>input_sequence_74273
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---------------------------------------------------------------------------ATGAA
CGCCGGTGGCCCGCCGGCGCCCGGCCGGTTCACCCCGGGCGACGGCACCTCCGTGGGCATGTTCAGCTCCGACCGCATCG
GCGGCTTCGGCTACGGCGTCGGCGTCTCCGTCGGCATCCTCCTCCTCATCACCACCATCACCCTCGCCTCCTACTTCTGC
ACCCGCGCGCCCCCGCCCGGCCCGGAGGCCGCCGCCGACGCAGACGGGGCTGCGCGGCGAAGGCGACGTGCGCGGCGCCG
CGAGGGCGGCGGCGACAACGATGGCGGCGGGGCAGCCGGTGACGACGTCGACGTGGAGCTCGGCATCGACGAGGCCACGC
TCAAGGGGTACCCGGAGGTGGTGTACGGCGAGGCGCGGAGGAACAAGAACAAGAAGCTGGGCACCACCTGCACCTGCTGC
TCCGTGTGCCTCGACAACTACGGCGACGGCGACGTGCTCCGGATGCTGCCGGACTGCGGCCACCTGTTCCACCGGGAGTG
CGTCGACCCCTGGCTCCGGAAGCACCCGACCTGCCCCGTCTGCCGGACCTCGCCGCTGCCCAGCCCCTTGCCCACGCCGC
TCGCCGAGGTCACGCCGCTGGCCATGACGAGGCTGTCCTCCTGA------------------------------------
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>chr5B_1_TraesCS5B01G428100
AGGCACTTCTGGCTGGGCTGCGTCACCTGTCCGCTCTGTATAGAGGCCCAATGATTGCGAAAACAGACTGCATGCACATT
GCGAATGAACTCAGGCCGGGCACCAGTAATTTGTCTGCATGTTACCCGGTACTCGCTGATATCAAGGAGGAGCTCGGAAA
ATTTGATACCGCTCAGGTCCAATATGCCAGCAAGAATCAAAACAAAGTGGCTCATCTACTAGCGGCCCGTGCCAGGAAAA
AGGAGGAGATGTATATGGTGGCGAGTGTCCCGGATGATTTGAACGCAGCGCTAGCTGCCGACCTCGTGTTGGCTGAAGAG
TAGCTTTTGTACTCTTTCCCTAAGAAAAAAACGTCCTACTTAAGAAAAATGAATACCATGCGATACTTGGTAATGGACAG
ACGCCTATTTATAATATATAAAAACAGCTTGTCTAATTCATATCTAGATGTTTTCTAAGGACATATAAAAATTTGCACAG
TATAGGTTCTCGGACAAGTTGGAAAACAAAATTGGA-AGAAAGACAACCGAAGAAGCCGCAAAAGTCAGCCCATGAACCA
TGATTTGCATTGACCACGGCGGAACTGACAAACAGGCAGAAATCAACAGCAAAAACATGCAGAAAGGAGCGCACCAAAT-
-AAATCAACCCGAACGAGCATTTTTCAAAT-GCCCAACGCAGCATTGACCTCGATCGATGCT-----------GCATCCA
A--TTAATACAGCTCTCCCGCACTAC------CCGTACATGGTATTCACTCCGCTAGTCGTCGTCTCCCCGTCCCGCTCC
CCGCAACATGCAAAGCGTTGACGTCCCCCTCGCAGCAACCTCCATCCGCTGGATCCGAGCTCCCTCCCTCCCTTTCTTCG
ACCCCAAACAAAAACCCCACCAGACGATCAGGAATCGCTCTCCCCTCTCCACCTCCACCATTCCACCAACGACTCGTCGC
CTTCACCTCTCCTCATAGCTAAAGCTAGCTAACCTCCGCTCGCTTCGGTCCA------------GCGACGTCGGGATGAA
CGCCGGTGGCCCGCCGGCGCCCGGCCGGTTCACCCCGGGCGACGGCACCTCCGTGGGCATGTTCAGCTCCGACCGCATCG
GCGGCTTCGGCTACGGCGTCGGCGTCTCCGTCGGCATCCTCCTCCTCATCACCACCATCACCCTCGCCTCCTACTTCTGC
ACCCGCGCGCCCCCGCCCGGCCCGGAGGCCGCCGCCGACGCAGACGGGGCTGCGCGGCGAAGGCGACGTGCGCGGCGCCG
CGAGGGCGGCGGCGACAACGATGGCGGCGGGGCAGCCGGTGACGACGTCGACGTGGAGCTCGGCATCGACGAGGCCACGC
TCAAGGGGTACCCGGAGGTGGTGTACGGCGAGGCGCGGAGGAACAAGAACAAGAAGCTGGGCACCACCTGCACCTGCTGC
TCCGTGTGCCTCGACAACTACGGCGACGGCGACGTGCTCCGGATGCTGCCGGACTGCGGCCACCTGTTCCACCGGGAGTG
CGTCGACCCCTGGCTCCGGAAGCACCCGACCTGCCCCGTCTGCCGGACCTCGCCGCTGCCCAGCCCCTTGCCCACGCCGC
TCGCCGAGGTCACGCCGCTGGCCATGACGAGGCTGTCCTCCTGACACCACACAGAGGTTCTTGCGTGGTTTTAATGTTCT
TGCTCTTTCTTCGTTTCTTTTTCTCTTGTTTTAGAAAATTGGGATTGTTG--AAAGAAAAGTTCAGGTTAGGAATCAAAT
AGAAATTTCTTTTGTGGTCTGGGGTGTAAATCTGGTTTCAGCTTAGTTTCA--CTTCTGATGGAAATGCAAGTCAGCCTA
GTATTCTGTGCTGAATCCGGATACAGATGGTTGAGAATTCCCCGATCAGAAGTTCAGAACGTGTGCTCAAAGAGGGATTA
TCACTTGACATTAGCAAACTGGGT---GTAGAATTGTAGATCTCTGTTTGGCAAATGATCAATGTTACAATGTAGAGTAG
TTTGTCTTGAATATACTGAATCAAATGGT-GGTCTCAACCTCGAAATGTAAATGCATGCTCTCGTTGTCATCCTACACTG
ATTCGTAAATGCAGCAGACAAGTTCAGAATCAGCGCTTTCGGCTGATTCGATTATTCTTGACTTCCAGTGTCAGT---TA
GAACTCAGAACAGCGATATTCAAACTCT--------------TCTAGCAAGTTGACCAATTTACAATTCCGGCAACCCCC
AGAACTGAATCTTTAATATAATCTTGGTCTCTAAGCAAGGT-----ACATGCAGCCCCCTTCCCCCCAGGTTTGCAGGGT
CAATCATGCG-AAACCCGTAGTTTTCATTGTGCTTTGGAGTAACACGGACACC--TATGCGGCTTCATGTTCTACGAGAC
AAGATATAGAGCAAAATGACAGGCACCTTCGATTCCAGGGCACGCGACTGCTGCCTTGATCCGAACAAAACAATGACCGT
CCATTTGAATCTTAACTTTTTTTTTGTGCACTGATCTGCTGAGAATCTGGGAGCTCGCTGAATCGTAGGTAGTA--ACTG
CATTGTGTTCAGTTTCTATTGGCTGCTGGAGAGAATAAGAGAAGAAAGTGTCAGTTGATTTCGTTTCGAACG---TATGG
ATGAAACACGGCAGAAAATGGTACTCCTGTATCAGGATTCGG
>chr5A_445
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--------------------------------------------TAGATGTTTTCTAAGGACGTATAAAAATTTGCACAG
TATAGGTTCTCGCACAAGTTGGAAAACAAAATTGGA-AGAAAGACAACCGAAGAAGCCGCAAAAGTCAGCCCATGAACCA
TGATTTGCATTGACCACGGCGGAACTGACAAACAAGCAGAAATCAACAGCAAAAACATGCAGGAAAGAGGGCACCAATC-
-AAACCAAACCGAACGAGCATTTTAAAAATCGCCCGACGCAGCATTGACCTCGATCGATGCCATAGCCCGGACGCATCCA
A--TTAATACAGCTCTCCCGCACTACTCGTACCCGTACATGGTATTCGCTCCCCTAGTCGTCGTCTCCCCGTCCCGCTCC
CCGCAACATGCAAAGCGTTGACGTCCCCCTCGCAGCAACCTCCGTCCGCTGGATCCGAGCTCCCTCCCTCCCTTCCTTCG
ACCCCAAACAAAAACCCCACCGGACGATCAGGAATCGCTCTCCCCTCTCCACCACCACCATTCCACCAACGACTCCTCAC
CTTCACCTCTCCTAG---CT--AGCTAGCTAGCCTCCGCTCGCTTCGGTCCAGCGGCGACGAGCGCGACGTCGGGATGAA
CGCCGGTGCCCCGCCGGCGCCCGGCCGGTTCACCCCGGGCGACGGCACCTCCGTGGGCATGTTCAGCTCCGACCGCATCG
GCGGCTTCGGCTACGGCGTCGGCGTCTCCGTCGGCATCCTCCTCCTCATCACCACCATCACGCTCGCCTCCTACTTCTGC
ACCCGCGCGCCCCCGCCCGGCCCGGAGGCCGCCGCCGACGCCGAAGGGACGGCCCGGCGAAGGCGGCGTGCGCGGCGCCG
CGAGGGCGGCGGCGACAACGATGGCGGCGGGGCAACCGGCGACGACGTCGACGTGGAGCTCGGCATCGACGAGGCCACGC
TCAAGGGGTACCCGGAGGTGGTGTACGGCGAGGCGCGGAGGAGCAAGAACAGGAAGCTGGGCACCACCTGCACCTGCTGC
TCCGTGTGCCTCGACAACTACGGCGACGGCGACGTGCTCCGCATGCTGCCGGACTGCGGCCACCTGTTCCACCGGGAGTG
CGTCGACCCCTGGCTCCGGAAGCACCCGACCTGCCCCGTCTGCCGGACCTCGCCGCTGCCCAGCCCCTTGCCCACGCCCC
TCGCGGAGGTCACGCCGCTGGCCATGACGAGGCTGTCCTCCTGACACCACACAGAGGTTCTTGCGTGGTTTTAATGTTCT
TGCTCTTTTCTCGTTCCTTTTTCTCTTGTTTTAGAAAATTGGGATTGGTG--AAAGAAAAGTTCAGGTTAGGAATCAATT
AGAAGTTTCTTTTGTGATCTGGGGTGTAAATCCGGTTTCAGCTTAGTTTCA--CTTCTGATGGAAATGCAAGTCAGCCTA
GCATTCTGTCCTGAATCCTGATACAAATGGTTGAGAGTTCCCCGATCAGAAGTTCAGAACATGTGCTCAAAGAGGGATTA
TTACTTGACATTAGCAAATTGGGT---G------------------------------TCAATGTCACAATGTAGAGTAG
GTTGTCTTGAATATACTGAATCAAATGTTGGGTTTCAAGCTCGAAATGTAAATGCATTCTCTCATTGCCA---TACACTG
ATTCGCAAATGCAGCAGACAAGTTCAGAATCAGCGCTTTGGGCCGATTCGA-TATTCTTGGCTTCCAGTGTCAGT---TA
GAACATCGAACAGCGATAGTTCGGTATTCAATTTCAAACACCTCCAGCAAGTTGACCAATTTACAATTCCGGCAACCCCC
CAAACTGAATCTTTAATATAATCTTGGTCTCTAAGCAAGGTGGAGTACATGCAGCCCCCTTCCCCCCAGGTTTGCAGGGT
CAATCATGCGAAAACCCGTAGTTTTCATTGTGCTTTGGAGTAACACAGACACC--CATGCGGCTTCATGTTCTACGAGAC
AAGATATAGAGCAAAATGACAGGCACCTTCGATTCCAGGGCACGCGACTTCTGCCTTGATCCGAACAAAACAATGACCGT
CCATTTGAAT-TTTAACTTATTTTTGTGCACTGATCTGCTGAGAGTCTGGGTGCTCGTTGAATCGTAGGC------ACTG
CATTGGGTTCAGTTTTTACCGGCTGCTGGAGAGAATCAGAGAAGAAAGTGTCGGTTGATTACATTTCAAACGTACTATGG
ATGAAACACGGCAGAAAATGGTA-------------------
>chr5D_463
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--------------------------------------------------------------ATATAAAAATATGCTCAG
TGTAGGTTCA--CACAAGTTGCAAAACAAAATTGGATAGAAAGACAACCGAAGAAGCCGCAAAAGTCAGCCCATGAACCA
TGATCTGCATTGACCATAGCGGAACTGACAAGCAAGCAGAAATCAACAGCAAAAACATGCAGGAAAGAGGGCACCAAATC
AAAACCAAACCAAACGAGCATTTTAAAAATCGCCCAACGCAGCATTGACCTCGATCCATGCCATTGCCCGGCCGCATCCA
ATTTTAATACAGCTCTCCCGCACTACCCGTACCCGTACATGGTATTCACTCCGCTA---GTCGTCTCCCCGTCTCGCTCC
CCGCAACATGCAAAGCGTTGACGTCCCCCTCGCAGCAACCTCCGTCCGCTGGATCCGAT--------CTCCTTCCCTTCG
AGCCCAAACAAAAACCCCACCAGACGATCAAGAATCGCTCTCCCCTCTCCACCACCACCATTCCACCAACGACTCGTAAC
CTTCACCTCTCCTAGGTCCT--AGCTAGCTAACCTCCGCTCGCTTCGGTCCGGCAGCGACGAACGCGACGTCGGGATGAA
CGCCGGTGCCCCGCCGGCGCCCGGCCGGTTCACCCCGGGCGACGGCACCTCCGTCGGCATGTTCAGCTCCGACCGCATCG
GCGGCTTCGGCTACGGTGTCGGCGTCTCCGTCGGCATCCTCCTCCTCATCACCACCATCACGCTCGCCTCCTACTTCTGC
ACCCGCGCGCCCCCGCCCGGCCCGGAGGCCGCCGCCGACGCGGAAGGGACGGCGCGGCGAAGGCGGCGCGCGCGGCGCCG
CGAGGGCGGCGGCGACAACGATGGCGGCGGGGGAGCCGGCGACGACGTCGACGTGGAGCTCGGCATCGACGAGGCCACGC
TCAAGGGGTACCCGGAGGTGGTTTACGGCGAGGCGCGGAGGAACAAGAACAGGAAGCTGGGCACCACCTGCACCTGCTGC
TCTGTGTGCCTCGACAACTACGGCGACGGCGACGTGCTCCGGATGCTGCCGGACTGCGGCCACCTGTTCCACCGGGAGTG
CGTCGACCCCTGGCTCCGGAAGCACCCGACCTGCCCCGTCTGCCGGACCTCGCCGCTGCCCAGCCCCTTGCCCACGCCGC
TCGCCGAGGTCACGCCGCTGGCCATGACGAGGCTGTCATCCTGACACCACACCGAGGTTCTTGCTTGGTTTTAATGTTCT
TAC------------CCTTTTTTTCTTAATTTGGAAAACTGGTATCGGTGGAAAAAAAATGGTCAGGTTAGG----AATT
AGAAGCTTCTTTTGTTGGTCTGGGTATAAATTTGGTTTAAGATTAGTTCACTTCTTCTGATGGAAATGCAAGTCTGCCTG
GCATTCTGTCCTG-------ATACAATTAGTTGAGAATTCGCCGATCAGAAGTTCAGAACATGTGCTCAAAGAAGGATGA
TTACTTGACATTAGCAAGCTGGGTGTAGTAGAATTGTAGATCTCTGTTCGGCAAACGATCAATGTCACAATGTAGAGTAG
GTTGT-TTGAATATACTGAATCAGATGGTGGGTTTCG-GCTCGAAATGTAAATGCATGCTCTCATTGTCA---TACTCTG
ATTCGTAAATGCAGCACACAAGTTCAGAATCAGCGCTTTCGGCGGATTCGA-TATTCTTGACTTCCAGTGTCAGCTACTA
GAACTTCGAACAGCGATAGTTCGGTATTCAATTTCAAACTCCTCCAGCAAGTTGATCAATTTACAATTCCGGCAACCCCC
CAAACTGAATCTTTAATATAATCTTGGACTCTAAGCAAGG-----TACATGCAGCCCCCTTCCCCCCAGGTTTGCAGGGT
CAATCATGCAAAAACCCGTAGTTTTCATTGTGCTTTGGAGTGACACGGACACCCATATGCGGCTTCATGTTCTACGAGAC
AAGATATAGAGCAAAATGACAGGCACCTTCGATTCCAGGGCACGCGACTTCTGCCTTGATCCGAACAAAACAATGACCGT
CCACGTGAAT-TTTAACTTATCTTTGTGCACCGATCTGCTGAGGACCTGGGAGCTCGTTGAATCGTAGGTACTAGTACTG
CATTGTGTTCAGTTTTTATCGGCTGCTGGAGAGAATCAGAGAAGAAAATGCCAGCTGATTTCATTTCAAACG---TATGG
ATGAAACACGGCAGAAAAATGGTA------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------
------------S-------------------------------------------------------------------
----------------------------------S---------------------------S--S---S----------
----S---S---------------SS-----------------------------------S------------------
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-------------------------------------------S------------------------------S-----
-----------------------------------------------------S------------------------S-
-------------SSSSS--SS----------------------------------------------------------
--------S-----------------------------------------------------------------------
-------------------------------------------------------------S------------------
-----------------------------------------S--S---S-S--------------S--------------
---------------------------------------S----------------------------------------
---------------------------------------------------S----------------------------
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--------SS-----S-------------------------------S------------------------------S-
----S---------------------------------------------------------------------------
-S-------S--------S------S----------------------------------S-------------------
-S----------------------------------------------S------S---------S--------------
S--------------------------------S----S------------------------S------SSS-------
-------------------------------------------S-------S----------------------------
-----SS-----------S-SSSSSSS-----------------S-----------------------------------
SS------------------------------------------------------------------------------
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-------------------------------------------------S------------------------------
----------S--S-SS--S-------------------------------------S-------------S--------
---------------S---S----------------S-------------------------S----S------------
-----------------------SSSSSSSSSSSSSSSSSSS
>forward_319
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-----------------------------------------------------------GACCTCGTGTTGGCTGAAGA-
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>reverse_1182
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-------------------------------------------------------------CCTCGCCTCCTACTTCTGC
A-------------------------------------------------------------------------------
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>forward_320
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------------------------------------------------------------ACCTCGTGTTGGCTGAAGAG
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>reverse_1850
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---------GCTGAATCCGGATACAGATGGT-------------------------------------------------
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