Multiple sequence alignment - TraesCS5B01G427700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G427700 chr5B 100.000 3836 0 0 1 3836 603884570 603880735 0.000000e+00 7084
1 TraesCS5B01G427700 chr5B 86.813 273 19 4 3577 3836 503315464 503315732 4.850000e-74 289
2 TraesCS5B01G427700 chr5B 88.406 207 24 0 3352 3558 324306667 324306873 2.290000e-62 250
3 TraesCS5B01G427700 chr5B 80.745 161 17 10 3205 3362 136622311 136622162 3.130000e-21 113
4 TraesCS5B01G427700 chrUn 87.562 2436 170 66 788 3175 68149180 68151530 0.000000e+00 2697
5 TraesCS5B01G427700 chrUn 93.090 796 41 8 3 789 68148335 68149125 0.000000e+00 1153
6 TraesCS5B01G427700 chr5A 85.364 2487 168 82 792 3175 611132719 611130326 0.000000e+00 2396
7 TraesCS5B01G427700 chr5A 90.525 781 45 14 3 780 611133583 611132829 0.000000e+00 1005
8 TraesCS5B01G427700 chr5A 87.845 181 7 8 3669 3836 496758478 496758300 8.410000e-47 198
9 TraesCS5B01G427700 chr5A 85.246 183 21 6 3175 3351 44285201 44285019 2.350000e-42 183
10 TraesCS5B01G427700 chr5A 92.157 102 8 0 3577 3678 496766957 496766856 1.110000e-30 145
11 TraesCS5B01G427700 chr3D 83.430 519 61 7 3342 3836 456108201 456108718 3.490000e-125 459
12 TraesCS5B01G427700 chr3D 90.909 154 13 1 3199 3351 255424397 255424550 5.020000e-49 206
13 TraesCS5B01G427700 chr3D 90.260 154 14 1 3199 3351 251410751 251410904 2.340000e-47 200
14 TraesCS5B01G427700 chr3D 89.241 158 16 1 3195 3351 295549587 295549430 3.020000e-46 196
15 TraesCS5B01G427700 chr1B 82.308 520 57 14 3350 3836 641844783 641844266 5.930000e-113 418
16 TraesCS5B01G427700 chr1B 87.356 174 19 3 3179 3351 582553732 582553903 3.020000e-46 196
17 TraesCS5B01G427700 chr7B 90.152 264 12 4 3586 3836 697486480 697486218 7.940000e-87 331
18 TraesCS5B01G427700 chr7B 88.415 164 17 2 3190 3351 174924572 174924409 3.020000e-46 196
19 TraesCS5B01G427700 chr1D 89.552 268 14 3 3582 3836 408156026 408156292 1.030000e-85 327
20 TraesCS5B01G427700 chr6A 89.051 274 14 5 3577 3836 129772449 129772720 3.700000e-85 326
21 TraesCS5B01G427700 chr6A 92.053 151 11 1 3202 3351 404354812 404354662 1.080000e-50 211
22 TraesCS5B01G427700 chr7A 89.051 274 13 8 3577 3836 639415733 639415463 1.330000e-84 324
23 TraesCS5B01G427700 chr6D 87.732 269 18 3 3582 3836 58442004 58442271 2.240000e-77 300
24 TraesCS5B01G427700 chr6D 84.477 277 23 6 3577 3836 455572290 455572017 4.920000e-64 255
25 TraesCS5B01G427700 chr6D 87.558 217 26 1 3351 3566 455572550 455572334 2.290000e-62 250
26 TraesCS5B01G427700 chr6D 85.714 182 20 6 3178 3355 461412705 461412884 1.820000e-43 187
27 TraesCS5B01G427700 chr6D 82.222 180 32 0 3346 3525 328956211 328956032 5.130000e-34 156
28 TraesCS5B01G427700 chr2B 88.550 262 8 3 3588 3828 243703442 243703182 8.060000e-77 298
29 TraesCS5B01G427700 chr7D 86.909 275 20 4 3577 3836 443327786 443327513 1.040000e-75 294
30 TraesCS5B01G427700 chr7D 86.347 271 23 9 3577 3836 121663210 121662943 2.260000e-72 283
31 TraesCS5B01G427700 chr7D 85.648 216 30 1 3352 3566 121663541 121663326 3.860000e-55 226
32 TraesCS5B01G427700 chr4D 85.874 269 22 5 3577 3830 175783083 175783350 4.880000e-69 272
33 TraesCS5B01G427700 chr4B 85.441 261 29 8 3577 3836 95703556 95703304 2.940000e-66 263
34 TraesCS5B01G427700 chr3B 87.615 218 24 3 3351 3566 41979137 41978921 2.290000e-62 250
35 TraesCS5B01G427700 chr3B 90.260 154 14 1 3199 3351 377115125 377115278 2.340000e-47 200
36 TraesCS5B01G427700 chr5D 85.088 228 33 1 3339 3566 209187025 209187251 8.290000e-57 231
37 TraesCS5B01G427700 chr5D 80.583 206 33 7 3347 3549 209188543 209188342 6.640000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G427700 chr5B 603880735 603884570 3835 True 7084.0 7084 100.0000 1 3836 1 chr5B.!!$R2 3835
1 TraesCS5B01G427700 chrUn 68148335 68151530 3195 False 1925.0 2697 90.3260 3 3175 2 chrUn.!!$F1 3172
2 TraesCS5B01G427700 chr5A 611130326 611133583 3257 True 1700.5 2396 87.9445 3 3175 2 chr5A.!!$R4 3172
3 TraesCS5B01G427700 chr3D 456108201 456108718 517 False 459.0 459 83.4300 3342 3836 1 chr3D.!!$F3 494
4 TraesCS5B01G427700 chr1B 641844266 641844783 517 True 418.0 418 82.3080 3350 3836 1 chr1B.!!$R1 486
5 TraesCS5B01G427700 chr6D 455572017 455572550 533 True 252.5 255 86.0175 3351 3836 2 chr6D.!!$R2 485
6 TraesCS5B01G427700 chr7D 121662943 121663541 598 True 254.5 283 85.9975 3352 3836 2 chr7D.!!$R2 484

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
819 949 0.404040 AAATCTTGGGCCCGTCAGAA 59.596 50.0 19.37 3.98 0.00 3.02 F
991 1130 0.806241 GAGGCGCCCGAAACAATTAA 59.194 50.0 26.15 0.00 0.00 1.40 F
1736 1921 0.468226 AGGCAACGAGTCCAGACAAA 59.532 50.0 0.00 0.00 46.39 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1666 1851 0.169009 GCTTAAACCTCGCCAAGCAG 59.831 55.0 0.0 0.0 42.31 4.24 R
2314 2526 0.242825 CAGAGTGGAAGAACGGCGTA 59.757 55.0 15.2 0.0 0.00 4.42 R
3246 3500 0.109723 TGAAAGGTTGGACGAAGGGG 59.890 55.0 0.0 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 5.774630 ACTACTCAGCAGTTCAGAAGTAAC 58.225 41.667 0.00 0.00 33.62 2.50
124 128 6.270231 AGTTCAGAAGTAACCTCCATACAAGT 59.730 38.462 0.00 0.00 0.00 3.16
147 151 1.415200 TTGTTTCCCCTTTTTCCCCG 58.585 50.000 0.00 0.00 0.00 5.73
196 200 0.817634 TTCCAACTTGTGCCTCGGTG 60.818 55.000 0.00 0.00 0.00 4.94
249 253 5.126067 ACTCACTTGCTACTGAAAATGTGT 58.874 37.500 0.00 0.00 0.00 3.72
254 258 3.343617 TGCTACTGAAAATGTGTAGGCC 58.656 45.455 0.00 0.00 35.51 5.19
286 290 3.313690 CAAACGGCAAGTGAATAAACCC 58.686 45.455 0.00 0.00 0.00 4.11
394 398 1.744741 GAGAGTTGAGCTGCAGGCC 60.745 63.158 17.12 0.00 43.05 5.19
415 419 1.000396 ACAAGCCATCTGAAGCCCC 60.000 57.895 0.00 0.00 0.00 5.80
466 470 1.061570 GCTGCGCTCTGTTACATGC 59.938 57.895 9.73 0.00 0.00 4.06
475 479 2.100216 GTTACATGCGCGGCCTTG 59.900 61.111 8.83 3.00 0.00 3.61
535 542 5.344743 TCTTAGCCATATAGGTATGCAGC 57.655 43.478 0.00 0.00 40.61 5.25
609 617 0.972983 GGTCAGCTGGTGCCTCTAGA 60.973 60.000 15.13 0.00 40.80 2.43
615 623 1.306141 TGGTGCCTCTAGACCTGGG 60.306 63.158 0.00 0.00 32.98 4.45
659 667 6.128282 TGTTGTATTTGTAGCTAAGAGCAAGC 60.128 38.462 0.00 0.00 45.56 4.01
806 936 5.766222 CTGCTGAGTTGCTTGTTAAATCTT 58.234 37.500 0.00 0.00 0.00 2.40
813 943 1.135112 GCTTGTTAAATCTTGGGCCCG 60.135 52.381 19.37 3.22 0.00 6.13
819 949 0.404040 AAATCTTGGGCCCGTCAGAA 59.596 50.000 19.37 3.98 0.00 3.02
919 1054 0.882927 TTCCGTTTCCTTGGCGTGAG 60.883 55.000 0.00 0.00 0.00 3.51
990 1129 1.363145 CGAGGCGCCCGAAACAATTA 61.363 55.000 26.15 0.00 0.00 1.40
991 1130 0.806241 GAGGCGCCCGAAACAATTAA 59.194 50.000 26.15 0.00 0.00 1.40
992 1131 1.404035 GAGGCGCCCGAAACAATTAAT 59.596 47.619 26.15 0.00 0.00 1.40
1069 1214 1.152839 CTCGTCCTCCTCCTCCTCC 60.153 68.421 0.00 0.00 0.00 4.30
1071 1216 2.284151 GTCCTCCTCCTCCTCCCC 59.716 72.222 0.00 0.00 0.00 4.81
1073 1218 4.548513 CCTCCTCCTCCTCCCCGG 62.549 77.778 0.00 0.00 0.00 5.73
1337 1489 1.347707 CAAAGCCCTGGTGAGTCAGTA 59.652 52.381 0.00 0.00 33.14 2.74
1440 1593 4.202223 TGCTCCTTATGACGAACCCTAATC 60.202 45.833 0.00 0.00 0.00 1.75
1446 1599 6.482308 CCTTATGACGAACCCTAATCGATTTT 59.518 38.462 17.19 4.07 42.76 1.82
1459 1612 1.548269 TCGATTTTCCCATTTGCACCC 59.452 47.619 0.00 0.00 0.00 4.61
1460 1613 1.274728 CGATTTTCCCATTTGCACCCA 59.725 47.619 0.00 0.00 0.00 4.51
1461 1614 2.674747 CGATTTTCCCATTTGCACCCAG 60.675 50.000 0.00 0.00 0.00 4.45
1462 1615 1.055040 TTTTCCCATTTGCACCCAGG 58.945 50.000 0.00 0.00 0.00 4.45
1463 1616 0.835543 TTTCCCATTTGCACCCAGGG 60.836 55.000 2.85 2.85 40.98 4.45
1501 1654 4.869297 TGTTTGGCACAAAGAATTGTCTTG 59.131 37.500 0.00 0.00 46.78 3.02
1505 1658 4.229876 GGCACAAAGAATTGTCTTGTAGC 58.770 43.478 0.00 0.92 46.78 3.58
1506 1659 4.022849 GGCACAAAGAATTGTCTTGTAGCT 60.023 41.667 0.00 0.00 46.78 3.32
1507 1660 5.181245 GGCACAAAGAATTGTCTTGTAGCTA 59.819 40.000 0.00 0.00 46.78 3.32
1508 1661 6.310197 GCACAAAGAATTGTCTTGTAGCTAG 58.690 40.000 0.00 0.00 46.78 3.42
1522 1680 6.874134 TCTTGTAGCTAGCTCCTTTTTACTTG 59.126 38.462 23.26 8.87 0.00 3.16
1559 1727 6.529463 AAATAAATCACAGTGCTTTGCAAC 57.471 33.333 11.84 0.00 41.47 4.17
1569 1737 5.049167 CAGTGCTTTGCAACCAAGAATTTA 58.951 37.500 0.00 0.00 41.47 1.40
1575 1743 6.662865 TTTGCAACCAAGAATTTAGGATGA 57.337 33.333 0.00 0.00 31.52 2.92
1580 1752 7.099120 GCAACCAAGAATTTAGGATGACAATT 58.901 34.615 6.31 0.00 0.00 2.32
1596 1768 4.051922 GACAATTATGCAGTACTCCCTCG 58.948 47.826 0.00 0.00 0.00 4.63
1600 1772 1.267121 ATGCAGTACTCCCTCGTTGT 58.733 50.000 0.00 0.00 0.00 3.32
1608 1780 3.277142 ACTCCCTCGTTGTCTTTTGTT 57.723 42.857 0.00 0.00 0.00 2.83
1609 1781 2.943033 ACTCCCTCGTTGTCTTTTGTTG 59.057 45.455 0.00 0.00 0.00 3.33
1610 1782 2.943033 CTCCCTCGTTGTCTTTTGTTGT 59.057 45.455 0.00 0.00 0.00 3.32
1611 1783 2.680841 TCCCTCGTTGTCTTTTGTTGTG 59.319 45.455 0.00 0.00 0.00 3.33
1612 1784 2.680841 CCCTCGTTGTCTTTTGTTGTGA 59.319 45.455 0.00 0.00 0.00 3.58
1613 1785 3.242739 CCCTCGTTGTCTTTTGTTGTGAG 60.243 47.826 0.00 0.00 0.00 3.51
1614 1786 3.621268 CCTCGTTGTCTTTTGTTGTGAGA 59.379 43.478 0.00 0.00 0.00 3.27
1631 1815 6.486253 TGTGAGAGAAGAAATTCAAATCGG 57.514 37.500 0.00 0.00 0.00 4.18
1636 1821 3.763897 AGAAGAAATTCAAATCGGTGGGG 59.236 43.478 0.00 0.00 0.00 4.96
1665 1850 4.516321 CACAAATCCATTGATGATCGCCTA 59.484 41.667 0.00 0.00 41.85 3.93
1666 1851 4.516698 ACAAATCCATTGATGATCGCCTAC 59.483 41.667 0.00 0.00 41.85 3.18
1669 1854 1.802960 CCATTGATGATCGCCTACTGC 59.197 52.381 0.00 0.00 0.00 4.40
1674 1859 0.533755 ATGATCGCCTACTGCTTGGC 60.534 55.000 0.00 0.00 45.25 4.52
1736 1921 0.468226 AGGCAACGAGTCCAGACAAA 59.532 50.000 0.00 0.00 46.39 2.83
1737 1922 0.868406 GGCAACGAGTCCAGACAAAG 59.132 55.000 0.00 0.00 0.00 2.77
1740 1925 1.222115 AACGAGTCCAGACAAAGCGC 61.222 55.000 0.00 0.00 0.00 5.92
1765 1950 2.575461 GTGCTTGGGCTCATTGGC 59.425 61.111 0.00 0.00 39.59 4.52
1789 1974 0.540133 GGAGGGAGGGTAGATCCGTC 60.540 65.000 6.21 6.21 46.36 4.79
1841 2027 1.074775 TGGCCCAACCTAAGTGCTG 59.925 57.895 0.00 0.00 40.22 4.41
1846 2032 1.480498 CCCAACCTAAGTGCTGGGTTT 60.480 52.381 0.00 0.00 43.15 3.27
1848 2034 2.306847 CAACCTAAGTGCTGGGTTTGT 58.693 47.619 6.98 0.00 40.83 2.83
1849 2035 2.693074 CAACCTAAGTGCTGGGTTTGTT 59.307 45.455 6.98 0.00 40.83 2.83
1850 2036 2.583143 ACCTAAGTGCTGGGTTTGTTC 58.417 47.619 0.00 0.00 0.00 3.18
1851 2037 2.174854 ACCTAAGTGCTGGGTTTGTTCT 59.825 45.455 0.00 0.00 0.00 3.01
1929 2115 3.010696 ACTCTGGAGAAATTTCCCCTTCC 59.989 47.826 18.44 16.25 36.35 3.46
1967 2153 5.335348 GCTCAGCCGTTTGGTTTTAAGATAA 60.335 40.000 0.00 0.00 37.67 1.75
1968 2154 6.249035 TCAGCCGTTTGGTTTTAAGATAAG 57.751 37.500 0.00 0.00 37.67 1.73
1970 2156 6.148811 TCAGCCGTTTGGTTTTAAGATAAGAG 59.851 38.462 0.00 0.00 37.67 2.85
1971 2157 6.002082 AGCCGTTTGGTTTTAAGATAAGAGT 58.998 36.000 0.00 0.00 37.67 3.24
1973 2159 7.118825 AGCCGTTTGGTTTTAAGATAAGAGTAC 59.881 37.037 0.00 0.00 37.67 2.73
1974 2160 7.118825 GCCGTTTGGTTTTAAGATAAGAGTACT 59.881 37.037 0.00 0.00 37.67 2.73
1975 2161 9.643693 CCGTTTGGTTTTAAGATAAGAGTACTA 57.356 33.333 0.00 0.00 0.00 1.82
2069 2263 7.817418 TTTTTCTTGCAAATACTGTACTCCT 57.183 32.000 0.00 0.00 0.00 3.69
2085 2284 2.093764 ACTCCTACTCAAGATGCTGCAC 60.094 50.000 3.57 0.00 0.00 4.57
2091 2290 3.418995 ACTCAAGATGCTGCACAAGAAT 58.581 40.909 3.57 0.00 0.00 2.40
2100 2299 3.822167 TGCTGCACAAGAATGATTTCAGA 59.178 39.130 0.00 0.00 34.08 3.27
2131 2330 7.990917 TGAAAACTTCAGCACACTGTAATTAA 58.009 30.769 0.00 0.00 44.77 1.40
2148 2347 1.448985 TAATTGCCGAGACAACCTGC 58.551 50.000 0.00 0.00 31.03 4.85
2158 2357 3.128764 CGAGACAACCTGCAGTAGATACA 59.871 47.826 13.81 0.00 0.00 2.29
2205 2405 9.163899 CAATAGCTTGCATAGTTCTATCATGAT 57.836 33.333 13.81 13.81 0.00 2.45
2207 2407 9.814899 ATAGCTTGCATAGTTCTATCATGATAC 57.185 33.333 11.49 5.19 0.00 2.24
2208 2408 6.810676 AGCTTGCATAGTTCTATCATGATACG 59.189 38.462 11.49 8.27 0.00 3.06
2326 2538 6.694411 TCATTAGTCTTAATACGCCGTTCTTC 59.306 38.462 0.00 0.00 0.00 2.87
2486 2701 2.046314 CTGGACCAAATCGCCGGT 60.046 61.111 1.90 0.00 38.56 5.28
2491 2706 1.762222 GACCAAATCGCCGGTGATCG 61.762 60.000 29.77 22.37 34.99 3.69
2493 2708 1.366111 CCAAATCGCCGGTGATCGTT 61.366 55.000 29.77 18.78 37.11 3.85
2502 2726 0.652592 CGGTGATCGTTTGCTCATCC 59.347 55.000 0.00 0.00 0.00 3.51
2508 2732 0.389817 TCGTTTGCTCATCCCTGACG 60.390 55.000 0.00 0.00 0.00 4.35
2510 2734 1.741401 TTTGCTCATCCCTGACGCG 60.741 57.895 3.53 3.53 31.91 6.01
2550 2775 2.594303 TTCCACAAGGGCACGCTG 60.594 61.111 0.00 0.00 36.21 5.18
2596 2821 3.838271 GCTCATCGTGCTCCGGGA 61.838 66.667 0.00 0.00 37.11 5.14
2598 2823 1.519455 CTCATCGTGCTCCGGGAAC 60.519 63.158 0.00 0.00 37.11 3.62
2657 2885 2.347490 GTCGAGCTGCAGGGGAAA 59.653 61.111 17.12 0.00 0.00 3.13
2685 2913 3.644606 CAGGTGGACTGCAGCCCT 61.645 66.667 20.60 13.96 40.97 5.19
2805 3033 1.257743 TCTCCAACCTCAAGGACTCG 58.742 55.000 2.30 0.00 38.94 4.18
2837 3065 3.122613 CAGTTCAGCAACTTCTTCTAGCG 59.877 47.826 0.00 0.00 41.24 4.26
2838 3066 1.714794 TCAGCAACTTCTTCTAGCGC 58.285 50.000 0.00 0.00 0.00 5.92
2855 3086 2.657296 CGTCGTGTGTGCTCGGTT 60.657 61.111 0.00 0.00 33.06 4.44
2863 3094 2.288025 TGTGCTCGGTTAGTCCCCC 61.288 63.158 0.00 0.00 0.00 5.40
2869 3100 1.379576 CGGTTAGTCCCCCTCGTCT 60.380 63.158 0.00 0.00 0.00 4.18
2872 3103 0.393537 GTTAGTCCCCCTCGTCTCGA 60.394 60.000 0.00 0.00 0.00 4.04
2883 3114 2.202676 GTCTCGAGCAGCTTCCGG 60.203 66.667 7.81 0.00 0.00 5.14
2898 3129 2.734723 CGGAGGCAGTCACACACG 60.735 66.667 0.00 0.00 0.00 4.49
2899 3130 2.421739 GGAGGCAGTCACACACGT 59.578 61.111 0.00 0.00 0.00 4.49
2901 3132 2.016704 GAGGCAGTCACACACGTCG 61.017 63.158 0.00 0.00 0.00 5.12
2902 3133 2.279252 GGCAGTCACACACGTCGT 60.279 61.111 0.00 0.00 0.00 4.34
2903 3134 1.008194 GGCAGTCACACACGTCGTA 60.008 57.895 0.00 0.00 0.00 3.43
2904 3135 1.273455 GGCAGTCACACACGTCGTAC 61.273 60.000 0.00 0.00 0.00 3.67
2905 3136 1.273455 GCAGTCACACACGTCGTACC 61.273 60.000 0.00 0.00 0.00 3.34
2906 3137 0.029700 CAGTCACACACGTCGTACCA 59.970 55.000 0.00 0.00 0.00 3.25
2908 3139 2.095617 CAGTCACACACGTCGTACCATA 60.096 50.000 0.00 0.00 0.00 2.74
2909 3140 2.161012 AGTCACACACGTCGTACCATAG 59.839 50.000 0.00 0.00 0.00 2.23
2910 3141 1.135603 TCACACACGTCGTACCATAGC 60.136 52.381 0.00 0.00 0.00 2.97
2911 3142 0.179181 ACACACGTCGTACCATAGCG 60.179 55.000 0.00 0.00 0.00 4.26
2912 3143 0.179181 CACACGTCGTACCATAGCGT 60.179 55.000 0.00 0.00 36.13 5.07
2913 3144 0.097674 ACACGTCGTACCATAGCGTC 59.902 55.000 0.00 0.00 33.28 5.19
2914 3145 0.922560 CACGTCGTACCATAGCGTCG 60.923 60.000 0.00 0.00 42.93 5.12
2915 3146 1.349627 CGTCGTACCATAGCGTCGT 59.650 57.895 0.00 0.00 35.65 4.34
2917 3148 0.374758 GTCGTACCATAGCGTCGTCA 59.625 55.000 0.00 0.00 0.00 4.35
2918 3149 0.374758 TCGTACCATAGCGTCGTCAC 59.625 55.000 0.00 0.00 0.00 3.67
2941 3176 1.533756 CCGTGTGCTGTTTGTTCAAGG 60.534 52.381 0.00 0.00 0.00 3.61
2943 3178 2.353269 CGTGTGCTGTTTGTTCAAGGTA 59.647 45.455 0.00 0.00 0.00 3.08
2947 3182 3.250040 GTGCTGTTTGTTCAAGGTATCGT 59.750 43.478 0.00 0.00 0.00 3.73
2949 3184 3.364964 GCTGTTTGTTCAAGGTATCGTGG 60.365 47.826 0.00 0.00 0.00 4.94
2953 3188 5.640357 TGTTTGTTCAAGGTATCGTGGTATC 59.360 40.000 0.00 0.00 0.00 2.24
2954 3189 4.036567 TGTTCAAGGTATCGTGGTATCG 57.963 45.455 0.00 0.00 0.00 2.92
2956 3191 3.976793 TCAAGGTATCGTGGTATCGTC 57.023 47.619 0.00 0.00 0.00 4.20
2957 3192 2.288729 TCAAGGTATCGTGGTATCGTCG 59.711 50.000 0.00 0.00 0.00 5.12
2958 3193 1.959042 AGGTATCGTGGTATCGTCGT 58.041 50.000 0.00 0.00 0.00 4.34
2959 3194 1.600957 AGGTATCGTGGTATCGTCGTG 59.399 52.381 0.00 0.00 0.00 4.35
2960 3195 1.331756 GGTATCGTGGTATCGTCGTGT 59.668 52.381 0.00 0.00 0.00 4.49
2962 3197 1.089112 ATCGTGGTATCGTCGTGTCA 58.911 50.000 0.00 0.00 0.00 3.58
2963 3198 0.166597 TCGTGGTATCGTCGTGTCAC 59.833 55.000 0.00 0.00 0.00 3.67
2965 3200 1.400629 CGTGGTATCGTCGTGTCACTT 60.401 52.381 0.65 0.00 0.00 3.16
2966 3201 1.983605 GTGGTATCGTCGTGTCACTTG 59.016 52.381 0.65 0.00 0.00 3.16
2967 3202 1.610038 TGGTATCGTCGTGTCACTTGT 59.390 47.619 0.65 0.00 0.00 3.16
2968 3203 1.983605 GGTATCGTCGTGTCACTTGTG 59.016 52.381 0.65 0.00 0.00 3.33
2969 3204 2.606308 GGTATCGTCGTGTCACTTGTGT 60.606 50.000 0.65 0.00 0.00 3.72
2970 3205 3.365264 GGTATCGTCGTGTCACTTGTGTA 60.365 47.826 0.65 0.00 0.00 2.90
2971 3206 2.847959 TCGTCGTGTCACTTGTGTAA 57.152 45.000 0.65 0.00 0.00 2.41
2972 3207 2.453080 TCGTCGTGTCACTTGTGTAAC 58.547 47.619 0.65 0.66 37.35 2.50
3007 3256 7.588497 TGTATATCGATTATCCAGCTGCTAT 57.412 36.000 8.66 6.61 0.00 2.97
3021 3270 5.043903 CAGCTGCTATGTACACTCGTTAAT 58.956 41.667 0.00 0.00 0.00 1.40
3030 3279 7.591006 ATGTACACTCGTTAATTGTTAGGTG 57.409 36.000 0.00 0.00 0.00 4.00
3033 3282 7.809331 TGTACACTCGTTAATTGTTAGGTGTAG 59.191 37.037 12.41 0.00 38.83 2.74
3034 3283 6.752168 ACACTCGTTAATTGTTAGGTGTAGT 58.248 36.000 0.00 0.00 35.36 2.73
3035 3284 6.865205 ACACTCGTTAATTGTTAGGTGTAGTC 59.135 38.462 0.00 0.00 35.36 2.59
3036 3285 6.033196 CACTCGTTAATTGTTAGGTGTAGTCG 59.967 42.308 0.00 0.00 0.00 4.18
3046 3295 5.750547 TGTTAGGTGTAGTCGTATAGAGACG 59.249 44.000 3.47 0.00 42.97 4.18
3057 3306 6.702972 TCGTATAGAGACGATGTAAGCTAC 57.297 41.667 0.00 0.00 46.43 3.58
3058 3307 5.344396 TCGTATAGAGACGATGTAAGCTACG 59.656 44.000 0.00 0.00 46.43 3.51
3059 3308 2.759538 AGAGACGATGTAAGCTACGC 57.240 50.000 0.00 0.00 0.00 4.42
3127 3381 5.129485 TGGGATTTGTGTATTTTTGTGGTGT 59.871 36.000 0.00 0.00 0.00 4.16
3128 3382 5.694458 GGGATTTGTGTATTTTTGTGGTGTC 59.306 40.000 0.00 0.00 0.00 3.67
3129 3383 5.401079 GGATTTGTGTATTTTTGTGGTGTCG 59.599 40.000 0.00 0.00 0.00 4.35
3143 3397 1.001597 GGTGTCGGTATGGACGAGATC 60.002 57.143 0.00 0.00 41.50 2.75
3164 3418 5.839262 TCGTAGTTTGAAACTAGCACATG 57.161 39.130 17.37 4.57 44.16 3.21
3175 3429 4.617253 ACTAGCACATGGTTTGACTGTA 57.383 40.909 0.00 0.00 0.00 2.74
3176 3430 4.968259 ACTAGCACATGGTTTGACTGTAA 58.032 39.130 0.00 0.00 0.00 2.41
3177 3431 4.755123 ACTAGCACATGGTTTGACTGTAAC 59.245 41.667 0.00 0.00 0.00 2.50
3178 3432 3.820557 AGCACATGGTTTGACTGTAACT 58.179 40.909 0.00 0.00 0.00 2.24
3179 3433 4.968259 AGCACATGGTTTGACTGTAACTA 58.032 39.130 0.00 0.00 0.00 2.24
3180 3434 5.560724 AGCACATGGTTTGACTGTAACTAT 58.439 37.500 0.00 0.00 0.00 2.12
3181 3435 5.643777 AGCACATGGTTTGACTGTAACTATC 59.356 40.000 0.00 0.00 0.00 2.08
3182 3436 5.643777 GCACATGGTTTGACTGTAACTATCT 59.356 40.000 0.00 0.00 0.00 1.98
3183 3437 6.183360 GCACATGGTTTGACTGTAACTATCTC 60.183 42.308 0.00 0.00 0.00 2.75
3184 3438 7.099764 CACATGGTTTGACTGTAACTATCTCT 58.900 38.462 0.00 0.00 0.00 3.10
3185 3439 8.251026 CACATGGTTTGACTGTAACTATCTCTA 58.749 37.037 0.00 0.00 0.00 2.43
3186 3440 8.470805 ACATGGTTTGACTGTAACTATCTCTAG 58.529 37.037 0.00 0.00 0.00 2.43
3187 3441 8.470805 CATGGTTTGACTGTAACTATCTCTAGT 58.529 37.037 0.00 0.00 39.97 2.57
3188 3442 9.696572 ATGGTTTGACTGTAACTATCTCTAGTA 57.303 33.333 0.00 0.00 37.20 1.82
3189 3443 9.524496 TGGTTTGACTGTAACTATCTCTAGTAA 57.476 33.333 0.00 0.00 37.20 2.24
3232 3486 6.393720 AAAATGTAATGTTCGCATTTCAGC 57.606 33.333 0.00 0.00 44.77 4.26
3233 3487 4.970662 ATGTAATGTTCGCATTTCAGCT 57.029 36.364 0.00 0.00 44.77 4.24
3234 3488 4.764679 TGTAATGTTCGCATTTCAGCTT 57.235 36.364 0.00 0.00 44.77 3.74
3235 3489 4.722194 TGTAATGTTCGCATTTCAGCTTC 58.278 39.130 0.00 0.00 44.77 3.86
3236 3490 2.927553 ATGTTCGCATTTCAGCTTCC 57.072 45.000 0.00 0.00 33.21 3.46
3237 3491 1.896220 TGTTCGCATTTCAGCTTCCT 58.104 45.000 0.00 0.00 0.00 3.36
3238 3492 2.229792 TGTTCGCATTTCAGCTTCCTT 58.770 42.857 0.00 0.00 0.00 3.36
3239 3493 2.226437 TGTTCGCATTTCAGCTTCCTTC 59.774 45.455 0.00 0.00 0.00 3.46
3240 3494 1.453155 TCGCATTTCAGCTTCCTTCC 58.547 50.000 0.00 0.00 0.00 3.46
3241 3495 0.453390 CGCATTTCAGCTTCCTTCCC 59.547 55.000 0.00 0.00 0.00 3.97
3242 3496 1.549203 GCATTTCAGCTTCCTTCCCA 58.451 50.000 0.00 0.00 0.00 4.37
3243 3497 1.203287 GCATTTCAGCTTCCTTCCCAC 59.797 52.381 0.00 0.00 0.00 4.61
3244 3498 1.821136 CATTTCAGCTTCCTTCCCACC 59.179 52.381 0.00 0.00 0.00 4.61
3245 3499 0.850100 TTTCAGCTTCCTTCCCACCA 59.150 50.000 0.00 0.00 0.00 4.17
3246 3500 0.110486 TTCAGCTTCCTTCCCACCAC 59.890 55.000 0.00 0.00 0.00 4.16
3247 3501 1.303643 CAGCTTCCTTCCCACCACC 60.304 63.158 0.00 0.00 0.00 4.61
3248 3502 2.035783 GCTTCCTTCCCACCACCC 59.964 66.667 0.00 0.00 0.00 4.61
3249 3503 2.763902 CTTCCTTCCCACCACCCC 59.236 66.667 0.00 0.00 0.00 4.95
3250 3504 1.852626 CTTCCTTCCCACCACCCCT 60.853 63.158 0.00 0.00 0.00 4.79
3251 3505 1.388217 TTCCTTCCCACCACCCCTT 60.388 57.895 0.00 0.00 0.00 3.95
3252 3506 1.432023 TTCCTTCCCACCACCCCTTC 61.432 60.000 0.00 0.00 0.00 3.46
3253 3507 2.351276 CTTCCCACCACCCCTTCG 59.649 66.667 0.00 0.00 0.00 3.79
3254 3508 2.448931 TTCCCACCACCCCTTCGT 60.449 61.111 0.00 0.00 0.00 3.85
3255 3509 2.465055 CTTCCCACCACCCCTTCGTC 62.465 65.000 0.00 0.00 0.00 4.20
3256 3510 4.029809 CCCACCACCCCTTCGTCC 62.030 72.222 0.00 0.00 0.00 4.79
3257 3511 3.246112 CCACCACCCCTTCGTCCA 61.246 66.667 0.00 0.00 0.00 4.02
3258 3512 2.824880 CCACCACCCCTTCGTCCAA 61.825 63.158 0.00 0.00 0.00 3.53
3259 3513 1.599797 CACCACCCCTTCGTCCAAC 60.600 63.158 0.00 0.00 0.00 3.77
3260 3514 2.033602 CCACCCCTTCGTCCAACC 59.966 66.667 0.00 0.00 0.00 3.77
3261 3515 2.526046 CCACCCCTTCGTCCAACCT 61.526 63.158 0.00 0.00 0.00 3.50
3262 3516 1.454539 CACCCCTTCGTCCAACCTT 59.545 57.895 0.00 0.00 0.00 3.50
3263 3517 0.179001 CACCCCTTCGTCCAACCTTT 60.179 55.000 0.00 0.00 0.00 3.11
3264 3518 0.109913 ACCCCTTCGTCCAACCTTTC 59.890 55.000 0.00 0.00 0.00 2.62
3265 3519 0.109723 CCCCTTCGTCCAACCTTTCA 59.890 55.000 0.00 0.00 0.00 2.69
3266 3520 1.271926 CCCCTTCGTCCAACCTTTCAT 60.272 52.381 0.00 0.00 0.00 2.57
3267 3521 1.812571 CCCTTCGTCCAACCTTTCATG 59.187 52.381 0.00 0.00 0.00 3.07
3268 3522 2.504367 CCTTCGTCCAACCTTTCATGT 58.496 47.619 0.00 0.00 0.00 3.21
3269 3523 3.558321 CCCTTCGTCCAACCTTTCATGTA 60.558 47.826 0.00 0.00 0.00 2.29
3270 3524 4.261801 CCTTCGTCCAACCTTTCATGTAT 58.738 43.478 0.00 0.00 0.00 2.29
3271 3525 5.424757 CCTTCGTCCAACCTTTCATGTATA 58.575 41.667 0.00 0.00 0.00 1.47
3272 3526 6.055588 CCTTCGTCCAACCTTTCATGTATAT 58.944 40.000 0.00 0.00 0.00 0.86
3273 3527 6.017934 CCTTCGTCCAACCTTTCATGTATATG 60.018 42.308 0.00 0.00 35.57 1.78
3274 3528 6.228616 TCGTCCAACCTTTCATGTATATGA 57.771 37.500 0.00 0.00 41.44 2.15
3275 3529 6.046593 TCGTCCAACCTTTCATGTATATGAC 58.953 40.000 1.03 0.00 42.79 3.06
3276 3530 5.815222 CGTCCAACCTTTCATGTATATGACA 59.185 40.000 1.03 0.00 42.79 3.58
3277 3531 6.315144 CGTCCAACCTTTCATGTATATGACAA 59.685 38.462 1.03 0.42 42.79 3.18
3278 3532 7.012327 CGTCCAACCTTTCATGTATATGACAAT 59.988 37.037 1.03 0.00 42.79 2.71
3279 3533 8.345565 GTCCAACCTTTCATGTATATGACAATC 58.654 37.037 1.03 0.00 42.79 2.67
3280 3534 8.052141 TCCAACCTTTCATGTATATGACAATCA 58.948 33.333 1.03 0.00 42.79 2.57
3281 3535 8.685427 CCAACCTTTCATGTATATGACAATCAA 58.315 33.333 1.03 0.00 42.79 2.57
3282 3536 9.507280 CAACCTTTCATGTATATGACAATCAAC 57.493 33.333 1.03 0.00 42.79 3.18
3283 3537 8.225603 ACCTTTCATGTATATGACAATCAACC 57.774 34.615 1.03 0.00 42.79 3.77
3284 3538 7.833682 ACCTTTCATGTATATGACAATCAACCA 59.166 33.333 1.03 0.00 42.79 3.67
3285 3539 8.131100 CCTTTCATGTATATGACAATCAACCAC 58.869 37.037 1.03 0.00 42.79 4.16
3286 3540 8.572855 TTTCATGTATATGACAATCAACCACA 57.427 30.769 1.03 0.00 42.79 4.17
3287 3541 8.750515 TTCATGTATATGACAATCAACCACAT 57.249 30.769 1.03 0.00 42.79 3.21
3288 3542 8.750515 TCATGTATATGACAATCAACCACATT 57.249 30.769 0.00 0.00 42.78 2.71
3289 3543 9.844257 TCATGTATATGACAATCAACCACATTA 57.156 29.630 0.00 0.00 42.78 1.90
3304 3558 9.802039 TCAACCACATTAATTTACTTACCTTCT 57.198 29.630 0.00 0.00 0.00 2.85
3305 3559 9.840427 CAACCACATTAATTTACTTACCTTCTG 57.160 33.333 0.00 0.00 0.00 3.02
3306 3560 9.802039 AACCACATTAATTTACTTACCTTCTGA 57.198 29.630 0.00 0.00 0.00 3.27
3307 3561 9.802039 ACCACATTAATTTACTTACCTTCTGAA 57.198 29.630 0.00 0.00 0.00 3.02
3310 3564 9.802039 ACATTAATTTACTTACCTTCTGAACCA 57.198 29.630 0.00 0.00 0.00 3.67
3315 3569 6.569179 TTACTTACCTTCTGAACCAATTGC 57.431 37.500 0.00 0.00 0.00 3.56
3316 3570 4.469657 ACTTACCTTCTGAACCAATTGCA 58.530 39.130 0.00 0.00 0.00 4.08
3317 3571 4.278419 ACTTACCTTCTGAACCAATTGCAC 59.722 41.667 0.00 0.00 0.00 4.57
3318 3572 2.949447 ACCTTCTGAACCAATTGCACT 58.051 42.857 0.00 0.00 0.00 4.40
3319 3573 3.299503 ACCTTCTGAACCAATTGCACTT 58.700 40.909 0.00 0.00 0.00 3.16
3320 3574 3.706086 ACCTTCTGAACCAATTGCACTTT 59.294 39.130 0.00 0.00 0.00 2.66
3321 3575 4.892934 ACCTTCTGAACCAATTGCACTTTA 59.107 37.500 0.00 0.00 0.00 1.85
3322 3576 5.362430 ACCTTCTGAACCAATTGCACTTTAA 59.638 36.000 0.00 0.00 0.00 1.52
3323 3577 6.041979 ACCTTCTGAACCAATTGCACTTTAAT 59.958 34.615 0.00 0.00 0.00 1.40
3324 3578 6.930722 CCTTCTGAACCAATTGCACTTTAATT 59.069 34.615 0.00 0.00 0.00 1.40
3325 3579 7.442062 CCTTCTGAACCAATTGCACTTTAATTT 59.558 33.333 0.00 0.00 0.00 1.82
3326 3580 9.474920 CTTCTGAACCAATTGCACTTTAATTTA 57.525 29.630 0.00 0.00 0.00 1.40
3327 3581 8.810652 TCTGAACCAATTGCACTTTAATTTAC 57.189 30.769 0.00 0.00 0.00 2.01
3328 3582 8.637986 TCTGAACCAATTGCACTTTAATTTACT 58.362 29.630 0.00 0.00 0.00 2.24
3329 3583 9.260002 CTGAACCAATTGCACTTTAATTTACTT 57.740 29.630 0.00 0.00 0.00 2.24
3332 3586 9.483916 AACCAATTGCACTTTAATTTACTTACC 57.516 29.630 0.00 0.00 0.00 2.85
3333 3587 8.643324 ACCAATTGCACTTTAATTTACTTACCA 58.357 29.630 0.00 0.00 0.00 3.25
3334 3588 9.482627 CCAATTGCACTTTAATTTACTTACCAA 57.517 29.630 0.00 0.00 0.00 3.67
3339 3593 9.738832 TGCACTTTAATTTACTTACCAAACTTC 57.261 29.630 0.00 0.00 0.00 3.01
3340 3594 9.961265 GCACTTTAATTTACTTACCAAACTTCT 57.039 29.630 0.00 0.00 0.00 2.85
3375 3629 4.091365 GGTTTTTATCAGTTTTGCCATCGC 59.909 41.667 0.00 0.00 0.00 4.58
3396 3650 5.240183 TCGCTTGTACTACACTACTCAGTTT 59.760 40.000 0.00 0.00 30.46 2.66
3402 3656 5.228945 ACTACACTACTCAGTTTTGCCAT 57.771 39.130 0.00 0.00 30.46 4.40
3408 3662 7.777095 ACACTACTCAGTTTTGCCATTAAAAA 58.223 30.769 0.00 0.00 31.92 1.94
3441 3695 3.862267 TCAAAAATGCCACTGTTTCGTTG 59.138 39.130 0.00 0.00 0.00 4.10
3443 3697 1.686355 AATGCCACTGTTTCGTTGGA 58.314 45.000 0.00 0.00 0.00 3.53
3446 3700 1.433837 GCCACTGTTTCGTTGGACGT 61.434 55.000 0.00 0.00 43.14 4.34
3451 3705 1.000884 TGTTTCGTTGGACGTGTGTC 58.999 50.000 0.00 0.00 43.14 3.67
3482 3737 7.630242 AGTCATTTTTCATCATTACCGTCAT 57.370 32.000 0.00 0.00 0.00 3.06
3488 3743 6.809630 TTTCATCATTACCGTCATGTCAAA 57.190 33.333 0.00 0.00 0.00 2.69
3491 3746 3.006940 TCATTACCGTCATGTCAAAGGC 58.993 45.455 0.00 0.00 0.00 4.35
3566 3822 2.092429 TCTCTTTGTTTGAGCTGTGGGT 60.092 45.455 0.00 0.00 0.00 4.51
3568 3824 1.002468 CTTTGTTTGAGCTGTGGGTCG 60.002 52.381 0.00 0.00 42.30 4.79
3569 3825 0.817634 TTGTTTGAGCTGTGGGTCGG 60.818 55.000 0.00 0.00 42.30 4.79
3570 3826 1.966451 GTTTGAGCTGTGGGTCGGG 60.966 63.158 0.00 0.00 42.30 5.14
3571 3827 3.190738 TTTGAGCTGTGGGTCGGGG 62.191 63.158 0.00 0.00 42.30 5.73
3596 3957 1.303091 CCACGGGATTTCGAACCCAC 61.303 60.000 20.50 6.43 45.83 4.61
3649 4010 3.055094 CCAGCTGAGCTAAGGGAAAGTTA 60.055 47.826 17.39 0.00 36.40 2.24
3653 4014 5.045578 AGCTGAGCTAAGGGAAAGTTATGAA 60.046 40.000 4.49 0.00 36.99 2.57
3665 4026 9.997172 AGGGAAAGTTATGAAATAGAAGGAAAT 57.003 29.630 0.00 0.00 0.00 2.17
3722 4098 5.551760 AACCTATCATTTCTTGTTGCTCG 57.448 39.130 0.00 0.00 0.00 5.03
3771 4147 5.806366 TCATGCATCACACACTAATTGAG 57.194 39.130 0.00 0.00 0.00 3.02
3797 4173 5.973565 GCAACAACAAATATGATAGCAGGAC 59.026 40.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 7.617041 AAACTTATGCTAGACAAGGACATTC 57.383 36.000 0.00 0.00 0.00 2.67
124 128 3.054287 GGGGAAAAAGGGGAAACAAACAA 60.054 43.478 0.00 0.00 0.00 2.83
134 138 0.470341 TTTTTGCGGGGAAAAAGGGG 59.530 50.000 6.72 0.00 32.36 4.79
155 159 6.420903 GGAACAGGAAACAAACAGCTTTTATC 59.579 38.462 0.00 0.00 0.00 1.75
196 200 4.493057 GGACGCTTTAAGCAACCGTAATAC 60.493 45.833 17.51 0.00 42.58 1.89
216 220 4.642885 AGTAGCAAGTGAGTCTATCTGGAC 59.357 45.833 0.00 0.00 36.56 4.02
311 315 4.821589 CGCTGGGGAGTCTTCGGC 62.822 72.222 6.90 6.90 0.00 5.54
394 398 1.093159 GGCTTCAGATGGCTTGTCAG 58.907 55.000 2.77 0.00 0.00 3.51
415 419 0.815734 ACCTTGACGACGGTAGATGG 59.184 55.000 0.00 0.00 0.00 3.51
459 463 2.884997 ATCCAAGGCCGCGCATGTAA 62.885 55.000 8.75 0.00 0.00 2.41
466 470 3.204827 CCAGAATCCAAGGCCGCG 61.205 66.667 0.00 0.00 0.00 6.46
497 501 5.887598 TGGCTAAGAAATAGATGCACATTGT 59.112 36.000 0.00 0.00 33.04 2.71
508 512 9.539825 CTGCATACCTATATGGCTAAGAAATAG 57.460 37.037 0.00 0.00 38.97 1.73
615 623 4.482952 ACAGTACAAGCTATGGTAACCC 57.517 45.455 0.00 0.00 0.00 4.11
659 667 4.763793 AGTTCCAGAAAATGTGAGTCCATG 59.236 41.667 0.00 0.00 0.00 3.66
806 936 0.893270 CATTTGTTCTGACGGGCCCA 60.893 55.000 24.92 0.00 0.00 5.36
813 943 1.200020 CCGAAGCCCATTTGTTCTGAC 59.800 52.381 0.00 0.00 0.00 3.51
919 1054 1.749609 GATGACGGTTTCGCTACGGC 61.750 60.000 0.00 0.00 40.63 5.68
1049 1188 1.619975 AGGAGGAGGAGGACGAGGA 60.620 63.158 0.00 0.00 0.00 3.71
1351 1503 1.078567 GGCTTGAGGAGGTGCAGAG 60.079 63.158 0.00 0.00 0.00 3.35
1352 1504 1.130054 AAGGCTTGAGGAGGTGCAGA 61.130 55.000 0.00 0.00 0.00 4.26
1423 1576 6.480981 GGAAAATCGATTAGGGTTCGTCATAA 59.519 38.462 11.83 0.00 37.82 1.90
1440 1593 1.274728 TGGGTGCAAATGGGAAAATCG 59.725 47.619 0.00 0.00 0.00 3.34
1446 1599 2.444696 CCCTGGGTGCAAATGGGA 59.555 61.111 3.97 0.00 40.23 4.37
1459 1612 3.589542 TTGGTTCCCCTGGCCCTG 61.590 66.667 0.00 0.00 0.00 4.45
1460 1613 3.590574 GTTGGTTCCCCTGGCCCT 61.591 66.667 0.00 0.00 0.00 5.19
1461 1614 3.590574 AGTTGGTTCCCCTGGCCC 61.591 66.667 0.00 0.00 0.00 5.80
1462 1615 2.283173 CAGTTGGTTCCCCTGGCC 60.283 66.667 0.00 0.00 0.00 5.36
1463 1616 0.759060 AAACAGTTGGTTCCCCTGGC 60.759 55.000 9.36 0.00 39.29 4.85
1477 1630 4.685924 AGACAATTCTTTGTGCCAAACAG 58.314 39.130 0.00 0.00 46.01 3.16
1501 1654 6.874664 AGAACAAGTAAAAAGGAGCTAGCTAC 59.125 38.462 20.10 20.10 0.00 3.58
1559 1727 8.415553 TGCATAATTGTCATCCTAAATTCTTGG 58.584 33.333 0.00 0.00 0.00 3.61
1569 1737 5.455326 GGGAGTACTGCATAATTGTCATCCT 60.455 44.000 16.81 0.00 0.00 3.24
1575 1743 3.451178 ACGAGGGAGTACTGCATAATTGT 59.549 43.478 16.81 6.05 0.00 2.71
1580 1752 2.426024 GACAACGAGGGAGTACTGCATA 59.574 50.000 16.81 0.00 0.00 3.14
1596 1768 6.422776 TCTTCTCTCACAACAAAAGACAAC 57.577 37.500 0.00 0.00 0.00 3.32
1600 1772 8.279970 TGAATTTCTTCTCTCACAACAAAAGA 57.720 30.769 0.00 0.00 32.29 2.52
1608 1780 5.997746 ACCGATTTGAATTTCTTCTCTCACA 59.002 36.000 0.00 0.00 32.29 3.58
1609 1781 6.310197 CACCGATTTGAATTTCTTCTCTCAC 58.690 40.000 0.00 0.00 32.29 3.51
1610 1782 5.412594 CCACCGATTTGAATTTCTTCTCTCA 59.587 40.000 0.00 0.00 32.29 3.27
1611 1783 5.163713 CCCACCGATTTGAATTTCTTCTCTC 60.164 44.000 0.00 0.00 32.29 3.20
1612 1784 4.702131 CCCACCGATTTGAATTTCTTCTCT 59.298 41.667 0.00 0.00 32.29 3.10
1613 1785 4.142381 CCCCACCGATTTGAATTTCTTCTC 60.142 45.833 0.00 0.00 32.29 2.87
1614 1786 3.763897 CCCCACCGATTTGAATTTCTTCT 59.236 43.478 0.00 0.00 32.29 2.85
1631 1815 1.250840 GGATTTGTGAGGTGCCCCAC 61.251 60.000 0.00 0.00 0.00 4.61
1636 1821 3.444742 TCATCAATGGATTTGTGAGGTGC 59.555 43.478 0.00 0.00 36.65 5.01
1665 1850 1.523758 CTTAAACCTCGCCAAGCAGT 58.476 50.000 0.00 0.00 0.00 4.40
1666 1851 0.169009 GCTTAAACCTCGCCAAGCAG 59.831 55.000 0.00 0.00 42.31 4.24
1696 1881 2.431683 GGGCAGTGTCCAGCTCAA 59.568 61.111 9.48 0.00 0.00 3.02
1697 1882 3.640407 GGGGCAGTGTCCAGCTCA 61.640 66.667 17.31 0.00 31.24 4.26
1724 1909 1.294659 CTGGCGCTTTGTCTGGACTC 61.295 60.000 7.64 0.00 0.00 3.36
1725 1910 1.302033 CTGGCGCTTTGTCTGGACT 60.302 57.895 7.64 0.00 0.00 3.85
1746 1931 2.180017 CAATGAGCCCAAGCACGC 59.820 61.111 0.00 0.00 43.56 5.34
1765 1950 0.778720 ATCTACCCTCCCTCCTACGG 59.221 60.000 0.00 0.00 0.00 4.02
1766 1951 1.272037 GGATCTACCCTCCCTCCTACG 60.272 61.905 0.00 0.00 0.00 3.51
1767 1952 1.272037 CGGATCTACCCTCCCTCCTAC 60.272 61.905 0.00 0.00 34.64 3.18
1768 1953 1.073931 CGGATCTACCCTCCCTCCTA 58.926 60.000 0.00 0.00 34.64 2.94
1769 1954 1.000041 ACGGATCTACCCTCCCTCCT 61.000 60.000 0.00 0.00 34.64 3.69
1770 1955 0.540133 GACGGATCTACCCTCCCTCC 60.540 65.000 0.00 0.00 34.64 4.30
1771 1956 0.890090 CGACGGATCTACCCTCCCTC 60.890 65.000 0.00 0.00 34.64 4.30
1772 1957 1.150992 CGACGGATCTACCCTCCCT 59.849 63.158 0.00 0.00 34.64 4.20
1773 1958 0.251253 ATCGACGGATCTACCCTCCC 60.251 60.000 0.00 0.00 34.64 4.30
1789 1974 2.026734 ATGTCGAGAGCGCCATCG 59.973 61.111 21.92 21.92 40.26 3.84
1790 1975 2.593134 GCATGTCGAGAGCGCCATC 61.593 63.158 2.29 0.56 37.46 3.51
1841 2027 5.106436 CCGACCAAGTAATAAGAACAAACCC 60.106 44.000 0.00 0.00 0.00 4.11
1846 2032 3.998341 GCACCGACCAAGTAATAAGAACA 59.002 43.478 0.00 0.00 0.00 3.18
1848 2034 4.274602 TGCACCGACCAAGTAATAAGAA 57.725 40.909 0.00 0.00 0.00 2.52
1849 2035 3.965379 TGCACCGACCAAGTAATAAGA 57.035 42.857 0.00 0.00 0.00 2.10
1850 2036 4.876107 AGATTGCACCGACCAAGTAATAAG 59.124 41.667 0.00 0.00 0.00 1.73
1851 2037 4.839121 AGATTGCACCGACCAAGTAATAA 58.161 39.130 0.00 0.00 0.00 1.40
1929 2115 2.360165 GGCTGAGCCCAATCAATTAGTG 59.640 50.000 13.77 0.00 44.06 2.74
1956 2142 9.478768 GGCCATCTAGTACTCTTATCTTAAAAC 57.521 37.037 0.00 0.00 0.00 2.43
1967 2153 2.092321 ACAGTCGGCCATCTAGTACTCT 60.092 50.000 2.24 0.00 0.00 3.24
1968 2154 2.291190 GACAGTCGGCCATCTAGTACTC 59.709 54.545 2.24 0.00 0.00 2.59
1970 2156 2.022195 TGACAGTCGGCCATCTAGTAC 58.978 52.381 2.24 0.00 0.00 2.73
1971 2157 2.430248 TGACAGTCGGCCATCTAGTA 57.570 50.000 2.24 0.00 0.00 1.82
1973 2159 1.683385 TCATGACAGTCGGCCATCTAG 59.317 52.381 2.24 0.00 0.00 2.43
1974 2160 1.775385 TCATGACAGTCGGCCATCTA 58.225 50.000 2.24 0.00 0.00 1.98
1975 2161 1.126488 ATCATGACAGTCGGCCATCT 58.874 50.000 2.24 0.00 0.00 2.90
2060 2254 4.736168 GCAGCATCTTGAGTAGGAGTACAG 60.736 50.000 0.00 0.00 0.00 2.74
2061 2255 3.131223 GCAGCATCTTGAGTAGGAGTACA 59.869 47.826 0.00 0.00 0.00 2.90
2063 2257 3.131223 GTGCAGCATCTTGAGTAGGAGTA 59.869 47.826 0.00 0.00 0.00 2.59
2064 2258 2.093764 GTGCAGCATCTTGAGTAGGAGT 60.094 50.000 0.00 0.00 0.00 3.85
2066 2260 1.901833 TGTGCAGCATCTTGAGTAGGA 59.098 47.619 0.00 0.00 0.00 2.94
2067 2261 2.391616 TGTGCAGCATCTTGAGTAGG 57.608 50.000 0.00 0.00 0.00 3.18
2068 2262 3.593096 TCTTGTGCAGCATCTTGAGTAG 58.407 45.455 0.00 0.00 0.00 2.57
2069 2263 3.683365 TCTTGTGCAGCATCTTGAGTA 57.317 42.857 0.00 0.00 0.00 2.59
2131 2330 0.957395 CTGCAGGTTGTCTCGGCAAT 60.957 55.000 5.57 0.00 33.58 3.56
2148 2347 2.954989 TCTCAGCAGGCTGTATCTACTG 59.045 50.000 19.75 13.15 43.96 2.74
2158 2357 0.321475 GCAGTTCTTCTCAGCAGGCT 60.321 55.000 0.00 0.00 0.00 4.58
2248 2458 8.322906 TGTCCAACAAGACATTTGATAAGTAG 57.677 34.615 0.00 0.00 41.78 2.57
2310 2522 3.194116 AGAGTGGAAGAACGGCGTATTAA 59.806 43.478 15.20 0.87 0.00 1.40
2314 2526 0.242825 CAGAGTGGAAGAACGGCGTA 59.757 55.000 15.20 0.00 0.00 4.42
2316 2528 0.600255 AACAGAGTGGAAGAACGGCG 60.600 55.000 4.80 4.80 0.00 6.46
2481 2696 1.369091 ATGAGCAAACGATCACCGGC 61.369 55.000 0.00 0.00 43.93 6.13
2486 2701 1.554617 TCAGGGATGAGCAAACGATCA 59.445 47.619 0.00 0.00 32.44 2.92
2491 2706 1.796796 GCGTCAGGGATGAGCAAAC 59.203 57.895 0.00 0.00 0.00 2.93
2493 2708 2.125552 CGCGTCAGGGATGAGCAA 60.126 61.111 0.00 0.00 0.00 3.91
2502 2726 2.383527 GGAAACAGAGCGCGTCAGG 61.384 63.158 8.43 3.68 0.00 3.86
2599 2824 1.804326 CGACGCACCCGAAGTTAGG 60.804 63.158 0.00 0.00 38.29 2.69
2601 2826 1.210931 CTCGACGCACCCGAAGTTA 59.789 57.895 0.00 0.00 38.29 2.24
2685 2913 2.688666 AAGGCGAGCTGGATCCCA 60.689 61.111 9.90 0.00 0.00 4.37
2838 3066 1.334992 CTAACCGAGCACACACGACG 61.335 60.000 0.00 0.00 30.81 5.12
2855 3086 3.731547 TCGAGACGAGGGGGACTA 58.268 61.111 0.00 0.00 0.00 2.59
2869 3100 3.452786 CCTCCGGAAGCTGCTCGA 61.453 66.667 5.23 1.25 0.00 4.04
2872 3103 4.093291 CTGCCTCCGGAAGCTGCT 62.093 66.667 24.93 0.00 0.00 4.24
2883 3114 2.016704 CGACGTGTGTGACTGCCTC 61.017 63.158 0.00 0.00 0.00 4.70
2898 3129 0.374758 TGACGACGCTATGGTACGAC 59.625 55.000 0.00 0.00 0.00 4.34
2899 3130 0.374758 GTGACGACGCTATGGTACGA 59.625 55.000 0.00 0.00 0.00 3.43
2901 3132 0.248784 GGGTGACGACGCTATGGTAC 60.249 60.000 0.00 0.00 32.30 3.34
2902 3133 1.386525 GGGGTGACGACGCTATGGTA 61.387 60.000 0.00 0.00 35.38 3.25
2903 3134 2.718073 GGGGTGACGACGCTATGGT 61.718 63.158 0.00 0.00 35.38 3.55
2904 3135 2.106332 GGGGTGACGACGCTATGG 59.894 66.667 0.00 0.00 35.38 2.74
2905 3136 2.106332 GGGGGTGACGACGCTATG 59.894 66.667 0.00 0.00 35.38 2.23
2906 3137 3.524606 CGGGGGTGACGACGCTAT 61.525 66.667 0.00 0.00 35.38 2.97
2914 3145 3.767630 AACAGCACACGGGGGTGAC 62.768 63.158 5.01 0.00 41.32 3.67
2915 3146 3.050354 AAACAGCACACGGGGGTGA 62.050 57.895 5.01 0.00 41.32 4.02
2917 3148 2.518349 CAAACAGCACACGGGGGT 60.518 61.111 0.00 0.00 0.00 4.95
2918 3149 2.070654 GAACAAACAGCACACGGGGG 62.071 60.000 0.00 0.00 0.00 5.40
2927 3162 3.364964 CCACGATACCTTGAACAAACAGC 60.365 47.826 0.00 0.00 0.00 4.40
2941 3176 2.030823 TGACACGACGATACCACGATAC 59.969 50.000 0.00 0.00 37.03 2.24
2943 3178 1.089112 TGACACGACGATACCACGAT 58.911 50.000 0.00 0.00 37.03 3.73
2947 3182 1.610038 ACAAGTGACACGACGATACCA 59.390 47.619 0.00 0.00 0.00 3.25
2949 3184 2.658285 ACACAAGTGACACGACGATAC 58.342 47.619 7.28 0.00 0.00 2.24
2953 3188 1.519758 GGTTACACAAGTGACACGACG 59.480 52.381 7.28 0.00 36.07 5.12
2954 3189 2.542597 TGGTTACACAAGTGACACGAC 58.457 47.619 7.28 0.00 36.07 4.34
2956 3191 4.343811 TTTTGGTTACACAAGTGACACG 57.656 40.909 7.28 0.00 36.07 4.49
2957 3192 4.502645 GCATTTTGGTTACACAAGTGACAC 59.497 41.667 7.28 0.00 36.07 3.67
2958 3193 4.400884 AGCATTTTGGTTACACAAGTGACA 59.599 37.500 7.28 0.00 36.07 3.58
2959 3194 4.932146 AGCATTTTGGTTACACAAGTGAC 58.068 39.130 7.28 0.00 33.79 3.67
2960 3195 5.590530 AAGCATTTTGGTTACACAAGTGA 57.409 34.783 7.28 0.00 36.17 3.41
2962 3197 5.729510 ACAAAGCATTTTGGTTACACAAGT 58.270 33.333 3.76 0.00 46.33 3.16
2963 3198 7.945033 ATACAAAGCATTTTGGTTACACAAG 57.055 32.000 3.76 0.00 46.33 3.16
2965 3200 7.965655 CGATATACAAAGCATTTTGGTTACACA 59.034 33.333 3.76 0.00 46.33 3.72
2966 3201 8.178964 TCGATATACAAAGCATTTTGGTTACAC 58.821 33.333 3.76 0.00 46.33 2.90
2967 3202 8.270080 TCGATATACAAAGCATTTTGGTTACA 57.730 30.769 3.76 0.00 46.33 2.41
2968 3203 9.730420 AATCGATATACAAAGCATTTTGGTTAC 57.270 29.630 0.00 0.00 46.33 2.50
2972 3207 9.559958 GGATAATCGATATACAAAGCATTTTGG 57.440 33.333 0.00 0.00 46.33 3.28
2997 3246 1.135139 ACGAGTGTACATAGCAGCTGG 59.865 52.381 17.12 0.31 0.00 4.85
3007 3256 6.514947 ACACCTAACAATTAACGAGTGTACA 58.485 36.000 0.00 0.00 35.09 2.90
3021 3270 6.256539 CGTCTCTATACGACTACACCTAACAA 59.743 42.308 0.00 0.00 45.68 2.83
3035 3284 5.540107 CGTAGCTTACATCGTCTCTATACG 58.460 45.833 0.00 0.00 44.19 3.06
3055 3304 3.678072 ACACTAGTTTCGTACGTAGCGTA 59.322 43.478 16.05 0.00 41.54 4.42
3056 3305 2.480419 ACACTAGTTTCGTACGTAGCGT 59.520 45.455 16.05 6.80 44.35 5.07
3057 3306 3.109230 ACACTAGTTTCGTACGTAGCG 57.891 47.619 16.05 6.17 0.00 4.26
3058 3307 7.498070 AAAATACACTAGTTTCGTACGTAGC 57.502 36.000 16.05 7.97 0.00 3.58
3098 3350 8.628280 CCACAAAAATACACAAATCCCATTTTT 58.372 29.630 0.00 0.00 38.61 1.94
3099 3351 7.777440 ACCACAAAAATACACAAATCCCATTTT 59.223 29.630 0.00 0.00 31.84 1.82
3100 3352 7.228308 CACCACAAAAATACACAAATCCCATTT 59.772 33.333 0.00 0.00 0.00 2.32
3106 3358 5.401079 CCGACACCACAAAAATACACAAATC 59.599 40.000 0.00 0.00 0.00 2.17
3143 3397 4.451096 ACCATGTGCTAGTTTCAAACTACG 59.549 41.667 5.86 4.51 42.81 3.51
3208 3462 6.646240 AGCTGAAATGCGAACATTACATTTTT 59.354 30.769 0.00 0.00 45.90 1.94
3209 3463 6.158598 AGCTGAAATGCGAACATTACATTTT 58.841 32.000 0.00 0.00 45.90 1.82
3210 3464 5.713025 AGCTGAAATGCGAACATTACATTT 58.287 33.333 0.00 0.00 45.90 2.32
3211 3465 5.314923 AGCTGAAATGCGAACATTACATT 57.685 34.783 0.00 0.00 45.90 2.71
3212 3466 4.970662 AGCTGAAATGCGAACATTACAT 57.029 36.364 0.00 0.00 45.90 2.29
3213 3467 4.379394 GGAAGCTGAAATGCGAACATTACA 60.379 41.667 0.00 0.00 45.90 2.41
3214 3468 4.098416 GGAAGCTGAAATGCGAACATTAC 58.902 43.478 0.00 0.00 45.90 1.89
3215 3469 4.009675 AGGAAGCTGAAATGCGAACATTA 58.990 39.130 0.00 0.00 45.90 1.90
3217 3471 2.440409 AGGAAGCTGAAATGCGAACAT 58.560 42.857 0.00 0.00 38.49 2.71
3218 3472 1.896220 AGGAAGCTGAAATGCGAACA 58.104 45.000 0.00 0.00 38.13 3.18
3219 3473 2.414691 GGAAGGAAGCTGAAATGCGAAC 60.415 50.000 0.00 0.00 38.13 3.95
3220 3474 1.812571 GGAAGGAAGCTGAAATGCGAA 59.187 47.619 0.00 0.00 38.13 4.70
3221 3475 1.453155 GGAAGGAAGCTGAAATGCGA 58.547 50.000 0.00 0.00 38.13 5.10
3222 3476 0.453390 GGGAAGGAAGCTGAAATGCG 59.547 55.000 0.00 0.00 38.13 4.73
3223 3477 1.203287 GTGGGAAGGAAGCTGAAATGC 59.797 52.381 0.00 0.00 0.00 3.56
3224 3478 1.821136 GGTGGGAAGGAAGCTGAAATG 59.179 52.381 0.00 0.00 0.00 2.32
3225 3479 1.428912 TGGTGGGAAGGAAGCTGAAAT 59.571 47.619 0.00 0.00 0.00 2.17
3226 3480 0.850100 TGGTGGGAAGGAAGCTGAAA 59.150 50.000 0.00 0.00 0.00 2.69
3227 3481 0.110486 GTGGTGGGAAGGAAGCTGAA 59.890 55.000 0.00 0.00 0.00 3.02
3228 3482 1.761174 GTGGTGGGAAGGAAGCTGA 59.239 57.895 0.00 0.00 0.00 4.26
3229 3483 1.303643 GGTGGTGGGAAGGAAGCTG 60.304 63.158 0.00 0.00 0.00 4.24
3230 3484 2.539081 GGGTGGTGGGAAGGAAGCT 61.539 63.158 0.00 0.00 0.00 3.74
3231 3485 2.035783 GGGTGGTGGGAAGGAAGC 59.964 66.667 0.00 0.00 0.00 3.86
3232 3486 1.435346 AAGGGGTGGTGGGAAGGAAG 61.435 60.000 0.00 0.00 0.00 3.46
3233 3487 1.388217 AAGGGGTGGTGGGAAGGAA 60.388 57.895 0.00 0.00 0.00 3.36
3234 3488 1.850755 GAAGGGGTGGTGGGAAGGA 60.851 63.158 0.00 0.00 0.00 3.36
3235 3489 2.763902 GAAGGGGTGGTGGGAAGG 59.236 66.667 0.00 0.00 0.00 3.46
3236 3490 2.351276 CGAAGGGGTGGTGGGAAG 59.649 66.667 0.00 0.00 0.00 3.46
3237 3491 2.448931 ACGAAGGGGTGGTGGGAA 60.449 61.111 0.00 0.00 0.00 3.97
3238 3492 2.926242 GACGAAGGGGTGGTGGGA 60.926 66.667 0.00 0.00 0.00 4.37
3239 3493 4.029809 GGACGAAGGGGTGGTGGG 62.030 72.222 0.00 0.00 0.00 4.61
3240 3494 2.824880 TTGGACGAAGGGGTGGTGG 61.825 63.158 0.00 0.00 0.00 4.61
3241 3495 1.599797 GTTGGACGAAGGGGTGGTG 60.600 63.158 0.00 0.00 0.00 4.17
3242 3496 2.826003 GGTTGGACGAAGGGGTGGT 61.826 63.158 0.00 0.00 0.00 4.16
3243 3497 2.033602 GGTTGGACGAAGGGGTGG 59.966 66.667 0.00 0.00 0.00 4.61
3244 3498 0.179001 AAAGGTTGGACGAAGGGGTG 60.179 55.000 0.00 0.00 0.00 4.61
3245 3499 0.109913 GAAAGGTTGGACGAAGGGGT 59.890 55.000 0.00 0.00 0.00 4.95
3246 3500 0.109723 TGAAAGGTTGGACGAAGGGG 59.890 55.000 0.00 0.00 0.00 4.79
3247 3501 1.812571 CATGAAAGGTTGGACGAAGGG 59.187 52.381 0.00 0.00 0.00 3.95
3248 3502 2.504367 ACATGAAAGGTTGGACGAAGG 58.496 47.619 0.00 0.00 0.00 3.46
3249 3503 6.761242 TCATATACATGAAAGGTTGGACGAAG 59.239 38.462 0.00 0.00 38.25 3.79
3250 3504 6.537301 GTCATATACATGAAAGGTTGGACGAA 59.463 38.462 0.00 0.00 42.79 3.85
3251 3505 6.046593 GTCATATACATGAAAGGTTGGACGA 58.953 40.000 0.00 0.00 42.79 4.20
3252 3506 5.815222 TGTCATATACATGAAAGGTTGGACG 59.185 40.000 0.00 0.00 42.79 4.79
3253 3507 7.624360 TTGTCATATACATGAAAGGTTGGAC 57.376 36.000 0.00 0.00 42.79 4.02
3254 3508 8.052141 TGATTGTCATATACATGAAAGGTTGGA 58.948 33.333 0.00 0.00 42.79 3.53
3255 3509 8.224389 TGATTGTCATATACATGAAAGGTTGG 57.776 34.615 0.00 0.00 42.79 3.77
3256 3510 9.507280 GTTGATTGTCATATACATGAAAGGTTG 57.493 33.333 0.00 0.00 42.79 3.77
3257 3511 8.686334 GGTTGATTGTCATATACATGAAAGGTT 58.314 33.333 0.00 0.00 42.79 3.50
3258 3512 7.833682 TGGTTGATTGTCATATACATGAAAGGT 59.166 33.333 0.00 0.00 42.79 3.50
3259 3513 8.131100 GTGGTTGATTGTCATATACATGAAAGG 58.869 37.037 0.00 0.00 42.79 3.11
3260 3514 8.676401 TGTGGTTGATTGTCATATACATGAAAG 58.324 33.333 0.00 0.00 42.79 2.62
3261 3515 8.572855 TGTGGTTGATTGTCATATACATGAAA 57.427 30.769 0.00 0.00 42.79 2.69
3262 3516 8.750515 ATGTGGTTGATTGTCATATACATGAA 57.249 30.769 0.00 0.00 42.79 2.57
3263 3517 8.750515 AATGTGGTTGATTGTCATATACATGA 57.249 30.769 0.00 0.00 38.10 3.07
3278 3532 9.802039 AGAAGGTAAGTAAATTAATGTGGTTGA 57.198 29.630 0.00 0.00 0.00 3.18
3279 3533 9.840427 CAGAAGGTAAGTAAATTAATGTGGTTG 57.160 33.333 0.00 0.00 0.00 3.77
3280 3534 9.802039 TCAGAAGGTAAGTAAATTAATGTGGTT 57.198 29.630 0.00 0.00 0.00 3.67
3281 3535 9.802039 TTCAGAAGGTAAGTAAATTAATGTGGT 57.198 29.630 0.00 0.00 0.00 4.16
3284 3538 9.802039 TGGTTCAGAAGGTAAGTAAATTAATGT 57.198 29.630 0.00 0.00 0.00 2.71
3289 3543 8.088365 GCAATTGGTTCAGAAGGTAAGTAAATT 58.912 33.333 7.72 0.00 0.00 1.82
3290 3544 7.232534 TGCAATTGGTTCAGAAGGTAAGTAAAT 59.767 33.333 7.72 0.00 0.00 1.40
3291 3545 6.547880 TGCAATTGGTTCAGAAGGTAAGTAAA 59.452 34.615 7.72 0.00 0.00 2.01
3292 3546 6.016610 GTGCAATTGGTTCAGAAGGTAAGTAA 60.017 38.462 7.72 0.00 0.00 2.24
3293 3547 5.472137 GTGCAATTGGTTCAGAAGGTAAGTA 59.528 40.000 7.72 0.00 0.00 2.24
3294 3548 4.278419 GTGCAATTGGTTCAGAAGGTAAGT 59.722 41.667 7.72 0.00 0.00 2.24
3295 3549 4.520492 AGTGCAATTGGTTCAGAAGGTAAG 59.480 41.667 7.72 0.00 0.00 2.34
3296 3550 4.469657 AGTGCAATTGGTTCAGAAGGTAA 58.530 39.130 7.72 0.00 0.00 2.85
3297 3551 4.098914 AGTGCAATTGGTTCAGAAGGTA 57.901 40.909 7.72 0.00 0.00 3.08
3298 3552 2.949447 AGTGCAATTGGTTCAGAAGGT 58.051 42.857 7.72 0.00 0.00 3.50
3299 3553 4.326504 AAAGTGCAATTGGTTCAGAAGG 57.673 40.909 7.72 0.00 0.00 3.46
3300 3554 7.951530 AATTAAAGTGCAATTGGTTCAGAAG 57.048 32.000 7.72 0.00 0.00 2.85
3301 3555 9.255304 GTAAATTAAAGTGCAATTGGTTCAGAA 57.745 29.630 7.72 0.00 0.00 3.02
3302 3556 8.637986 AGTAAATTAAAGTGCAATTGGTTCAGA 58.362 29.630 7.72 0.00 0.00 3.27
3303 3557 8.816640 AGTAAATTAAAGTGCAATTGGTTCAG 57.183 30.769 7.72 0.00 0.00 3.02
3306 3560 9.483916 GGTAAGTAAATTAAAGTGCAATTGGTT 57.516 29.630 7.72 0.00 0.00 3.67
3307 3561 8.643324 TGGTAAGTAAATTAAAGTGCAATTGGT 58.357 29.630 7.72 0.00 0.00 3.67
3308 3562 9.482627 TTGGTAAGTAAATTAAAGTGCAATTGG 57.517 29.630 7.72 0.00 0.00 3.16
3313 3567 9.738832 GAAGTTTGGTAAGTAAATTAAAGTGCA 57.261 29.630 0.00 0.00 0.00 4.57
3314 3568 9.961265 AGAAGTTTGGTAAGTAAATTAAAGTGC 57.039 29.630 0.00 0.00 0.00 4.40
3375 3629 6.145696 GGCAAAACTGAGTAGTGTAGTACAAG 59.854 42.308 4.11 0.12 37.19 3.16
3408 3662 4.512571 GTGGCATTTTTGAGCAGTGAATTT 59.487 37.500 0.00 0.00 0.00 1.82
3409 3663 4.060205 GTGGCATTTTTGAGCAGTGAATT 58.940 39.130 0.00 0.00 0.00 2.17
3410 3664 3.322828 AGTGGCATTTTTGAGCAGTGAAT 59.677 39.130 0.00 0.00 0.00 2.57
3422 3676 2.428890 TCCAACGAAACAGTGGCATTTT 59.571 40.909 0.00 0.00 0.00 1.82
3460 3714 7.120432 TGACATGACGGTAATGATGAAAAATGA 59.880 33.333 12.50 0.00 0.00 2.57
3470 3725 3.006940 GCCTTTGACATGACGGTAATGA 58.993 45.455 12.50 0.00 0.00 2.57
3472 3727 2.365582 GGCCTTTGACATGACGGTAAT 58.634 47.619 0.00 0.00 0.00 1.89
3488 3743 4.699522 GCCTTCGGTCAACGGCCT 62.700 66.667 0.00 0.00 44.45 5.19
3491 3746 1.079127 ATCTGCCTTCGGTCAACGG 60.079 57.895 0.00 0.00 44.45 4.44
3505 3760 5.770162 GGGATAGGGGTATTTTTGTCATCTG 59.230 44.000 0.00 0.00 0.00 2.90
3571 3827 3.810896 GAAATCCCGTGGCGTGGC 61.811 66.667 0.00 0.00 0.00 5.01
3572 3828 3.496131 CGAAATCCCGTGGCGTGG 61.496 66.667 0.00 0.00 0.00 4.94
3573 3829 2.030401 TTCGAAATCCCGTGGCGTG 61.030 57.895 0.00 0.00 0.00 5.34
3574 3830 2.030958 GTTCGAAATCCCGTGGCGT 61.031 57.895 0.00 0.00 0.00 5.68
3575 3831 2.746803 GGTTCGAAATCCCGTGGCG 61.747 63.158 0.00 0.00 0.00 5.69
3580 3941 1.079681 TCGTGGGTTCGAAATCCCG 60.080 57.895 16.70 16.42 46.13 5.14
3631 3992 7.872113 ATTTCATAACTTTCCCTTAGCTCAG 57.128 36.000 0.00 0.00 0.00 3.35
3708 4084 3.003480 GGAGTAGCGAGCAACAAGAAAT 58.997 45.455 0.00 0.00 0.00 2.17
3722 4098 2.998316 AGCTGGAGAAATGGAGTAGC 57.002 50.000 0.00 0.00 0.00 3.58
3771 4147 6.038603 TCCTGCTATCATATTTGTTGTTGCTC 59.961 38.462 0.00 0.00 0.00 4.26
3797 4173 7.964559 TCAGAGAAATTTAGAAAATCATGTGCG 59.035 33.333 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.