Multiple sequence alignment - TraesCS5B01G426600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G426600 chr5B 100.000 2885 0 0 1 2885 602342481 602339597 0.000000e+00 5328
1 TraesCS5B01G426600 chr5B 84.375 128 16 4 1288 1413 653809262 653809137 3.900000e-24 122
2 TraesCS5B01G426600 chr5A 90.555 2181 101 40 731 2885 609956658 609954557 0.000000e+00 2789
3 TraesCS5B01G426600 chr5A 90.667 375 19 8 245 611 609957264 609956898 4.320000e-133 484
4 TraesCS5B01G426600 chr5A 91.518 224 17 2 1 224 609957560 609957339 1.000000e-79 307
5 TraesCS5B01G426600 chr5A 82.836 134 19 4 1282 1413 646010634 646010503 1.820000e-22 117
6 TraesCS5B01G426600 chr5D 92.093 1543 57 26 858 2385 488901394 488899902 0.000000e+00 2113
7 TraesCS5B01G426600 chr5D 91.746 836 42 19 1 833 488902202 488901391 0.000000e+00 1136
8 TraesCS5B01G426600 chr5D 92.913 508 25 5 2388 2885 488899862 488899356 0.000000e+00 728
9 TraesCS5B01G426600 chr5D 84.375 128 16 4 1288 1413 519435853 519435728 3.900000e-24 122
10 TraesCS5B01G426600 chr5D 77.143 175 36 4 1282 1454 87173745 87173573 6.580000e-17 99
11 TraesCS5B01G426600 chr3D 86.029 136 13 6 1285 1417 330062836 330062704 1.080000e-29 141
12 TraesCS5B01G426600 chr4A 80.814 172 22 9 1245 1408 1076559 1076727 1.090000e-24 124
13 TraesCS5B01G426600 chr2B 83.942 137 14 7 1284 1416 640765313 640765181 1.090000e-24 124
14 TraesCS5B01G426600 chr2A 83.942 137 14 7 1284 1416 680357725 680357593 1.090000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G426600 chr5B 602339597 602342481 2884 True 5328.000000 5328 100.000000 1 2885 1 chr5B.!!$R1 2884
1 TraesCS5B01G426600 chr5A 609954557 609957560 3003 True 1193.333333 2789 90.913333 1 2885 3 chr5A.!!$R2 2884
2 TraesCS5B01G426600 chr5D 488899356 488902202 2846 True 1325.666667 2113 92.250667 1 2885 3 chr5D.!!$R3 2884

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
724 789 0.105039 CTCTGGTTGCGAGGTATCCC 59.895 60.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2302 2518 0.451783 GGCGGAAAGGCTGTGTAATG 59.548 55.0 0.0 0.0 42.9 1.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 43 5.730550 ACGAGCTTAGACAAATAACATCCA 58.269 37.500 0.00 0.00 0.00 3.41
104 106 1.725641 TCATGCCAATCGAGTCACAC 58.274 50.000 0.00 0.00 0.00 3.82
170 172 3.950397 AGTCATCCGAAACTATGCCAAA 58.050 40.909 0.00 0.00 0.00 3.28
191 193 6.128282 CCAAAGCACACGATTTGTAAGAGTAT 60.128 38.462 0.00 0.00 45.08 2.12
238 289 1.111116 ATGATTTGCGGGCATCCCAG 61.111 55.000 2.47 0.00 45.83 4.45
290 346 2.819595 CGCACCTCACATTCCGGG 60.820 66.667 0.00 0.00 0.00 5.73
291 347 3.134127 GCACCTCACATTCCGGGC 61.134 66.667 0.00 0.00 0.00 6.13
292 348 2.350895 CACCTCACATTCCGGGCA 59.649 61.111 0.00 0.00 0.00 5.36
320 376 3.978571 GAGGCGGAGGGGCAAAGTC 62.979 68.421 0.00 0.00 45.36 3.01
323 379 2.975536 CGGAGGGGCAAAGTCGTA 59.024 61.111 0.00 0.00 0.00 3.43
329 385 3.078837 GAGGGGCAAAGTCGTAAAATCA 58.921 45.455 0.00 0.00 0.00 2.57
435 494 2.231235 GCAGTGTAAAATCACAAGGGGG 59.769 50.000 0.00 0.00 40.37 5.40
549 611 2.027653 AGTACCTTTCTCCAAGCTCTGC 60.028 50.000 0.00 0.00 0.00 4.26
711 776 3.279183 CGGAGCTTCGTCTCTGGT 58.721 61.111 6.14 0.00 36.16 4.00
723 788 1.112113 TCTCTGGTTGCGAGGTATCC 58.888 55.000 0.00 0.00 0.00 2.59
724 789 0.105039 CTCTGGTTGCGAGGTATCCC 59.895 60.000 0.00 0.00 0.00 3.85
778 962 0.834612 TGACCCGTTTCTTGGAGTGT 59.165 50.000 0.00 0.00 0.00 3.55
854 1039 2.204034 CCCCCACCCAAGCCTTTT 59.796 61.111 0.00 0.00 0.00 2.27
856 1041 1.156095 CCCCACCCAAGCCTTTTCT 59.844 57.895 0.00 0.00 0.00 2.52
857 1042 0.900182 CCCCACCCAAGCCTTTTCTC 60.900 60.000 0.00 0.00 0.00 2.87
858 1043 1.244019 CCCACCCAAGCCTTTTCTCG 61.244 60.000 0.00 0.00 0.00 4.04
859 1044 1.244019 CCACCCAAGCCTTTTCTCGG 61.244 60.000 0.00 0.00 0.00 4.63
873 1058 4.082523 TCGGCCCTTCTTCGCTGG 62.083 66.667 0.00 0.00 31.99 4.85
916 1101 4.501571 GGGGAAAGTTTGGAGAAGCTTTTC 60.502 45.833 8.46 8.46 41.24 2.29
1238 1423 3.768922 GAGACGGGCTCTGCTGCT 61.769 66.667 2.86 0.00 40.61 4.24
1666 1851 3.650298 CTGACCCCCGTCCTCCGTA 62.650 68.421 0.00 0.00 38.32 4.02
1947 2145 3.090532 GGGGAAGTGGCGGGAGAT 61.091 66.667 0.00 0.00 0.00 2.75
1975 2173 2.746277 GTGGCGGGAGATGCGTTT 60.746 61.111 0.00 0.00 0.00 3.60
1988 2191 5.135508 AGATGCGTTTCAGTACTGTTACT 57.864 39.130 21.99 8.86 39.30 2.24
1989 2192 6.263516 AGATGCGTTTCAGTACTGTTACTA 57.736 37.500 21.99 12.44 36.31 1.82
1990 2193 6.864342 AGATGCGTTTCAGTACTGTTACTAT 58.136 36.000 21.99 15.68 36.31 2.12
2071 2283 1.554160 AGAGCAGAGGAGTGAATGGTG 59.446 52.381 0.00 0.00 0.00 4.17
2083 2295 1.408340 TGAATGGTGTGTTGCTTGTGG 59.592 47.619 0.00 0.00 0.00 4.17
2084 2296 1.408702 GAATGGTGTGTTGCTTGTGGT 59.591 47.619 0.00 0.00 0.00 4.16
2085 2297 0.746063 ATGGTGTGTTGCTTGTGGTG 59.254 50.000 0.00 0.00 0.00 4.17
2105 2317 3.494254 GGTGGTGGTGGTGGTGGA 61.494 66.667 0.00 0.00 0.00 4.02
2268 2484 6.295039 AGTAAACTGTAATTGTTGTCGTGG 57.705 37.500 0.00 0.00 0.00 4.94
2274 2490 2.045561 AATTGTTGTCGTGGTGGTGA 57.954 45.000 0.00 0.00 0.00 4.02
2275 2491 2.045561 ATTGTTGTCGTGGTGGTGAA 57.954 45.000 0.00 0.00 0.00 3.18
2276 2492 1.374560 TTGTTGTCGTGGTGGTGAAG 58.625 50.000 0.00 0.00 0.00 3.02
2278 2494 0.655733 GTTGTCGTGGTGGTGAAGTG 59.344 55.000 0.00 0.00 0.00 3.16
2281 2497 0.878961 GTCGTGGTGGTGAAGTGGTC 60.879 60.000 0.00 0.00 0.00 4.02
2282 2498 1.954146 CGTGGTGGTGAAGTGGTCG 60.954 63.158 0.00 0.00 0.00 4.79
2283 2499 1.145377 GTGGTGGTGAAGTGGTCGT 59.855 57.895 0.00 0.00 0.00 4.34
2284 2500 0.878961 GTGGTGGTGAAGTGGTCGTC 60.879 60.000 0.00 0.00 0.00 4.20
2285 2501 1.331399 TGGTGGTGAAGTGGTCGTCA 61.331 55.000 0.00 0.00 0.00 4.35
2286 2502 0.600255 GGTGGTGAAGTGGTCGTCAG 60.600 60.000 0.00 0.00 33.25 3.51
2287 2503 1.069090 TGGTGAAGTGGTCGTCAGC 59.931 57.895 6.45 6.45 45.56 4.26
2288 2504 1.367840 GGTGAAGTGGTCGTCAGCT 59.632 57.895 6.22 0.00 43.39 4.24
2289 2505 0.667792 GGTGAAGTGGTCGTCAGCTC 60.668 60.000 6.22 0.00 43.39 4.09
2290 2506 1.004277 GTGAAGTGGTCGTCAGCTCG 61.004 60.000 0.00 0.00 33.25 5.03
2291 2507 1.286260 GAAGTGGTCGTCAGCTCGT 59.714 57.895 0.00 0.00 0.00 4.18
2292 2508 1.004277 GAAGTGGTCGTCAGCTCGTG 61.004 60.000 0.00 0.00 0.00 4.35
2293 2509 1.735376 AAGTGGTCGTCAGCTCGTGT 61.735 55.000 0.00 0.00 0.00 4.49
2294 2510 2.016704 GTGGTCGTCAGCTCGTGTG 61.017 63.158 0.00 0.00 0.00 3.82
2295 2511 2.335369 GGTCGTCAGCTCGTGTGT 59.665 61.111 0.00 0.00 0.00 3.72
2296 2512 1.299926 GGTCGTCAGCTCGTGTGTT 60.300 57.895 0.00 0.00 0.00 3.32
2297 2513 0.874607 GGTCGTCAGCTCGTGTGTTT 60.875 55.000 0.00 0.00 0.00 2.83
2298 2514 0.229753 GTCGTCAGCTCGTGTGTTTG 59.770 55.000 0.00 0.00 0.00 2.93
2299 2515 0.179121 TCGTCAGCTCGTGTGTTTGT 60.179 50.000 0.00 0.00 0.00 2.83
2300 2516 0.650512 CGTCAGCTCGTGTGTTTGTT 59.349 50.000 0.00 0.00 0.00 2.83
2301 2517 1.062002 CGTCAGCTCGTGTGTTTGTTT 59.938 47.619 0.00 0.00 0.00 2.83
2302 2518 2.705154 GTCAGCTCGTGTGTTTGTTTC 58.295 47.619 0.00 0.00 0.00 2.78
2303 2519 2.095213 GTCAGCTCGTGTGTTTGTTTCA 59.905 45.455 0.00 0.00 0.00 2.69
2309 2525 4.436523 GCTCGTGTGTTTGTTTCATTACAC 59.563 41.667 0.00 0.00 40.87 2.90
2310 2526 5.547181 TCGTGTGTTTGTTTCATTACACA 57.453 34.783 0.00 0.00 46.04 3.72
2337 2553 2.654912 GCCTTGGTCGTCGTCGTTG 61.655 63.158 1.33 0.00 38.33 4.10
2401 2657 2.488153 GCGTCTTTACTGGCTCCAAATT 59.512 45.455 0.00 0.00 0.00 1.82
2404 2660 4.142816 CGTCTTTACTGGCTCCAAATTCAG 60.143 45.833 0.00 0.00 0.00 3.02
2425 2681 2.145865 CCAAGTGGGAGTGTGACCT 58.854 57.895 0.00 0.00 40.01 3.85
2465 2722 3.383761 AGCAAGCGAATGTTTTCCTTTG 58.616 40.909 0.00 0.00 0.00 2.77
2604 2872 7.166167 GGAAATGGTGGTAGAAACTAGAAAGA 58.834 38.462 0.00 0.00 0.00 2.52
2612 2880 4.625607 AGAAACTAGAAAGACACCTGGG 57.374 45.455 0.00 0.00 0.00 4.45
2618 2886 0.967380 GAAAGACACCTGGGCATGGG 60.967 60.000 0.00 0.00 0.00 4.00
2628 2896 2.275380 GGGCATGGGCACGTTTCTT 61.275 57.895 0.00 0.00 43.71 2.52
2661 2929 5.476945 AGACTTTTCAAACCGGATATTTGCT 59.523 36.000 9.46 0.00 37.05 3.91
2662 2930 5.469479 ACTTTTCAAACCGGATATTTGCTG 58.531 37.500 9.46 2.69 37.05 4.41
2663 2931 3.502191 TTCAAACCGGATATTTGCTGC 57.498 42.857 9.46 0.00 37.05 5.25
2664 2932 2.722094 TCAAACCGGATATTTGCTGCT 58.278 42.857 9.46 0.00 37.05 4.24
2665 2933 3.088532 TCAAACCGGATATTTGCTGCTT 58.911 40.909 9.46 0.00 37.05 3.91
2666 2934 4.265893 TCAAACCGGATATTTGCTGCTTA 58.734 39.130 9.46 0.00 37.05 3.09
2667 2935 4.095782 TCAAACCGGATATTTGCTGCTTAC 59.904 41.667 9.46 0.00 37.05 2.34
2668 2936 2.210116 ACCGGATATTTGCTGCTTACG 58.790 47.619 9.46 0.00 0.00 3.18
2669 2937 2.159014 ACCGGATATTTGCTGCTTACGA 60.159 45.455 9.46 0.00 0.00 3.43
2670 2938 2.476619 CCGGATATTTGCTGCTTACGAG 59.523 50.000 0.00 0.00 0.00 4.18
2807 3088 3.767301 GCCTTTCGCGCCATTTTC 58.233 55.556 0.00 0.00 0.00 2.29
2808 3089 1.805539 GCCTTTCGCGCCATTTTCC 60.806 57.895 0.00 0.00 0.00 3.13
2814 3095 3.381136 GCGCCATTTTCCTGCCCA 61.381 61.111 0.00 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 43 2.042464 TCAAGACTGCACTCACTTCCT 58.958 47.619 0.00 0.00 0.00 3.36
67 69 4.558095 GCATGATATGTGCTGGGACAATTC 60.558 45.833 0.00 0.88 38.70 2.17
170 172 5.163854 GCAATACTCTTACAAATCGTGTGCT 60.164 40.000 0.00 0.00 41.89 4.40
191 193 7.722285 AGTTTAGGTCTTTAATGTTACCAGCAA 59.278 33.333 0.00 0.00 34.29 3.91
215 217 1.027357 GATGCCCGCAAATCATCAGT 58.973 50.000 0.00 0.00 37.23 3.41
238 289 4.622740 CGAAGTGGATTTGAATTTTGAGCC 59.377 41.667 0.00 0.00 0.00 4.70
306 362 0.320946 TTTACGACTTTGCCCCTCCG 60.321 55.000 0.00 0.00 0.00 4.63
320 376 2.323939 TGCCTTTGCGTGATTTTACG 57.676 45.000 0.00 0.00 46.28 3.18
323 379 1.486439 CGTTGCCTTTGCGTGATTTT 58.514 45.000 0.00 0.00 41.78 1.82
435 494 4.059511 TCTCGTCCTCTCGATCTTATCAC 58.940 47.826 0.00 0.00 39.12 3.06
488 547 4.381079 GGAGATGGTATAGATTCACTCGCC 60.381 50.000 0.00 0.00 0.00 5.54
549 611 2.692741 GAGGGGAGGGGGTTGAGG 60.693 72.222 0.00 0.00 0.00 3.86
723 788 4.883354 GCCAGGAATCCCCAGCGG 62.883 72.222 0.00 0.00 37.41 5.52
757 941 2.294074 CACTCCAAGAAACGGGTCAAA 58.706 47.619 0.00 0.00 0.00 2.69
854 1039 2.680352 AGCGAAGAAGGGCCGAGA 60.680 61.111 0.00 0.00 0.00 4.04
856 1041 4.082523 CCAGCGAAGAAGGGCCGA 62.083 66.667 0.00 0.00 0.00 5.54
857 1042 3.901797 AACCAGCGAAGAAGGGCCG 62.902 63.158 0.00 0.00 0.00 6.13
858 1043 2.034221 AACCAGCGAAGAAGGGCC 59.966 61.111 0.00 0.00 0.00 5.80
859 1044 1.003233 AGAACCAGCGAAGAAGGGC 60.003 57.895 0.00 0.00 0.00 5.19
860 1045 0.674895 CCAGAACCAGCGAAGAAGGG 60.675 60.000 0.00 0.00 0.00 3.95
861 1046 1.301677 GCCAGAACCAGCGAAGAAGG 61.302 60.000 0.00 0.00 0.00 3.46
862 1047 0.603707 TGCCAGAACCAGCGAAGAAG 60.604 55.000 0.00 0.00 0.00 2.85
916 1101 0.466555 TTGGGGAAAACACAGGACGG 60.467 55.000 0.00 0.00 31.29 4.79
1047 1232 2.841988 GGCAGGGGAGCGAGAGAT 60.842 66.667 0.00 0.00 34.64 2.75
1197 1382 2.833582 ATGGACGACGCCGGAGAT 60.834 61.111 13.83 0.00 40.78 2.75
1335 1520 2.922503 TTCTGCAGGCTCGGGTCA 60.923 61.111 15.13 0.00 0.00 4.02
1743 1928 1.299976 GAACTCCACCGCCTTGGAT 59.700 57.895 1.43 0.00 44.97 3.41
1800 1985 1.006102 CTGCCAGTCGAACTCCGTT 60.006 57.895 0.00 0.00 39.75 4.44
1933 2131 2.892425 CGCATCTCCCGCCACTTC 60.892 66.667 0.00 0.00 0.00 3.01
1957 2155 4.778143 AACGCATCTCCCGCCACC 62.778 66.667 0.00 0.00 0.00 4.61
2029 2235 1.515736 GCTACCGGAGTGTACGCAC 60.516 63.158 9.46 1.74 45.57 5.34
2042 2248 1.143620 CCTCTGCTCTGCTGCTACC 59.856 63.158 0.00 0.00 0.00 3.18
2071 2283 1.319614 ACCACCACCACAAGCAACAC 61.320 55.000 0.00 0.00 0.00 3.32
2083 2295 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
2084 2296 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
2085 2297 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
2268 2484 1.222115 GCTGACGACCACTTCACCAC 61.222 60.000 0.00 0.00 0.00 4.16
2274 2490 1.007271 CACGAGCTGACGACCACTT 60.007 57.895 1.33 0.00 37.03 3.16
2275 2491 2.194212 ACACGAGCTGACGACCACT 61.194 57.895 1.33 0.00 37.03 4.00
2276 2492 2.016704 CACACGAGCTGACGACCAC 61.017 63.158 1.33 0.00 37.03 4.16
2278 2494 0.874607 AAACACACGAGCTGACGACC 60.875 55.000 1.33 0.00 37.03 4.79
2281 2497 0.650512 AACAAACACACGAGCTGACG 59.349 50.000 0.00 0.00 39.31 4.35
2282 2498 2.095213 TGAAACAAACACACGAGCTGAC 59.905 45.455 0.00 0.00 0.00 3.51
2283 2499 2.351455 TGAAACAAACACACGAGCTGA 58.649 42.857 0.00 0.00 0.00 4.26
2284 2500 2.823196 TGAAACAAACACACGAGCTG 57.177 45.000 0.00 0.00 0.00 4.24
2285 2501 4.334203 TGTAATGAAACAAACACACGAGCT 59.666 37.500 0.00 0.00 0.00 4.09
2286 2502 4.436523 GTGTAATGAAACAAACACACGAGC 59.563 41.667 12.47 0.00 41.43 5.03
2287 2503 5.564768 TGTGTAATGAAACAAACACACGAG 58.435 37.500 14.67 0.00 45.27 4.18
2288 2504 5.547181 TGTGTAATGAAACAAACACACGA 57.453 34.783 14.67 0.34 45.27 4.35
2289 2505 4.204168 GCTGTGTAATGAAACAAACACACG 59.796 41.667 14.67 12.66 45.27 4.49
2290 2506 4.502645 GGCTGTGTAATGAAACAAACACAC 59.497 41.667 14.67 10.75 45.27 3.82
2292 2508 4.932146 AGGCTGTGTAATGAAACAAACAC 58.068 39.130 0.00 0.00 42.00 3.32
2293 2509 5.590530 AAGGCTGTGTAATGAAACAAACA 57.409 34.783 0.00 0.00 0.00 2.83
2294 2510 5.462068 GGAAAGGCTGTGTAATGAAACAAAC 59.538 40.000 0.00 0.00 0.00 2.93
2295 2511 5.596845 GGAAAGGCTGTGTAATGAAACAAA 58.403 37.500 0.00 0.00 0.00 2.83
2296 2512 4.261405 CGGAAAGGCTGTGTAATGAAACAA 60.261 41.667 0.00 0.00 0.00 2.83
2297 2513 3.252215 CGGAAAGGCTGTGTAATGAAACA 59.748 43.478 0.00 0.00 0.00 2.83
2298 2514 3.821841 CGGAAAGGCTGTGTAATGAAAC 58.178 45.455 0.00 0.00 0.00 2.78
2299 2515 2.227865 GCGGAAAGGCTGTGTAATGAAA 59.772 45.455 0.00 0.00 0.00 2.69
2300 2516 1.810151 GCGGAAAGGCTGTGTAATGAA 59.190 47.619 0.00 0.00 0.00 2.57
2301 2517 1.448985 GCGGAAAGGCTGTGTAATGA 58.551 50.000 0.00 0.00 0.00 2.57
2302 2518 0.451783 GGCGGAAAGGCTGTGTAATG 59.548 55.000 0.00 0.00 42.90 1.90
2303 2519 2.868253 GGCGGAAAGGCTGTGTAAT 58.132 52.632 0.00 0.00 42.90 1.89
2337 2553 1.136611 CAGCTCGCGTAAACAACTCAC 60.137 52.381 5.77 0.00 0.00 3.51
2418 2674 0.984230 GGGATCCTGTCAAGGTCACA 59.016 55.000 12.58 0.00 44.82 3.58
2425 2681 3.031736 GCTACTACTGGGATCCTGTCAA 58.968 50.000 12.58 0.00 36.99 3.18
2465 2722 1.135402 CCCTACACGCTTGGAAAATGC 60.135 52.381 0.00 0.00 0.00 3.56
2490 2747 2.604914 CCGAATTGACCTCTCACAATCG 59.395 50.000 0.00 0.00 35.99 3.34
2579 2847 7.119407 GTCTTTCTAGTTTCTACCACCATTTCC 59.881 40.741 0.00 0.00 0.00 3.13
2604 2872 4.684134 GTGCCCATGCCCAGGTGT 62.684 66.667 0.00 0.00 36.33 4.16
2612 2880 1.080569 CCAAGAAACGTGCCCATGC 60.081 57.895 0.00 0.00 38.26 4.06
2618 2886 2.614983 TCTACCAAACCAAGAAACGTGC 59.385 45.455 0.00 0.00 0.00 5.34
2661 2929 0.666274 CACCGAAGCACTCGTAAGCA 60.666 55.000 7.36 0.00 46.65 3.91
2662 2930 1.956620 GCACCGAAGCACTCGTAAGC 61.957 60.000 7.36 4.79 46.65 3.09
2663 2931 1.674611 CGCACCGAAGCACTCGTAAG 61.675 60.000 7.36 0.00 46.65 2.34
2664 2932 1.731613 CGCACCGAAGCACTCGTAA 60.732 57.895 7.36 0.00 46.65 3.18
2665 2933 2.126618 CGCACCGAAGCACTCGTA 60.127 61.111 7.36 0.00 46.65 3.43
2814 3095 4.253685 CACTACCGTCATTTTGACCAGAT 58.746 43.478 2.26 0.00 44.20 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.