Multiple sequence alignment - TraesCS5B01G426200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G426200 chr5B 100.000 3215 0 0 1 3215 601863542 601866756 0.000000e+00 5938.0
1 TraesCS5B01G426200 chr5B 83.854 192 18 10 15 193 66272607 66272798 1.530000e-38 171.0
2 TraesCS5B01G426200 chr5D 91.922 2872 80 44 431 3211 488676844 488679654 0.000000e+00 3879.0
3 TraesCS5B01G426200 chr5D 84.579 214 18 13 11 212 130541093 130540883 7.040000e-47 198.0
4 TraesCS5B01G426200 chr5D 83.886 211 23 8 11 210 61241246 61241036 1.180000e-44 191.0
5 TraesCS5B01G426200 chr5A 92.217 2287 86 43 696 2930 609618863 609621109 0.000000e+00 3153.0
6 TraesCS5B01G426200 chr5A 90.254 236 9 5 431 660 609618637 609618864 2.430000e-76 296.0
7 TraesCS5B01G426200 chr5A 78.439 269 38 15 2956 3215 609621161 609621418 1.190000e-34 158.0
8 TraesCS5B01G426200 chr2D 80.151 398 51 19 1181 1552 302253267 302252872 4.090000e-69 272.0
9 TraesCS5B01G426200 chr2D 86.321 212 19 7 11 212 24189979 24189768 4.170000e-54 222.0
10 TraesCS5B01G426200 chr2D 83.099 213 25 8 11 212 173608426 173608638 1.970000e-42 183.0
11 TraesCS5B01G426200 chr2A 86.000 250 30 3 1181 1426 379158733 379158485 2.460000e-66 263.0
12 TraesCS5B01G426200 chr2A 81.690 213 28 10 11 212 361720630 361720418 1.980000e-37 167.0
13 TraesCS5B01G426200 chr2B 85.200 250 32 3 1181 1426 357923704 357923456 5.320000e-63 252.0
14 TraesCS5B01G426200 chr7B 84.977 213 20 9 11 212 307233017 307232806 4.200000e-49 206.0
15 TraesCS5B01G426200 chr6B 86.550 171 23 0 1296 1466 522646869 522647039 4.230000e-44 189.0
16 TraesCS5B01G426200 chr6B 81.283 187 22 11 20 193 416509321 416509507 4.320000e-29 139.0
17 TraesCS5B01G426200 chr4B 82.160 213 25 12 11 212 240324054 240324264 1.530000e-38 171.0
18 TraesCS5B01G426200 chr6D 82.741 197 23 8 8 193 171492626 171492822 7.140000e-37 165.0
19 TraesCS5B01G426200 chr3D 100.000 28 0 0 1375 1402 22289609 22289636 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G426200 chr5B 601863542 601866756 3214 False 5938.000000 5938 100.000 1 3215 1 chr5B.!!$F2 3214
1 TraesCS5B01G426200 chr5D 488676844 488679654 2810 False 3879.000000 3879 91.922 431 3211 1 chr5D.!!$F1 2780
2 TraesCS5B01G426200 chr5A 609618637 609621418 2781 False 1202.333333 3153 86.970 431 3215 3 chr5A.!!$F1 2784

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
327 328 0.023732 CACGAACTGATACAAGCGCG 59.976 55.0 0.00 0.00 0.00 6.86 F
373 374 0.107831 ACACGGGCACATGTGTTAGT 59.892 50.0 26.01 19.08 44.87 2.24 F
403 404 0.319641 AGTGAAAAGTCGGACCGAGC 60.320 55.0 18.98 12.36 36.23 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1568 1628 1.458777 ACGGTGACCTCCTTGTCCA 60.459 57.895 0.00 0.0 34.25 4.02 R
1990 2065 1.657751 GGCGAATTGGACTGAAGGGC 61.658 60.000 0.00 0.0 0.00 5.19 R
2320 2408 2.183046 GAGGACACCTCGAGCAGC 59.817 66.667 6.99 0.0 41.08 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.649349 CGTAGAGCGCTGCGTCTC 60.649 66.667 27.15 27.15 43.87 3.36
26 27 2.278271 GTAGAGCGCTGCGTCTCC 60.278 66.667 29.14 17.19 33.20 3.71
27 28 2.750237 TAGAGCGCTGCGTCTCCA 60.750 61.111 29.14 20.20 33.20 3.86
28 29 3.052620 TAGAGCGCTGCGTCTCCAC 62.053 63.158 29.14 13.11 33.20 4.02
34 35 3.991051 CTGCGTCTCCACCACGGT 61.991 66.667 0.00 0.00 37.74 4.83
35 36 3.916392 CTGCGTCTCCACCACGGTC 62.916 68.421 0.00 0.00 37.74 4.79
36 37 4.736896 GCGTCTCCACCACGGTCC 62.737 72.222 0.00 0.00 37.74 4.46
37 38 2.989824 CGTCTCCACCACGGTCCT 60.990 66.667 0.00 0.00 35.57 3.85
38 39 2.971452 GTCTCCACCACGGTCCTC 59.029 66.667 0.00 0.00 35.57 3.71
39 40 1.606889 GTCTCCACCACGGTCCTCT 60.607 63.158 0.00 0.00 35.57 3.69
40 41 1.304217 TCTCCACCACGGTCCTCTC 60.304 63.158 0.00 0.00 35.57 3.20
41 42 1.606601 CTCCACCACGGTCCTCTCA 60.607 63.158 0.00 0.00 35.57 3.27
42 43 0.972983 CTCCACCACGGTCCTCTCAT 60.973 60.000 0.00 0.00 35.57 2.90
43 44 0.970937 TCCACCACGGTCCTCTCATC 60.971 60.000 0.00 0.00 35.57 2.92
44 45 1.257750 CCACCACGGTCCTCTCATCA 61.258 60.000 0.00 0.00 0.00 3.07
45 46 0.608130 CACCACGGTCCTCTCATCAA 59.392 55.000 0.00 0.00 0.00 2.57
46 47 1.208052 CACCACGGTCCTCTCATCAAT 59.792 52.381 0.00 0.00 0.00 2.57
47 48 1.909302 ACCACGGTCCTCTCATCAATT 59.091 47.619 0.00 0.00 0.00 2.32
48 49 2.093447 ACCACGGTCCTCTCATCAATTC 60.093 50.000 0.00 0.00 0.00 2.17
49 50 2.093500 CCACGGTCCTCTCATCAATTCA 60.093 50.000 0.00 0.00 0.00 2.57
50 51 2.932614 CACGGTCCTCTCATCAATTCAC 59.067 50.000 0.00 0.00 0.00 3.18
51 52 2.093447 ACGGTCCTCTCATCAATTCACC 60.093 50.000 0.00 0.00 0.00 4.02
52 53 2.093500 CGGTCCTCTCATCAATTCACCA 60.093 50.000 0.00 0.00 0.00 4.17
53 54 3.619733 CGGTCCTCTCATCAATTCACCAA 60.620 47.826 0.00 0.00 0.00 3.67
54 55 4.335416 GGTCCTCTCATCAATTCACCAAA 58.665 43.478 0.00 0.00 0.00 3.28
55 56 4.397417 GGTCCTCTCATCAATTCACCAAAG 59.603 45.833 0.00 0.00 0.00 2.77
56 57 4.012374 TCCTCTCATCAATTCACCAAAGC 58.988 43.478 0.00 0.00 0.00 3.51
57 58 3.760151 CCTCTCATCAATTCACCAAAGCA 59.240 43.478 0.00 0.00 0.00 3.91
58 59 4.142447 CCTCTCATCAATTCACCAAAGCAG 60.142 45.833 0.00 0.00 0.00 4.24
59 60 3.760151 TCTCATCAATTCACCAAAGCAGG 59.240 43.478 0.00 0.00 0.00 4.85
60 61 3.760151 CTCATCAATTCACCAAAGCAGGA 59.240 43.478 0.00 0.00 0.00 3.86
61 62 4.151121 TCATCAATTCACCAAAGCAGGAA 58.849 39.130 0.00 0.00 0.00 3.36
62 63 4.773674 TCATCAATTCACCAAAGCAGGAAT 59.226 37.500 0.00 0.00 0.00 3.01
63 64 5.951148 TCATCAATTCACCAAAGCAGGAATA 59.049 36.000 0.00 0.00 30.29 1.75
64 65 5.902613 TCAATTCACCAAAGCAGGAATAG 57.097 39.130 0.00 0.00 30.29 1.73
65 66 5.569355 TCAATTCACCAAAGCAGGAATAGA 58.431 37.500 0.00 0.00 30.29 1.98
66 67 5.649395 TCAATTCACCAAAGCAGGAATAGAG 59.351 40.000 0.00 0.00 30.29 2.43
67 68 4.640771 TTCACCAAAGCAGGAATAGAGT 57.359 40.909 0.00 0.00 0.00 3.24
68 69 4.640771 TCACCAAAGCAGGAATAGAGTT 57.359 40.909 0.00 0.00 0.00 3.01
69 70 4.985538 TCACCAAAGCAGGAATAGAGTTT 58.014 39.130 0.00 0.00 0.00 2.66
70 71 5.385198 TCACCAAAGCAGGAATAGAGTTTT 58.615 37.500 0.00 0.00 0.00 2.43
71 72 6.539173 TCACCAAAGCAGGAATAGAGTTTTA 58.461 36.000 0.00 0.00 0.00 1.52
72 73 6.430000 TCACCAAAGCAGGAATAGAGTTTTAC 59.570 38.462 0.00 0.00 0.00 2.01
73 74 5.411669 ACCAAAGCAGGAATAGAGTTTTACG 59.588 40.000 0.00 0.00 0.00 3.18
74 75 5.324697 CAAAGCAGGAATAGAGTTTTACGC 58.675 41.667 0.00 0.00 0.00 4.42
75 76 3.532542 AGCAGGAATAGAGTTTTACGCC 58.467 45.455 0.00 0.00 0.00 5.68
76 77 3.197983 AGCAGGAATAGAGTTTTACGCCT 59.802 43.478 0.00 0.00 0.00 5.52
77 78 3.556365 GCAGGAATAGAGTTTTACGCCTC 59.444 47.826 0.00 0.00 0.00 4.70
78 79 3.797256 CAGGAATAGAGTTTTACGCCTCG 59.203 47.826 0.00 0.00 32.88 4.63
79 80 2.538861 GGAATAGAGTTTTACGCCTCGC 59.461 50.000 0.00 0.00 32.88 5.03
102 103 2.677228 CCCGAACCTGGGCAATCT 59.323 61.111 0.00 0.00 43.70 2.40
103 104 1.750399 CCCGAACCTGGGCAATCTG 60.750 63.158 0.00 0.00 43.70 2.90
104 105 2.409870 CCGAACCTGGGCAATCTGC 61.410 63.158 0.00 0.00 44.08 4.26
114 115 1.154150 GCAATCTGCCTTGTCGTGC 60.154 57.895 0.00 0.00 37.42 5.34
115 116 1.580845 GCAATCTGCCTTGTCGTGCT 61.581 55.000 0.00 0.00 37.42 4.40
116 117 0.167470 CAATCTGCCTTGTCGTGCTG 59.833 55.000 0.00 0.00 0.00 4.41
117 118 1.580845 AATCTGCCTTGTCGTGCTGC 61.581 55.000 0.00 0.00 0.00 5.25
118 119 3.730761 CTGCCTTGTCGTGCTGCC 61.731 66.667 0.00 0.00 0.00 4.85
119 120 4.254709 TGCCTTGTCGTGCTGCCT 62.255 61.111 0.00 0.00 0.00 4.75
120 121 3.426568 GCCTTGTCGTGCTGCCTC 61.427 66.667 0.00 0.00 0.00 4.70
121 122 2.345244 CCTTGTCGTGCTGCCTCT 59.655 61.111 0.00 0.00 0.00 3.69
122 123 2.031516 CCTTGTCGTGCTGCCTCTG 61.032 63.158 0.00 0.00 0.00 3.35
123 124 2.666190 TTGTCGTGCTGCCTCTGC 60.666 61.111 0.00 0.00 38.26 4.26
129 130 3.154787 TGCTGCCTCTGCACTCTT 58.845 55.556 0.00 0.00 44.23 2.85
130 131 1.004080 TGCTGCCTCTGCACTCTTC 60.004 57.895 0.00 0.00 44.23 2.87
131 132 2.099431 GCTGCCTCTGCACTCTTCG 61.099 63.158 0.00 0.00 44.23 3.79
132 133 2.047844 TGCCTCTGCACTCTTCGC 60.048 61.111 0.00 0.00 44.23 4.70
133 134 2.264166 GCCTCTGCACTCTTCGCT 59.736 61.111 0.00 0.00 37.47 4.93
134 135 1.809209 GCCTCTGCACTCTTCGCTC 60.809 63.158 0.00 0.00 37.47 5.03
135 136 1.889454 CCTCTGCACTCTTCGCTCT 59.111 57.895 0.00 0.00 0.00 4.09
136 137 0.246086 CCTCTGCACTCTTCGCTCTT 59.754 55.000 0.00 0.00 0.00 2.85
137 138 1.337635 CCTCTGCACTCTTCGCTCTTT 60.338 52.381 0.00 0.00 0.00 2.52
138 139 1.725706 CTCTGCACTCTTCGCTCTTTG 59.274 52.381 0.00 0.00 0.00 2.77
139 140 1.069204 TCTGCACTCTTCGCTCTTTGT 59.931 47.619 0.00 0.00 0.00 2.83
140 141 1.194098 CTGCACTCTTCGCTCTTTGTG 59.806 52.381 0.00 0.00 0.00 3.33
141 142 0.110464 GCACTCTTCGCTCTTTGTGC 60.110 55.000 0.00 0.00 42.69 4.57
142 143 1.220529 CACTCTTCGCTCTTTGTGCA 58.779 50.000 0.00 0.00 0.00 4.57
143 144 1.599071 CACTCTTCGCTCTTTGTGCAA 59.401 47.619 0.00 0.00 0.00 4.08
144 145 2.225019 CACTCTTCGCTCTTTGTGCAAT 59.775 45.455 0.00 0.00 0.00 3.56
145 146 2.225019 ACTCTTCGCTCTTTGTGCAATG 59.775 45.455 0.00 0.00 0.00 2.82
146 147 2.221169 TCTTCGCTCTTTGTGCAATGT 58.779 42.857 0.00 0.00 0.00 2.71
147 148 2.031769 TCTTCGCTCTTTGTGCAATGTG 60.032 45.455 0.00 0.00 0.00 3.21
148 149 0.040157 TCGCTCTTTGTGCAATGTGC 60.040 50.000 12.02 12.02 45.29 4.57
149 150 0.039798 CGCTCTTTGTGCAATGTGCT 60.040 50.000 16.78 0.00 45.31 4.40
150 151 1.694639 GCTCTTTGTGCAATGTGCTC 58.305 50.000 13.76 0.00 45.31 4.26
151 152 1.268899 GCTCTTTGTGCAATGTGCTCT 59.731 47.619 13.76 0.00 45.31 4.09
152 153 2.288030 GCTCTTTGTGCAATGTGCTCTT 60.288 45.455 13.76 0.00 45.31 2.85
153 154 3.562505 CTCTTTGTGCAATGTGCTCTTC 58.437 45.455 1.43 0.00 45.31 2.87
154 155 2.294233 TCTTTGTGCAATGTGCTCTTCC 59.706 45.455 1.43 0.00 45.31 3.46
155 156 0.961019 TTGTGCAATGTGCTCTTCCC 59.039 50.000 1.43 0.00 45.31 3.97
156 157 0.895100 TGTGCAATGTGCTCTTCCCC 60.895 55.000 1.43 0.00 45.31 4.81
157 158 0.610232 GTGCAATGTGCTCTTCCCCT 60.610 55.000 1.43 0.00 45.31 4.79
158 159 0.112995 TGCAATGTGCTCTTCCCCTT 59.887 50.000 1.43 0.00 45.31 3.95
159 160 0.529378 GCAATGTGCTCTTCCCCTTG 59.471 55.000 0.00 0.00 40.96 3.61
160 161 0.529378 CAATGTGCTCTTCCCCTTGC 59.471 55.000 0.00 0.00 0.00 4.01
161 162 0.613012 AATGTGCTCTTCCCCTTGCC 60.613 55.000 0.00 0.00 0.00 4.52
162 163 2.747855 GTGCTCTTCCCCTTGCCG 60.748 66.667 0.00 0.00 0.00 5.69
163 164 2.927856 TGCTCTTCCCCTTGCCGA 60.928 61.111 0.00 0.00 0.00 5.54
164 165 2.351276 GCTCTTCCCCTTGCCGAA 59.649 61.111 0.00 0.00 0.00 4.30
165 166 2.041115 GCTCTTCCCCTTGCCGAAC 61.041 63.158 0.00 0.00 0.00 3.95
166 167 1.377333 CTCTTCCCCTTGCCGAACC 60.377 63.158 0.00 0.00 0.00 3.62
167 168 2.124507 CTCTTCCCCTTGCCGAACCA 62.125 60.000 0.00 0.00 0.00 3.67
168 169 1.000896 CTTCCCCTTGCCGAACCAT 60.001 57.895 0.00 0.00 0.00 3.55
169 170 0.254747 CTTCCCCTTGCCGAACCATA 59.745 55.000 0.00 0.00 0.00 2.74
170 171 0.699399 TTCCCCTTGCCGAACCATAA 59.301 50.000 0.00 0.00 0.00 1.90
171 172 0.254747 TCCCCTTGCCGAACCATAAG 59.745 55.000 0.00 0.00 0.00 1.73
172 173 0.254747 CCCCTTGCCGAACCATAAGA 59.745 55.000 0.00 0.00 0.00 2.10
173 174 1.668419 CCCTTGCCGAACCATAAGAG 58.332 55.000 0.00 0.00 0.00 2.85
174 175 1.668419 CCTTGCCGAACCATAAGAGG 58.332 55.000 0.00 0.00 0.00 3.69
176 177 0.393808 TTGCCGAACCATAAGAGGCC 60.394 55.000 0.00 0.00 46.67 5.19
177 178 1.887707 GCCGAACCATAAGAGGCCG 60.888 63.158 0.00 0.00 41.81 6.13
178 179 1.820581 CCGAACCATAAGAGGCCGA 59.179 57.895 0.00 0.00 32.10 5.54
179 180 0.393077 CCGAACCATAAGAGGCCGAT 59.607 55.000 0.00 0.00 32.10 4.18
180 181 1.502231 CGAACCATAAGAGGCCGATG 58.498 55.000 0.00 0.00 32.10 3.84
181 182 1.873903 CGAACCATAAGAGGCCGATGG 60.874 57.143 20.86 20.86 44.84 3.51
191 192 3.807368 GCCGATGGCCCTATAGGT 58.193 61.111 17.72 0.00 44.06 3.08
192 193 1.296715 GCCGATGGCCCTATAGGTG 59.703 63.158 17.72 10.05 44.06 4.00
193 194 1.983224 CCGATGGCCCTATAGGTGG 59.017 63.158 17.72 4.40 38.26 4.61
198 199 2.426023 GCCCTATAGGTGGCCGTG 59.574 66.667 17.72 1.47 41.97 4.94
199 200 3.148084 CCCTATAGGTGGCCGTGG 58.852 66.667 17.72 0.00 0.00 4.94
200 201 1.764854 CCCTATAGGTGGCCGTGGT 60.765 63.158 17.72 0.00 0.00 4.16
201 202 1.342672 CCCTATAGGTGGCCGTGGTT 61.343 60.000 17.72 0.00 0.00 3.67
202 203 0.544697 CCTATAGGTGGCCGTGGTTT 59.455 55.000 10.96 0.00 0.00 3.27
203 204 1.474498 CCTATAGGTGGCCGTGGTTTC 60.474 57.143 10.96 0.00 0.00 2.78
204 205 0.542805 TATAGGTGGCCGTGGTTTCC 59.457 55.000 0.00 0.00 0.00 3.13
205 206 2.206182 ATAGGTGGCCGTGGTTTCCC 62.206 60.000 0.00 0.00 0.00 3.97
206 207 4.589675 GGTGGCCGTGGTTTCCCA 62.590 66.667 0.00 0.00 38.87 4.37
216 217 2.577606 TGGTTTCCCACGACAATGAT 57.422 45.000 0.00 0.00 35.17 2.45
217 218 2.432444 TGGTTTCCCACGACAATGATC 58.568 47.619 0.00 0.00 35.17 2.92
218 219 2.224646 TGGTTTCCCACGACAATGATCA 60.225 45.455 0.00 0.00 35.17 2.92
219 220 2.817258 GGTTTCCCACGACAATGATCAA 59.183 45.455 0.00 0.00 0.00 2.57
220 221 3.443681 GGTTTCCCACGACAATGATCAAT 59.556 43.478 0.00 0.00 0.00 2.57
221 222 4.438744 GGTTTCCCACGACAATGATCAATC 60.439 45.833 0.00 0.00 0.00 2.67
222 223 3.912496 TCCCACGACAATGATCAATCT 57.088 42.857 0.00 0.00 0.00 2.40
223 224 3.797039 TCCCACGACAATGATCAATCTC 58.203 45.455 0.00 0.00 0.00 2.75
224 225 3.197549 TCCCACGACAATGATCAATCTCA 59.802 43.478 0.00 0.00 0.00 3.27
225 226 4.132336 CCCACGACAATGATCAATCTCAT 58.868 43.478 0.00 0.00 37.47 2.90
226 227 4.212847 CCCACGACAATGATCAATCTCATC 59.787 45.833 0.00 0.00 34.79 2.92
227 228 5.055144 CCACGACAATGATCAATCTCATCT 58.945 41.667 0.00 0.00 34.79 2.90
228 229 5.177142 CCACGACAATGATCAATCTCATCTC 59.823 44.000 0.00 0.00 34.79 2.75
229 230 5.177142 CACGACAATGATCAATCTCATCTCC 59.823 44.000 0.00 0.00 34.79 3.71
230 231 5.070180 ACGACAATGATCAATCTCATCTCCT 59.930 40.000 0.00 0.00 34.79 3.69
231 232 5.990386 CGACAATGATCAATCTCATCTCCTT 59.010 40.000 0.00 0.00 34.79 3.36
232 233 7.150640 CGACAATGATCAATCTCATCTCCTTA 58.849 38.462 0.00 0.00 34.79 2.69
233 234 7.818446 CGACAATGATCAATCTCATCTCCTTAT 59.182 37.037 0.00 0.00 34.79 1.73
234 235 8.850007 ACAATGATCAATCTCATCTCCTTATG 57.150 34.615 0.00 0.00 34.79 1.90
235 236 7.883833 ACAATGATCAATCTCATCTCCTTATGG 59.116 37.037 0.00 0.00 34.79 2.74
236 237 7.571071 ATGATCAATCTCATCTCCTTATGGT 57.429 36.000 0.00 0.00 29.85 3.55
237 238 8.676397 ATGATCAATCTCATCTCCTTATGGTA 57.324 34.615 0.00 0.00 29.85 3.25
238 239 8.131847 TGATCAATCTCATCTCCTTATGGTAG 57.868 38.462 0.00 0.00 34.23 3.18
239 240 7.952368 TGATCAATCTCATCTCCTTATGGTAGA 59.048 37.037 0.00 0.00 34.23 2.59
240 241 8.914213 ATCAATCTCATCTCCTTATGGTAGAT 57.086 34.615 0.00 0.29 33.53 1.98
241 242 8.359875 TCAATCTCATCTCCTTATGGTAGATC 57.640 38.462 6.63 0.00 32.07 2.75
242 243 7.952368 TCAATCTCATCTCCTTATGGTAGATCA 59.048 37.037 0.00 0.00 32.07 2.92
243 244 7.716799 ATCTCATCTCCTTATGGTAGATCAC 57.283 40.000 0.00 0.00 32.07 3.06
244 245 6.857848 TCTCATCTCCTTATGGTAGATCACT 58.142 40.000 0.00 0.00 32.07 3.41
245 246 6.945435 TCTCATCTCCTTATGGTAGATCACTC 59.055 42.308 0.00 0.00 32.07 3.51
246 247 6.614657 TCATCTCCTTATGGTAGATCACTCA 58.385 40.000 0.00 0.00 32.07 3.41
247 248 7.244558 TCATCTCCTTATGGTAGATCACTCAT 58.755 38.462 0.00 0.00 32.07 2.90
248 249 7.732140 TCATCTCCTTATGGTAGATCACTCATT 59.268 37.037 0.00 0.00 32.07 2.57
249 250 7.295322 TCTCCTTATGGTAGATCACTCATTG 57.705 40.000 0.00 0.00 34.23 2.82
250 251 6.841229 TCTCCTTATGGTAGATCACTCATTGT 59.159 38.462 0.00 0.00 34.23 2.71
251 252 6.820335 TCCTTATGGTAGATCACTCATTGTG 58.180 40.000 0.00 0.00 40.12 3.33
252 253 6.611236 TCCTTATGGTAGATCACTCATTGTGA 59.389 38.462 0.00 0.86 45.69 3.58
253 254 7.125659 TCCTTATGGTAGATCACTCATTGTGAA 59.874 37.037 2.55 0.00 45.24 3.18
266 267 7.485418 ACTCATTGTGAATACGTAAACAACA 57.515 32.000 18.41 10.42 35.51 3.33
267 268 7.921787 ACTCATTGTGAATACGTAAACAACAA 58.078 30.769 18.41 16.52 35.51 2.83
268 269 8.067784 ACTCATTGTGAATACGTAAACAACAAG 58.932 33.333 18.41 18.58 35.51 3.16
269 270 8.144155 TCATTGTGAATACGTAAACAACAAGA 57.856 30.769 18.41 14.80 35.51 3.02
270 271 8.065407 TCATTGTGAATACGTAAACAACAAGAC 58.935 33.333 18.41 3.90 35.51 3.01
271 272 6.289745 TGTGAATACGTAAACAACAAGACC 57.710 37.500 0.00 0.00 0.00 3.85
272 273 5.816258 TGTGAATACGTAAACAACAAGACCA 59.184 36.000 0.00 0.00 0.00 4.02
273 274 6.131389 GTGAATACGTAAACAACAAGACCAC 58.869 40.000 0.00 0.00 0.00 4.16
274 275 5.236911 TGAATACGTAAACAACAAGACCACC 59.763 40.000 0.00 0.00 0.00 4.61
275 276 2.988570 ACGTAAACAACAAGACCACCA 58.011 42.857 0.00 0.00 0.00 4.17
276 277 3.547746 ACGTAAACAACAAGACCACCAT 58.452 40.909 0.00 0.00 0.00 3.55
277 278 3.949113 ACGTAAACAACAAGACCACCATT 59.051 39.130 0.00 0.00 0.00 3.16
278 279 5.124645 ACGTAAACAACAAGACCACCATTA 58.875 37.500 0.00 0.00 0.00 1.90
279 280 5.237779 ACGTAAACAACAAGACCACCATTAG 59.762 40.000 0.00 0.00 0.00 1.73
280 281 4.584327 AAACAACAAGACCACCATTAGC 57.416 40.909 0.00 0.00 0.00 3.09
281 282 2.514803 ACAACAAGACCACCATTAGCC 58.485 47.619 0.00 0.00 0.00 3.93
282 283 2.158534 ACAACAAGACCACCATTAGCCA 60.159 45.455 0.00 0.00 0.00 4.75
283 284 3.091545 CAACAAGACCACCATTAGCCAT 58.908 45.455 0.00 0.00 0.00 4.40
284 285 2.726821 ACAAGACCACCATTAGCCATG 58.273 47.619 0.00 0.00 0.00 3.66
290 291 3.297620 CCATTAGCCATGGCCGCC 61.298 66.667 33.14 5.99 46.59 6.13
291 292 2.519063 CATTAGCCATGGCCGCCA 60.519 61.111 33.14 16.17 43.17 5.69
292 293 2.126596 CATTAGCCATGGCCGCCAA 61.127 57.895 33.14 21.03 43.17 4.52
293 294 1.829533 ATTAGCCATGGCCGCCAAG 60.830 57.895 33.14 12.51 43.17 3.61
294 295 2.283143 ATTAGCCATGGCCGCCAAGA 62.283 55.000 33.14 11.49 43.17 3.02
295 296 2.491770 TTAGCCATGGCCGCCAAGAA 62.492 55.000 33.14 12.70 43.17 2.52
296 297 2.491770 TAGCCATGGCCGCCAAGAAA 62.492 55.000 33.14 4.77 43.17 2.52
297 298 2.941616 GCCATGGCCGCCAAGAAAA 61.942 57.895 27.24 0.00 36.95 2.29
298 299 1.670590 CCATGGCCGCCAAGAAAAA 59.329 52.632 18.00 0.00 36.95 1.94
314 315 2.952273 AAAAAGCGCCAACACGAAC 58.048 47.368 2.29 0.00 34.06 3.95
315 316 0.454196 AAAAAGCGCCAACACGAACT 59.546 45.000 2.29 0.00 34.06 3.01
316 317 0.248458 AAAAGCGCCAACACGAACTG 60.248 50.000 2.29 0.00 34.06 3.16
317 318 1.092921 AAAGCGCCAACACGAACTGA 61.093 50.000 2.29 0.00 34.06 3.41
318 319 0.884704 AAGCGCCAACACGAACTGAT 60.885 50.000 2.29 0.00 34.06 2.90
319 320 0.037697 AGCGCCAACACGAACTGATA 60.038 50.000 2.29 0.00 34.06 2.15
320 321 0.094730 GCGCCAACACGAACTGATAC 59.905 55.000 0.00 0.00 34.06 2.24
321 322 1.424403 CGCCAACACGAACTGATACA 58.576 50.000 0.00 0.00 34.06 2.29
322 323 1.795872 CGCCAACACGAACTGATACAA 59.204 47.619 0.00 0.00 34.06 2.41
323 324 2.159841 CGCCAACACGAACTGATACAAG 60.160 50.000 0.00 0.00 34.06 3.16
324 325 2.412847 GCCAACACGAACTGATACAAGC 60.413 50.000 0.00 0.00 0.00 4.01
325 326 2.159841 CCAACACGAACTGATACAAGCG 60.160 50.000 0.00 0.00 0.00 4.68
326 327 1.068474 ACACGAACTGATACAAGCGC 58.932 50.000 0.00 0.00 0.00 5.92
327 328 0.023732 CACGAACTGATACAAGCGCG 59.976 55.000 0.00 0.00 0.00 6.86
328 329 1.013323 CGAACTGATACAAGCGCGC 60.013 57.895 26.66 26.66 0.00 6.86
329 330 1.348594 GAACTGATACAAGCGCGCC 59.651 57.895 30.33 12.12 0.00 6.53
330 331 2.348140 GAACTGATACAAGCGCGCCG 62.348 60.000 30.33 22.35 0.00 6.46
341 342 2.646553 CGCGCCGCCGTTTAATTC 60.647 61.111 2.28 0.00 36.67 2.17
342 343 2.789249 GCGCCGCCGTTTAATTCT 59.211 55.556 0.00 0.00 36.67 2.40
343 344 1.582680 GCGCCGCCGTTTAATTCTG 60.583 57.895 0.00 0.00 36.67 3.02
344 345 1.582680 CGCCGCCGTTTAATTCTGC 60.583 57.895 0.00 0.00 0.00 4.26
345 346 1.226575 GCCGCCGTTTAATTCTGCC 60.227 57.895 0.00 0.00 0.00 4.85
346 347 1.061887 CCGCCGTTTAATTCTGCCG 59.938 57.895 0.00 0.00 0.00 5.69
347 348 1.641123 CCGCCGTTTAATTCTGCCGT 61.641 55.000 0.00 0.00 0.00 5.68
348 349 0.167251 CGCCGTTTAATTCTGCCGTT 59.833 50.000 0.00 0.00 0.00 4.44
349 350 1.613270 GCCGTTTAATTCTGCCGTTG 58.387 50.000 0.00 0.00 0.00 4.10
350 351 1.613270 CCGTTTAATTCTGCCGTTGC 58.387 50.000 0.00 0.00 38.26 4.17
359 360 3.258931 TGCCGTTGCAATACACGG 58.741 55.556 20.75 20.75 46.66 4.94
360 361 2.328856 TGCCGTTGCAATACACGGG 61.329 57.895 24.79 11.21 46.66 5.28
361 362 2.483288 CCGTTGCAATACACGGGC 59.517 61.111 17.99 0.00 38.50 6.13
362 363 2.328856 CCGTTGCAATACACGGGCA 61.329 57.895 17.99 0.00 38.50 5.36
363 364 1.154301 CGTTGCAATACACGGGCAC 60.154 57.895 0.59 0.00 37.26 5.01
364 365 1.846849 CGTTGCAATACACGGGCACA 61.847 55.000 0.59 0.00 37.26 4.57
365 366 0.525761 GTTGCAATACACGGGCACAT 59.474 50.000 0.59 0.00 37.26 3.21
366 367 0.525311 TTGCAATACACGGGCACATG 59.475 50.000 0.00 0.00 37.26 3.21
367 368 0.607762 TGCAATACACGGGCACATGT 60.608 50.000 0.00 0.00 33.69 3.21
368 369 0.179166 GCAATACACGGGCACATGTG 60.179 55.000 21.83 21.83 41.12 3.21
370 371 1.539388 CAATACACGGGCACATGTGTT 59.461 47.619 26.01 7.89 44.87 3.32
371 372 2.744741 CAATACACGGGCACATGTGTTA 59.255 45.455 26.01 9.20 44.87 2.41
372 373 2.087501 TACACGGGCACATGTGTTAG 57.912 50.000 26.01 18.49 44.87 2.34
373 374 0.107831 ACACGGGCACATGTGTTAGT 59.892 50.000 26.01 19.08 44.87 2.24
374 375 1.345089 ACACGGGCACATGTGTTAGTA 59.655 47.619 26.01 0.00 44.87 1.82
375 376 2.224329 ACACGGGCACATGTGTTAGTAA 60.224 45.455 26.01 0.00 44.87 2.24
376 377 2.809119 CACGGGCACATGTGTTAGTAAA 59.191 45.455 26.01 0.00 32.71 2.01
377 378 3.251245 CACGGGCACATGTGTTAGTAAAA 59.749 43.478 26.01 0.00 32.71 1.52
378 379 4.076394 ACGGGCACATGTGTTAGTAAAAT 58.924 39.130 26.01 1.28 0.00 1.82
379 380 5.122554 CACGGGCACATGTGTTAGTAAAATA 59.877 40.000 26.01 0.00 32.71 1.40
380 381 5.706369 ACGGGCACATGTGTTAGTAAAATAA 59.294 36.000 26.01 0.00 0.00 1.40
381 382 6.207025 ACGGGCACATGTGTTAGTAAAATAAA 59.793 34.615 26.01 0.00 0.00 1.40
382 383 7.085116 CGGGCACATGTGTTAGTAAAATAAAA 58.915 34.615 26.01 0.00 0.00 1.52
383 384 7.757624 CGGGCACATGTGTTAGTAAAATAAAAT 59.242 33.333 26.01 0.00 0.00 1.82
400 401 6.657836 ATAAAATAGTGAAAAGTCGGACCG 57.342 37.500 7.84 7.84 0.00 4.79
401 402 3.947910 AATAGTGAAAAGTCGGACCGA 57.052 42.857 13.88 13.88 0.00 4.69
402 403 3.505464 ATAGTGAAAAGTCGGACCGAG 57.495 47.619 18.98 0.00 36.23 4.63
403 404 0.319641 AGTGAAAAGTCGGACCGAGC 60.320 55.000 18.98 12.36 36.23 5.03
404 405 1.372499 TGAAAAGTCGGACCGAGCG 60.372 57.895 18.98 0.00 36.23 5.03
405 406 1.372623 GAAAAGTCGGACCGAGCGT 60.373 57.895 18.98 7.91 36.23 5.07
406 407 1.615107 GAAAAGTCGGACCGAGCGTG 61.615 60.000 18.98 0.00 36.23 5.34
407 408 2.359570 AAAAGTCGGACCGAGCGTGT 62.360 55.000 18.98 3.12 36.23 4.49
408 409 1.518056 AAAGTCGGACCGAGCGTGTA 61.518 55.000 18.98 0.00 36.23 2.90
409 410 2.192608 AAGTCGGACCGAGCGTGTAC 62.193 60.000 18.98 3.95 36.23 2.90
410 411 2.669229 TCGGACCGAGCGTGTACA 60.669 61.111 13.88 0.00 0.00 2.90
411 412 2.042259 TCGGACCGAGCGTGTACAT 61.042 57.895 13.88 0.00 0.00 2.29
412 413 1.872234 CGGACCGAGCGTGTACATG 60.872 63.158 8.64 10.89 0.00 3.21
413 414 2.165301 GGACCGAGCGTGTACATGC 61.165 63.158 28.92 28.92 43.42 4.06
414 415 1.445410 GACCGAGCGTGTACATGCA 60.445 57.895 35.00 0.00 45.42 3.96
415 416 0.806102 GACCGAGCGTGTACATGCAT 60.806 55.000 35.00 22.66 45.42 3.96
416 417 0.458260 ACCGAGCGTGTACATGCATA 59.542 50.000 35.00 0.00 45.42 3.14
417 418 0.852777 CCGAGCGTGTACATGCATAC 59.147 55.000 35.00 24.80 45.42 2.39
418 419 0.852777 CGAGCGTGTACATGCATACC 59.147 55.000 35.00 21.50 45.42 2.73
419 420 1.536072 CGAGCGTGTACATGCATACCT 60.536 52.381 35.00 18.71 45.42 3.08
420 421 2.550978 GAGCGTGTACATGCATACCTT 58.449 47.619 35.00 18.03 45.42 3.50
421 422 2.540101 GAGCGTGTACATGCATACCTTC 59.460 50.000 35.00 21.66 45.42 3.46
422 423 1.257936 GCGTGTACATGCATACCTTCG 59.742 52.381 30.60 12.23 42.66 3.79
423 424 1.858458 CGTGTACATGCATACCTTCGG 59.142 52.381 0.00 0.00 0.00 4.30
424 425 2.210116 GTGTACATGCATACCTTCGGG 58.790 52.381 0.00 0.00 41.87 5.14
501 507 1.648504 CGAACACCGTTCCTATTCCC 58.351 55.000 1.47 0.00 0.00 3.97
512 518 4.849310 TATTCCCACGCGCCAGCC 62.849 66.667 5.73 0.00 41.18 4.85
540 546 1.670406 GTGTGGAGCAGAGCCAGTG 60.670 63.158 0.00 0.00 35.77 3.66
543 549 1.534959 TGGAGCAGAGCCAGTGAGT 60.535 57.895 0.00 0.00 0.00 3.41
691 697 2.883253 GCGTGCGGAGAGAGAAGC 60.883 66.667 0.00 0.00 0.00 3.86
692 698 2.202676 CGTGCGGAGAGAGAAGCC 60.203 66.667 0.00 0.00 0.00 4.35
694 700 1.153667 GTGCGGAGAGAGAAGCCAG 60.154 63.158 0.00 0.00 0.00 4.85
695 701 2.202864 GCGGAGAGAGAAGCCAGC 60.203 66.667 0.00 0.00 0.00 4.85
699 718 3.349481 GAGAGAGAAGCCAGCGCGT 62.349 63.158 8.43 0.00 41.18 6.01
794 836 2.832201 GCGGTAGCTCGTAGGGGT 60.832 66.667 0.00 0.00 41.01 4.95
797 839 1.513836 CGGTAGCTCGTAGGGGTAGC 61.514 65.000 0.00 0.00 36.48 3.58
1700 1775 2.595463 GTCCTGGCAGCAACAGCA 60.595 61.111 9.56 0.00 34.65 4.41
2139 2217 2.504244 CTCGCGTCGGAGAACCAC 60.504 66.667 5.77 0.00 39.69 4.16
2273 2357 6.014327 CCCCCTTATTACCATTGATTGATTGG 60.014 42.308 0.00 0.00 36.56 3.16
2276 2360 8.143835 CCCTTATTACCATTGATTGATTGGTTC 58.856 37.037 0.00 0.00 40.87 3.62
2320 2408 0.809241 TGGCTGCAAACTTTTTGGCG 60.809 50.000 0.50 0.00 0.00 5.69
2358 2446 2.650322 GTGTCCTTCAAAAGTCCCACA 58.350 47.619 0.00 0.00 0.00 4.17
2359 2447 2.618709 GTGTCCTTCAAAAGTCCCACAG 59.381 50.000 0.00 0.00 0.00 3.66
2548 2649 3.118665 GCATTTTGCATTGTCCCTGGTAT 60.119 43.478 0.00 0.00 44.26 2.73
2549 2650 4.099266 GCATTTTGCATTGTCCCTGGTATA 59.901 41.667 0.00 0.00 44.26 1.47
2551 2652 6.686126 GCATTTTGCATTGTCCCTGGTATAAT 60.686 38.462 0.00 0.00 44.26 1.28
2553 2654 6.952773 TTTGCATTGTCCCTGGTATAATAC 57.047 37.500 0.00 0.00 0.00 1.89
2554 2655 5.638530 TGCATTGTCCCTGGTATAATACA 57.361 39.130 0.00 0.00 0.00 2.29
2555 2656 5.620206 TGCATTGTCCCTGGTATAATACAG 58.380 41.667 0.00 0.00 34.54 2.74
2556 2657 5.131977 TGCATTGTCCCTGGTATAATACAGT 59.868 40.000 0.00 0.00 32.90 3.55
2557 2658 6.327887 TGCATTGTCCCTGGTATAATACAGTA 59.672 38.462 0.00 0.00 32.90 2.74
2620 2722 1.686587 GCTAGTTTTGGGCACAACCTT 59.313 47.619 0.00 0.00 39.10 3.50
2682 2789 7.630924 ACTGTTCATATTTATCTTTGCTACGC 58.369 34.615 0.00 0.00 0.00 4.42
2694 2801 4.332543 TCTTTGCTACGCCACTGATATTTG 59.667 41.667 0.00 0.00 0.00 2.32
2715 2824 6.699895 TTGTCGTCATACAACTATCACAAC 57.300 37.500 0.00 0.00 34.50 3.32
2718 2827 3.550275 CGTCATACAACTATCACAACGGG 59.450 47.826 0.00 0.00 0.00 5.28
2756 2865 9.405587 GCTTTAGCAAAACTGTTATTGAATACA 57.594 29.630 15.01 0.00 41.59 2.29
2772 2881 0.594602 TACAACAGTCGACAGGTCCG 59.405 55.000 19.50 12.12 0.00 4.79
2821 2931 2.290071 GGGCTGCAGTAACCTAGACAAA 60.290 50.000 16.64 0.00 0.00 2.83
2845 2955 2.420022 CCCGCTCAGTCTTATTGGTTTG 59.580 50.000 0.00 0.00 0.00 2.93
2927 3040 6.288294 AGTGACTAAGTCTACATGTGCAAAA 58.712 36.000 9.11 0.00 33.15 2.44
2928 3041 6.765989 AGTGACTAAGTCTACATGTGCAAAAA 59.234 34.615 9.11 0.00 33.15 1.94
2990 3139 9.282247 CATAAAACATAGTTTCAGATGTGCTTC 57.718 33.333 0.00 0.00 36.42 3.86
2991 3140 6.882610 AAACATAGTTTCAGATGTGCTTCA 57.117 33.333 0.00 0.00 36.42 3.02
2992 3141 5.869753 ACATAGTTTCAGATGTGCTTCAC 57.130 39.130 0.00 0.00 34.98 3.18
3121 3275 7.436673 CCATCAGTAGATACAAAAGCAGTAGAC 59.563 40.741 0.00 0.00 31.88 2.59
3122 3276 7.462571 TCAGTAGATACAAAAGCAGTAGACA 57.537 36.000 0.00 0.00 0.00 3.41
3213 3377 6.482524 ACAGAGGTGTCAAGTAGTAGTATCA 58.517 40.000 0.00 0.00 26.76 2.15
3214 3378 6.600032 ACAGAGGTGTCAAGTAGTAGTATCAG 59.400 42.308 0.00 0.00 26.76 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.278271 GGAGACGCAGCGCTCTAC 60.278 66.667 27.20 20.34 33.26 2.59
10 11 2.750237 TGGAGACGCAGCGCTCTA 60.750 61.111 27.20 22.47 33.26 2.43
11 12 4.427661 GTGGAGACGCAGCGCTCT 62.428 66.667 27.20 22.42 41.67 4.09
17 18 3.916392 GACCGTGGTGGAGACGCAG 62.916 68.421 0.00 0.00 44.70 5.18
18 19 3.986006 GACCGTGGTGGAGACGCA 61.986 66.667 0.00 0.00 44.70 5.24
19 20 4.736896 GGACCGTGGTGGAGACGC 62.737 72.222 0.00 0.00 42.00 5.19
20 21 2.989824 AGGACCGTGGTGGAGACG 60.990 66.667 0.00 0.00 42.00 4.18
21 22 1.596895 GAGAGGACCGTGGTGGAGAC 61.597 65.000 0.00 0.00 42.00 3.36
22 23 1.304217 GAGAGGACCGTGGTGGAGA 60.304 63.158 0.00 0.00 42.00 3.71
23 24 0.972983 ATGAGAGGACCGTGGTGGAG 60.973 60.000 0.00 0.00 42.00 3.86
24 25 0.970937 GATGAGAGGACCGTGGTGGA 60.971 60.000 0.00 0.00 42.00 4.02
25 26 1.257750 TGATGAGAGGACCGTGGTGG 61.258 60.000 0.00 0.00 46.41 4.61
26 27 0.608130 TTGATGAGAGGACCGTGGTG 59.392 55.000 0.00 0.00 0.00 4.17
27 28 1.573108 ATTGATGAGAGGACCGTGGT 58.427 50.000 0.00 0.00 0.00 4.16
28 29 2.093500 TGAATTGATGAGAGGACCGTGG 60.093 50.000 0.00 0.00 0.00 4.94
29 30 2.932614 GTGAATTGATGAGAGGACCGTG 59.067 50.000 0.00 0.00 0.00 4.94
30 31 2.093447 GGTGAATTGATGAGAGGACCGT 60.093 50.000 0.00 0.00 0.00 4.83
31 32 2.093500 TGGTGAATTGATGAGAGGACCG 60.093 50.000 0.00 0.00 0.00 4.79
32 33 3.634397 TGGTGAATTGATGAGAGGACC 57.366 47.619 0.00 0.00 0.00 4.46
33 34 4.142513 GCTTTGGTGAATTGATGAGAGGAC 60.143 45.833 0.00 0.00 0.00 3.85
34 35 4.012374 GCTTTGGTGAATTGATGAGAGGA 58.988 43.478 0.00 0.00 0.00 3.71
35 36 3.760151 TGCTTTGGTGAATTGATGAGAGG 59.240 43.478 0.00 0.00 0.00 3.69
36 37 4.142447 CCTGCTTTGGTGAATTGATGAGAG 60.142 45.833 0.00 0.00 0.00 3.20
37 38 3.760151 CCTGCTTTGGTGAATTGATGAGA 59.240 43.478 0.00 0.00 0.00 3.27
38 39 3.760151 TCCTGCTTTGGTGAATTGATGAG 59.240 43.478 0.00 0.00 0.00 2.90
39 40 3.765381 TCCTGCTTTGGTGAATTGATGA 58.235 40.909 0.00 0.00 0.00 2.92
40 41 4.524316 TTCCTGCTTTGGTGAATTGATG 57.476 40.909 0.00 0.00 0.00 3.07
41 42 6.189859 TCTATTCCTGCTTTGGTGAATTGAT 58.810 36.000 0.00 0.00 28.73 2.57
42 43 5.569355 TCTATTCCTGCTTTGGTGAATTGA 58.431 37.500 0.00 0.00 30.37 2.57
43 44 5.416952 ACTCTATTCCTGCTTTGGTGAATTG 59.583 40.000 0.00 0.00 0.00 2.32
44 45 5.574188 ACTCTATTCCTGCTTTGGTGAATT 58.426 37.500 0.00 0.00 0.00 2.17
45 46 5.184892 ACTCTATTCCTGCTTTGGTGAAT 57.815 39.130 0.00 0.00 0.00 2.57
46 47 4.640771 ACTCTATTCCTGCTTTGGTGAA 57.359 40.909 0.00 0.00 0.00 3.18
47 48 4.640771 AACTCTATTCCTGCTTTGGTGA 57.359 40.909 0.00 0.00 0.00 4.02
48 49 5.712152 AAAACTCTATTCCTGCTTTGGTG 57.288 39.130 0.00 0.00 0.00 4.17
49 50 5.411669 CGTAAAACTCTATTCCTGCTTTGGT 59.588 40.000 0.00 0.00 0.00 3.67
50 51 5.673818 GCGTAAAACTCTATTCCTGCTTTGG 60.674 44.000 0.00 0.00 0.00 3.28
51 52 5.324697 GCGTAAAACTCTATTCCTGCTTTG 58.675 41.667 0.00 0.00 0.00 2.77
52 53 4.395231 GGCGTAAAACTCTATTCCTGCTTT 59.605 41.667 0.00 0.00 0.00 3.51
53 54 3.939592 GGCGTAAAACTCTATTCCTGCTT 59.060 43.478 0.00 0.00 0.00 3.91
54 55 3.197983 AGGCGTAAAACTCTATTCCTGCT 59.802 43.478 0.00 0.00 0.00 4.24
55 56 3.532542 AGGCGTAAAACTCTATTCCTGC 58.467 45.455 0.00 0.00 0.00 4.85
56 57 3.797256 CGAGGCGTAAAACTCTATTCCTG 59.203 47.826 0.00 0.00 0.00 3.86
57 58 3.737355 GCGAGGCGTAAAACTCTATTCCT 60.737 47.826 0.00 0.00 0.00 3.36
58 59 2.538861 GCGAGGCGTAAAACTCTATTCC 59.461 50.000 0.00 0.00 0.00 3.01
59 60 3.838025 GCGAGGCGTAAAACTCTATTC 57.162 47.619 0.00 0.00 0.00 1.75
86 87 2.409870 GCAGATTGCCCAGGTTCGG 61.410 63.158 0.00 0.00 37.42 4.30
87 88 3.190878 GCAGATTGCCCAGGTTCG 58.809 61.111 0.00 0.00 37.42 3.95
96 97 1.154150 GCACGACAAGGCAGATTGC 60.154 57.895 0.00 0.00 44.08 3.56
97 98 0.167470 CAGCACGACAAGGCAGATTG 59.833 55.000 0.00 0.00 36.22 2.67
98 99 1.580845 GCAGCACGACAAGGCAGATT 61.581 55.000 0.00 0.00 0.00 2.40
99 100 2.037136 GCAGCACGACAAGGCAGAT 61.037 57.895 0.00 0.00 0.00 2.90
100 101 2.666190 GCAGCACGACAAGGCAGA 60.666 61.111 0.00 0.00 0.00 4.26
101 102 3.730761 GGCAGCACGACAAGGCAG 61.731 66.667 0.00 0.00 0.00 4.85
102 103 4.254709 AGGCAGCACGACAAGGCA 62.255 61.111 0.00 0.00 0.00 4.75
103 104 3.426568 GAGGCAGCACGACAAGGC 61.427 66.667 0.00 0.00 0.00 4.35
104 105 2.031516 CAGAGGCAGCACGACAAGG 61.032 63.158 0.00 0.00 0.00 3.61
105 106 2.675056 GCAGAGGCAGCACGACAAG 61.675 63.158 0.00 0.00 40.72 3.16
106 107 2.666190 GCAGAGGCAGCACGACAA 60.666 61.111 0.00 0.00 40.72 3.18
116 117 1.809209 GAGCGAAGAGTGCAGAGGC 60.809 63.158 0.00 0.00 41.68 4.70
117 118 0.246086 AAGAGCGAAGAGTGCAGAGG 59.754 55.000 0.00 0.00 33.85 3.69
118 119 1.725706 CAAAGAGCGAAGAGTGCAGAG 59.274 52.381 0.00 0.00 33.85 3.35
119 120 1.069204 ACAAAGAGCGAAGAGTGCAGA 59.931 47.619 0.00 0.00 33.85 4.26
120 121 1.194098 CACAAAGAGCGAAGAGTGCAG 59.806 52.381 0.00 0.00 33.85 4.41
121 122 1.220529 CACAAAGAGCGAAGAGTGCA 58.779 50.000 0.00 0.00 33.85 4.57
122 123 0.110464 GCACAAAGAGCGAAGAGTGC 60.110 55.000 10.02 10.02 44.31 4.40
123 124 1.220529 TGCACAAAGAGCGAAGAGTG 58.779 50.000 0.00 0.00 33.85 3.51
124 125 1.953559 TTGCACAAAGAGCGAAGAGT 58.046 45.000 0.00 0.00 33.85 3.24
125 126 2.225019 ACATTGCACAAAGAGCGAAGAG 59.775 45.455 0.00 0.00 33.85 2.85
126 127 2.031769 CACATTGCACAAAGAGCGAAGA 60.032 45.455 0.00 0.00 33.85 2.87
127 128 2.313234 CACATTGCACAAAGAGCGAAG 58.687 47.619 0.00 0.00 33.85 3.79
128 129 1.600164 GCACATTGCACAAAGAGCGAA 60.600 47.619 0.00 0.00 44.26 4.70
129 130 0.040157 GCACATTGCACAAAGAGCGA 60.040 50.000 0.00 0.00 44.26 4.93
130 131 2.427360 GCACATTGCACAAAGAGCG 58.573 52.632 0.00 0.00 44.26 5.03
140 141 0.529378 CAAGGGGAAGAGCACATTGC 59.471 55.000 0.00 0.00 45.46 3.56
141 142 0.529378 GCAAGGGGAAGAGCACATTG 59.471 55.000 0.00 0.00 44.21 2.82
142 143 0.613012 GGCAAGGGGAAGAGCACATT 60.613 55.000 0.00 0.00 0.00 2.71
143 144 1.000396 GGCAAGGGGAAGAGCACAT 60.000 57.895 0.00 0.00 0.00 3.21
144 145 2.436109 GGCAAGGGGAAGAGCACA 59.564 61.111 0.00 0.00 0.00 4.57
145 146 2.747855 CGGCAAGGGGAAGAGCAC 60.748 66.667 0.00 0.00 0.00 4.40
146 147 2.525124 TTCGGCAAGGGGAAGAGCA 61.525 57.895 0.00 0.00 0.00 4.26
147 148 2.041115 GTTCGGCAAGGGGAAGAGC 61.041 63.158 0.00 0.00 0.00 4.09
148 149 1.377333 GGTTCGGCAAGGGGAAGAG 60.377 63.158 0.00 0.00 0.00 2.85
149 150 1.497309 ATGGTTCGGCAAGGGGAAGA 61.497 55.000 0.00 0.00 0.00 2.87
150 151 0.254747 TATGGTTCGGCAAGGGGAAG 59.745 55.000 0.00 0.00 0.00 3.46
151 152 0.699399 TTATGGTTCGGCAAGGGGAA 59.301 50.000 0.00 0.00 0.00 3.97
152 153 0.254747 CTTATGGTTCGGCAAGGGGA 59.745 55.000 0.00 0.00 0.00 4.81
153 154 0.254747 TCTTATGGTTCGGCAAGGGG 59.745 55.000 0.00 0.00 0.00 4.79
154 155 1.668419 CTCTTATGGTTCGGCAAGGG 58.332 55.000 0.00 0.00 0.00 3.95
155 156 1.668419 CCTCTTATGGTTCGGCAAGG 58.332 55.000 0.00 0.00 0.00 3.61
156 157 1.017387 GCCTCTTATGGTTCGGCAAG 58.983 55.000 0.00 0.00 40.41 4.01
157 158 0.393808 GGCCTCTTATGGTTCGGCAA 60.394 55.000 0.00 0.00 42.43 4.52
158 159 1.223487 GGCCTCTTATGGTTCGGCA 59.777 57.895 0.00 0.00 42.43 5.69
159 160 1.887707 CGGCCTCTTATGGTTCGGC 60.888 63.158 0.00 0.00 39.98 5.54
160 161 0.393077 ATCGGCCTCTTATGGTTCGG 59.607 55.000 0.00 0.00 0.00 4.30
161 162 1.502231 CATCGGCCTCTTATGGTTCG 58.498 55.000 0.00 0.00 0.00 3.95
162 163 1.884235 CCATCGGCCTCTTATGGTTC 58.116 55.000 0.00 0.00 36.26 3.62
163 164 0.179018 GCCATCGGCCTCTTATGGTT 60.179 55.000 18.80 0.00 44.06 3.67
164 165 1.451936 GCCATCGGCCTCTTATGGT 59.548 57.895 18.80 0.00 44.06 3.55
165 166 4.386413 GCCATCGGCCTCTTATGG 57.614 61.111 15.34 15.34 44.06 2.74
175 176 1.983224 CCACCTATAGGGCCATCGG 59.017 63.158 22.91 9.05 40.27 4.18
176 177 1.296715 GCCACCTATAGGGCCATCG 59.703 63.158 22.91 4.50 44.53 3.84
182 183 1.342672 AACCACGGCCACCTATAGGG 61.343 60.000 22.91 11.41 40.27 3.53
183 184 0.544697 AAACCACGGCCACCTATAGG 59.455 55.000 17.73 17.73 42.17 2.57
184 185 1.474498 GGAAACCACGGCCACCTATAG 60.474 57.143 2.24 0.00 0.00 1.31
185 186 0.542805 GGAAACCACGGCCACCTATA 59.457 55.000 2.24 0.00 0.00 1.31
186 187 1.301954 GGAAACCACGGCCACCTAT 59.698 57.895 2.24 0.00 0.00 2.57
187 188 2.751688 GGAAACCACGGCCACCTA 59.248 61.111 2.24 0.00 0.00 3.08
199 200 4.396166 AGATTGATCATTGTCGTGGGAAAC 59.604 41.667 0.00 0.00 0.00 2.78
200 201 4.588899 AGATTGATCATTGTCGTGGGAAA 58.411 39.130 0.00 0.00 0.00 3.13
201 202 4.191544 GAGATTGATCATTGTCGTGGGAA 58.808 43.478 0.00 0.00 0.00 3.97
202 203 3.197549 TGAGATTGATCATTGTCGTGGGA 59.802 43.478 0.00 0.00 0.00 4.37
203 204 3.534554 TGAGATTGATCATTGTCGTGGG 58.465 45.455 0.00 0.00 0.00 4.61
204 205 5.055144 AGATGAGATTGATCATTGTCGTGG 58.945 41.667 12.65 0.00 40.02 4.94
205 206 5.177142 GGAGATGAGATTGATCATTGTCGTG 59.823 44.000 12.65 0.00 40.02 4.35
206 207 5.070180 AGGAGATGAGATTGATCATTGTCGT 59.930 40.000 8.70 8.70 40.02 4.34
207 208 5.539979 AGGAGATGAGATTGATCATTGTCG 58.460 41.667 0.00 0.00 40.02 4.35
208 209 8.937884 CATAAGGAGATGAGATTGATCATTGTC 58.062 37.037 0.00 1.70 40.02 3.18
209 210 7.883833 CCATAAGGAGATGAGATTGATCATTGT 59.116 37.037 0.00 0.00 37.25 2.71
210 211 7.883833 ACCATAAGGAGATGAGATTGATCATTG 59.116 37.037 0.00 0.00 37.98 2.82
211 212 7.986704 ACCATAAGGAGATGAGATTGATCATT 58.013 34.615 0.00 0.00 37.98 2.57
212 213 7.571071 ACCATAAGGAGATGAGATTGATCAT 57.429 36.000 0.00 0.00 39.46 2.45
213 214 7.952368 TCTACCATAAGGAGATGAGATTGATCA 59.048 37.037 0.00 0.00 38.69 2.92
214 215 8.359875 TCTACCATAAGGAGATGAGATTGATC 57.640 38.462 0.00 0.00 38.69 2.92
215 216 8.914213 ATCTACCATAAGGAGATGAGATTGAT 57.086 34.615 0.00 0.00 38.69 2.57
216 217 7.952368 TGATCTACCATAAGGAGATGAGATTGA 59.048 37.037 0.00 0.00 38.69 2.57
217 218 8.034215 GTGATCTACCATAAGGAGATGAGATTG 58.966 40.741 0.00 0.00 38.69 2.67
218 219 7.955185 AGTGATCTACCATAAGGAGATGAGATT 59.045 37.037 0.00 0.00 38.69 2.40
219 220 7.477864 AGTGATCTACCATAAGGAGATGAGAT 58.522 38.462 0.00 0.00 38.69 2.75
220 221 6.857848 AGTGATCTACCATAAGGAGATGAGA 58.142 40.000 0.00 0.00 38.69 3.27
221 222 6.718912 TGAGTGATCTACCATAAGGAGATGAG 59.281 42.308 0.00 0.00 38.69 2.90
222 223 6.614657 TGAGTGATCTACCATAAGGAGATGA 58.385 40.000 0.00 0.00 38.69 2.92
223 224 6.907853 TGAGTGATCTACCATAAGGAGATG 57.092 41.667 0.00 0.00 38.69 2.90
224 225 7.512058 ACAATGAGTGATCTACCATAAGGAGAT 59.488 37.037 0.00 0.00 38.69 2.75
225 226 6.841229 ACAATGAGTGATCTACCATAAGGAGA 59.159 38.462 0.00 0.00 38.69 3.71
226 227 7.060383 ACAATGAGTGATCTACCATAAGGAG 57.940 40.000 0.00 0.00 38.69 3.69
242 243 7.485418 TGTTGTTTACGTATTCACAATGAGT 57.515 32.000 14.88 0.00 32.00 3.41
243 244 8.279800 TCTTGTTGTTTACGTATTCACAATGAG 58.720 33.333 14.88 14.58 32.00 2.90
244 245 8.065407 GTCTTGTTGTTTACGTATTCACAATGA 58.935 33.333 14.88 11.78 32.00 2.57
245 246 7.322699 GGTCTTGTTGTTTACGTATTCACAATG 59.677 37.037 14.88 10.38 32.00 2.82
246 247 7.012515 TGGTCTTGTTGTTTACGTATTCACAAT 59.987 33.333 14.88 0.00 32.00 2.71
247 248 6.315642 TGGTCTTGTTGTTTACGTATTCACAA 59.684 34.615 10.05 10.05 0.00 3.33
248 249 5.816258 TGGTCTTGTTGTTTACGTATTCACA 59.184 36.000 0.00 0.00 0.00 3.58
249 250 6.131389 GTGGTCTTGTTGTTTACGTATTCAC 58.869 40.000 0.00 0.00 0.00 3.18
250 251 5.236911 GGTGGTCTTGTTGTTTACGTATTCA 59.763 40.000 0.00 0.00 0.00 2.57
251 252 5.236911 TGGTGGTCTTGTTGTTTACGTATTC 59.763 40.000 0.00 0.00 0.00 1.75
252 253 5.124645 TGGTGGTCTTGTTGTTTACGTATT 58.875 37.500 0.00 0.00 0.00 1.89
253 254 4.706035 TGGTGGTCTTGTTGTTTACGTAT 58.294 39.130 0.00 0.00 0.00 3.06
254 255 4.134379 TGGTGGTCTTGTTGTTTACGTA 57.866 40.909 0.00 0.00 0.00 3.57
255 256 2.988570 TGGTGGTCTTGTTGTTTACGT 58.011 42.857 0.00 0.00 0.00 3.57
256 257 4.561735 AATGGTGGTCTTGTTGTTTACG 57.438 40.909 0.00 0.00 0.00 3.18
257 258 5.458015 GCTAATGGTGGTCTTGTTGTTTAC 58.542 41.667 0.00 0.00 0.00 2.01
258 259 4.521256 GGCTAATGGTGGTCTTGTTGTTTA 59.479 41.667 0.00 0.00 0.00 2.01
259 260 3.320826 GGCTAATGGTGGTCTTGTTGTTT 59.679 43.478 0.00 0.00 0.00 2.83
260 261 2.890945 GGCTAATGGTGGTCTTGTTGTT 59.109 45.455 0.00 0.00 0.00 2.83
261 262 2.158534 TGGCTAATGGTGGTCTTGTTGT 60.159 45.455 0.00 0.00 0.00 3.32
262 263 2.513753 TGGCTAATGGTGGTCTTGTTG 58.486 47.619 0.00 0.00 0.00 3.33
263 264 2.969821 TGGCTAATGGTGGTCTTGTT 57.030 45.000 0.00 0.00 0.00 2.83
264 265 2.726821 CATGGCTAATGGTGGTCTTGT 58.273 47.619 0.00 0.00 32.10 3.16
274 275 2.079020 CTTGGCGGCCATGGCTAATG 62.079 60.000 34.70 22.31 41.60 1.90
275 276 1.829533 CTTGGCGGCCATGGCTAAT 60.830 57.895 34.70 0.00 41.60 1.73
276 277 2.440065 CTTGGCGGCCATGGCTAA 60.440 61.111 34.70 22.09 41.60 3.09
277 278 2.491770 TTTCTTGGCGGCCATGGCTA 62.492 55.000 34.70 16.78 41.60 3.93
278 279 3.884704 TTTCTTGGCGGCCATGGCT 62.885 57.895 34.70 0.00 41.60 4.75
279 280 2.447586 TTTTTCTTGGCGGCCATGGC 62.448 55.000 29.47 29.47 41.06 4.40
280 281 1.670590 TTTTTCTTGGCGGCCATGG 59.329 52.632 28.28 21.15 31.53 3.66
296 297 0.454196 AGTTCGTGTTGGCGCTTTTT 59.546 45.000 7.64 0.00 0.00 1.94
297 298 0.248458 CAGTTCGTGTTGGCGCTTTT 60.248 50.000 7.64 0.00 0.00 2.27
298 299 1.092921 TCAGTTCGTGTTGGCGCTTT 61.093 50.000 7.64 0.00 0.00 3.51
299 300 0.884704 ATCAGTTCGTGTTGGCGCTT 60.885 50.000 7.64 0.00 0.00 4.68
300 301 0.037697 TATCAGTTCGTGTTGGCGCT 60.038 50.000 7.64 0.00 0.00 5.92
301 302 0.094730 GTATCAGTTCGTGTTGGCGC 59.905 55.000 0.00 0.00 0.00 6.53
302 303 1.424403 TGTATCAGTTCGTGTTGGCG 58.576 50.000 0.00 0.00 0.00 5.69
303 304 2.412847 GCTTGTATCAGTTCGTGTTGGC 60.413 50.000 0.00 0.00 0.00 4.52
304 305 2.159841 CGCTTGTATCAGTTCGTGTTGG 60.160 50.000 0.00 0.00 0.00 3.77
305 306 2.721797 GCGCTTGTATCAGTTCGTGTTG 60.722 50.000 0.00 0.00 0.00 3.33
306 307 1.459592 GCGCTTGTATCAGTTCGTGTT 59.540 47.619 0.00 0.00 0.00 3.32
307 308 1.068474 GCGCTTGTATCAGTTCGTGT 58.932 50.000 0.00 0.00 0.00 4.49
308 309 0.023732 CGCGCTTGTATCAGTTCGTG 59.976 55.000 5.56 0.00 0.00 4.35
309 310 1.683790 GCGCGCTTGTATCAGTTCGT 61.684 55.000 26.67 0.00 0.00 3.85
310 311 1.013323 GCGCGCTTGTATCAGTTCG 60.013 57.895 26.67 0.00 0.00 3.95
311 312 1.348594 GGCGCGCTTGTATCAGTTC 59.651 57.895 32.29 5.31 0.00 3.01
312 313 2.452813 CGGCGCGCTTGTATCAGTT 61.453 57.895 32.29 0.00 0.00 3.16
313 314 2.885644 CGGCGCGCTTGTATCAGT 60.886 61.111 32.29 0.00 0.00 3.41
324 325 2.646553 GAATTAAACGGCGGCGCG 60.647 61.111 32.57 22.44 0.00 6.86
325 326 1.582680 CAGAATTAAACGGCGGCGC 60.583 57.895 32.57 26.17 0.00 6.53
326 327 1.582680 GCAGAATTAAACGGCGGCG 60.583 57.895 31.06 31.06 0.00 6.46
327 328 1.226575 GGCAGAATTAAACGGCGGC 60.227 57.895 13.24 0.00 0.00 6.53
328 329 1.061887 CGGCAGAATTAAACGGCGG 59.938 57.895 13.24 0.00 42.94 6.13
329 330 4.662859 CGGCAGAATTAAACGGCG 57.337 55.556 4.80 4.80 41.08 6.46
330 331 1.613270 CAACGGCAGAATTAAACGGC 58.387 50.000 0.00 0.00 0.00 5.68
331 332 1.613270 GCAACGGCAGAATTAAACGG 58.387 50.000 0.00 0.00 40.72 4.44
343 344 2.483288 CCCGTGTATTGCAACGGC 59.517 61.111 19.90 6.05 39.06 5.68
344 345 2.328856 TGCCCGTGTATTGCAACGG 61.329 57.895 18.66 18.66 39.63 4.44
345 346 1.154301 GTGCCCGTGTATTGCAACG 60.154 57.895 0.00 0.38 36.65 4.10
346 347 0.525761 ATGTGCCCGTGTATTGCAAC 59.474 50.000 0.00 0.00 36.65 4.17
347 348 0.525311 CATGTGCCCGTGTATTGCAA 59.475 50.000 0.00 0.00 36.65 4.08
348 349 0.607762 ACATGTGCCCGTGTATTGCA 60.608 50.000 0.00 0.00 39.05 4.08
349 350 0.179166 CACATGTGCCCGTGTATTGC 60.179 55.000 13.94 0.00 38.79 3.56
350 351 1.164411 ACACATGTGCCCGTGTATTG 58.836 50.000 25.68 0.00 44.32 1.90
351 352 1.904287 AACACATGTGCCCGTGTATT 58.096 45.000 25.68 6.99 45.37 1.89
352 353 2.027561 ACTAACACATGTGCCCGTGTAT 60.028 45.455 25.68 0.17 45.37 2.29
353 354 1.345089 ACTAACACATGTGCCCGTGTA 59.655 47.619 25.68 7.59 45.37 2.90
355 356 2.087501 TACTAACACATGTGCCCGTG 57.912 50.000 25.68 13.34 39.10 4.94
356 357 2.843401 TTACTAACACATGTGCCCGT 57.157 45.000 25.68 19.81 0.00 5.28
357 358 4.695217 ATTTTACTAACACATGTGCCCG 57.305 40.909 25.68 15.30 0.00 6.13
358 359 8.996024 ATTTTATTTTACTAACACATGTGCCC 57.004 30.769 25.68 0.00 0.00 5.36
374 375 8.019094 CGGTCCGACTTTTCACTATTTTATTTT 58.981 33.333 4.91 0.00 0.00 1.82
375 376 7.388500 TCGGTCCGACTTTTCACTATTTTATTT 59.612 33.333 10.71 0.00 0.00 1.40
376 377 6.875195 TCGGTCCGACTTTTCACTATTTTATT 59.125 34.615 10.71 0.00 0.00 1.40
377 378 6.400568 TCGGTCCGACTTTTCACTATTTTAT 58.599 36.000 10.71 0.00 0.00 1.40
378 379 5.782047 TCGGTCCGACTTTTCACTATTTTA 58.218 37.500 10.71 0.00 0.00 1.52
379 380 4.634199 TCGGTCCGACTTTTCACTATTTT 58.366 39.130 10.71 0.00 0.00 1.82
380 381 4.243270 CTCGGTCCGACTTTTCACTATTT 58.757 43.478 10.71 0.00 0.00 1.40
381 382 3.846360 CTCGGTCCGACTTTTCACTATT 58.154 45.455 10.71 0.00 0.00 1.73
382 383 2.416972 GCTCGGTCCGACTTTTCACTAT 60.417 50.000 10.71 0.00 0.00 2.12
383 384 1.068055 GCTCGGTCCGACTTTTCACTA 60.068 52.381 10.71 0.00 0.00 2.74
384 385 0.319641 GCTCGGTCCGACTTTTCACT 60.320 55.000 10.71 0.00 0.00 3.41
385 386 1.615107 CGCTCGGTCCGACTTTTCAC 61.615 60.000 10.71 0.00 0.00 3.18
386 387 1.372499 CGCTCGGTCCGACTTTTCA 60.372 57.895 10.71 0.00 0.00 2.69
387 388 1.372623 ACGCTCGGTCCGACTTTTC 60.373 57.895 10.71 0.00 0.00 2.29
388 389 1.663702 CACGCTCGGTCCGACTTTT 60.664 57.895 10.71 0.00 0.00 2.27
389 390 1.518056 TACACGCTCGGTCCGACTTT 61.518 55.000 10.71 0.00 0.00 2.66
390 391 1.968017 TACACGCTCGGTCCGACTT 60.968 57.895 10.71 0.00 0.00 3.01
391 392 2.359107 TACACGCTCGGTCCGACT 60.359 61.111 10.71 0.00 0.00 4.18
392 393 2.202401 GTACACGCTCGGTCCGAC 60.202 66.667 10.71 6.83 0.00 4.79
393 394 2.042259 ATGTACACGCTCGGTCCGA 61.042 57.895 14.54 14.54 0.00 4.55
394 395 1.872234 CATGTACACGCTCGGTCCG 60.872 63.158 4.39 4.39 0.00 4.79
395 396 2.165301 GCATGTACACGCTCGGTCC 61.165 63.158 6.68 0.00 0.00 4.46
396 397 0.806102 ATGCATGTACACGCTCGGTC 60.806 55.000 15.74 0.00 0.00 4.79
397 398 0.458260 TATGCATGTACACGCTCGGT 59.542 50.000 15.74 1.62 0.00 4.69
398 399 0.852777 GTATGCATGTACACGCTCGG 59.147 55.000 15.74 0.00 0.00 4.63
399 400 0.852777 GGTATGCATGTACACGCTCG 59.147 55.000 15.74 0.00 0.00 5.03
400 401 2.225068 AGGTATGCATGTACACGCTC 57.775 50.000 15.74 5.73 0.00 5.03
401 402 2.550978 GAAGGTATGCATGTACACGCT 58.449 47.619 15.74 3.45 0.00 5.07
402 403 1.257936 CGAAGGTATGCATGTACACGC 59.742 52.381 10.16 7.04 0.00 5.34
471 472 2.556287 GTGTTCGCCTTCGCCTTG 59.444 61.111 0.00 0.00 35.26 3.61
512 518 0.249447 TGCTCCACACACTTGTCGAG 60.249 55.000 0.00 0.00 42.27 4.04
794 836 3.176708 GCGTCTGTCTTTTACGATGCTA 58.823 45.455 0.00 0.00 38.97 3.49
797 839 1.266404 GCGCGTCTGTCTTTTACGATG 60.266 52.381 8.43 0.00 38.89 3.84
996 1044 2.682136 TCGGCCGACTCCATCCAA 60.682 61.111 27.28 0.00 0.00 3.53
1568 1628 1.458777 ACGGTGACCTCCTTGTCCA 60.459 57.895 0.00 0.00 34.25 4.02
1693 1768 4.052229 GGGCTGCTGCTGCTGTTG 62.052 66.667 26.79 8.62 39.81 3.33
1990 2065 1.657751 GGCGAATTGGACTGAAGGGC 61.658 60.000 0.00 0.00 0.00 5.19
2273 2357 9.813080 GCCAATATAACGAATCTAATCTTGAAC 57.187 33.333 0.00 0.00 0.00 3.18
2276 2360 9.764870 CATGCCAATATAACGAATCTAATCTTG 57.235 33.333 0.00 0.00 0.00 3.02
2320 2408 2.183046 GAGGACACCTCGAGCAGC 59.817 66.667 6.99 0.00 41.08 5.25
2620 2722 9.013229 AGATGAAGCTGACAAATGTTGTTATAA 57.987 29.630 0.00 0.00 45.52 0.98
2682 2789 6.535150 AGTTGTATGACGACAAATATCAGTGG 59.465 38.462 0.00 0.00 40.88 4.00
2694 2801 4.264614 CCGTTGTGATAGTTGTATGACGAC 59.735 45.833 0.00 0.00 35.08 4.34
2715 2824 1.033746 AAAGCACATCAGGATGCCCG 61.034 55.000 9.12 0.20 43.12 6.13
2718 2827 2.770699 GCTAAAGCACATCAGGATGC 57.229 50.000 9.12 0.00 42.39 3.91
2753 2862 0.594602 CGGACCTGTCGACTGTTGTA 59.405 55.000 17.92 0.00 0.00 2.41
2755 2864 1.658114 TCGGACCTGTCGACTGTTG 59.342 57.895 17.92 7.11 0.00 3.33
2756 2865 4.169271 TCGGACCTGTCGACTGTT 57.831 55.556 17.92 4.35 0.00 3.16
2761 2870 0.384309 GCATATGTCGGACCTGTCGA 59.616 55.000 5.55 0.00 0.00 4.20
2762 2871 0.597637 GGCATATGTCGGACCTGTCG 60.598 60.000 5.55 0.00 0.00 4.35
2800 2910 0.902531 TGTCTAGGTTACTGCAGCCC 59.097 55.000 15.27 11.64 0.00 5.19
2810 2920 2.835764 TGAGCGGGTATTTGTCTAGGTT 59.164 45.455 0.00 0.00 0.00 3.50
2821 2931 3.039011 ACCAATAAGACTGAGCGGGTAT 58.961 45.455 0.00 0.00 0.00 2.73
2845 2955 2.600867 GACATCTGAAGCAAGCTACGTC 59.399 50.000 0.00 0.00 0.00 4.34
2964 3108 9.282247 GAAGCACATCTGAAACTATGTTTTATG 57.718 33.333 0.00 5.32 34.12 1.90
2990 3139 2.479566 AGCAGACTTATGTGGTGGTG 57.520 50.000 0.00 0.00 0.00 4.17
2991 3140 4.844349 AATAGCAGACTTATGTGGTGGT 57.156 40.909 0.00 0.00 31.33 4.16
2992 3141 6.150976 TGAAAAATAGCAGACTTATGTGGTGG 59.849 38.462 0.00 0.00 31.33 4.61
3030 3179 5.104735 AGGAAGATGATTCAGGGTGTCTAAC 60.105 44.000 0.00 0.00 0.00 2.34
3035 3184 2.356535 GCAGGAAGATGATTCAGGGTGT 60.357 50.000 0.00 0.00 0.00 4.16
3121 3275 5.688621 CACAATGAACAGAAACATTCACCTG 59.311 40.000 0.00 0.00 37.64 4.00
3122 3276 5.737063 GCACAATGAACAGAAACATTCACCT 60.737 40.000 0.00 0.00 37.64 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.