.084 43.478 0.00 0.00 0.00 3.16
48 49 3.362831 GCAGTCTGTTTTCGCAATCATTG 59.637 43.478 0.93 0.00 0.00 2.82
49 50 3.004629 TGCAGTCTGTTTTCGCAATCATT 59.995 39.130 0.93 0.00 0.00 2.57
50 51 2.553602 TGCAGTCTGTTTTCGCAATCAT 59.446 40.909 0.93 0.00 0.00 2.45
51 52 1.946081 TGCAGTCTGTTTTCGCAATCA 59.054 42.857 0.93 0.00 0.00 2.57
52 53 2.686558 TGCAGTCTGTTTTCGCAATC 57.313 45.000 0.93 0.00 0.00 2.67
53 54 2.923605 GCATGCAGTCTGTTTTCGCAAT 60.924 45.455 14.21 0.00 35.98 3.56
54 55 1.600164 GCATGCAGTCTGTTTTCGCAA 60.600 47.619 14.21 0.00 35.98 4.85
55 56 0.040157 GCATGCAGTCTGTTTTCGCA 60.040 50.000 14.21 0.00 36.95 5.10
56 57 0.040157 TGCATGCAGTCTGTTTTCGC 60.040 50.000 18.46 0.00 0.00 4.70
57 58 1.002576 TGTGCATGCAGTCTGTTTTCG 60.003 47.619 23.41 0.00 0.00 3.46
58 59 2.780065 TGTGCATGCAGTCTGTTTTC 57.220 45.000 23.41 6.40 0.00 2.29
59 60 3.386486 CAATGTGCATGCAGTCTGTTTT 58.614 40.909 23.41 4.34 0.00 2.43
60 61 2.864882 GCAATGTGCATGCAGTCTGTTT 60.865 45.455 23.41 5.79 44.26 2.83
61 62 1.336517 GCAATGTGCATGCAGTCTGTT 60.337 47.619 23.41 8.77 44.26 3.16
62 63 0.242825 GCAATGTGCATGCAGTCTGT 59.757 50.000 23.41 1.70 44.26 3.41
63 64 0.796870 CGCAATGTGCATGCAGTCTG 60.797 55.000 23.41 18.35 45.36 3.51
64 65 0.956902 TCGCAATGTGCATGCAGTCT 60.957 50.000 23.41 5.62 45.36 3.24
65 66 0.109643 TTCGCAATGTGCATGCAGTC 60.110 50.000 23.41 11.34 45.36 3.51
66 67 0.528924 ATTCGCAATGTGCATGCAGT 59.471 45.000 23.41 10.45 45.36 4.40
67 68 0.920664 CATTCGCAATGTGCATGCAG 59.079 50.000 23.41 10.75 45.36 4.41
68 69 0.526662 TCATTCGCAATGTGCATGCA 59.473 45.000 18.46 18.46 45.36 3.96
69 70 1.322338 GTTCATTCGCAATGTGCATGC 59.678 47.619 11.82 11.82 45.36 4.06
70 71 2.850060 GAGTTCATTCGCAATGTGCATG 59.150 45.455 0.06 0.06 45.36 4.06
71 72 2.488937 TGAGTTCATTCGCAATGTGCAT 59.511 40.909 0.61 0.00 45.36 3.96
72 73 1.878734 TGAGTTCATTCGCAATGTGCA 59.121 42.857 0.61 0.00 45.36 4.57
73 74 2.512885 CTGAGTTCATTCGCAATGTGC 58.487 47.619 8.19 0.00 39.87 4.57
74 75 2.730090 GCCTGAGTTCATTCGCAATGTG 60.730 50.000 8.19 0.00 39.87 3.21
75 76 1.470098 GCCTGAGTTCATTCGCAATGT 59.530 47.619 8.19 0.00 39.87 2.71
76 77 1.202222 GGCCTGAGTTCATTCGCAATG 60.202 52.381 0.00 3.36 40.28 2.82
77 78 1.098050 GGCCTGAGTTCATTCGCAAT 58.902 50.000 0.00 0.00 0.00 3.56
78 79 1.298157 CGGCCTGAGTTCATTCGCAA 61.298 55.000 0.00 0.00 0.00 4.85
79 80 1.741401 CGGCCTGAGTTCATTCGCA 60.741 57.895 0.00 0.00 0.00 5.10
80 81 2.464459 CCGGCCTGAGTTCATTCGC 61.464 63.158 0.00 0.00 0.00 4.70
81 82 1.815421 CCCGGCCTGAGTTCATTCG 60.815 63.158 0.00 0.00 0.00 3.34
82 83 2.115291 GCCCGGCCTGAGTTCATTC 61.115 63.158 0.00 0.00 0.00 2.67
83 84 2.044946 GCCCGGCCTGAGTTCATT 60.045 61.111 0.00 0.00 0.00 2.57
84 85 3.329889 TGCCCGGCCTGAGTTCAT 61.330 61.111 7.03 0.00 0.00 2.57
85 86 4.329545 GTGCCCGGCCTGAGTTCA 62.330 66.667 7.03 0.00 0.00 3.18
91 92 2.837031 AATTACTGGTGCCCGGCCTG 62.837 60.000 7.03 0.00 32.02 4.85
92 93 2.150014 AAATTACTGGTGCCCGGCCT 62.150 55.000 7.03 0.00 32.02 5.19
93 94 1.680989 AAATTACTGGTGCCCGGCC 60.681 57.895 7.03 0.00 32.02 6.13
94 95 1.248101 ACAAATTACTGGTGCCCGGC 61.248 55.000 1.04 1.04 32.02 6.13
95 96 0.808755 GACAAATTACTGGTGCCCGG 59.191 55.000 0.00 0.00 35.68 5.73
96 97 1.468520 CAGACAAATTACTGGTGCCCG 59.531 52.381 0.00 0.00 0.00 6.13
97 98 1.202348 GCAGACAAATTACTGGTGCCC 59.798 52.381 0.00 0.00 35.05 5.36
98 99 1.885887 TGCAGACAAATTACTGGTGCC 59.114 47.619 0.00 0.00 35.05 5.01
99 100 3.057315 ACATGCAGACAAATTACTGGTGC 60.057 43.478 0.00 5.15 35.05 5.01
100 101 4.771590 ACATGCAGACAAATTACTGGTG 57.228 40.909 0.00 0.00 35.05 4.17
101 102 5.183140 GGTAACATGCAGACAAATTACTGGT 59.817 40.000 0.00 0.00 33.67 4.00
102 103 5.393027 GGGTAACATGCAGACAAATTACTGG 60.393 44.000 0.00 0.00 33.67 4.00
103 104 5.640732 GGGTAACATGCAGACAAATTACTG 58.359 41.667 0.00 0.00 33.67 2.74
104 105 4.394920 CGGGTAACATGCAGACAAATTACT 59.605 41.667 0.00 0.00 33.67 2.24
105 106 4.438200 CCGGGTAACATGCAGACAAATTAC 60.438 45.833 0.00 0.00 39.74 1.89
106 107 3.692101 CCGGGTAACATGCAGACAAATTA 59.308 43.478 0.00 0.00 39.74 1.40
107 108 2.491693 CCGGGTAACATGCAGACAAATT 59.508 45.455 0.00 0.00 39.74 1.82
108 109 2.091541 CCGGGTAACATGCAGACAAAT 58.908 47.619 0.00 0.00 39.74 2.32
109 110 1.202830 ACCGGGTAACATGCAGACAAA 60.203 47.619 6.32 0.00 39.74 2.83
110 111 0.398696 ACCGGGTAACATGCAGACAA 59.601 50.000 6.32 0.00 39.74 3.18
111 112 1.066716 GTACCGGGTAACATGCAGACA 60.067 52.381 8.81 0.00 39.74 3.41
112 113 1.206371 AGTACCGGGTAACATGCAGAC 59.794 52.381 8.81 0.00 39.74 3.51
113 114 1.479323 GAGTACCGGGTAACATGCAGA 59.521 52.381 8.81 0.00 39.74 4.26
114 115 1.801395 CGAGTACCGGGTAACATGCAG 60.801 57.143 8.81 0.00 39.74 4.41
115 116 0.173935 CGAGTACCGGGTAACATGCA 59.826 55.000 8.81 0.00 39.74 3.96
116 117 1.149964 GCGAGTACCGGGTAACATGC 61.150 60.000 8.81 7.28 39.04 4.06
117 118 0.458669 AGCGAGTACCGGGTAACATG 59.541 55.000 8.81 0.78 39.04 3.21
118 119 0.458669 CAGCGAGTACCGGGTAACAT 59.541 55.000 8.81 0.00 39.04 2.71
119 120 0.608856 TCAGCGAGTACCGGGTAACA 60.609 55.000 8.81 0.00 39.04 2.41
120 121 0.743097 ATCAGCGAGTACCGGGTAAC 59.257 55.000 8.81 5.59 39.04 2.50
121 122 2.346766 TATCAGCGAGTACCGGGTAA 57.653 50.000 8.81 0.00 39.04 2.85
122 123 2.224597 TGATATCAGCGAGTACCGGGTA 60.225 50.000 6.32 1.88 39.04 3.69
123 124 1.245732 GATATCAGCGAGTACCGGGT 58.754 55.000 6.32 4.46 39.04 5.28
124 125 1.244816 TGATATCAGCGAGTACCGGG 58.755 55.000 6.32 0.00 39.04 5.73
125 126 2.351835 CCTTGATATCAGCGAGTACCGG 60.352 54.545 5.39 0.00 39.04 5.28
126 127 2.552743 TCCTTGATATCAGCGAGTACCG 59.447 50.000 5.39 0.00 42.21 4.02
127 128 3.057174 CCTCCTTGATATCAGCGAGTACC 60.057 52.174 20.96 0.00 0.00 3.34
128 129 3.821600 TCCTCCTTGATATCAGCGAGTAC 59.178 47.826 20.96 0.00 0.00 2.73
129 130 4.075682 CTCCTCCTTGATATCAGCGAGTA 58.924 47.826 20.96 11.02 0.00 2.59
130 131 2.890311 CTCCTCCTTGATATCAGCGAGT 59.110 50.000 20.96 0.00 0.00 4.18
131 132 2.352617 GCTCCTCCTTGATATCAGCGAG 60.353 54.545 17.96 17.96 0.00 5.03
132 133 1.615883 GCTCCTCCTTGATATCAGCGA 59.384 52.381 5.39 4.76 0.00 4.93
133 134 1.617850 AGCTCCTCCTTGATATCAGCG 59.382 52.381 5.39 1.59 0.00 5.18
134 135 2.352617 CGAGCTCCTCCTTGATATCAGC 60.353 54.545 8.47 4.23 0.00 4.26
135 136 2.230992 CCGAGCTCCTCCTTGATATCAG 59.769 54.545 8.47 0.75 0.00 2.90
136 137 2.158460 TCCGAGCTCCTCCTTGATATCA 60.158 50.000 8.47 0.00 0.00 2.15
137 138 2.520069 TCCGAGCTCCTCCTTGATATC 58.480 52.381 8.47 0.00 0.00 1.63
138 139 2.685106 TCCGAGCTCCTCCTTGATAT 57.315 50.000 8.47 0.00 0.00 1.63
139 140 2.454336 TTCCGAGCTCCTCCTTGATA 57.546 50.000 8.47 0.00 0.00 2.15
140 141 1.573108 TTTCCGAGCTCCTCCTTGAT 58.427 50.000 8.47 0.00 0.00 2.57
141 142 1.348064 TTTTCCGAGCTCCTCCTTGA 58.652 50.000 8.47 0.00 0.00 3.02
142 143 2.409948 ATTTTCCGAGCTCCTCCTTG 57.590 50.000 8.47 0.00 0.00 3.61
143 144 3.084786 CAAATTTTCCGAGCTCCTCCTT 58.915 45.455 8.47 0.00 0.00 3.36
144 145 2.305927 TCAAATTTTCCGAGCTCCTCCT 59.694 45.455 8.47 0.00 0.00 3.69
145 146 2.711542 TCAAATTTTCCGAGCTCCTCC 58.288 47.619 8.47 0.00 0.00 4.30
146 147 4.273724 GGTATCAAATTTTCCGAGCTCCTC 59.726 45.833 8.47 0.00 0.00 3.71
147 148 4.200092 GGTATCAAATTTTCCGAGCTCCT 58.800 43.478 8.47 0.00 0.00 3.69
148 149 3.002348 CGGTATCAAATTTTCCGAGCTCC 59.998 47.826 8.47 0.00 43.22 4.70
149 150 3.546218 GCGGTATCAAATTTTCCGAGCTC 60.546 47.826 18.54 2.73 43.22 4.09
150 151 2.354821 GCGGTATCAAATTTTCCGAGCT 59.645 45.455 18.54 0.00 43.22 4.09
151 152 2.354821 AGCGGTATCAAATTTTCCGAGC 59.645 45.455 18.54 8.41 43.22 5.03
152 153 3.621268 TGAGCGGTATCAAATTTTCCGAG 59.379 43.478 18.54 0.00 43.22 4.63
153 154 3.601435 TGAGCGGTATCAAATTTTCCGA 58.399 40.909 18.54 2.90 43.22 4.55
154 155 3.242739 CCTGAGCGGTATCAAATTTTCCG 60.243 47.826 13.15 13.15 43.37 4.30
155 156 3.694566 ACCTGAGCGGTATCAAATTTTCC 59.305 43.478 0.00 0.00 46.73 3.13
156 157 4.965119 ACCTGAGCGGTATCAAATTTTC 57.035 40.909 0.00 0.00 46.73 2.29
168 169 0.886490 GGCATATTGGACCTGAGCGG 60.886 60.000 0.00 0.00 39.35 5.52
169 170 0.179048 TGGCATATTGGACCTGAGCG 60.179 55.000 0.00 0.00 0.00 5.03
170 171 1.602311 CTGGCATATTGGACCTGAGC 58.398 55.000 0.00 0.00 0.00 4.26
171 172 1.134007 TGCTGGCATATTGGACCTGAG 60.134 52.381 0.00 0.00 0.00 3.35
172 173 0.918258 TGCTGGCATATTGGACCTGA 59.082 50.000 0.00 0.00 0.00 3.86
173 174 1.679680 CTTGCTGGCATATTGGACCTG 59.320 52.381 0.00 0.00 0.00 4.00
174 175 1.565759 TCTTGCTGGCATATTGGACCT 59.434 47.619 0.00 0.00 0.00 3.85
175 176 2.057137 TCTTGCTGGCATATTGGACC 57.943 50.000 0.00 0.00 0.00 4.46
176 177 3.633525 TGATTCTTGCTGGCATATTGGAC 59.366 43.478 0.00 0.00 0.00 4.02
177 178 3.900971 TGATTCTTGCTGGCATATTGGA 58.099 40.909 0.00 0.00 0.00 3.53
178 179 4.659111 TTGATTCTTGCTGGCATATTGG 57.341 40.909 0.00 0.00 0.00 3.16
179 180 5.870433 TGTTTTGATTCTTGCTGGCATATTG 59.130 36.000 0.00 0.00 0.00 1.90
180 181 6.040209 TGTTTTGATTCTTGCTGGCATATT 57.960 33.333 0.00 0.00 0.00 1.28
181 182 5.664294 TGTTTTGATTCTTGCTGGCATAT 57.336 34.783 0.00 0.00 0.00 1.78
182 183 5.465532 TTGTTTTGATTCTTGCTGGCATA 57.534 34.783 0.00 0.00 0.00 3.14
183 184 4.339872 TTGTTTTGATTCTTGCTGGCAT 57.660 36.364 0.00 0.00 0.00 4.40
184 185 3.815856 TTGTTTTGATTCTTGCTGGCA 57.184 38.095 0.00 0.00 0.00 4.92
185 186 4.025480 CACTTTGTTTTGATTCTTGCTGGC 60.025 41.667 0.00 0.00 0.00 4.85
186 187 4.508861 CCACTTTGTTTTGATTCTTGCTGG 59.491 41.667 0.00 0.00 0.00 4.85
187 188 4.025480 GCCACTTTGTTTTGATTCTTGCTG 60.025 41.667 0.00 0.00 0.00 4.41
188 189 4.122046 GCCACTTTGTTTTGATTCTTGCT 58.878 39.130 0.00 0.00 0.00 3.91
189 190 4.122046 AGCCACTTTGTTTTGATTCTTGC 58.878 39.130 0.00 0.00 0.00 4.01
190 191 5.350633 TGAGCCACTTTGTTTTGATTCTTG 58.649 37.500 0.00 0.00 0.00 3.02
191 192 5.596836 TGAGCCACTTTGTTTTGATTCTT 57.403 34.783 0.00 0.00 0.00 2.52
192 193 5.537674 AGATGAGCCACTTTGTTTTGATTCT 59.462 36.000 0.00 0.00 0.00 2.40
193 194 5.776744 AGATGAGCCACTTTGTTTTGATTC 58.223 37.500 0.00 0.00 0.00 2.52
194 195 5.796424 AGATGAGCCACTTTGTTTTGATT 57.204 34.783 0.00 0.00 0.00 2.57
195 196 6.006449 AGTAGATGAGCCACTTTGTTTTGAT 58.994 36.000 0.00 0.00 0.00 2.57
196 197 5.376625 AGTAGATGAGCCACTTTGTTTTGA 58.623 37.500 0.00 0.00 0.00 2.69
197 198 5.695851 AGTAGATGAGCCACTTTGTTTTG 57.304 39.130 0.00 0.00 0.00 2.44
198 199 5.412904 GCTAGTAGATGAGCCACTTTGTTTT 59.587 40.000 0.00 0.00 32.25 2.43
199 200 4.938226 GCTAGTAGATGAGCCACTTTGTTT 59.062 41.667 0.00 0.00 32.25 2.83
200 201 4.508662 GCTAGTAGATGAGCCACTTTGTT 58.491 43.478 0.00 0.00 32.25 2.83
201 202 3.429547 CGCTAGTAGATGAGCCACTTTGT 60.430 47.826 0.00 0.00 35.13 2.83
202 203 3.119291 CGCTAGTAGATGAGCCACTTTG 58.881 50.000 0.00 0.00 35.13 2.77
203 204 2.101582 CCGCTAGTAGATGAGCCACTTT 59.898 50.000 0.00 0.00 35.13 2.66
204 205 1.683917 CCGCTAGTAGATGAGCCACTT 59.316 52.381 0.00 0.00 35.13 3.16
205 206 1.323412 CCGCTAGTAGATGAGCCACT 58.677 55.000 0.00 0.00 35.13 4.00
206 207 0.319125 GCCGCTAGTAGATGAGCCAC 60.319 60.000 0.00 0.00 35.13 5.01
207 208 1.464376 GGCCGCTAGTAGATGAGCCA 61.464 60.000 0.00 0.00 38.79 4.75
208 209 1.290639 GGCCGCTAGTAGATGAGCC 59.709 63.158 0.00 3.05 35.13 4.70
209 210 1.290639 GGGCCGCTAGTAGATGAGC 59.709 63.158 0.00 0.00 35.24 4.26
210 211 1.173444 ACGGGCCGCTAGTAGATGAG 61.173 60.000 28.71 0.00 0.00 2.90
211 212 1.152819 ACGGGCCGCTAGTAGATGA 60.153 57.895 28.71 0.00 0.00 2.92
212 213 1.007271 CACGGGCCGCTAGTAGATG 60.007 63.158 28.71 10.48 0.00 2.90
213 214 2.857744 GCACGGGCCGCTAGTAGAT 61.858 63.158 28.71 0.00 0.00 1.98
214 215 3.524606 GCACGGGCCGCTAGTAGA 61.525 66.667 28.71 0.00 0.00 2.59
226 227 1.244019 CCTCCTTTTTCCTGGCACGG 61.244 60.000 0.00 0.00 0.00 4.94
227 228 0.250727 TCCTCCTTTTTCCTGGCACG 60.251 55.000 0.00 0.00 0.00 5.34
228 229 1.073923 TCTCCTCCTTTTTCCTGGCAC 59.926 52.381 0.00 0.00 0.00 5.01
229 230 1.444933 TCTCCTCCTTTTTCCTGGCA 58.555 50.000 0.00 0.00 0.00 4.92
230 231 2.291217 ACATCTCCTCCTTTTTCCTGGC 60.291 50.000 0.00 0.00 0.00 4.85
231 232 3.728385 ACATCTCCTCCTTTTTCCTGG 57.272 47.619 0.00 0.00 0.00 4.45
232 233 6.939163 CCATATACATCTCCTCCTTTTTCCTG 59.061 42.308 0.00 0.00 0.00 3.86
233 234 6.621514 ACCATATACATCTCCTCCTTTTTCCT 59.378 38.462 0.00 0.00 0.00 3.36
234 235 6.712547 CACCATATACATCTCCTCCTTTTTCC 59.287 42.308 0.00 0.00 0.00 3.13
235 236 6.712547 CCACCATATACATCTCCTCCTTTTTC 59.287 42.308 0.00 0.00 0.00 2.29
236 237 6.605119 CCACCATATACATCTCCTCCTTTTT 58.395 40.000 0.00 0.00 0.00 1.94
237 238 5.456763 GCCACCATATACATCTCCTCCTTTT 60.457 44.000 0.00 0.00 0.00 2.27
238 239 4.042187 GCCACCATATACATCTCCTCCTTT 59.958 45.833 0.00 0.00 0.00 3.11
239 240 3.584848 GCCACCATATACATCTCCTCCTT 59.415 47.826 0.00 0.00 0.00 3.36
240 241 3.177228 GCCACCATATACATCTCCTCCT 58.823 50.000 0.00 0.00 0.00 3.69
241 242 2.093973 CGCCACCATATACATCTCCTCC 60.094 54.545 0.00 0.00 0.00 4.30
242 243 2.826128 TCGCCACCATATACATCTCCTC 59.174 50.000 0.00 0.00 0.00 3.71
243 244 2.828520 CTCGCCACCATATACATCTCCT 59.171 50.000 0.00 0.00 0.00 3.69
244 245 2.563179 ACTCGCCACCATATACATCTCC 59.437 50.000 0.00 0.00 0.00 3.71
245 246 3.005897 ACACTCGCCACCATATACATCTC 59.994 47.826 0.00 0.00 0.00 2.75
246 247 2.965831 ACACTCGCCACCATATACATCT 59.034 45.455 0.00 0.00 0.00 2.90
247 248 3.318017 GACACTCGCCACCATATACATC 58.682 50.000 0.00 0.00 0.00 3.06
248 249 2.037251 GGACACTCGCCACCATATACAT 59.963 50.000 0.00 0.00 0.00 2.29
249 250 1.411246 GGACACTCGCCACCATATACA 59.589 52.381 0.00 0.00 0.00 2.29
250 251 1.270147 GGGACACTCGCCACCATATAC 60.270 57.143 0.00 0.00 0.00 1.47
251 252 1.045407 GGGACACTCGCCACCATATA 58.955 55.000 0.00 0.00 0.00 0.86
252 253 1.830145 GGGACACTCGCCACCATAT 59.170 57.895 0.00 0.00 0.00 1.78
253 254 2.717044 CGGGACACTCGCCACCATA 61.717 63.158 0.00 0.00 0.00 2.74
254 255 4.082523 CGGGACACTCGCCACCAT 62.083 66.667 0.00 0.00 0.00 3.55
257 258 3.771160 ATCCGGGACACTCGCCAC 61.771 66.667 0.00 0.00 0.00 5.01
258 259 3.770040 CATCCGGGACACTCGCCA 61.770 66.667 0.00 0.00 0.00 5.69
259 260 2.311688 AATCATCCGGGACACTCGCC 62.312 60.000 0.00 0.00 0.00 5.54
260 261 0.462047 AAATCATCCGGGACACTCGC 60.462 55.000 0.00 0.00 0.00 5.03
261 262 1.134818 TCAAATCATCCGGGACACTCG 60.135 52.381 0.00 0.00 0.00 4.18
262 263 2.678336 GTTCAAATCATCCGGGACACTC 59.322 50.000 0.00 0.00 0.00 3.51
263 264 2.711542 GTTCAAATCATCCGGGACACT 58.288 47.619 0.00 0.00 0.00 3.55
264 265 1.396996 CGTTCAAATCATCCGGGACAC 59.603 52.381 0.00 0.00 0.00 3.67
265 266 1.732941 CGTTCAAATCATCCGGGACA 58.267 50.000 0.00 0.00 0.00 4.02
266 267 0.377203 GCGTTCAAATCATCCGGGAC 59.623 55.000 0.00 0.00 0.00 4.46
267 268 0.035915 TGCGTTCAAATCATCCGGGA 60.036 50.000 0.00 0.00 0.00 5.14
268 269 0.378257 CTGCGTTCAAATCATCCGGG 59.622 55.000 0.00 0.00 0.00 5.73
269 270 0.248215 GCTGCGTTCAAATCATCCGG 60.248 55.000 0.00 0.00 0.00 5.14
270 271 0.587242 CGCTGCGTTCAAATCATCCG 60.587 55.000 14.93 0.00 0.00 4.18
271 272 0.863119 GCGCTGCGTTCAAATCATCC 60.863 55.000 24.04 0.00 0.00 3.51
272 273 0.097674 AGCGCTGCGTTCAAATCATC 59.902 50.000 24.04 2.31 0.00 2.92
273 274 1.328680 CTAGCGCTGCGTTCAAATCAT 59.671 47.619 22.90 1.64 0.00 2.45
274 275 0.721154 CTAGCGCTGCGTTCAAATCA 59.279 50.000 22.90 0.00 0.00 2.57
275 276 0.587489 GCTAGCGCTGCGTTCAAATC 60.587 55.000 22.90 4.63 0.00 2.17
276 277 1.021390 AGCTAGCGCTGCGTTCAAAT 61.021 50.000 22.90 3.00 46.86 2.32
277 278 1.667830 AGCTAGCGCTGCGTTCAAA 60.668 52.632 22.90 1.49 46.86 2.69
278 279 2.048222 AGCTAGCGCTGCGTTCAA 60.048 55.556 22.90 2.28 46.86 2.69
289 290 3.827898 ACGAGGTCGGCAGCTAGC 61.828 66.667 6.62 6.62 44.95 3.42
290 291 2.103143 CACGAGGTCGGCAGCTAG 59.897 66.667 4.13 0.00 44.95 3.42
291 292 2.273179 AACACGAGGTCGGCAGCTA 61.273 57.895 4.13 0.00 44.95 3.32
292 293 3.616721 AACACGAGGTCGGCAGCT 61.617 61.111 4.13 0.00 44.95 4.24
293 294 3.414700 CAACACGAGGTCGGCAGC 61.415 66.667 4.13 0.00 44.95 5.25
294 295 2.738521 CCAACACGAGGTCGGCAG 60.739 66.667 4.13 0.00 44.95 4.85
295 296 4.980805 GCCAACACGAGGTCGGCA 62.981 66.667 8.67 0.00 44.95 5.69
296 297 4.681978 AGCCAACACGAGGTCGGC 62.682 66.667 5.93 5.93 44.95 5.54
297 298 2.709125 TTCAGCCAACACGAGGTCGG 62.709 60.000 4.13 0.00 44.95 4.79
298 299 1.284982 CTTCAGCCAACACGAGGTCG 61.285 60.000 0.00 0.00 46.33 4.79
299 300 0.033504 TCTTCAGCCAACACGAGGTC 59.966 55.000 0.00 0.00 0.00 3.85
300 301 0.034059 CTCTTCAGCCAACACGAGGT 59.966 55.000 0.00 0.00 0.00 3.85
301 302 0.034059 ACTCTTCAGCCAACACGAGG 59.966 55.000 0.00 0.00 0.00 4.63
302 303 2.600731 CTACTCTTCAGCCAACACGAG 58.399 52.381 0.00 0.00 0.00 4.18
303 304 1.336887 GCTACTCTTCAGCCAACACGA 60.337 52.381 0.00 0.00 32.68 4.35
304 305 1.071605 GCTACTCTTCAGCCAACACG 58.928 55.000 0.00 0.00 32.68 4.49
305 306 2.464157 AGCTACTCTTCAGCCAACAC 57.536 50.000 0.00 0.00 39.99 3.32
306 307 3.492102 AAAGCTACTCTTCAGCCAACA 57.508 42.857 0.00 0.00 39.99 3.33
307 308 3.565902 ACAAAAGCTACTCTTCAGCCAAC 59.434 43.478 0.00 0.00 39.99 3.77
308 309 3.820557 ACAAAAGCTACTCTTCAGCCAA 58.179 40.909 0.00 0.00 39.99 4.52
309 310 3.492102 ACAAAAGCTACTCTTCAGCCA 57.508 42.857 0.00 0.00 39.99 4.75
310 311 4.570930 AGTACAAAAGCTACTCTTCAGCC 58.429 43.478 0.00 0.00 39.99 4.85
311 312 5.474825 AGAGTACAAAAGCTACTCTTCAGC 58.525 41.667 9.82 0.00 45.46 4.26
317 318 5.795972 AGGGAAAGAGTACAAAAGCTACTC 58.204 41.667 5.58 5.58 40.30 2.59
318 319 5.827326 AGGGAAAGAGTACAAAAGCTACT 57.173 39.130 0.00 0.00 0.00 2.57
319 320 7.384477 TCTTAGGGAAAGAGTACAAAAGCTAC 58.616 38.462 0.00 0.00 39.36 3.58
320 321 7.549147 TCTTAGGGAAAGAGTACAAAAGCTA 57.451 36.000 0.00 0.00 39.36 3.32
321 322 6.435292 TCTTAGGGAAAGAGTACAAAAGCT 57.565 37.500 0.00 0.00 39.36 3.74
322 323 7.506328 TTTCTTAGGGAAAGAGTACAAAAGC 57.494 36.000 0.00 0.00 44.95 3.51
350 351 9.159364 GGTATTCATTTTTCTTAAGTAGGACGT 57.841 33.333 1.63 0.00 0.00 4.34
351 352 9.158233 TGGTATTCATTTTTCTTAAGTAGGACG 57.842 33.333 1.63 0.00 0.00 4.79
354 355 9.736023 GCATGGTATTCATTTTTCTTAAGTAGG 57.264 33.333 1.63 0.00 32.92 3.18
355 356 9.438291 CGCATGGTATTCATTTTTCTTAAGTAG 57.562 33.333 1.63 0.00 32.92 2.57
356 357 9.168451 TCGCATGGTATTCATTTTTCTTAAGTA 57.832 29.630 1.63 0.00 32.92 2.24
357 358 8.050778 TCGCATGGTATTCATTTTTCTTAAGT 57.949 30.769 1.63 0.00 32.92 2.24
359 360 9.944663 GTATCGCATGGTATTCATTTTTCTTAA 57.055 29.630 0.00 0.00 32.92 1.85
360 361 9.337396 AGTATCGCATGGTATTCATTTTTCTTA 57.663 29.630 0.00 0.00 32.92 2.10
361 362 8.225603 AGTATCGCATGGTATTCATTTTTCTT 57.774 30.769 0.00 0.00 32.92 2.52
362 363 7.807977 AGTATCGCATGGTATTCATTTTTCT 57.192 32.000 0.00 0.00 32.92 2.52
363 364 7.379529 CCAAGTATCGCATGGTATTCATTTTTC 59.620 37.037 0.00 0.00 32.92 2.29
364 365 7.147915 ACCAAGTATCGCATGGTATTCATTTTT 60.148 33.333 0.00 0.00 46.22 1.94
365 366 6.321181 ACCAAGTATCGCATGGTATTCATTTT 59.679 34.615 0.00 0.00 46.22 1.82
366 367 5.827797 ACCAAGTATCGCATGGTATTCATTT 59.172 36.000 0.00 0.00 46.22 2.32
367 368 5.376625 ACCAAGTATCGCATGGTATTCATT 58.623 37.500 0.00 0.00 46.22 2.57
368 369 4.973168 ACCAAGTATCGCATGGTATTCAT 58.027 39.130 0.00 0.00 46.22 2.57
369 370 4.415881 ACCAAGTATCGCATGGTATTCA 57.584 40.909 0.00 0.00 46.22 2.57
370 371 6.128282 CCATTACCAAGTATCGCATGGTATTC 60.128 42.308 4.85 0.00 46.77 1.75
371 372 5.705441 CCATTACCAAGTATCGCATGGTATT 59.295 40.000 4.85 0.00 46.77 1.89
372 373 5.012664 TCCATTACCAAGTATCGCATGGTAT 59.987 40.000 4.85 0.00 46.77 2.73
373 374 4.345547 TCCATTACCAAGTATCGCATGGTA 59.654 41.667 0.00 0.00 46.22 3.25
375 376 3.498397 GTCCATTACCAAGTATCGCATGG 59.502 47.826 0.00 0.00 41.46 3.66
376 377 4.126437 TGTCCATTACCAAGTATCGCATG 58.874 43.478 0.00 0.00 0.00 4.06
377 378 4.100963 TCTGTCCATTACCAAGTATCGCAT 59.899 41.667 0.00 0.00 0.00 4.73
378 379 3.449377 TCTGTCCATTACCAAGTATCGCA 59.551 43.478 0.00 0.00 0.00 5.10
379 380 3.802685 GTCTGTCCATTACCAAGTATCGC 59.197 47.826 0.00 0.00 0.00 4.58
380 381 4.042398 CGTCTGTCCATTACCAAGTATCG 58.958 47.826 0.00 0.00 0.00 2.92
381 382 3.802685 GCGTCTGTCCATTACCAAGTATC 59.197 47.826 0.00 0.00 0.00 2.24
382 383 3.431766 GGCGTCTGTCCATTACCAAGTAT 60.432 47.826 0.00 0.00 0.00 2.12
383 384 2.093869 GGCGTCTGTCCATTACCAAGTA 60.094 50.000 0.00 0.00 0.00 2.24
384 385 1.338769 GGCGTCTGTCCATTACCAAGT 60.339 52.381 0.00 0.00 0.00 3.16
385 386 1.066143 AGGCGTCTGTCCATTACCAAG 60.066 52.381 0.00 0.00 0.00 3.61
386 387 0.981183 AGGCGTCTGTCCATTACCAA 59.019 50.000 0.00 0.00 0.00 3.67
387 388 1.855295 TAGGCGTCTGTCCATTACCA 58.145 50.000 0.00 0.00 0.00 3.25
388 389 3.470645 AATAGGCGTCTGTCCATTACC 57.529 47.619 0.00 0.00 0.00 2.85
389 390 8.773404 ATTATAAATAGGCGTCTGTCCATTAC 57.227 34.615 0.00 0.00 0.00 1.89
423 424 9.926158 CATCTAGATATGAATTAGACAAGCTGT 57.074 33.333 4.54 0.00 0.00 4.40
424 425 9.926158 ACATCTAGATATGAATTAGACAAGCTG 57.074 33.333 4.54 0.00 0.00 4.24
492 493 6.976636 TCCAATTTTGTTTTCCAACTTGTC 57.023 33.333 0.00 0.00 33.58 3.18
593 595 3.870419 TGTTTTTGCTGTTGATTTCTGCC 59.130 39.130 0.00 0.00 0.00 4.85
621 623 3.509575 TGATTTATTTGGTGCGCTCCTTT 59.490 39.130 27.24 14.93 0.00 3.11
624 626 3.179048 GTTGATTTATTTGGTGCGCTCC 58.821 45.455 21.41 21.41 0.00 4.70
628 630 2.162608 TCGGGTTGATTTATTTGGTGCG 59.837 45.455 0.00 0.00 0.00 5.34
641 645 1.600023 AAAATGCTCGTTCGGGTTGA 58.400 45.000 0.00 0.00 0.00 3.18
645 649 2.697431 TTGAAAAATGCTCGTTCGGG 57.303 45.000 0.00 0.00 0.00 5.14
697 702 5.065914 GGAGAGCTGTATTAATTGGATGCA 58.934 41.667 0.00 0.00 0.00 3.96
820 844 2.522923 AGCTCGGATCCAGCGGAT 60.523 61.111 22.45 9.42 46.28 4.18
851 875 2.427812 GGTTTTTGTTTGGGGTCGAAGA 59.572 45.455 0.00 0.00 0.00 2.87
910 934 0.250553 GTCGTTGGTGGAATGGTGGA 60.251 55.000 0.00 0.00 0.00 4.02
935 959 1.069978 GCTATGAGGAGAGGTGAAGGC 59.930 57.143 0.00 0.00 0.00 4.35
954 978 2.745102 CGGAGGTTAGCTAGCTTTAGC 58.255 52.381 24.88 19.75 43.12 3.09
957 981 1.137282 GAGCGGAGGTTAGCTAGCTTT 59.863 52.381 24.88 6.50 44.69 3.51
958 982 0.747852 GAGCGGAGGTTAGCTAGCTT 59.252 55.000 24.88 4.01 44.69 3.74
1146 1182 1.323271 TGCAGAAGTAGGAGGCGAGG 61.323 60.000 0.00 0.00 0.00 4.63
1653 1689 9.769093 TCTAAAACAAGAGAAAAAGAAACGAAG 57.231 29.630 0.00 0.00 0.00 3.79
1692 1728 7.948034 TTCCTAACCTGAACTTTTCTTTCAA 57.052 32.000 0.00 0.00 32.61 2.69
1721 1759 6.211384 CCCCAGACCACAAAAGAAATTTCTAT 59.789 38.462 20.76 10.44 36.28 1.98
1727 1765 2.965147 CACCCCAGACCACAAAAGAAAT 59.035 45.455 0.00 0.00 0.00 2.17
1802 1842 4.343814 TGTATCCGGATTCAGCACAGAATA 59.656 41.667 24.71 0.00 38.30 1.75
1810 1850 2.037772 ACCATCTGTATCCGGATTCAGC 59.962 50.000 34.35 19.04 36.52 4.26
1819 1859 5.066593 GGGAATTCTCAACCATCTGTATCC 58.933 45.833 5.23 0.00 0.00 2.59
1826 1866 2.710096 TCGGGGAATTCTCAACCATC 57.290 50.000 7.81 0.00 0.00 3.51
1861 1901 4.333926 GTGATAATCCCTCTTTGAGCACAC 59.666 45.833 0.00 0.00 0.00 3.82
1882 1922 3.569701 ACCCAGTTTGCTAATGTCAAGTG 59.430 43.478 0.00 0.00 0.00 3.16
1926 1969 6.699366 ACATTGTAACATTGATCATTTGCCA 58.301 32.000 0.00 0.00 0.00 4.92
1990 2034 5.295431 TGCATTTACATTTCGAGGTTGAG 57.705 39.130 0.00 0.00 0.00 3.02
1995 2039 4.036027 AGAGCATGCATTTACATTTCGAGG 59.964 41.667 21.98 0.00 0.00 4.63
2020 2064 4.495422 ACGAATCAGTGTAGGATGACAAC 58.505 43.478 0.00 0.00 0.00 3.32
2027 2071 5.079689 TGCATTTACGAATCAGTGTAGGA 57.920 39.130 0.00 0.00 0.00 2.94
2028 2072 4.260375 GCTGCATTTACGAATCAGTGTAGG 60.260 45.833 0.00 0.00 0.00 3.18
2029 2073 4.329801 TGCTGCATTTACGAATCAGTGTAG 59.670 41.667 0.00 0.00 0.00 2.74
2080 2124 7.776933 CTGGAAGTCAAGAATAATCGAATCA 57.223 36.000 0.00 0.00 0.00 2.57
2119 2166 6.312426 AGAAGAGTTTGAATATCGCTGTTCTG 59.688 38.462 0.00 0.00 38.04 3.02
2120 2167 6.402222 AGAAGAGTTTGAATATCGCTGTTCT 58.598 36.000 0.00 0.00 35.76 3.01
2132 2179 5.527582 GGTCAACTTGCTAGAAGAGTTTGAA 59.472 40.000 1.04 0.00 31.63 2.69
2134 2181 4.816385 TGGTCAACTTGCTAGAAGAGTTTG 59.184 41.667 1.04 0.00 31.63 2.93
2135 2182 5.036117 TGGTCAACTTGCTAGAAGAGTTT 57.964 39.130 1.04 0.00 31.63 2.66
2136 2183 4.689612 TGGTCAACTTGCTAGAAGAGTT 57.310 40.909 1.04 0.00 34.14 3.01
2137 2184 4.689612 TTGGTCAACTTGCTAGAAGAGT 57.310 40.909 1.04 0.00 0.00 3.24
2138 2185 6.566197 AAATTGGTCAACTTGCTAGAAGAG 57.434 37.500 1.04 0.00 0.00 2.85
2139 2186 6.995686 TGTAAATTGGTCAACTTGCTAGAAGA 59.004 34.615 1.04 0.00 0.00 2.87
2140 2187 7.202016 TGTAAATTGGTCAACTTGCTAGAAG 57.798 36.000 1.04 0.00 0.00 2.85
2144 2205 7.375053 GGAATTGTAAATTGGTCAACTTGCTA 58.625 34.615 0.00 0.00 0.00 3.49
2381 2450 0.881118 TTTGTTCGGATCAAGGCAGC 59.119 50.000 0.00 0.00 0.00 5.25
2469 2538 5.244785 TGCAGTTACTACCTACGATTCAG 57.755 43.478 0.00 0.00 0.00 3.02
2505 2576 2.996249 TTCTCTCCAGCAGCCAATAG 57.004 50.000 0.00 0.00 0.00 1.73
2509 2580 2.433604 CTCTTATTCTCTCCAGCAGCCA 59.566 50.000 0.00 0.00 0.00 4.75
2526 2597 7.254590 CGAAATCAACTGACACTTTCTTCTCTT 60.255 37.037 3.89 0.00 0.00 2.85
2552 2623 5.077424 GTGTTTCATCCATACGTTCGAAAC 58.923 41.667 0.00 5.41 41.48 2.78
2557 2628 2.222953 GCCGTGTTTCATCCATACGTTC 60.223 50.000 0.00 0.00 33.28 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.