>input_sequence_66274
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----------------------------------------------------------------ATGTCTCCTGCCGACT
CCCTCGCCGCCGGCCGGACCCGCCGCGCTGGATCTCTCGCTCCCCTGCCCAAGCGCGTGTGCGTCTTCTTCGTGGACGCC
GACGCCACCGAGTCCGAGTCCTCGGGGGACGAAGAGGTCAGGCGCGGCAAGCGGCGCGTGCGGAAGGTCATCGACATCAG
CGTGAAGGCCTCCTCTCAGCCATCTCCGGCGTCGTCCATCCCACGGAGACGGGCTCTGCTGCTGCGGCGGCGGGCGGCGA
AGGCCGGCGACGGCGGCTACCGCCGGCGGTTCCGTGGCGTGCGGCAGCGGCCGTGGGGCAAGTACGCCGCGGAGATCCGT
GACCCGAGCCTGCAGAAGCGGCTGTGGCTCGGCACCTTCGACACCGCCGAGGAGGCTGCCGCCGTGTACGACGACGCGGC
CGTGCGCCTCAAGGGATCCCACGCCGTCACCAACTTCTCGTCCAGCTCCAGCTCCGACTCCGACTACGTCGCGTCCAACA
AGCCCCGCTCCCCGCCGCCGGCGAAGCTCCGTCCTACCGGGGAAGCGGCAGCAGAGGCCACCGCGACCGTTCCCCCATCC
GCGCCGTCGCCGCCCCCGGAGCCCGAGCCCGAGGACGACGACGCCGACTCGTTCAACCCGTTCGCCTCGTCCCTGACCCC
CGTCCTCCGTAGCGCGCCCGGCGAGGCGCCCCGCCCAGTGGACCACCTGTACGGCGAGCTCTGCGACCTGGCCTCGACCG
CTCCGCCATCCAAGGCGGTGGAGTTCGACTGGCAGCAGCCGTGGTGGGAGAGCGAGCCGAAGGCAACGGAGTTCGACTGG
CAGCTGCCGTGGTGGGAGAGCGAGGACTTCGTGATGCCGCCGGCGGCGAGCGCCGTCAGCGTGATATGA-----------
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>chr5B_1_TraesCS5B01G426600
TTTTCTTCTGCAAAAAATACGA-GCTTAGACAAATAACATCCAGGAAGTGAGTGCAGTCTTGAACTGTGAATTGTCCCAG
CACATATCATGCCAATCGAGTCACACACCTAACACAAAGTGTTAAGTTCCAATCCACTTTCTTGTGAACAAGTCATCCGA
AACTATGCCAAAGCACACGATTTGTAAGAGTATTGCTGGTAACATTAAAGACCTAAACTGATGAT---TTG---------
-------------------------------------CGGGCATCCCAGGCTCA-----AAATTCAAATCCACTTCGAAT
TCGAATCACGCACCTCACATTCCGGGCAGCATGAGCCGAGGCGGAGGGGCAAAGTCGTAAAATCACGCAAAGGCA---AC
GGCCCAGTCCTCTGCACCACTGCATGCGCTCGTTTCACTGTCAAAAGCAGAGCGGGTCACGCGGGGAGGGCAGCAGTGTA
AAATCACAAGGGGGTGATAAGATCGAGAGGACGAGAGGAGTACTCCGTAGTGGCATCCACCTGTGCGGCGAGTGAATCTA
TACCATCTCCTTCCGCTAGTA---GTACTAGTACCTTTCTCCAAGCTCTGCCTCAACCCCCTCCCCTCTGCTTCTATCCC
GCCGACCCGCT--CCCGTTAGAACCCTGTCTAAACCCCCAAAATCATCCCAGGATTACTCTCCTCCTCGCCCCGATCCGC
CCGGAGCAGCCGAGAGGC-GCCCCCCCCTGCCCAAATCCGGAGCTTCGTCTCTGGTTGCGAGGTATCCCGCTGG------
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---------------------------------GGATTCCTGGCGCGGCGCCTTTGCTTGTTTGACCCGTTTCTTGGAGT
GTGAGCTCGCTCACTTGGAGCGGCAGATCTCAGCGCTGCACCCCAGCAAAGGCTGCAAG-CCCCCCACCCAAGCCTTTTC
TCGGCCCTTCTTCGCTGGTTCTGGCAAGTATTTGCAAGGGGAAAGTTTGGAGAAGCTTTTCCGTCCTGTGTTTTCCCCAA
ATTGGAAGAGGCTTTCTTGGATGAGATTTGTGGTGGAATCTCAGTAGCGCTGGTGGAGATGGGGATGTCTCCTGCCGACT
CCCTCGCCGCCGGCCGGACCCGCCGCGCTGGATCTCTCGCTCCCCTGCCCAAGCGCGTGTGCGTCTTCTTCGTGGACGCC
GACGCCACCGAGTCCGAGTCCTCGGGGGACGAAGAGGTCAGGCGCGGCAAGCGGCGCGTGCGGAAGGTCATCGACATCAG
CGTGAAGGCCTCCTCTCAGCCATCTCCGGCGTCGTCCATCCCACGGAGACGGGCTCTGCTGCTGCGGCGGCGGGCGGCGA
AGGCCGGCGACGGCGGCTACCGCCGGCGGTTCCGTGGCGTGCGGCAGCGGCCGTGGGGCAAGTACGCCGCGGAGATCCGT
GACCCGAGCCTGCAGAAGCGGCTGTGGCTCGGCACCTTCGACACCGCCGAGGAGGCTGCCGCCGTGTACGACGACGCGGC
CGTGCGCCTCAAGGGATCCCACGCCGTCACCAACTTCTCGTCCAGCTCCAGCTCCGACTCCGACTACGTCGCGTCCAACA
AGCCCCGCTCCCCGCCGCCGGCGAAGCTCCGTCCTACCGGGGAAGCGGCAGCAGAGGCCACCGCGACCGTTCCCCCATCC
GCGCCGTCGCCGCCCCCGGAGCCCGAGCCCGAGGACGACGACGCCGACTCGTTCAACCCGTTCGCCTCGTCCCTGACCCC
CGTCCTCCGTAGCGCGCCCGGCGAGGCGCCCCGCCCAGTGGACCACCTGTACGGCGAGCTCTGCGACCTGGCCTCGACCG
CTCCGCCATCCAAGGCGGTGGAGTTCGACTGGCAGCAGCCGTGGTGGGAGAGCGAGCCGAAGGCAACGGAGTTCGACTGG
CAGCTGCCGTGGTGGGAGAGCGAGGACTTCGTGATGCCGCCGGCGGCGAGCGCCGTCAGCGTGATATGACGCCCCTGCCC
CTACCCG-------------TGTCGCGGCGTTTCGCGCCCTCGGGGCGGGGAAGTGGCGGGAGATGCGTGAGCCGGTGGC
GGGAGATGCGTTT-----CAGTACTGTTACTATTATTATTACTTCGTTTATTAAT---TATAGATCTACTAGTAGTGCGT
ACACTCCGGT------AGCAGCAGAGCAGAGGAGTGAATGGTGTGTTGCTTGTGGTGGTGGTGGTGGTGGTGGTGGAGGT
GAGCTCAGGCGGGGGGCCC--CGGCGCCCCGGCGTTGTGCGTGATCCGCCTTAACTCGCACGTCTCCGGCGTGGAAACGG
AGCAGTGCGGTCGCGTCGCAGTGCCGACAGTGGCCGCATGCCCGTTACTGTAATGACGAGTAAA-C-TGTAATTGTTGTC
GTGGTGGTGAAGTGGTCGTCAGCTCGTGTGTTTGTTTCATTACACAGCCTTTCCGCCTTGGTCGTCGTCGTTGTGAGTTG
TTTAC---GCGAGCTGGCGTCCAAGTGGTGAAGATTTTGCGTCTT-----------------------------------
--TACTGGCTCCAAATTCAGGCCCAAGTGGGAGTGTGACCTTGACAGGATCCCAGTAGTAGCAAGCGAATGTTTTCC-TT
TGCATTTTCCAAGCGTGTAGGGCCGCCGATTG------TGAGAGGTCAATTCGGCAAAGTTGCGCAGATCAAA-TAAAC-
---ATAGCCGGCCGCCGTGTCGCCGTCGCTCGCCAAGAAATTGGGGGGAAATGGTGGTAGAAACTAGAAAGACACCTGGG
CATGGGCACGTTTCTTGGTTTGGTAGACTTTTCAAACCGGATATTTGCTGCTTACGAGTGCTTC----------GGTGCG
CCACGAGGCGGCATCTCGGCCGTTATTCGTGCGGCCCGG---TGAGGAGGCGGTGGGGACCGCCCGGGTGGATTTGGCGG
GAACTTGGCGTGGCCTCAAGCGAGCGTGACGCCTTTCGCGCCATTTTCCTGCCCATCTGGTCAAAATGACGGTAGTGTCC
CTGTCCTATCGGCGGTGAGAAGCGCTCTCGCGGGACAGTCCCGGT
>chr5A_1
TTTTCTTGTGTGAAAAATACAA-GTTTAGACAAATAACATCCGGGAACCGAGCGCAGTCTTGAATTGTCAATTGTCCCAG
CACATATCATGCCAATGGAGTCACATACCTAACACAACGTGT-AAGTTCCAATCCACTTTCATGTGAACAAGTCATCCGA
AACTATGCCAA-GCACACGATTTGTAAGAGTACTGCTGGTAACATTAAAGACCTAATCTGATGATACAGAGCAACGCAGC
AGCTTAATTCATTTCAACCTGGCCACATGTTGGGCAACGGGCATCCCAAGCCCAAATTCAAATTCAAATCCACTTCGAAT
TCGAATCACGCACCTCACACTCCGG---GCATGAGGAGAGGAGGAGGGGCAAAGTGGTCAAATCCCGCAAAGGCAGGCAC
GGCCCAGTCCTCTGCACCACTGCATGCGCTCGTTTCACTGTCAAAAGCAGAGCAGGTCACGC--GGAGGGCAGCAGTGTA
AAATCACAAGGGG-TGATAAGATCGAGAGGACGAGAGGAGGACTCCGTAGTGGCATCCACCTGTGCCGTGAGTGAATCTA
TACCATCTCCTTCCGCAACTACTTGTACTAGTACCTTTCTCCAAGCTCTGTCCCAACCCCCCA--CTCTGCTTCTATCCC
GCCGACCCGCCCGCCCGGCAGAACCCTGTCTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATTCCTGGCGCGGCGCCTTTGCTTGCTTCACCCGTTTCTTGGAGT
GCGAGCTCGCTCACTGAGAGCGGCAGATCTCAGCGCCGAGCCCCAGCAAAAGCTGCAAGCCCCCCCACCCAAGCCTTTCC
-----------TCGCTGATTCTGGCAAGTATTTGCAAGGGGAAAGTTTGGAGAAGCTTTTTCGTCCTCTGGTTTCCCCAA
ATTGGAAGACGCTTTCTTGGATGAGATTTGTGGTGGAATCTCAGTAGCGCTGGTGGAGATGGGGATGTGTCCTGCCGACT
CCCTCGCCGCCGGCCGGACCCGCCGCGCTGGGTCCCTCGCTCCCCTGCCCAAGCGCGTCTGCGTCTTCTTCGTGGACGCC
GACGCCACCGAGTCCGAGTCCTCGGGGGACGAAGAGGTCAGGCGCGGCAGGCGGCGCGTGCGGAAGGTCATCGACATCAG
CGTGAAGGCCTCCTCTCAGCCGTCTCCGGCGTCGTCCGTCCCGCGGAGACGGGCTCTGCTGCGGCGGCGGCGGGTGGCCA
AGGCCGGCGACGGCGGCTACCGTCGGCGGTTCCGTGGCGTGCGGCAAAGGCCGTGGGGCAAGTACGCCGCGGAGATCCGC
GACCCGAGCCTGCAGAAGCGGCTGTGGCTCGGCACCTTCGACACCGCCGAGGAGGCTGCCGCCGTGTACGACGACGCGGC
CGTGCGCCTCAAGGGATCCCACGCCGTCACCAACTTCACGTCCAGCTCCAGCTCCGACTCCGACTACGTCGCGTCCGCCA
AGCCCCGCTCCCCGCCGCAGGCCAAGCTCCGTCCTACCGGGGAAGCGGCAGCAGAGGCCCCCGCGACCGTTCCCCCTTCC
GCGCCGTCGCCGCCCTCGCAGCCCGAGCCCGAGGAGGACGACGCCGACTCGTTCAACCCGTTCGCCTCGTCCCTCACCCC
CGTCCTCCGTCGCGCG------------CCCCGTCCAGTGGACCACCTGTACGGGGAGCTCAGCGACCTGGCCTCGGCCG
CTCCGCCGTCCAAGGCGGTGGAGTTCGACTGGCAGCAGCCGTGGTGGGACAGCGAACCGAAGGCGACGGAGTTCGACTGG
CAGCTGCCGTGGTGGGAGAGCGAGGACTTCGTGATGCCGCCGGCGGCGAGCGCCGTCGGCGTGATATGACGCCCCTGCCC
CTACCCCCACCCCCACCCCCTGCCGCGGCGTTTCGCGCCCTCGGGGCGGGC-AGTGGCGGGAGACGCGTGAGGCAGTGGC
GGGAGATGCGTTGCGTTCCAGTACTGTTAC---TATTATTACTTCGTTTATTAAT---TA--GATCTACTAGTACTGCGT
ACACTCCAGTAGCCGCAGCAGCAGAGCAGAGGAGTGAATGGTTGTTGCTT-------------GTGGTGGTGGTGGTGGT
GAGCTCAGGCGGGGGCCCCGCCC-----------TTGTGCGTGACCCGCCTTAACTCGCACGTCTCCGGGGTGGAAACGG
AGCAGTGCGGTCGCGTCGCAGTGCCGACAGTGGCCGCATGCCCGTTACTGTAATGACGAGTAAAAC-TGTAATTGTTGTC
GTGATGGTGTGTTTGTT----------------------TTACATCGCCTTTCCGCCTTGGTCGTCGTCGTGAGGAGTTG
TTCAC---GCAAGCTGGCGTCCAAGTGGTGAAGATTTTGCATCTT-----------------------------------
--TACTGGCTACAAATCCACGCCCAAGTGGGAGCGTGACCATGACAGGATCCCAGTAGTAGCAAATGAATGTTTTCTTTT
TCCATTTTCCAGGCGTGTAGGGCCGCGGATTG------TGAGAGGTCAATTCGGCAAAGTTGCGCAGATCAGATTAAAC-
---ATAGCCGGCCGCCGTGTCGCCGTCGCTCGCCAAGAAATTGGGGAGAAACGGTGGTGGAAACTAGAAAGCCACCTGGC
CATGGCCACGTTTCTCGGTTTGGTAGACTTTTCAAACCGGATATTTGC----------TGCTTC----------GGTGCG
CCACGAGGCGGCATCTCGGCCGTTATTCGTGCGGCCCGGTGATGAGGCGGCGGTGGGGACCGCACGGGTGGATTTGGCGG
GAACTTGGCGTGGCCTCAAGCCAGCGTGACGCCTTTCGCGCCATTTCT-TGCCCGTCTGGTCAAAATGACGGTACTGTCC
CTGTCCTATCGGCGGTGACAAGCGCTCTCGCGGGACAGTCCCGGT
>chr5D_1
TTTTCTTCTGCGAAAAATAAGGGGCTTAGACAAGTAACGTCC-GGAAGTGAGTGCAGTCTTGAACTGTCAATTGTCCCAG
CACATATCATGCCAATCGAGTCACATACCTAACACAAAGTGTTAAGTTCCAATCCACTTTCTTGTGAACAAGTCATCCGA
AACTATGCCAA-GCACACGATTTACCAGAGT-------------------ACCTAATCTGATGATACATTG---------
-------------------------------------CGGGCATCCCAAAGC-----TCAAATTCAAATCCACTTCGAAT
TCGAATCACGCACGTCACATTCCGG---GCATGAGCCTAGGAGGA-GGGCAAAGTGGTCAAATCCCGCAAAGGCA---AC
GGCCCAGTCCTCTGCACCACTGCATGCGCTCGTTTCACTGTCAAAAGCAGAGCGGGTCACGCGGGGAGGGCAGCAGCGTA
AAATCACAAGGGG-TGATAAGATCGAGAGGACGAGAGGAGTACTGCGTAGTGGCATCCACCTGTGCCGCGAGTGAATCTA
TACCATCTCCTTCCGCTAGTA---CTACTAGTACCTTTCTCCAACCTCTGTCTCAACCCCCTCCCCTCTGCTTCTATCCC
GCCGACCCGCT--CCCGTTAGAACCCTGTCTAAACCCCCAAAATCATCCCAGGATTACTCTCCTCCTCGCCCCGATCCGT
CCGGAGCGGCCGAGAGCCGGCCCCCCCCTGCCCAAATCCGGAGCTTCGTCTCTGGCTGCGAGGTATCGGGCTGG------
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---------------------------------GGATTCCTGGCGCGGCGCCTTTGCTTGCTTGGCCCGTTACTTGGAGT
GCGAGCTCGCTCACTTGGAGCGGCAGATCTCAGCGCTGAGCCCCGGCAAAGGCGGCCA----------------------
-------TTCTTCGCTGATTCTGGCAAGTATTTCCAAGGGGAAAGTTTGGAGAAGCTTTTTCGTCCCGTGTTTTCCCCAA
ATTGGAAGAGGCTTTCTTGGATGAGATTTGTGGTGGAATCTCAGTAGCGCTGGTGGGGATGGGGATGTCTCCTGCGGACT
CCCTCGCCGCCGGCCGGACCCGCCGCGCTGGGTCCCTCGCTCCCCGGCCCAAGCGCGTGTGCGTCTTCTTCGTGGACGCC
GACGCCACCGAGTCCGAGTCCTCGGGGGACGAGGAGGTCAGGCGCGGCGAGCGGCGCGTGCGGAAGGTCATCGACATCAG
CGT---------CTCTCAGCCGTCTCCGGCGTCGTCCATCCCACGGAGACGGGCTCTGCTGCGGCGGCGGCGGGCGGCGA
AGGCCGGCGACGGCGGCTACCGTCGGCGGTTCCGTGGCGTGCGGCAGCGGCCGTGGGGCAAGTACGCCGCGGAGATCCGC
GACCCGAGCCTGCAGAAGCGGCTGTGGCTCGGCACCTTCGACACCGCCGAGGAGGCTGCCGCCGTGTACGACGACGCGGC
CGTGCGCCTCAAGGGGTCCCATGCCGTCACCAACTTCTCGTCCAGCTCCAGCTCCGACTCCGACTACGTCGCGTCCACCA
AGCCCCGCTCCCCGCCGCAGGCGAACTTTCGTCCTACCGGGGAAGCGGCAGCAGAGGCCCCCGCGACCATTCCCCCCTCC
GCGCCGTCGCCGCCCTCGCAGCCCGAGCCCGAGGAGGACGACGCCGACTCGTTCAACCCGTTCGCGTTGCCCCTGACCCC
GGTCCTCCGTCGCGCGGCCGGCGAGGCGCCCCGCCCAGTGGACCAGCTGTACGGCGAGCTCTGCGACCTGGCCTCGGCCG
CTCCGCCGTCGAAGGCGGTGGAGTTCGACTGGCAGCAGCCGTGGTGGGATAGCGAGCCGAAGGCGACGGAGTTCGACTGG
CAGCTGCCGTGGTGGGAGAGCGAGGACTTCGTGATGCCGCCGCCGGCGAGCGCCGTCAGCGTGATATGACGCCCCTGCCC
CTACCCCG-----------CTGCCGCGCCGTTTCGCGCCCTCGGGGCGGG-AAGTGGCGGGAGGCGCGTGAGCCAGTGGC
GGGAGATGCGTTGCGTTCCAGTACTGTTAC---TATTATTACTTCGTTTATTAATTAGTA--GATCTACTAGTACTGCGT
ACACTCCAGTAGC------AGCAGAGCAGAGGAGTGAATGGTTTGTTGCTTGTG---GTGGTGGTGGTGGTGGTGGTGGT
GAGCTCAGGCGGGGCCCCCGCCGGCGCCCCGCCGTTGTGCGTGATCCGCCTTAACTCGCACGTCTCCGGCGTGGAAACGG
AGCAGTGCGGT-----------GCCGACAGTGGCCGCATGCCCGTTACTGTAATGACGAGTAAACTGTGTAATTGTTGTC
GTGATGGTGTGTTTGTT----------------------TTACATCGCCTTTCCGCCTTGGTCGTCGTCGTTATGAATTG
TTTACTACGCGAGCTGGTGT-CAAGTGGTGAAGATTTTGCGTCGTGATTGTGCATGTAATCGGGCGTGCACATCATCTTT
ACTACTGGCTCCAAATCCACGCACAAGTGGGAGCGTGGCCATGACAGGATCCCAGTAGTAGCAAGCGAATGTTTTCC-TT
TCCATTTTCCAAGCGTGTAGGGCCGCGGATTGGGATTGTGAGAGGTCAGTTCTGCAAAGTGGCGCAGATCGAA-TATACG
TACATAGCCGGCCGCCGAGTCGCCGTCGGTCGCCAAGAAATTGGGGAGAAATGGTGGTAGAAACTAGAAAGCCACCTGGC
CATGGCCACGTTTCTCGGTTTGGTAGACTTTTCAAACCGGATATTTGC----------TGCTTACGAGTGCTTGGGTGCG
CCACGAGGCGGCATCCCGGCCGTTATTCGTGCGGCCCGG---TGAGGAGGCGGTGGGGACCGCCCGGGTGGATTTGGCGG
GAACTTGGCGTGGCCTCAAGCCAGCGTGACGCCTTTCGCGCCATTTCT-TGCCCGTCTGGTCAAAATGACGGTACTGTCC
CTGTCCTATCGGCGGTGAGAAGCGCTCTCGCGGGACAGTCCCGGT
>SNPs
-----------S------------------------------S-------------------------S-----------
-------------------------S------------------------------------------------------
-----------S--------------------S-----------------------S-----------------------
------------------------------------------------S--S----------------------------
-------------------------SSS-------------S-------------S--S-----S---------------
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-------------S----------------------------------------------------S-------------
--------------------------------------------------S-----------------------------
-------------------------------------------------------------------------------S
-------S--------S--------------------------------------S-----------SS-----------
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------------------------------------------------------------S-------------------
-S------------------------------------SS--------------------------------------S-
SSSSSSS----------S------------------------------------------S-------------------
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-------------------------------S--S---------------------------------------------
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---------------------S----------------------------------------S-----------------
----------------------S--------------------------------------------------------S
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-----------------------------------------------------------------------------S--
------------------S----------------------------------------S----------------S---
---------------S--S----------------S--------------------------------------------
----------S-----S-----------------------------------------------------------S---
-------S-----------------------------------------S--------------S---------------
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------S---------------S---------------------------S-------------S---------S-----
------------S-----------------SSS---------------------------SS------------S-----
-------S----------------------------------S-----------SSS-------------------S---
---------------S---------------S------------------------------------------------
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---S-----SSS-S--SSSSSSSSSSSSSSSSSSSSSSS-----SS--------------------------S-------
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----------------S--S-------------S------S---------------------------------------
-S------------------------S-----------------------------------------------------
----------------------------------------------S------------------------S-------S
-----S---------S--------------------------------SSSSSSSSSS----------------------
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---------------------S------------------------SSS-----S-------------------S-----
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>forward_789
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-------------------------------------------------CTCTGGTTGCGAGGTATCCC-----------
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>reverse_2518
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-------------------------------------CATTACACAGCCTTTCCGCC-----------------------
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