Multiple sequence alignment - TraesCS5B01G425200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G425200 chr5B 100.000 4037 0 0 1 4037 601331221 601327185 0.000000e+00 7456.0
1 TraesCS5B01G425200 chr5B 96.648 179 3 3 3333 3509 556958971 556958794 1.100000e-75 294.0
2 TraesCS5B01G425200 chr5B 86.294 197 24 2 3337 3533 464355341 464355148 1.140000e-50 211.0
3 TraesCS5B01G425200 chr5B 90.062 161 5 1 3550 3699 538681230 538681070 8.850000e-47 198.0
4 TraesCS5B01G425200 chr5B 96.667 60 2 0 3700 3759 601327582 601327523 2.570000e-17 100.0
5 TraesCS5B01G425200 chr5A 89.814 2425 107 52 1 2358 609204980 609202629 0.000000e+00 2981.0
6 TraesCS5B01G425200 chr5A 89.397 962 49 21 2343 3272 609202616 609201676 0.000000e+00 1162.0
7 TraesCS5B01G425200 chr5A 87.793 213 11 5 3498 3699 609196583 609196375 6.750000e-58 235.0
8 TraesCS5B01G425200 chr5A 92.647 68 3 2 3208 3275 609196643 609196578 3.320000e-16 97.1
9 TraesCS5B01G425200 chr5D 87.913 2515 149 58 903 3340 488347968 488345532 0.000000e+00 2817.0
10 TraesCS5B01G425200 chr5D 90.014 721 31 15 3 710 488348767 488348075 0.000000e+00 894.0
11 TraesCS5B01G425200 chr5D 87.290 417 27 11 1311 1710 537938617 537939024 1.710000e-123 453.0
12 TraesCS5B01G425200 chr5D 88.000 350 30 7 3700 4037 488345385 488345036 1.750000e-108 403.0
13 TraesCS5B01G425200 chr5D 88.208 212 9 3 3499 3699 488345532 488345326 5.210000e-59 239.0
14 TraesCS5B01G425200 chr5D 89.697 165 6 1 3550 3703 329158944 329159108 2.460000e-47 200.0
15 TraesCS5B01G425200 chr5D 89.697 165 6 1 3550 3703 503300936 503300772 2.460000e-47 200.0
16 TraesCS5B01G425200 chr5D 89.091 165 7 1 3550 3703 6266948 6267112 1.140000e-45 195.0
17 TraesCS5B01G425200 chr5D 89.091 165 7 1 3550 3703 12938123 12937959 1.140000e-45 195.0
18 TraesCS5B01G425200 chr5D 93.846 65 2 2 3208 3272 488345596 488345534 3.320000e-16 97.1
19 TraesCS5B01G425200 chr2B 81.534 1408 173 42 1354 2717 445495300 445493936 0.000000e+00 1079.0
20 TraesCS5B01G425200 chr2B 93.333 255 9 4 999 1253 346735614 346735860 1.770000e-98 370.0
21 TraesCS5B01G425200 chr2B 97.191 178 4 1 3332 3509 299552650 299552474 2.360000e-77 300.0
22 TraesCS5B01G425200 chr2B 97.647 170 3 1 3332 3501 800030488 800030656 1.420000e-74 291.0
23 TraesCS5B01G425200 chr2B 94.737 114 6 0 3872 3985 234527592 234527479 1.150000e-40 178.0
24 TraesCS5B01G425200 chr2B 94.737 114 6 0 3872 3985 449186646 449186533 1.150000e-40 178.0
25 TraesCS5B01G425200 chr1D 87.260 416 29 12 1311 1710 239784700 239785107 1.710000e-123 453.0
26 TraesCS5B01G425200 chr1D 94.942 257 6 2 997 1253 239784456 239784705 2.920000e-106 396.0
27 TraesCS5B01G425200 chr1D 89.697 165 6 1 3550 3703 254444068 254443904 2.460000e-47 200.0
28 TraesCS5B01G425200 chr7B 88.281 384 35 8 2343 2717 723893298 723892916 6.150000e-123 451.0
29 TraesCS5B01G425200 chr7B 93.385 257 10 3 997 1253 625272090 625272339 1.370000e-99 374.0
30 TraesCS5B01G425200 chr7B 95.890 73 3 0 3631 3703 731339636 731339564 7.090000e-23 119.0
31 TraesCS5B01G425200 chr4D 87.050 417 28 12 1311 1710 153051487 153051894 7.960000e-122 448.0
32 TraesCS5B01G425200 chr4D 92.996 257 10 3 997 1253 153051244 153051492 6.370000e-98 368.0
33 TraesCS5B01G425200 chr4D 90.062 161 5 1 3550 3699 19877489 19877329 8.850000e-47 198.0
34 TraesCS5B01G425200 chr2D 87.050 417 28 11 1311 1710 42603855 42604262 7.960000e-122 448.0
35 TraesCS5B01G425200 chr2D 86.811 417 28 12 1311 1710 200393690 200394096 1.330000e-119 440.0
36 TraesCS5B01G425200 chr2D 93.385 257 10 3 997 1253 200393446 200393695 1.370000e-99 374.0
37 TraesCS5B01G425200 chr2D 89.051 137 4 3 3578 3703 59896638 59896502 4.180000e-35 159.0
38 TraesCS5B01G425200 chrUn 88.021 384 36 8 2343 2717 41813859 41813477 2.860000e-121 446.0
39 TraesCS5B01G425200 chrUn 94.737 114 6 0 3872 3985 182429163 182429276 1.150000e-40 178.0
40 TraesCS5B01G425200 chrUn 94.737 114 6 0 3872 3985 414425666 414425553 1.150000e-40 178.0
41 TraesCS5B01G425200 chrUn 95.455 88 4 0 3785 3872 182429105 182429192 1.510000e-29 141.0
42 TraesCS5B01G425200 chrUn 95.455 88 4 0 3785 3872 231556683 231556596 1.510000e-29 141.0
43 TraesCS5B01G425200 chrUn 95.455 88 4 0 3785 3872 273331444 273331531 1.510000e-29 141.0
44 TraesCS5B01G425200 chrUn 95.455 88 4 0 3785 3872 312036920 312036833 1.510000e-29 141.0
45 TraesCS5B01G425200 chrUn 95.455 88 4 0 3785 3872 414425724 414425637 1.510000e-29 141.0
46 TraesCS5B01G425200 chr4B 87.500 384 38 8 2343 2717 600368414 600368032 6.200000e-118 435.0
47 TraesCS5B01G425200 chr4B 92.746 193 10 3 3327 3516 631607624 631607433 3.970000e-70 276.0
48 TraesCS5B01G425200 chr4B 95.455 88 4 0 3785 3872 209119954 209120041 1.510000e-29 141.0
49 TraesCS5B01G425200 chr7A 88.184 347 24 9 1311 1642 151359513 151359857 8.130000e-107 398.0
50 TraesCS5B01G425200 chr7A 88.372 344 23 10 1314 1642 578331839 578331498 8.130000e-107 398.0
51 TraesCS5B01G425200 chr7A 94.737 114 6 0 3872 3985 60217237 60217124 1.150000e-40 178.0
52 TraesCS5B01G425200 chr7A 97.222 72 2 0 3628 3699 167574317 167574246 5.480000e-24 122.0
53 TraesCS5B01G425200 chr3B 93.385 257 10 3 997 1253 62349472 62349721 1.370000e-99 374.0
54 TraesCS5B01G425200 chr3B 97.647 170 4 0 3332 3501 178399256 178399087 3.950000e-75 292.0
55 TraesCS5B01G425200 chr3B 90.683 161 4 1 3550 3699 101911149 101911309 1.900000e-48 204.0
56 TraesCS5B01G425200 chr3A 92.996 257 11 3 997 1253 611009377 611009626 6.370000e-98 368.0
57 TraesCS5B01G425200 chr3A 96.552 174 6 0 3330 3503 20900237 20900410 5.110000e-74 289.0
58 TraesCS5B01G425200 chr3A 89.441 161 6 1 3550 3699 69384683 69384843 4.120000e-45 193.0
59 TraesCS5B01G425200 chr3A 94.737 114 6 0 3872 3985 593314793 593314906 1.150000e-40 178.0
60 TraesCS5B01G425200 chr6B 96.552 174 6 0 3337 3510 452184200 452184373 5.110000e-74 289.0
61 TraesCS5B01G425200 chr6B 96.089 179 4 3 3337 3513 564658068 564658245 5.110000e-74 289.0
62 TraesCS5B01G425200 chr6B 94.690 113 6 0 3872 3984 311359588 311359700 4.150000e-40 176.0
63 TraesCS5B01G425200 chr1A 96.591 176 3 3 3330 3504 526575515 526575688 5.110000e-74 289.0
64 TraesCS5B01G425200 chr1A 94.318 88 5 0 3700 3787 154075536 154075449 7.040000e-28 135.0
65 TraesCS5B01G425200 chr6D 94.737 114 6 0 3872 3985 458914779 458914666 1.150000e-40 178.0
66 TraesCS5B01G425200 chr6D 95.455 88 4 0 3785 3872 458914837 458914750 1.510000e-29 141.0
67 TraesCS5B01G425200 chr4A 94.737 114 6 0 3872 3985 67539741 67539628 1.150000e-40 178.0
68 TraesCS5B01G425200 chr7D 95.455 88 4 0 3785 3872 6945583 6945670 1.510000e-29 141.0
69 TraesCS5B01G425200 chr6A 97.500 80 2 0 3550 3629 592504161 592504082 1.960000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G425200 chr5B 601327185 601331221 4036 True 3778.00 7456 98.3335 1 4037 2 chr5B.!!$R4 4036
1 TraesCS5B01G425200 chr5A 609201676 609204980 3304 True 2071.50 2981 89.6055 1 3272 2 chr5A.!!$R2 3271
2 TraesCS5B01G425200 chr5D 488345036 488348767 3731 True 890.02 2817 89.5962 3 4037 5 chr5D.!!$R3 4034
3 TraesCS5B01G425200 chr2B 445493936 445495300 1364 True 1079.00 1079 81.5340 1354 2717 1 chr2B.!!$R3 1363
4 TraesCS5B01G425200 chr1D 239784456 239785107 651 False 424.50 453 91.1010 997 1710 2 chr1D.!!$F1 713
5 TraesCS5B01G425200 chr4D 153051244 153051894 650 False 408.00 448 90.0230 997 1710 2 chr4D.!!$F1 713
6 TraesCS5B01G425200 chr2D 200393446 200394096 650 False 407.00 440 90.0980 997 1710 2 chr2D.!!$F2 713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
660 690 1.068352 AGGCCCAGTTCCTTTGGAGT 61.068 55.0 0.0 0.0 37.96 3.85 F
1800 1910 0.386113 GCTAGGAGGTTAGTGCGAGG 59.614 60.0 0.0 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2034 2174 0.109272 TCGATGGCACGAAGTCAGTC 60.109 55.0 9.19 0.0 41.61 3.51 R
3540 3744 0.183492 AGCCTTGGCAGTTGTTCTGA 59.817 50.0 14.54 0.0 46.27 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.336372 GCAGCAAATACCAACATCCTACAAA 60.336 40.000 0.00 0.00 0.00 2.83
73 75 1.228737 CACCCCAAACCGTCCCATT 60.229 57.895 0.00 0.00 0.00 3.16
84 86 1.522668 CGTCCCATTGTTCTGCAGAA 58.477 50.000 25.16 25.16 0.00 3.02
122 128 1.234615 AAATCGGGTGTGCAGGTTCG 61.235 55.000 0.00 0.00 0.00 3.95
125 131 2.110213 GGGTGTGCAGGTTCGTCA 59.890 61.111 0.00 0.00 0.00 4.35
142 148 6.091169 GGTTCGTCAACAATATAGAAACGGAA 59.909 38.462 0.00 0.00 33.70 4.30
158 164 7.431249 AGAAACGGAATGCGTATCTATTCTAA 58.569 34.615 8.92 0.00 34.52 2.10
163 169 7.709613 ACGGAATGCGTATCTATTCTAAGTTTT 59.290 33.333 0.00 0.00 34.52 2.43
183 189 2.356673 GCAAGCAAGCAACTGGCC 60.357 61.111 0.00 0.00 46.50 5.36
199 205 5.700402 ACTGGCCAAATACTCTAGTTCAT 57.300 39.130 7.01 0.00 0.00 2.57
200 206 6.067217 ACTGGCCAAATACTCTAGTTCATT 57.933 37.500 7.01 0.00 0.00 2.57
201 207 6.116126 ACTGGCCAAATACTCTAGTTCATTC 58.884 40.000 7.01 0.00 0.00 2.67
202 208 6.061022 TGGCCAAATACTCTAGTTCATTCA 57.939 37.500 0.61 0.00 0.00 2.57
257 263 3.112709 GGAGACCTTGTCGCGTGC 61.113 66.667 5.77 0.57 37.67 5.34
402 417 4.116585 TCGGCCTCCTCGAGCTCT 62.117 66.667 12.85 0.00 32.51 4.09
573 588 4.760047 GCCGTGGACATGGACGCT 62.760 66.667 14.55 0.00 39.90 5.07
574 589 2.509336 CCGTGGACATGGACGCTC 60.509 66.667 4.52 0.00 39.90 5.03
575 590 2.880879 CGTGGACATGGACGCTCG 60.881 66.667 0.00 0.00 0.00 5.03
576 591 2.509336 GTGGACATGGACGCTCGG 60.509 66.667 0.00 0.00 0.00 4.63
577 592 2.678580 TGGACATGGACGCTCGGA 60.679 61.111 0.00 0.00 0.00 4.55
578 593 2.058001 TGGACATGGACGCTCGGAT 61.058 57.895 0.00 0.00 0.00 4.18
579 594 1.592669 GGACATGGACGCTCGGATG 60.593 63.158 0.00 0.00 0.00 3.51
638 668 3.594603 TTTAGGGCTTTCTCTGTCGAG 57.405 47.619 0.00 0.00 38.67 4.04
657 687 1.820010 GCAAGGCCCAGTTCCTTTGG 61.820 60.000 0.00 0.00 41.73 3.28
660 690 1.068352 AGGCCCAGTTCCTTTGGAGT 61.068 55.000 0.00 0.00 37.96 3.85
747 801 4.503741 AGTTGTTTCATTCCATTCCGTG 57.496 40.909 0.00 0.00 0.00 4.94
787 841 1.308069 CCACTTTCAGGCCCATCACG 61.308 60.000 0.00 0.00 0.00 4.35
877 940 2.562912 GCACAAGGCATCACCACG 59.437 61.111 0.00 0.00 43.14 4.94
880 943 1.303561 ACAAGGCATCACCACGCAT 60.304 52.632 0.00 0.00 43.14 4.73
886 949 1.495878 GCATCACCACGCATAGAGAG 58.504 55.000 0.00 0.00 0.00 3.20
888 951 2.861750 GCATCACCACGCATAGAGAGAG 60.862 54.545 0.00 0.00 0.00 3.20
890 953 2.293170 TCACCACGCATAGAGAGAGAG 58.707 52.381 0.00 0.00 0.00 3.20
892 955 2.290367 CACCACGCATAGAGAGAGAGAG 59.710 54.545 0.00 0.00 0.00 3.20
894 957 3.210227 CCACGCATAGAGAGAGAGAGAA 58.790 50.000 0.00 0.00 0.00 2.87
895 958 3.629855 CCACGCATAGAGAGAGAGAGAAA 59.370 47.826 0.00 0.00 0.00 2.52
896 959 4.097135 CCACGCATAGAGAGAGAGAGAAAA 59.903 45.833 0.00 0.00 0.00 2.29
897 960 5.393569 CCACGCATAGAGAGAGAGAGAAAAA 60.394 44.000 0.00 0.00 0.00 1.94
960 1028 4.771356 TCGAACTCGAAGCGCCCG 62.771 66.667 2.29 8.90 46.30 6.13
1369 1454 5.245075 TGTGGTAAAATTTCTGGTGATTCCC 59.755 40.000 0.00 0.00 34.77 3.97
1396 1487 0.736053 TGGTTTCGTTGTGTGAAGCC 59.264 50.000 2.15 2.15 44.29 4.35
1460 1555 3.013921 TCGAGTTGGCAAGTTCTGTTTT 58.986 40.909 9.30 0.00 0.00 2.43
1461 1556 3.108144 CGAGTTGGCAAGTTCTGTTTTG 58.892 45.455 9.30 0.00 0.00 2.44
1462 1557 3.181501 CGAGTTGGCAAGTTCTGTTTTGA 60.182 43.478 9.30 0.00 0.00 2.69
1463 1558 4.354587 GAGTTGGCAAGTTCTGTTTTGAG 58.645 43.478 9.30 0.00 0.00 3.02
1466 1561 4.370364 TGGCAAGTTCTGTTTTGAGTTC 57.630 40.909 0.00 0.00 0.00 3.01
1467 1562 3.181501 TGGCAAGTTCTGTTTTGAGTTCG 60.182 43.478 0.00 0.00 0.00 3.95
1474 1569 6.674066 AGTTCTGTTTTGAGTTCGTTTTGAA 58.326 32.000 0.00 0.00 0.00 2.69
1477 1574 7.504922 TCTGTTTTGAGTTCGTTTTGAATTG 57.495 32.000 0.00 0.00 39.21 2.32
1481 1578 8.024285 TGTTTTGAGTTCGTTTTGAATTGTACT 58.976 29.630 0.00 0.00 39.21 2.73
1507 1607 0.963856 AGCTGTGCATCCATGTGGTG 60.964 55.000 0.00 0.00 36.34 4.17
1519 1619 2.164219 CCATGTGGTGAGGTAATTGTGC 59.836 50.000 0.00 0.00 0.00 4.57
1520 1620 1.904287 TGTGGTGAGGTAATTGTGCC 58.096 50.000 0.00 0.00 0.00 5.01
1527 1627 3.701040 GTGAGGTAATTGTGCCAATCCAT 59.299 43.478 1.57 0.00 30.37 3.41
1633 1736 3.385111 GGGATCGGACTGTCTAATTCTGT 59.615 47.826 7.85 0.00 0.00 3.41
1667 1773 0.454957 GCTATGCTTGTTGCGGTGTG 60.455 55.000 0.00 0.00 46.63 3.82
1681 1787 1.226746 GGTGTGTGCTTCAGGTGTAC 58.773 55.000 0.00 0.00 0.00 2.90
1742 1852 8.668510 ACTGCTTTAATTGTATACATCTCTGG 57.331 34.615 6.36 0.00 0.00 3.86
1777 1887 0.681243 GTGATCCCCTGGGCTTGTTC 60.681 60.000 7.39 0.00 34.68 3.18
1800 1910 0.386113 GCTAGGAGGTTAGTGCGAGG 59.614 60.000 0.00 0.00 0.00 4.63
1820 1930 6.546395 CGAGGTGGTCTCAATTAATTTTCAG 58.454 40.000 0.00 0.00 42.55 3.02
1887 2009 8.614469 ATTATCTATTTCAGGCTTTCAGCTAC 57.386 34.615 0.00 0.00 41.99 3.58
2034 2174 8.783093 TGTTATCTTGTTACAGAAACCTTGATG 58.217 33.333 0.00 0.00 37.27 3.07
2035 2175 8.999431 GTTATCTTGTTACAGAAACCTTGATGA 58.001 33.333 0.00 0.00 37.27 2.92
2038 2178 6.483307 TCTTGTTACAGAAACCTTGATGACTG 59.517 38.462 0.00 0.00 37.27 3.51
2043 2183 5.059833 ACAGAAACCTTGATGACTGACTTC 58.940 41.667 0.00 0.00 0.00 3.01
2052 2192 0.388520 TGACTGACTTCGTGCCATCG 60.389 55.000 0.00 0.00 0.00 3.84
2065 2205 4.023450 TCGTGCCATCGATTACCTAGTTAG 60.023 45.833 0.00 0.00 34.85 2.34
2067 2207 5.221130 GTGCCATCGATTACCTAGTTAGTC 58.779 45.833 0.00 0.00 0.00 2.59
2069 2209 4.474113 CCATCGATTACCTAGTTAGTCGC 58.526 47.826 7.25 0.00 0.00 5.19
2121 2261 5.869888 GGTGATCTTGTCTGATTACTTCGTT 59.130 40.000 0.00 0.00 34.60 3.85
2126 2266 9.141400 GATCTTGTCTGATTACTTCGTTTTACT 57.859 33.333 0.00 0.00 0.00 2.24
2139 2279 3.112580 CGTTTTACTTGGTTGCAGGTTG 58.887 45.455 0.00 0.00 0.00 3.77
2171 2311 1.594862 GAGGCATCCAAGACGATTTCG 59.405 52.381 0.00 0.00 46.33 3.46
2175 2315 2.222819 GCATCCAAGACGATTTCGACAC 60.223 50.000 7.01 0.00 43.02 3.67
2249 2389 3.191791 GGAGCCATACGAGGAATCTACTC 59.808 52.174 0.00 0.00 0.00 2.59
2300 2440 8.721478 GTGAAAGTTCTGTTTGAGCAGATATTA 58.279 33.333 0.00 0.00 43.99 0.98
2382 2550 6.932960 TCAACCCTTTAGTTTGCTACTCTTAC 59.067 38.462 0.00 0.00 38.33 2.34
2404 2572 6.254281 ACATGCCTGTTGAGTAAATGTTAC 57.746 37.500 0.00 0.00 28.70 2.50
2409 2577 5.122396 GCCTGTTGAGTAAATGTTACCTGAG 59.878 44.000 0.00 0.00 0.00 3.35
2551 2720 2.270434 ATGCCCTCCCTTCTAAGTCA 57.730 50.000 0.00 0.00 0.00 3.41
2586 2755 7.009179 AGAAACTGAATGAAGATGGTGAGTA 57.991 36.000 0.00 0.00 0.00 2.59
2595 2766 4.590647 TGAAGATGGTGAGTATCCTGATCC 59.409 45.833 0.00 0.00 0.00 3.36
2601 2772 2.896685 GTGAGTATCCTGATCCCCAGAG 59.103 54.545 0.00 0.00 45.78 3.35
2617 2788 3.181461 CCCAGAGCACCGATTTATCTCTT 60.181 47.826 0.00 0.00 32.32 2.85
2651 2829 0.252479 ACTCTGAGCTTCCATGCCAG 59.748 55.000 4.19 0.00 34.70 4.85
2666 2844 1.601419 GCCAGGCATGCAACTCACAT 61.601 55.000 21.36 0.00 0.00 3.21
2667 2845 0.454600 CCAGGCATGCAACTCACATC 59.545 55.000 21.36 0.00 0.00 3.06
2671 2849 2.829720 AGGCATGCAACTCACATCATTT 59.170 40.909 21.36 0.00 0.00 2.32
2721 2902 1.135774 GGTTGCCTTACAAAGCGTAGC 60.136 52.381 0.00 0.00 44.79 3.58
2813 3006 6.490381 AGTTCTATAGTTGATCAGGTCGCATA 59.510 38.462 0.00 0.00 0.00 3.14
2815 3008 7.284919 TCTATAGTTGATCAGGTCGCATAAA 57.715 36.000 0.00 0.00 0.00 1.40
2820 3013 4.313277 TGATCAGGTCGCATAAAGAGAG 57.687 45.455 0.00 0.00 0.00 3.20
2833 3026 5.049818 GCATAAAGAGAGAATGATTGGGACG 60.050 44.000 0.00 0.00 0.00 4.79
2841 3034 5.471456 AGAGAATGATTGGGACGAAATATGC 59.529 40.000 0.00 0.00 0.00 3.14
2848 3041 5.413309 TTGGGACGAAATATGCCAAAAAT 57.587 34.783 0.00 0.00 43.73 1.82
2855 3048 9.522804 GGACGAAATATGCCAAAAATACAATAA 57.477 29.630 0.00 0.00 0.00 1.40
2901 3094 4.619160 CGGTGTCACTTGATTCTGATCTCA 60.619 45.833 2.35 0.00 33.28 3.27
2918 3111 2.439507 TCTCAGGTCACTGCCTCTTTTT 59.560 45.455 0.00 0.00 44.54 1.94
3039 3232 0.752009 TAGGGCTAGACTGGTGAGCG 60.752 60.000 0.00 0.00 37.07 5.03
3042 3235 0.246635 GGCTAGACTGGTGAGCGAAA 59.753 55.000 0.00 0.00 37.07 3.46
3055 3250 4.038162 GGTGAGCGAAACCTATACAGAGAT 59.962 45.833 0.00 0.00 34.66 2.75
3145 3341 2.983803 GAGTTCGAGAGTTCAGAGTTGC 59.016 50.000 0.00 0.00 0.00 4.17
3306 3510 9.064706 CAACATGAAATTCCAGCTTATCTCTAT 57.935 33.333 0.00 0.00 0.00 1.98
3313 3517 4.953667 TCCAGCTTATCTCTATGCTGTTG 58.046 43.478 15.21 5.60 46.80 3.33
3342 3546 1.954927 GCTACCTGCAATGTACTCCC 58.045 55.000 0.00 0.00 42.31 4.30
3343 3547 1.486726 GCTACCTGCAATGTACTCCCT 59.513 52.381 0.00 0.00 42.31 4.20
3344 3548 2.483889 GCTACCTGCAATGTACTCCCTC 60.484 54.545 0.00 0.00 42.31 4.30
3345 3549 0.912486 ACCTGCAATGTACTCCCTCC 59.088 55.000 0.00 0.00 0.00 4.30
3346 3550 0.179073 CCTGCAATGTACTCCCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
3347 3551 0.537188 CTGCAATGTACTCCCTCCGT 59.463 55.000 0.00 0.00 0.00 4.69
3348 3552 0.981183 TGCAATGTACTCCCTCCGTT 59.019 50.000 0.00 0.00 0.00 4.44
3349 3553 1.066430 TGCAATGTACTCCCTCCGTTC 60.066 52.381 0.00 0.00 0.00 3.95
3350 3554 1.742750 GCAATGTACTCCCTCCGTTCC 60.743 57.143 0.00 0.00 0.00 3.62
3351 3555 1.134491 CAATGTACTCCCTCCGTTCCC 60.134 57.143 0.00 0.00 0.00 3.97
3352 3556 0.042131 ATGTACTCCCTCCGTTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
3353 3557 0.178926 TGTACTCCCTCCGTTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
3354 3558 0.978907 GTACTCCCTCCGTTCCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
3355 3559 1.558294 GTACTCCCTCCGTTCCCAAAT 59.442 52.381 0.00 0.00 0.00 2.32
3356 3560 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3357 3561 1.558294 ACTCCCTCCGTTCCCAAATAC 59.442 52.381 0.00 0.00 0.00 1.89
3358 3562 1.838077 CTCCCTCCGTTCCCAAATACT 59.162 52.381 0.00 0.00 0.00 2.12
3359 3563 2.238898 CTCCCTCCGTTCCCAAATACTT 59.761 50.000 0.00 0.00 0.00 2.24
3360 3564 2.026636 TCCCTCCGTTCCCAAATACTTG 60.027 50.000 0.00 0.00 0.00 3.16
3361 3565 2.290705 CCCTCCGTTCCCAAATACTTGT 60.291 50.000 0.00 0.00 0.00 3.16
3362 3566 3.007635 CCTCCGTTCCCAAATACTTGTC 58.992 50.000 0.00 0.00 0.00 3.18
3363 3567 3.307480 CCTCCGTTCCCAAATACTTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3364 3568 4.324267 CTCCGTTCCCAAATACTTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
3365 3569 4.721132 TCCGTTCCCAAATACTTGTCTTT 58.279 39.130 0.00 0.00 0.00 2.52
3366 3570 4.758165 TCCGTTCCCAAATACTTGTCTTTC 59.242 41.667 0.00 0.00 0.00 2.62
3367 3571 4.760204 CCGTTCCCAAATACTTGTCTTTCT 59.240 41.667 0.00 0.00 0.00 2.52
3368 3572 5.935789 CCGTTCCCAAATACTTGTCTTTCTA 59.064 40.000 0.00 0.00 0.00 2.10
3369 3573 6.092259 CCGTTCCCAAATACTTGTCTTTCTAG 59.908 42.308 0.00 0.00 0.00 2.43
3370 3574 6.092259 CGTTCCCAAATACTTGTCTTTCTAGG 59.908 42.308 0.00 0.00 0.00 3.02
3371 3575 5.497474 TCCCAAATACTTGTCTTTCTAGGC 58.503 41.667 0.00 0.00 0.00 3.93
3372 3576 5.013704 TCCCAAATACTTGTCTTTCTAGGCA 59.986 40.000 0.00 0.00 33.22 4.75
3373 3577 5.888161 CCCAAATACTTGTCTTTCTAGGCAT 59.112 40.000 0.00 0.00 35.56 4.40
3374 3578 6.378280 CCCAAATACTTGTCTTTCTAGGCATT 59.622 38.462 0.00 0.00 35.56 3.56
3375 3579 7.093771 CCCAAATACTTGTCTTTCTAGGCATTT 60.094 37.037 0.00 0.00 35.56 2.32
3376 3580 7.970614 CCAAATACTTGTCTTTCTAGGCATTTC 59.029 37.037 0.00 0.00 35.56 2.17
3377 3581 8.514594 CAAATACTTGTCTTTCTAGGCATTTCA 58.485 33.333 0.00 0.00 35.56 2.69
3378 3582 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
3379 3583 6.959639 ACTTGTCTTTCTAGGCATTTCAAA 57.040 33.333 0.00 0.00 35.56 2.69
3380 3584 7.530426 ACTTGTCTTTCTAGGCATTTCAAAT 57.470 32.000 0.00 0.00 35.56 2.32
3381 3585 7.373493 ACTTGTCTTTCTAGGCATTTCAAATG 58.627 34.615 5.68 5.68 35.56 2.32
3382 3586 6.271488 TGTCTTTCTAGGCATTTCAAATGG 57.729 37.500 12.14 0.00 29.10 3.16
3383 3587 6.009589 TGTCTTTCTAGGCATTTCAAATGGA 58.990 36.000 12.14 0.00 29.10 3.41
3384 3588 6.071952 TGTCTTTCTAGGCATTTCAAATGGAC 60.072 38.462 12.14 8.23 29.10 4.02
3385 3589 6.151817 GTCTTTCTAGGCATTTCAAATGGACT 59.848 38.462 12.14 3.08 0.00 3.85
3386 3590 6.375455 TCTTTCTAGGCATTTCAAATGGACTC 59.625 38.462 12.14 0.00 0.00 3.36
3387 3591 5.178096 TCTAGGCATTTCAAATGGACTCA 57.822 39.130 12.14 0.00 0.00 3.41
3388 3592 5.569355 TCTAGGCATTTCAAATGGACTCAA 58.431 37.500 12.14 0.00 0.00 3.02
3389 3593 4.525912 AGGCATTTCAAATGGACTCAAC 57.474 40.909 12.14 0.00 0.00 3.18
3390 3594 3.896888 AGGCATTTCAAATGGACTCAACA 59.103 39.130 12.14 0.00 0.00 3.33
3391 3595 4.529377 AGGCATTTCAAATGGACTCAACAT 59.471 37.500 12.14 0.00 0.00 2.71
3392 3596 5.716228 AGGCATTTCAAATGGACTCAACATA 59.284 36.000 12.14 0.00 0.00 2.29
3393 3597 5.807011 GGCATTTCAAATGGACTCAACATAC 59.193 40.000 12.14 0.00 0.00 2.39
3394 3598 5.512788 GCATTTCAAATGGACTCAACATACG 59.487 40.000 12.14 0.00 0.00 3.06
3395 3599 5.621197 TTTCAAATGGACTCAACATACGG 57.379 39.130 0.00 0.00 0.00 4.02
3396 3600 4.545208 TCAAATGGACTCAACATACGGA 57.455 40.909 0.00 0.00 0.00 4.69
3397 3601 5.097742 TCAAATGGACTCAACATACGGAT 57.902 39.130 0.00 0.00 0.00 4.18
3398 3602 4.875536 TCAAATGGACTCAACATACGGATG 59.124 41.667 5.94 5.94 39.16 3.51
3400 3604 5.607939 AATGGACTCAACATACGGATGTA 57.392 39.130 15.10 0.00 45.93 2.29
3401 3605 5.808366 ATGGACTCAACATACGGATGTAT 57.192 39.130 15.10 0.00 45.93 2.29
3438 3642 9.638239 TTTAAAATGTAGATCCACTCATTTTGC 57.362 29.630 22.85 0.00 41.05 3.68
3439 3643 5.490139 AATGTAGATCCACTCATTTTGCG 57.510 39.130 0.00 0.00 0.00 4.85
3440 3644 3.937814 TGTAGATCCACTCATTTTGCGT 58.062 40.909 0.00 0.00 0.00 5.24
3441 3645 3.932710 TGTAGATCCACTCATTTTGCGTC 59.067 43.478 0.00 0.00 0.00 5.19
3442 3646 2.002586 AGATCCACTCATTTTGCGTCG 58.997 47.619 0.00 0.00 0.00 5.12
3443 3647 1.732259 GATCCACTCATTTTGCGTCGT 59.268 47.619 0.00 0.00 0.00 4.34
3444 3648 2.442212 TCCACTCATTTTGCGTCGTA 57.558 45.000 0.00 0.00 0.00 3.43
3445 3649 2.967362 TCCACTCATTTTGCGTCGTAT 58.033 42.857 0.00 0.00 0.00 3.06
3446 3650 2.670905 TCCACTCATTTTGCGTCGTATG 59.329 45.455 0.00 0.00 0.00 2.39
3447 3651 2.415168 CCACTCATTTTGCGTCGTATGT 59.585 45.455 0.00 0.00 0.00 2.29
3448 3652 3.615056 CCACTCATTTTGCGTCGTATGTA 59.385 43.478 0.00 0.00 0.00 2.29
3449 3653 4.259810 CCACTCATTTTGCGTCGTATGTAG 60.260 45.833 0.00 0.00 0.00 2.74
3450 3654 4.326278 CACTCATTTTGCGTCGTATGTAGT 59.674 41.667 0.00 0.00 0.00 2.73
3451 3655 4.561606 ACTCATTTTGCGTCGTATGTAGTC 59.438 41.667 0.00 0.00 0.00 2.59
3452 3656 4.487019 TCATTTTGCGTCGTATGTAGTCA 58.513 39.130 0.00 0.00 0.00 3.41
3453 3657 4.325204 TCATTTTGCGTCGTATGTAGTCAC 59.675 41.667 0.00 0.00 0.00 3.67
3454 3658 3.564235 TTTGCGTCGTATGTAGTCACT 57.436 42.857 0.00 0.00 0.00 3.41
3455 3659 3.564235 TTGCGTCGTATGTAGTCACTT 57.436 42.857 0.00 0.00 0.00 3.16
3456 3660 2.858839 TGCGTCGTATGTAGTCACTTG 58.141 47.619 0.00 0.00 0.00 3.16
3457 3661 2.227149 TGCGTCGTATGTAGTCACTTGT 59.773 45.455 0.00 0.00 0.00 3.16
3458 3662 3.240069 GCGTCGTATGTAGTCACTTGTT 58.760 45.455 0.00 0.00 0.00 2.83
3459 3663 3.059044 GCGTCGTATGTAGTCACTTGTTG 59.941 47.826 0.00 0.00 0.00 3.33
3460 3664 4.469552 CGTCGTATGTAGTCACTTGTTGA 58.530 43.478 0.00 0.00 0.00 3.18
3461 3665 4.913345 CGTCGTATGTAGTCACTTGTTGAA 59.087 41.667 0.00 0.00 35.39 2.69
3462 3666 5.400188 CGTCGTATGTAGTCACTTGTTGAAA 59.600 40.000 0.00 0.00 35.39 2.69
3463 3667 6.089016 CGTCGTATGTAGTCACTTGTTGAAAT 59.911 38.462 0.00 0.00 35.39 2.17
3464 3668 7.445836 GTCGTATGTAGTCACTTGTTGAAATC 58.554 38.462 0.00 0.00 35.39 2.17
3465 3669 7.328737 GTCGTATGTAGTCACTTGTTGAAATCT 59.671 37.037 0.00 0.00 35.39 2.40
3466 3670 7.541091 TCGTATGTAGTCACTTGTTGAAATCTC 59.459 37.037 0.00 0.00 35.39 2.75
3467 3671 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
3468 3672 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
3469 3673 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
3470 3674 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
3471 3675 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
3472 3676 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
3473 3677 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
3474 3678 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
3475 3679 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
3476 3680 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
3477 3681 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
3478 3682 9.050601 ACTTGTTGAAATCTCTAGAAAGACAAG 57.949 33.333 17.75 17.75 33.18 3.16
3479 3683 8.964476 TTGTTGAAATCTCTAGAAAGACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
3490 3694 9.291664 CTCTAGAAAGACAAGTATTTAGGAACG 57.708 37.037 0.00 0.00 0.00 3.95
3491 3695 8.248945 TCTAGAAAGACAAGTATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
3492 3696 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
3493 3697 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
3494 3698 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3495 3699 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3496 3700 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3497 3701 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3498 3702 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
3510 3714 1.350351 GGAGGGAGTATGATGCATGCT 59.650 52.381 20.33 4.11 39.36 3.79
3511 3715 2.424557 GAGGGAGTATGATGCATGCTG 58.575 52.381 20.33 0.00 36.96 4.41
3583 3787 8.470002 GCTTGATTAATGAACCTACAAAATCCT 58.530 33.333 0.00 0.00 31.37 3.24
3625 3829 2.241176 TCCAGGTATTGTGGACATTCCC 59.759 50.000 0.00 0.00 39.28 3.97
3626 3830 2.242196 CCAGGTATTGTGGACATTCCCT 59.758 50.000 0.00 0.00 37.23 4.20
3642 3856 2.964209 TCCCTCGGAGCATCTTAATCT 58.036 47.619 0.00 0.00 33.73 2.40
3651 3865 7.327975 TCGGAGCATCTTAATCTTAAGTTTCA 58.672 34.615 1.63 0.00 40.69 2.69
3682 3896 8.638685 ATCAAAGAAAAATTCCATTATCAGCG 57.361 30.769 0.00 0.00 0.00 5.18
3683 3897 6.531240 TCAAAGAAAAATTCCATTATCAGCGC 59.469 34.615 0.00 0.00 0.00 5.92
3684 3898 5.581126 AGAAAAATTCCATTATCAGCGCA 57.419 34.783 11.47 0.00 0.00 6.09
3685 3899 5.343249 AGAAAAATTCCATTATCAGCGCAC 58.657 37.500 11.47 0.00 0.00 5.34
3686 3900 4.989279 AAAATTCCATTATCAGCGCACT 57.011 36.364 11.47 0.00 0.00 4.40
3687 3901 4.558538 AAATTCCATTATCAGCGCACTC 57.441 40.909 11.47 0.00 0.00 3.51
3688 3902 2.988010 TTCCATTATCAGCGCACTCT 57.012 45.000 11.47 0.00 0.00 3.24
3689 3903 2.988010 TCCATTATCAGCGCACTCTT 57.012 45.000 11.47 0.00 0.00 2.85
3690 3904 2.826428 TCCATTATCAGCGCACTCTTC 58.174 47.619 11.47 0.00 0.00 2.87
3691 3905 2.168313 TCCATTATCAGCGCACTCTTCA 59.832 45.455 11.47 0.00 0.00 3.02
3692 3906 3.136763 CCATTATCAGCGCACTCTTCAT 58.863 45.455 11.47 0.00 0.00 2.57
3693 3907 3.186001 CCATTATCAGCGCACTCTTCATC 59.814 47.826 11.47 0.00 0.00 2.92
3694 3908 3.525268 TTATCAGCGCACTCTTCATCA 57.475 42.857 11.47 0.00 0.00 3.07
3695 3909 2.391616 ATCAGCGCACTCTTCATCAA 57.608 45.000 11.47 0.00 0.00 2.57
3696 3910 2.391616 TCAGCGCACTCTTCATCAAT 57.608 45.000 11.47 0.00 0.00 2.57
3697 3911 2.274437 TCAGCGCACTCTTCATCAATC 58.726 47.619 11.47 0.00 0.00 2.67
3698 3912 1.329906 CAGCGCACTCTTCATCAATCC 59.670 52.381 11.47 0.00 0.00 3.01
3699 3913 1.065926 AGCGCACTCTTCATCAATCCA 60.066 47.619 11.47 0.00 0.00 3.41
3700 3914 1.945394 GCGCACTCTTCATCAATCCAT 59.055 47.619 0.30 0.00 0.00 3.41
3701 3915 2.032204 GCGCACTCTTCATCAATCCATC 60.032 50.000 0.30 0.00 0.00 3.51
3702 3916 3.464907 CGCACTCTTCATCAATCCATCT 58.535 45.455 0.00 0.00 0.00 2.90
3703 3917 3.875727 CGCACTCTTCATCAATCCATCTT 59.124 43.478 0.00 0.00 0.00 2.40
3704 3918 5.052481 CGCACTCTTCATCAATCCATCTTA 58.948 41.667 0.00 0.00 0.00 2.10
3705 3919 5.525012 CGCACTCTTCATCAATCCATCTTAA 59.475 40.000 0.00 0.00 0.00 1.85
3706 3920 6.292757 CGCACTCTTCATCAATCCATCTTAAG 60.293 42.308 0.00 0.00 0.00 1.85
3707 3921 6.541641 GCACTCTTCATCAATCCATCTTAAGT 59.458 38.462 1.63 0.00 0.00 2.24
3708 3922 7.066766 GCACTCTTCATCAATCCATCTTAAGTT 59.933 37.037 1.63 0.00 0.00 2.66
3709 3923 8.954350 CACTCTTCATCAATCCATCTTAAGTTT 58.046 33.333 1.63 0.00 0.00 2.66
3710 3924 9.171877 ACTCTTCATCAATCCATCTTAAGTTTC 57.828 33.333 1.63 0.00 0.00 2.78
3711 3925 8.511604 TCTTCATCAATCCATCTTAAGTTTCC 57.488 34.615 1.63 0.00 0.00 3.13
3712 3926 8.331740 TCTTCATCAATCCATCTTAAGTTTCCT 58.668 33.333 1.63 0.00 0.00 3.36
3713 3927 7.870509 TCATCAATCCATCTTAAGTTTCCTG 57.129 36.000 1.63 0.00 0.00 3.86
3714 3928 7.405292 TCATCAATCCATCTTAAGTTTCCTGT 58.595 34.615 1.63 0.00 0.00 4.00
3715 3929 7.890127 TCATCAATCCATCTTAAGTTTCCTGTT 59.110 33.333 1.63 0.00 0.00 3.16
3716 3930 8.526147 CATCAATCCATCTTAAGTTTCCTGTTT 58.474 33.333 1.63 0.00 0.00 2.83
3717 3931 9.753674 ATCAATCCATCTTAAGTTTCCTGTTTA 57.246 29.630 1.63 0.00 0.00 2.01
3718 3932 9.753674 TCAATCCATCTTAAGTTTCCTGTTTAT 57.246 29.630 1.63 0.00 0.00 1.40
3720 3934 7.843490 TCCATCTTAAGTTTCCTGTTTATCG 57.157 36.000 1.63 0.00 0.00 2.92
3721 3935 7.617225 TCCATCTTAAGTTTCCTGTTTATCGA 58.383 34.615 1.63 0.00 0.00 3.59
3722 3936 8.098286 TCCATCTTAAGTTTCCTGTTTATCGAA 58.902 33.333 1.63 0.00 0.00 3.71
3723 3937 8.391106 CCATCTTAAGTTTCCTGTTTATCGAAG 58.609 37.037 1.63 0.00 0.00 3.79
3724 3938 9.151471 CATCTTAAGTTTCCTGTTTATCGAAGA 57.849 33.333 1.63 0.00 45.75 2.87
3725 3939 9.720769 ATCTTAAGTTTCCTGTTTATCGAAGAA 57.279 29.630 1.63 0.00 43.58 2.52
3726 3940 9.550406 TCTTAAGTTTCCTGTTTATCGAAGAAA 57.450 29.630 1.63 0.00 43.58 2.52
3742 3956 6.486248 TCGAAGAAAAATTCCATTATCAGCG 58.514 36.000 0.00 0.00 0.00 5.18
3745 3959 5.343249 AGAAAAATTCCATTATCAGCGCAC 58.657 37.500 11.47 0.00 0.00 5.34
3781 3995 2.515926 TGGATCGAGCTAGCAATCAC 57.484 50.000 18.83 10.68 0.00 3.06
3790 4004 1.333258 GCTAGCAATCACGGAATTCGC 60.333 52.381 10.63 0.00 43.89 4.70
3805 4019 5.744345 CGGAATTCGCTATGCTATAAGGTAG 59.256 44.000 0.00 0.00 0.00 3.18
3847 4061 3.252974 CACATCTACAGTGGGAGTTCC 57.747 52.381 0.00 0.00 33.43 3.62
3848 4062 2.834549 CACATCTACAGTGGGAGTTCCT 59.165 50.000 0.00 0.00 36.20 3.36
3849 4063 4.023980 CACATCTACAGTGGGAGTTCCTA 58.976 47.826 0.00 0.00 36.20 2.94
3850 4064 4.651503 CACATCTACAGTGGGAGTTCCTAT 59.348 45.833 0.00 0.00 36.20 2.57
3851 4065 4.896482 ACATCTACAGTGGGAGTTCCTATC 59.104 45.833 0.00 0.00 36.20 2.08
3852 4066 4.883021 TCTACAGTGGGAGTTCCTATCT 57.117 45.455 0.00 0.00 36.20 1.98
3853 4067 5.988865 TCTACAGTGGGAGTTCCTATCTA 57.011 43.478 0.00 0.00 36.20 1.98
3854 4068 5.692928 TCTACAGTGGGAGTTCCTATCTAC 58.307 45.833 0.00 0.00 36.20 2.59
3855 4069 4.611564 ACAGTGGGAGTTCCTATCTACT 57.388 45.455 0.00 0.00 36.20 2.57
3856 4070 4.949121 ACAGTGGGAGTTCCTATCTACTT 58.051 43.478 0.00 0.00 36.20 2.24
3857 4071 5.342866 ACAGTGGGAGTTCCTATCTACTTT 58.657 41.667 0.00 0.00 36.20 2.66
3858 4072 5.422650 ACAGTGGGAGTTCCTATCTACTTTC 59.577 44.000 0.00 0.00 36.20 2.62
3859 4073 4.645588 AGTGGGAGTTCCTATCTACTTTCG 59.354 45.833 0.00 0.00 36.20 3.46
3860 4074 4.401837 GTGGGAGTTCCTATCTACTTTCGT 59.598 45.833 0.00 0.00 36.20 3.85
3861 4075 5.021458 TGGGAGTTCCTATCTACTTTCGTT 58.979 41.667 0.00 0.00 36.20 3.85
3862 4076 5.482878 TGGGAGTTCCTATCTACTTTCGTTT 59.517 40.000 0.00 0.00 36.20 3.60
3863 4077 6.041511 GGGAGTTCCTATCTACTTTCGTTTC 58.958 44.000 0.00 0.00 35.95 2.78
3864 4078 6.041511 GGAGTTCCTATCTACTTTCGTTTCC 58.958 44.000 0.00 0.00 0.00 3.13
3865 4079 5.975282 AGTTCCTATCTACTTTCGTTTCCC 58.025 41.667 0.00 0.00 0.00 3.97
3866 4080 5.720520 AGTTCCTATCTACTTTCGTTTCCCT 59.279 40.000 0.00 0.00 0.00 4.20
3867 4081 6.212993 AGTTCCTATCTACTTTCGTTTCCCTT 59.787 38.462 0.00 0.00 0.00 3.95
3868 4082 6.218108 TCCTATCTACTTTCGTTTCCCTTC 57.782 41.667 0.00 0.00 0.00 3.46
3869 4083 5.956563 TCCTATCTACTTTCGTTTCCCTTCT 59.043 40.000 0.00 0.00 0.00 2.85
3870 4084 6.439692 TCCTATCTACTTTCGTTTCCCTTCTT 59.560 38.462 0.00 0.00 0.00 2.52
3871 4085 7.616935 TCCTATCTACTTTCGTTTCCCTTCTTA 59.383 37.037 0.00 0.00 0.00 2.10
3887 4101 8.122646 TCCCTTCTTAGTCCCTATCTACTTTA 57.877 38.462 0.00 0.00 0.00 1.85
3929 4184 8.236084 GCTTTGCCAATACATCATATTGATTC 57.764 34.615 7.99 0.00 34.28 2.52
3942 4197 8.491152 CATCATATTGATTCGACACTTCCTTAC 58.509 37.037 0.00 0.00 34.28 2.34
3975 4230 2.061028 GCATTGCTTTCAGGAAAACGG 58.939 47.619 0.16 0.00 0.00 4.44
3976 4231 2.288152 GCATTGCTTTCAGGAAAACGGA 60.288 45.455 0.16 0.00 0.00 4.69
3985 4240 5.477607 TTCAGGAAAACGGAGAGTATTCA 57.522 39.130 0.00 0.00 0.00 2.57
3991 4246 6.149474 AGGAAAACGGAGAGTATTCATGTTTG 59.851 38.462 0.00 0.00 31.69 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 1.269448 CAGAACAATGGGACGGTTTGG 59.731 52.381 0.00 0.00 0.00 3.28
84 86 9.745880 CCCGATTTCGTAATAGTAATAGCATAT 57.254 33.333 0.00 0.00 37.74 1.78
93 95 4.142204 TGCACACCCGATTTCGTAATAGTA 60.142 41.667 0.00 0.00 37.74 1.82
94 96 3.192466 GCACACCCGATTTCGTAATAGT 58.808 45.455 0.00 0.00 37.74 2.12
95 97 3.191669 TGCACACCCGATTTCGTAATAG 58.808 45.455 0.00 0.00 37.74 1.73
108 110 1.525077 TTGACGAACCTGCACACCC 60.525 57.895 0.00 0.00 0.00 4.61
122 128 5.901884 CGCATTCCGTTTCTATATTGTTGAC 59.098 40.000 0.00 0.00 0.00 3.18
142 148 9.542462 TGCTTAAAACTTAGAATAGATACGCAT 57.458 29.630 0.00 0.00 0.00 4.73
158 164 4.114794 CAGTTGCTTGCTTGCTTAAAACT 58.885 39.130 3.47 2.31 0.00 2.66
163 169 0.314935 GCCAGTTGCTTGCTTGCTTA 59.685 50.000 3.47 0.00 36.87 3.09
199 205 1.819305 GCCTTGGCTCCTTCAACTGAA 60.819 52.381 4.11 0.00 0.00 3.02
200 206 0.250901 GCCTTGGCTCCTTCAACTGA 60.251 55.000 4.11 0.00 0.00 3.41
201 207 0.538057 TGCCTTGGCTCCTTCAACTG 60.538 55.000 13.18 0.00 0.00 3.16
202 208 0.538287 GTGCCTTGGCTCCTTCAACT 60.538 55.000 13.18 0.00 0.00 3.16
568 583 1.590259 GAGCTTCCATCCGAGCGTC 60.590 63.158 0.00 0.00 43.53 5.19
569 584 2.496817 GAGCTTCCATCCGAGCGT 59.503 61.111 0.00 0.00 43.53 5.07
570 585 2.279784 GGAGCTTCCATCCGAGCG 60.280 66.667 0.00 0.00 43.53 5.03
571 586 1.068921 GAGGAGCTTCCATCCGAGC 59.931 63.158 5.21 0.00 42.02 5.03
572 587 1.103987 TCGAGGAGCTTCCATCCGAG 61.104 60.000 5.21 0.00 42.02 4.63
573 588 0.468214 ATCGAGGAGCTTCCATCCGA 60.468 55.000 12.59 12.59 42.02 4.55
574 589 0.038709 GATCGAGGAGCTTCCATCCG 60.039 60.000 5.21 5.56 42.02 4.18
575 590 0.320050 GGATCGAGGAGCTTCCATCC 59.680 60.000 0.00 0.00 39.61 3.51
576 591 1.043816 TGGATCGAGGAGCTTCCATC 58.956 55.000 0.00 0.00 39.61 3.51
577 592 0.755686 GTGGATCGAGGAGCTTCCAT 59.244 55.000 5.87 0.00 40.22 3.41
578 593 1.330655 GGTGGATCGAGGAGCTTCCA 61.331 60.000 0.00 0.00 39.61 3.53
579 594 1.443828 GGTGGATCGAGGAGCTTCC 59.556 63.158 0.00 0.00 36.58 3.46
633 663 2.032681 AACTGGGCCTTGCTCGAC 59.967 61.111 4.53 0.00 0.00 4.20
638 668 1.667722 CAAAGGAACTGGGCCTTGC 59.332 57.895 4.53 0.00 44.72 4.01
657 687 4.576873 GGGCTTCTAGCTTAATTTCCACTC 59.423 45.833 0.00 0.00 41.99 3.51
660 690 4.584638 TGGGCTTCTAGCTTAATTTCCA 57.415 40.909 0.00 0.00 41.99 3.53
691 745 1.139058 CTAGGCCCATGAAGCGTAAGT 59.861 52.381 0.00 0.00 41.68 2.24
765 819 0.394899 GATGGGCCTGAAAGTGGGAG 60.395 60.000 4.53 0.00 0.00 4.30
793 847 4.754667 GCGAGGTTGGGGTCGGTC 62.755 72.222 0.00 0.00 36.67 4.79
896 959 3.244976 GCTGATGCGTTGTGCTATTTTT 58.755 40.909 0.00 0.00 46.63 1.94
897 960 2.415893 GGCTGATGCGTTGTGCTATTTT 60.416 45.455 0.00 0.00 46.63 1.82
898 961 1.133025 GGCTGATGCGTTGTGCTATTT 59.867 47.619 0.00 0.00 46.63 1.40
899 962 0.734889 GGCTGATGCGTTGTGCTATT 59.265 50.000 0.00 0.00 46.63 1.73
900 963 1.097547 GGGCTGATGCGTTGTGCTAT 61.098 55.000 0.00 0.00 46.63 2.97
901 964 1.745115 GGGCTGATGCGTTGTGCTA 60.745 57.895 0.00 0.00 46.63 3.49
1290 1370 4.899239 CGCCCTAAGCAGCCGAGG 62.899 72.222 3.49 3.49 44.04 4.63
1369 1454 0.948678 ACAACGAAACCAATGTCCCG 59.051 50.000 0.00 0.00 0.00 5.14
1396 1487 0.187361 TTTCACCCCAAACCTCCCAG 59.813 55.000 0.00 0.00 0.00 4.45
1460 1555 6.511121 GCAGAGTACAATTCAAAACGAACTCA 60.511 38.462 0.00 0.00 36.12 3.41
1461 1556 5.846473 GCAGAGTACAATTCAAAACGAACTC 59.154 40.000 0.00 0.00 36.12 3.01
1462 1557 5.295787 TGCAGAGTACAATTCAAAACGAACT 59.704 36.000 0.00 0.00 36.12 3.01
1463 1558 5.507077 TGCAGAGTACAATTCAAAACGAAC 58.493 37.500 0.00 0.00 36.12 3.95
1466 1561 5.734498 GCTATGCAGAGTACAATTCAAAACG 59.266 40.000 10.55 0.00 0.00 3.60
1467 1562 6.744537 CAGCTATGCAGAGTACAATTCAAAAC 59.255 38.462 10.55 0.00 0.00 2.43
1474 1569 3.201290 GCACAGCTATGCAGAGTACAAT 58.799 45.455 13.21 0.00 45.39 2.71
1519 1619 5.665916 AGCCTCAAACTAAAATGGATTGG 57.334 39.130 0.00 0.00 0.00 3.16
1520 1620 6.603201 TCCTAGCCTCAAACTAAAATGGATTG 59.397 38.462 0.00 0.00 0.00 2.67
1527 1627 5.578157 AACCTCCTAGCCTCAAACTAAAA 57.422 39.130 0.00 0.00 0.00 1.52
1633 1736 3.006859 AGCATAGCACACAGACACAGTAA 59.993 43.478 0.00 0.00 0.00 2.24
1667 1773 3.821033 AGGATTTTGTACACCTGAAGCAC 59.179 43.478 0.00 0.00 0.00 4.40
1681 1787 3.191371 GTGCAGAAGTGGGTAGGATTTTG 59.809 47.826 0.00 0.00 0.00 2.44
1742 1852 5.126545 GGGGATCACCACAATTACCTTAAAC 59.873 44.000 9.87 0.00 42.91 2.01
1777 1887 1.471676 CGCACTAACCTCCTAGCCTTG 60.472 57.143 0.00 0.00 0.00 3.61
1800 1910 7.370383 TCAAGCTGAAAATTAATTGAGACCAC 58.630 34.615 0.39 0.00 0.00 4.16
1887 2009 8.151141 ACATCAGAACAAGCATATCACAATAG 57.849 34.615 0.00 0.00 0.00 1.73
1944 2066 7.978982 CAGTAGTGCTAAAATAAGTGCAGAAT 58.021 34.615 0.00 0.00 36.03 2.40
2034 2174 0.109272 TCGATGGCACGAAGTCAGTC 60.109 55.000 9.19 0.00 41.61 3.51
2035 2175 0.532573 ATCGATGGCACGAAGTCAGT 59.467 50.000 14.26 0.00 41.61 3.41
2038 2178 1.859080 GGTAATCGATGGCACGAAGTC 59.141 52.381 14.26 8.51 41.61 3.01
2043 2183 2.795175 ACTAGGTAATCGATGGCACG 57.205 50.000 0.00 0.00 0.00 5.34
2052 2192 4.303086 TGCTGCGACTAACTAGGTAATC 57.697 45.455 0.00 0.00 0.00 1.75
2065 2205 0.960364 TGAAAAGGGGATGCTGCGAC 60.960 55.000 0.00 0.00 0.00 5.19
2067 2207 0.171903 CTTGAAAAGGGGATGCTGCG 59.828 55.000 0.00 0.00 41.27 5.18
2121 2261 4.211125 TCATCAACCTGCAACCAAGTAAA 58.789 39.130 0.00 0.00 0.00 2.01
2126 2266 4.832266 AGTAAATCATCAACCTGCAACCAA 59.168 37.500 0.00 0.00 0.00 3.67
2139 2279 4.090761 TGGATGCCTCCAGTAAATCATC 57.909 45.455 6.63 0.00 46.95 2.92
2171 2311 0.962356 CAACCATGGAGGGCAGTGTC 60.962 60.000 21.47 0.00 43.89 3.67
2175 2315 1.751927 GCTCAACCATGGAGGGCAG 60.752 63.158 21.47 7.61 43.89 4.85
2249 2389 1.094785 CAATCCCACGCTTAACCCTG 58.905 55.000 0.00 0.00 0.00 4.45
2300 2440 4.811557 GCAACTTGAACTTACTCTGTGACT 59.188 41.667 0.00 0.00 0.00 3.41
2382 2550 5.415701 AGGTAACATTTACTCAACAGGCATG 59.584 40.000 0.00 0.00 41.41 4.06
2404 2572 3.055963 AGAAGAGAATGTGAGCACTCAGG 60.056 47.826 0.00 0.00 40.75 3.86
2409 2577 4.512944 TGAAACAGAAGAGAATGTGAGCAC 59.487 41.667 0.00 0.00 0.00 4.40
2551 2720 5.371526 TCATTCAGTTTCTTCAAGAGCTGT 58.628 37.500 16.12 0.00 33.66 4.40
2586 2755 1.059006 GGTGCTCTGGGGATCAGGAT 61.059 60.000 0.00 0.00 43.53 3.24
2595 2766 2.366916 AGAGATAAATCGGTGCTCTGGG 59.633 50.000 0.00 0.00 34.85 4.45
2601 2772 5.593010 ACTACAGAAGAGATAAATCGGTGC 58.407 41.667 0.00 0.00 0.00 5.01
2651 2829 2.927477 CAAATGATGTGAGTTGCATGCC 59.073 45.455 16.68 0.00 0.00 4.40
2655 2833 2.885894 TCAGCAAATGATGTGAGTTGCA 59.114 40.909 7.32 0.00 46.73 4.08
2808 3001 5.049818 GTCCCAATCATTCTCTCTTTATGCG 60.050 44.000 0.00 0.00 0.00 4.73
2813 3006 4.826274 TCGTCCCAATCATTCTCTCTTT 57.174 40.909 0.00 0.00 0.00 2.52
2815 3008 4.826274 TTTCGTCCCAATCATTCTCTCT 57.174 40.909 0.00 0.00 0.00 3.10
2820 3013 4.278170 TGGCATATTTCGTCCCAATCATTC 59.722 41.667 0.00 0.00 0.00 2.67
2869 3062 4.066646 TCAAGTGACACCGAGATGAAAA 57.933 40.909 0.84 0.00 0.00 2.29
2873 3066 3.615937 CAGAATCAAGTGACACCGAGATG 59.384 47.826 0.84 0.00 0.00 2.90
2874 3067 3.511540 TCAGAATCAAGTGACACCGAGAT 59.488 43.478 0.84 0.70 0.00 2.75
2875 3068 2.890945 TCAGAATCAAGTGACACCGAGA 59.109 45.455 0.84 0.00 0.00 4.04
2876 3069 3.303881 TCAGAATCAAGTGACACCGAG 57.696 47.619 0.84 0.00 0.00 4.63
2878 3071 3.854666 AGATCAGAATCAAGTGACACCG 58.145 45.455 0.84 0.00 34.07 4.94
2918 3111 2.160813 GCCGAATTTTCTGCGAGGTAAA 59.839 45.455 0.00 0.00 0.00 2.01
2919 3112 1.735571 GCCGAATTTTCTGCGAGGTAA 59.264 47.619 0.00 0.00 0.00 2.85
2920 3113 1.338294 TGCCGAATTTTCTGCGAGGTA 60.338 47.619 2.91 0.00 39.83 3.08
3039 3232 8.738645 ACATTGGAAATCTCTGTATAGGTTTC 57.261 34.615 1.78 1.78 0.00 2.78
3042 3235 8.554490 AGTACATTGGAAATCTCTGTATAGGT 57.446 34.615 0.00 0.00 0.00 3.08
3055 3250 6.869695 TCTAGTCGCATTAGTACATTGGAAA 58.130 36.000 0.00 0.00 0.00 3.13
3145 3341 6.624423 AGCACAGCTTATTGAATTTAGGTTG 58.376 36.000 0.00 0.00 33.89 3.77
3306 3510 1.985473 AGCATTCCAGTTCAACAGCA 58.015 45.000 0.00 0.00 0.00 4.41
3340 3544 2.290705 ACAAGTATTTGGGAACGGAGGG 60.291 50.000 2.81 0.00 38.66 4.30
3341 3545 3.007635 GACAAGTATTTGGGAACGGAGG 58.992 50.000 2.81 0.00 38.66 4.30
3342 3546 3.939066 AGACAAGTATTTGGGAACGGAG 58.061 45.455 2.81 0.00 38.66 4.63
3343 3547 4.360951 AAGACAAGTATTTGGGAACGGA 57.639 40.909 2.81 0.00 38.66 4.69
3344 3548 4.760204 AGAAAGACAAGTATTTGGGAACGG 59.240 41.667 2.81 0.00 38.66 4.44
3345 3549 5.941948 AGAAAGACAAGTATTTGGGAACG 57.058 39.130 2.81 0.00 38.66 3.95
3346 3550 6.127980 GCCTAGAAAGACAAGTATTTGGGAAC 60.128 42.308 2.81 0.00 38.66 3.62
3347 3551 5.944007 GCCTAGAAAGACAAGTATTTGGGAA 59.056 40.000 2.81 0.00 38.66 3.97
3348 3552 5.013704 TGCCTAGAAAGACAAGTATTTGGGA 59.986 40.000 2.81 0.00 38.66 4.37
3349 3553 5.253330 TGCCTAGAAAGACAAGTATTTGGG 58.747 41.667 2.81 0.00 38.66 4.12
3350 3554 7.396540 AATGCCTAGAAAGACAAGTATTTGG 57.603 36.000 2.81 0.00 38.66 3.28
3351 3555 8.514594 TGAAATGCCTAGAAAGACAAGTATTTG 58.485 33.333 0.00 0.00 40.24 2.32
3352 3556 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
3353 3557 8.635765 TTGAAATGCCTAGAAAGACAAGTATT 57.364 30.769 0.00 0.00 0.00 1.89
3354 3558 8.635765 TTTGAAATGCCTAGAAAGACAAGTAT 57.364 30.769 0.00 0.00 0.00 2.12
3355 3559 8.514594 CATTTGAAATGCCTAGAAAGACAAGTA 58.485 33.333 4.82 0.00 0.00 2.24
3356 3560 6.959639 TTTGAAATGCCTAGAAAGACAAGT 57.040 33.333 0.00 0.00 0.00 3.16
3357 3561 6.810182 CCATTTGAAATGCCTAGAAAGACAAG 59.190 38.462 12.26 0.00 0.00 3.16
3358 3562 6.493115 TCCATTTGAAATGCCTAGAAAGACAA 59.507 34.615 12.26 0.00 0.00 3.18
3359 3563 6.009589 TCCATTTGAAATGCCTAGAAAGACA 58.990 36.000 12.26 0.00 0.00 3.41
3360 3564 6.151817 AGTCCATTTGAAATGCCTAGAAAGAC 59.848 38.462 12.26 10.86 0.00 3.01
3361 3565 6.248433 AGTCCATTTGAAATGCCTAGAAAGA 58.752 36.000 12.26 0.00 0.00 2.52
3362 3566 6.151648 TGAGTCCATTTGAAATGCCTAGAAAG 59.848 38.462 12.26 0.00 0.00 2.62
3363 3567 6.009589 TGAGTCCATTTGAAATGCCTAGAAA 58.990 36.000 12.26 0.00 0.00 2.52
3364 3568 5.569355 TGAGTCCATTTGAAATGCCTAGAA 58.431 37.500 12.26 0.00 0.00 2.10
3365 3569 5.178096 TGAGTCCATTTGAAATGCCTAGA 57.822 39.130 12.26 1.83 0.00 2.43
3366 3570 5.183713 TGTTGAGTCCATTTGAAATGCCTAG 59.816 40.000 12.26 0.00 0.00 3.02
3367 3571 5.076182 TGTTGAGTCCATTTGAAATGCCTA 58.924 37.500 12.26 0.00 0.00 3.93
3368 3572 3.896888 TGTTGAGTCCATTTGAAATGCCT 59.103 39.130 12.26 9.70 0.00 4.75
3369 3573 4.255833 TGTTGAGTCCATTTGAAATGCC 57.744 40.909 12.26 5.23 0.00 4.40
3370 3574 5.512788 CGTATGTTGAGTCCATTTGAAATGC 59.487 40.000 12.26 0.23 0.00 3.56
3371 3575 6.029607 CCGTATGTTGAGTCCATTTGAAATG 58.970 40.000 10.84 10.84 0.00 2.32
3372 3576 5.943416 TCCGTATGTTGAGTCCATTTGAAAT 59.057 36.000 0.00 0.00 0.00 2.17
3373 3577 5.309638 TCCGTATGTTGAGTCCATTTGAAA 58.690 37.500 0.00 0.00 0.00 2.69
3374 3578 4.900684 TCCGTATGTTGAGTCCATTTGAA 58.099 39.130 0.00 0.00 0.00 2.69
3375 3579 4.545208 TCCGTATGTTGAGTCCATTTGA 57.455 40.909 0.00 0.00 0.00 2.69
3376 3580 4.635765 ACATCCGTATGTTGAGTCCATTTG 59.364 41.667 0.00 0.00 44.07 2.32
3377 3581 4.843728 ACATCCGTATGTTGAGTCCATTT 58.156 39.130 0.00 0.00 44.07 2.32
3378 3582 4.487714 ACATCCGTATGTTGAGTCCATT 57.512 40.909 0.00 0.00 44.07 3.16
3379 3583 5.541845 CATACATCCGTATGTTGAGTCCAT 58.458 41.667 0.00 0.00 46.70 3.41
3380 3584 4.944048 CATACATCCGTATGTTGAGTCCA 58.056 43.478 0.00 0.00 46.70 4.02
3412 3616 9.638239 GCAAAATGAGTGGATCTACATTTTAAA 57.362 29.630 12.16 0.00 45.06 1.52
3413 3617 7.967854 CGCAAAATGAGTGGATCTACATTTTAA 59.032 33.333 12.16 0.00 45.06 1.52
3414 3618 7.120579 ACGCAAAATGAGTGGATCTACATTTTA 59.879 33.333 12.16 0.00 45.06 1.52
3415 3619 6.071952 ACGCAAAATGAGTGGATCTACATTTT 60.072 34.615 12.16 12.07 46.58 1.82
3416 3620 5.415701 ACGCAAAATGAGTGGATCTACATTT 59.584 36.000 12.16 6.87 42.25 2.32
3417 3621 4.943705 ACGCAAAATGAGTGGATCTACATT 59.056 37.500 12.16 0.70 34.99 2.71
3418 3622 4.517285 ACGCAAAATGAGTGGATCTACAT 58.483 39.130 12.16 0.00 0.00 2.29
3419 3623 3.932710 GACGCAAAATGAGTGGATCTACA 59.067 43.478 12.16 0.00 28.29 2.74
3420 3624 3.000322 CGACGCAAAATGAGTGGATCTAC 60.000 47.826 0.00 0.00 28.29 2.59
3421 3625 3.186909 CGACGCAAAATGAGTGGATCTA 58.813 45.455 0.00 0.00 28.29 1.98
3422 3626 2.002586 CGACGCAAAATGAGTGGATCT 58.997 47.619 0.00 0.00 28.29 2.75
3423 3627 1.732259 ACGACGCAAAATGAGTGGATC 59.268 47.619 0.00 0.00 31.20 3.36
3424 3628 1.808411 ACGACGCAAAATGAGTGGAT 58.192 45.000 0.00 0.00 31.20 3.41
3425 3629 2.442212 TACGACGCAAAATGAGTGGA 57.558 45.000 0.00 0.00 31.20 4.02
3426 3630 2.415168 ACATACGACGCAAAATGAGTGG 59.585 45.455 0.00 0.00 32.74 4.00
3427 3631 3.722555 ACATACGACGCAAAATGAGTG 57.277 42.857 0.00 0.00 28.29 3.51
3428 3632 4.491676 ACTACATACGACGCAAAATGAGT 58.508 39.130 0.00 0.00 31.65 3.41
3429 3633 4.561213 TGACTACATACGACGCAAAATGAG 59.439 41.667 0.00 0.00 0.00 2.90
3430 3634 4.325204 GTGACTACATACGACGCAAAATGA 59.675 41.667 0.00 0.00 0.00 2.57
3431 3635 4.326278 AGTGACTACATACGACGCAAAATG 59.674 41.667 0.00 0.00 0.00 2.32
3432 3636 4.491676 AGTGACTACATACGACGCAAAAT 58.508 39.130 0.00 0.00 0.00 1.82
3433 3637 3.904571 AGTGACTACATACGACGCAAAA 58.095 40.909 0.00 0.00 0.00 2.44
3434 3638 3.564235 AGTGACTACATACGACGCAAA 57.436 42.857 0.00 0.00 0.00 3.68
3435 3639 3.239254 CAAGTGACTACATACGACGCAA 58.761 45.455 0.00 0.00 0.00 4.85
3436 3640 2.227149 ACAAGTGACTACATACGACGCA 59.773 45.455 0.00 0.00 0.00 5.24
3437 3641 2.860062 ACAAGTGACTACATACGACGC 58.140 47.619 0.00 0.00 0.00 5.19
3438 3642 4.469552 TCAACAAGTGACTACATACGACG 58.530 43.478 0.00 0.00 0.00 5.12
3439 3643 6.758593 TTTCAACAAGTGACTACATACGAC 57.241 37.500 0.00 0.00 35.39 4.34
3440 3644 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
3441 3645 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
3442 3646 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
3444 3648 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
3445 3649 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
3446 3650 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
3447 3651 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
3448 3652 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
3449 3653 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
3450 3654 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
3451 3655 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
3452 3656 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
3453 3657 9.050601 ACTTGTCTTTCTAGAGATTTCAACAAG 57.949 33.333 18.42 18.42 32.73 3.16
3454 3658 8.964476 ACTTGTCTTTCTAGAGATTTCAACAA 57.036 30.769 0.00 0.00 0.00 2.83
3464 3668 9.291664 CGTTCCTAAATACTTGTCTTTCTAGAG 57.708 37.037 0.00 0.00 0.00 2.43
3465 3669 8.248945 CCGTTCCTAAATACTTGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
3466 3670 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
3467 3671 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
3468 3672 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
3469 3673 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
3470 3674 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3471 3675 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3472 3676 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
3473 3677 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
3474 3678 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
3475 3679 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
3476 3680 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
3477 3681 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
3478 3682 5.537674 TCATACTCCCTCCGTTCCTAAATAC 59.462 44.000 0.00 0.00 0.00 1.89
3479 3683 5.708544 TCATACTCCCTCCGTTCCTAAATA 58.291 41.667 0.00 0.00 0.00 1.40
3480 3684 4.553678 TCATACTCCCTCCGTTCCTAAAT 58.446 43.478 0.00 0.00 0.00 1.40
3481 3685 3.985127 TCATACTCCCTCCGTTCCTAAA 58.015 45.455 0.00 0.00 0.00 1.85
3482 3686 3.675348 TCATACTCCCTCCGTTCCTAA 57.325 47.619 0.00 0.00 0.00 2.69
3483 3687 3.497332 CATCATACTCCCTCCGTTCCTA 58.503 50.000 0.00 0.00 0.00 2.94
3484 3688 2.320781 CATCATACTCCCTCCGTTCCT 58.679 52.381 0.00 0.00 0.00 3.36
3485 3689 1.270358 GCATCATACTCCCTCCGTTCC 60.270 57.143 0.00 0.00 0.00 3.62
3486 3690 1.412710 TGCATCATACTCCCTCCGTTC 59.587 52.381 0.00 0.00 0.00 3.95
3487 3691 1.496060 TGCATCATACTCCCTCCGTT 58.504 50.000 0.00 0.00 0.00 4.44
3488 3692 1.345741 CATGCATCATACTCCCTCCGT 59.654 52.381 0.00 0.00 0.00 4.69
3489 3693 1.943046 GCATGCATCATACTCCCTCCG 60.943 57.143 14.21 0.00 0.00 4.63
3490 3694 1.350351 AGCATGCATCATACTCCCTCC 59.650 52.381 21.98 0.00 0.00 4.30
3491 3695 2.224475 ACAGCATGCATCATACTCCCTC 60.224 50.000 21.98 0.00 42.53 4.30
3492 3696 1.773052 ACAGCATGCATCATACTCCCT 59.227 47.619 21.98 0.00 42.53 4.20
3493 3697 2.267174 ACAGCATGCATCATACTCCC 57.733 50.000 21.98 0.00 42.53 4.30
3494 3698 4.941325 CATACAGCATGCATCATACTCC 57.059 45.455 21.98 0.00 42.53 3.85
3530 3734 5.422012 TGGCAGTTGTTCTGATCAGACTATA 59.578 40.000 25.07 7.86 46.27 1.31
3531 3735 4.223700 TGGCAGTTGTTCTGATCAGACTAT 59.776 41.667 25.07 7.06 46.27 2.12
3532 3736 3.578282 TGGCAGTTGTTCTGATCAGACTA 59.422 43.478 25.07 13.82 46.27 2.59
3533 3737 2.369860 TGGCAGTTGTTCTGATCAGACT 59.630 45.455 25.07 16.05 46.27 3.24
3535 3739 3.405831 CTTGGCAGTTGTTCTGATCAGA 58.594 45.455 21.67 21.67 46.27 3.27
3536 3740 2.486982 CCTTGGCAGTTGTTCTGATCAG 59.513 50.000 17.07 17.07 46.27 2.90
3537 3741 2.507484 CCTTGGCAGTTGTTCTGATCA 58.493 47.619 0.00 0.00 46.27 2.92
3539 3743 1.202976 AGCCTTGGCAGTTGTTCTGAT 60.203 47.619 14.54 0.00 46.27 2.90
3540 3744 0.183492 AGCCTTGGCAGTTGTTCTGA 59.817 50.000 14.54 0.00 46.27 3.27
3541 3745 1.035139 AAGCCTTGGCAGTTGTTCTG 58.965 50.000 14.54 0.00 46.12 3.02
3542 3746 1.035139 CAAGCCTTGGCAGTTGTTCT 58.965 50.000 14.54 0.00 0.00 3.01
3583 3787 6.649155 TGGATTTAGTCAGATCCAATTCGAA 58.351 36.000 0.00 0.00 46.55 3.71
3607 3811 2.170607 CGAGGGAATGTCCACAATACCT 59.829 50.000 0.00 0.00 38.64 3.08
3618 3822 1.207791 AAGATGCTCCGAGGGAATGT 58.792 50.000 0.00 0.00 0.00 2.71
3619 3823 3.475566 TTAAGATGCTCCGAGGGAATG 57.524 47.619 0.00 0.00 0.00 2.67
3620 3824 3.906846 AGATTAAGATGCTCCGAGGGAAT 59.093 43.478 0.00 0.00 0.00 3.01
3622 3826 2.964209 AGATTAAGATGCTCCGAGGGA 58.036 47.619 0.00 0.00 0.00 4.20
3625 3829 7.492669 TGAAACTTAAGATTAAGATGCTCCGAG 59.507 37.037 17.10 0.00 42.05 4.63
3626 3830 7.327975 TGAAACTTAAGATTAAGATGCTCCGA 58.672 34.615 17.10 0.00 42.05 4.55
3667 3881 3.813443 AGAGTGCGCTGATAATGGAATT 58.187 40.909 3.44 0.00 41.28 2.17
3668 3882 3.482156 AGAGTGCGCTGATAATGGAAT 57.518 42.857 3.44 0.00 0.00 3.01
3669 3883 2.988010 AGAGTGCGCTGATAATGGAA 57.012 45.000 3.44 0.00 0.00 3.53
3670 3884 2.168313 TGAAGAGTGCGCTGATAATGGA 59.832 45.455 3.44 0.00 0.00 3.41
3671 3885 2.554142 TGAAGAGTGCGCTGATAATGG 58.446 47.619 3.44 0.00 0.00 3.16
3672 3886 3.805971 TGATGAAGAGTGCGCTGATAATG 59.194 43.478 3.44 0.00 0.00 1.90
3673 3887 4.063998 TGATGAAGAGTGCGCTGATAAT 57.936 40.909 3.44 0.00 0.00 1.28
3674 3888 3.525268 TGATGAAGAGTGCGCTGATAA 57.475 42.857 3.44 0.00 0.00 1.75
3675 3889 3.525268 TTGATGAAGAGTGCGCTGATA 57.475 42.857 3.44 0.00 0.00 2.15
3676 3890 2.391616 TTGATGAAGAGTGCGCTGAT 57.608 45.000 3.44 0.00 0.00 2.90
3677 3891 2.274437 GATTGATGAAGAGTGCGCTGA 58.726 47.619 3.44 0.00 0.00 4.26
3678 3892 1.329906 GGATTGATGAAGAGTGCGCTG 59.670 52.381 3.44 0.00 0.00 5.18
3679 3893 1.065926 TGGATTGATGAAGAGTGCGCT 60.066 47.619 9.73 0.00 0.00 5.92
3680 3894 1.372582 TGGATTGATGAAGAGTGCGC 58.627 50.000 0.00 0.00 0.00 6.09
3681 3895 3.464907 AGATGGATTGATGAAGAGTGCG 58.535 45.455 0.00 0.00 0.00 5.34
3682 3896 6.541641 ACTTAAGATGGATTGATGAAGAGTGC 59.458 38.462 10.09 0.00 0.00 4.40
3683 3897 8.503458 AACTTAAGATGGATTGATGAAGAGTG 57.497 34.615 10.09 0.00 0.00 3.51
3684 3898 9.171877 GAAACTTAAGATGGATTGATGAAGAGT 57.828 33.333 10.09 0.00 0.00 3.24
3685 3899 8.619546 GGAAACTTAAGATGGATTGATGAAGAG 58.380 37.037 10.09 0.00 0.00 2.85
3686 3900 8.331740 AGGAAACTTAAGATGGATTGATGAAGA 58.668 33.333 10.09 0.00 37.44 2.87
3687 3901 8.404000 CAGGAAACTTAAGATGGATTGATGAAG 58.596 37.037 10.09 0.00 40.21 3.02
3688 3902 7.890127 ACAGGAAACTTAAGATGGATTGATGAA 59.110 33.333 10.09 0.00 40.21 2.57
3689 3903 7.405292 ACAGGAAACTTAAGATGGATTGATGA 58.595 34.615 10.09 0.00 40.21 2.92
3690 3904 7.636150 ACAGGAAACTTAAGATGGATTGATG 57.364 36.000 10.09 0.00 40.21 3.07
3691 3905 8.655935 AAACAGGAAACTTAAGATGGATTGAT 57.344 30.769 10.09 0.00 40.21 2.57
3692 3906 9.753674 ATAAACAGGAAACTTAAGATGGATTGA 57.246 29.630 10.09 0.00 40.21 2.57
3694 3908 8.893727 CGATAAACAGGAAACTTAAGATGGATT 58.106 33.333 10.09 0.00 40.21 3.01
3695 3909 8.265055 TCGATAAACAGGAAACTTAAGATGGAT 58.735 33.333 10.09 0.00 40.21 3.41
3696 3910 7.617225 TCGATAAACAGGAAACTTAAGATGGA 58.383 34.615 10.09 0.00 40.21 3.41
3697 3911 7.843490 TCGATAAACAGGAAACTTAAGATGG 57.157 36.000 10.09 0.00 40.21 3.51
3698 3912 9.151471 TCTTCGATAAACAGGAAACTTAAGATG 57.849 33.333 10.09 2.60 40.21 2.90
3699 3913 9.720769 TTCTTCGATAAACAGGAAACTTAAGAT 57.279 29.630 10.09 0.00 40.21 2.40
3700 3914 9.550406 TTTCTTCGATAAACAGGAAACTTAAGA 57.450 29.630 10.09 0.00 40.21 2.10
3705 3919 9.678941 GAATTTTTCTTCGATAAACAGGAAACT 57.321 29.630 0.00 0.00 46.44 2.66
3706 3920 8.912658 GGAATTTTTCTTCGATAAACAGGAAAC 58.087 33.333 0.00 0.00 0.00 2.78
3707 3921 8.634444 TGGAATTTTTCTTCGATAAACAGGAAA 58.366 29.630 0.00 0.00 0.00 3.13
3708 3922 8.172352 TGGAATTTTTCTTCGATAAACAGGAA 57.828 30.769 0.00 0.00 0.00 3.36
3709 3923 7.753309 TGGAATTTTTCTTCGATAAACAGGA 57.247 32.000 0.00 0.00 0.00 3.86
3710 3924 8.986477 AATGGAATTTTTCTTCGATAAACAGG 57.014 30.769 0.00 0.00 26.74 4.00
3715 3929 9.950680 GCTGATAATGGAATTTTTCTTCGATAA 57.049 29.630 0.00 0.00 37.87 1.75
3716 3930 8.282592 CGCTGATAATGGAATTTTTCTTCGATA 58.717 33.333 0.00 0.00 37.87 2.92
3717 3931 7.134815 CGCTGATAATGGAATTTTTCTTCGAT 58.865 34.615 0.00 0.00 37.87 3.59
3718 3932 6.486248 CGCTGATAATGGAATTTTTCTTCGA 58.514 36.000 0.00 0.00 37.87 3.71
3719 3933 5.172053 GCGCTGATAATGGAATTTTTCTTCG 59.828 40.000 0.00 0.00 37.87 3.79
3720 3934 6.020360 GTGCGCTGATAATGGAATTTTTCTTC 60.020 38.462 9.73 0.00 37.87 2.87
3721 3935 5.807011 GTGCGCTGATAATGGAATTTTTCTT 59.193 36.000 9.73 0.00 37.87 2.52
3722 3936 5.126061 AGTGCGCTGATAATGGAATTTTTCT 59.874 36.000 9.73 0.00 37.87 2.52
3723 3937 5.343249 AGTGCGCTGATAATGGAATTTTTC 58.657 37.500 9.73 0.00 37.87 2.29
3724 3938 5.126061 AGAGTGCGCTGATAATGGAATTTTT 59.874 36.000 3.44 0.00 37.87 1.94
3725 3939 4.641989 AGAGTGCGCTGATAATGGAATTTT 59.358 37.500 3.44 0.00 37.87 1.82
3726 3940 4.202441 AGAGTGCGCTGATAATGGAATTT 58.798 39.130 3.44 0.00 37.87 1.82
3742 3956 4.070716 CCATAGGGATTGATGAAGAGTGC 58.929 47.826 0.00 0.00 35.59 4.40
3770 3984 1.333258 GCGAATTCCGTGATTGCTAGC 60.333 52.381 8.10 8.10 41.15 3.42
3781 3995 4.495422 ACCTTATAGCATAGCGAATTCCG 58.505 43.478 0.00 0.00 42.21 4.30
3851 4065 9.147554 AGGGACTAAGAAGGGAAACGAAAGTAG 62.148 44.444 0.00 0.00 40.83 2.57
3852 4066 7.430102 AGGGACTAAGAAGGGAAACGAAAGTA 61.430 42.308 0.00 0.00 40.83 2.24
3853 4067 6.693725 AGGGACTAAGAAGGGAAACGAAAGT 61.694 44.000 0.00 0.00 43.93 2.66
3854 4068 4.001652 GGGACTAAGAAGGGAAACGAAAG 58.998 47.826 0.00 0.00 0.00 2.62
3855 4069 3.649502 AGGGACTAAGAAGGGAAACGAAA 59.350 43.478 0.00 0.00 36.02 3.46
3856 4070 3.245441 AGGGACTAAGAAGGGAAACGAA 58.755 45.455 0.00 0.00 36.02 3.85
3857 4071 2.898662 AGGGACTAAGAAGGGAAACGA 58.101 47.619 0.00 0.00 36.02 3.85
3871 4085 7.182017 AGGGAATCTAAAGTAGATAGGGACT 57.818 40.000 0.00 0.00 44.44 3.85
3887 4101 4.593956 CAAAGCCAGTAAGAAGGGAATCT 58.406 43.478 0.00 0.00 0.00 2.40
3912 4126 8.993121 GGAAGTGTCGAATCAATATGATGTATT 58.007 33.333 0.00 0.00 37.15 1.89
3913 4127 8.370940 AGGAAGTGTCGAATCAATATGATGTAT 58.629 33.333 0.00 0.00 37.15 2.29
3929 4184 2.673833 AGAAAGCGTAAGGAAGTGTCG 58.326 47.619 0.00 0.00 38.28 4.35
3964 4219 5.046591 ACATGAATACTCTCCGTTTTCCTGA 60.047 40.000 0.00 0.00 34.92 3.86
3970 4225 5.003804 AGCAAACATGAATACTCTCCGTTT 58.996 37.500 0.00 0.00 0.00 3.60
3975 4230 5.122869 TGAAGCAGCAAACATGAATACTCTC 59.877 40.000 0.00 0.00 0.00 3.20
3976 4231 5.005740 TGAAGCAGCAAACATGAATACTCT 58.994 37.500 0.00 0.00 0.00 3.24
3985 4240 2.889045 ACTCACATGAAGCAGCAAACAT 59.111 40.909 0.00 0.00 0.00 2.71
3991 4246 0.109873 GTGCACTCACATGAAGCAGC 60.110 55.000 10.32 5.46 42.66 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.