Multiple sequence alignment - TraesCS5B01G420300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G420300 chr5B 100.000 3601 0 0 1 3601 595664682 595661082 0.000000e+00 6650.0
1 TraesCS5B01G420300 chr5B 82.195 483 45 23 485 931 75544329 75543852 9.440000e-101 377.0
2 TraesCS5B01G420300 chr5D 91.737 1549 93 19 276 1795 484580008 484578466 0.000000e+00 2119.0
3 TraesCS5B01G420300 chr5D 86.800 1500 116 29 2157 3601 484578475 484577003 0.000000e+00 1598.0
4 TraesCS5B01G420300 chr5D 92.000 50 4 0 143 192 484580116 484580067 1.790000e-08 71.3
5 TraesCS5B01G420300 chr5A 91.978 1097 69 13 714 1798 606164033 606162944 0.000000e+00 1520.0
6 TraesCS5B01G420300 chr5A 85.086 1455 128 36 2157 3583 606162957 606161564 0.000000e+00 1402.0
7 TraesCS5B01G420300 chr5A 79.825 798 77 30 15 758 606164834 606164067 4.150000e-139 505.0
8 TraesCS5B01G420300 chr4B 84.615 65 10 0 1826 1890 166562138 166562202 8.350000e-07 65.8
9 TraesCS5B01G420300 chr3B 100.000 28 0 0 2088 2115 117710566 117710539 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G420300 chr5B 595661082 595664682 3600 True 6650.000000 6650 100.000000 1 3601 1 chr5B.!!$R2 3600
1 TraesCS5B01G420300 chr5D 484577003 484580116 3113 True 1262.766667 2119 90.179000 143 3601 3 chr5D.!!$R1 3458
2 TraesCS5B01G420300 chr5A 606161564 606164834 3270 True 1142.333333 1520 85.629667 15 3583 3 chr5A.!!$R1 3568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 128 0.107459 GGAATCTGAGCCGCTTTCCT 60.107 55.0 12.53 0.0 34.36 3.36 F
737 877 0.178950 ACCAGTCAGCCTGAGAGTCA 60.179 55.0 0.00 0.0 44.49 3.41 F
1915 2080 0.114364 TGGTCTGCCCAGTGTCTCTA 59.886 55.0 0.00 0.0 38.72 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1143 1301 0.179073 CTGGATCGAAACGGCCAGAT 60.179 55.0 20.18 0.0 45.31 2.90 R
2414 2591 0.032615 TTCCAGGCAAAACCAGGTGT 60.033 50.0 0.00 0.0 45.46 4.16 R
3250 3467 0.676151 CTGGCTCCTTGGCTGTTCTC 60.676 60.0 0.00 0.0 42.34 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 2.633509 GCTGCTGGAGCCCAAGTTG 61.634 63.158 10.34 0.00 42.54 3.16
91 92 1.538849 GCTGGAGCCCAAGTTGTTTTG 60.539 52.381 1.45 0.00 30.80 2.44
96 97 1.159713 GCCCAAGTTGTTTTGCTGCC 61.160 55.000 1.45 0.00 0.00 4.85
121 126 0.729690 GTGGAATCTGAGCCGCTTTC 59.270 55.000 0.00 0.00 0.00 2.62
123 128 0.107459 GGAATCTGAGCCGCTTTCCT 60.107 55.000 12.53 0.00 34.36 3.36
126 131 0.393537 ATCTGAGCCGCTTTCCTTGG 60.394 55.000 0.00 0.00 0.00 3.61
129 134 0.398696 TGAGCCGCTTTCCTTGGTTA 59.601 50.000 0.00 0.00 0.00 2.85
200 213 7.010339 AGCTAGGTAGATTTGTGAGTTCTTT 57.990 36.000 0.00 0.00 0.00 2.52
201 214 8.135382 AGCTAGGTAGATTTGTGAGTTCTTTA 57.865 34.615 0.00 0.00 0.00 1.85
249 266 1.698506 TGGTTTGCCTGGGTAGTTTG 58.301 50.000 0.00 0.00 35.27 2.93
319 339 6.753913 AGATGGGTTCTGAATATGCTTCTA 57.246 37.500 0.00 0.00 31.79 2.10
323 343 5.532406 TGGGTTCTGAATATGCTTCTATTGC 59.468 40.000 0.00 0.00 0.00 3.56
330 350 5.700832 TGAATATGCTTCTATTGCGGGTAAG 59.299 40.000 0.00 0.00 0.00 2.34
331 351 3.838244 ATGCTTCTATTGCGGGTAAGA 57.162 42.857 0.00 0.00 0.00 2.10
342 362 3.096852 TGCGGGTAAGAAGAAGAGATGA 58.903 45.455 0.00 0.00 0.00 2.92
356 376 0.539051 AGATGAACGGCCTTCTCTGG 59.461 55.000 0.00 0.00 0.00 3.86
388 409 2.358247 TTCCCTCGGTTGCTTCGC 60.358 61.111 0.00 0.00 0.00 4.70
393 414 1.425428 CTCGGTTGCTTCGCCAATC 59.575 57.895 0.00 0.00 0.00 2.67
594 646 7.334421 AGTGTTTGTCAAGTCATATATTTCGCT 59.666 33.333 0.00 0.00 0.00 4.93
597 649 6.603237 TGTCAAGTCATATATTTCGCTTGG 57.397 37.500 0.00 0.00 35.43 3.61
605 657 2.051334 TATTTCGCTTGGATGGGGTG 57.949 50.000 0.00 0.00 0.00 4.61
607 659 2.424842 TTTCGCTTGGATGGGGTGCT 62.425 55.000 0.00 0.00 0.00 4.40
672 730 2.027385 GAATGATGAAAGGCTGGTCCC 58.973 52.381 0.00 0.00 34.51 4.46
683 741 1.396653 GCTGGTCCCTGAATGAATGG 58.603 55.000 0.00 0.00 0.00 3.16
702 760 8.121305 TGAATGGCTATTGATTGTTAAACAGT 57.879 30.769 0.00 0.00 0.00 3.55
708 766 7.148086 GGCTATTGATTGTTAAACAGTCATCCA 60.148 37.037 0.00 0.00 42.97 3.41
737 877 0.178950 ACCAGTCAGCCTGAGAGTCA 60.179 55.000 0.00 0.00 44.49 3.41
853 1000 6.715347 AGTGATTGGCCCAATTTCTTATAC 57.285 37.500 10.97 0.00 33.90 1.47
902 1049 2.568623 TTTTCTGTCCTGCTTCCCTC 57.431 50.000 0.00 0.00 0.00 4.30
927 1075 1.486310 TGCTCTTGTCAGTTGGTCTGT 59.514 47.619 0.00 0.00 43.97 3.41
937 1085 5.483937 TGTCAGTTGGTCTGTCCTATACATT 59.516 40.000 0.00 0.00 43.97 2.71
980 1138 2.700897 ACATACCATCCTACTCCACAGC 59.299 50.000 0.00 0.00 0.00 4.40
1026 1184 0.674895 AACATTCTGAGAGCACGGCC 60.675 55.000 0.00 0.00 0.00 6.13
1029 1187 2.290122 ATTCTGAGAGCACGGCCGAG 62.290 60.000 35.90 27.15 0.00 4.63
1092 1250 1.876156 CCCAAGCAGAAGTCTGACAAC 59.124 52.381 12.54 3.51 46.59 3.32
1209 1367 1.410004 TGTTTGGTCGTCAGAGGTCT 58.590 50.000 0.00 0.00 0.00 3.85
1230 1388 0.856982 TCCATGGAGTTTTGGGTGGT 59.143 50.000 11.44 0.00 33.62 4.16
1255 1418 5.232414 GGAAAGTGTACGTTATCTGCTCATC 59.768 44.000 0.00 0.00 0.00 2.92
1258 1421 3.487574 GTGTACGTTATCTGCTCATCTGC 59.512 47.826 0.00 0.00 0.00 4.26
1277 1440 7.328737 TCATCTGCTTACTTACGTTTTCTTCTC 59.671 37.037 0.00 0.00 0.00 2.87
1278 1441 5.924825 TCTGCTTACTTACGTTTTCTTCTCC 59.075 40.000 0.00 0.00 0.00 3.71
1286 1449 1.740025 CGTTTTCTTCTCCTGGGCATC 59.260 52.381 0.00 0.00 0.00 3.91
1304 1468 4.483311 GCATCTCTGAGGCTTTTCTTTTG 58.517 43.478 4.59 0.00 36.37 2.44
1369 1533 3.662759 TCTTCCAGTGTTTTGGGTCTT 57.337 42.857 0.00 0.00 38.81 3.01
1387 1551 2.012673 CTTGCAACAGCTATCTGGGTC 58.987 52.381 0.00 0.00 44.54 4.46
1393 1557 4.583871 CAACAGCTATCTGGGTCTTCTTT 58.416 43.478 0.00 0.00 44.54 2.52
1477 1641 5.234752 GTTCAGTTTGTTTGGTCCAACTTT 58.765 37.500 2.98 0.00 0.00 2.66
1746 1910 7.381408 GCTTTACTGTGTTCTTTTTGTATTCCC 59.619 37.037 0.00 0.00 0.00 3.97
1797 1962 9.140286 GGAAAATATAAAGAAAACCAGTTCTGC 57.860 33.333 0.00 0.00 37.90 4.26
1798 1963 9.140286 GAAAATATAAAGAAAACCAGTTCTGCC 57.860 33.333 0.00 0.00 37.90 4.85
1799 1964 8.422577 AAATATAAAGAAAACCAGTTCTGCCT 57.577 30.769 0.00 0.00 37.90 4.75
1800 1965 9.528489 AAATATAAAGAAAACCAGTTCTGCCTA 57.472 29.630 0.00 0.00 37.90 3.93
1801 1966 9.528489 AATATAAAGAAAACCAGTTCTGCCTAA 57.472 29.630 0.00 0.00 37.90 2.69
1802 1967 5.515797 AAAGAAAACCAGTTCTGCCTAAC 57.484 39.130 0.00 0.00 37.90 2.34
1803 1968 4.164843 AGAAAACCAGTTCTGCCTAACA 57.835 40.909 1.65 0.00 36.48 2.41
1804 1969 4.532834 AGAAAACCAGTTCTGCCTAACAA 58.467 39.130 1.65 0.00 36.48 2.83
1805 1970 5.140454 AGAAAACCAGTTCTGCCTAACAAT 58.860 37.500 1.65 0.00 36.48 2.71
1806 1971 4.853924 AAACCAGTTCTGCCTAACAATG 57.146 40.909 1.65 0.00 0.00 2.82
1807 1972 2.162681 ACCAGTTCTGCCTAACAATGC 58.837 47.619 1.65 0.00 0.00 3.56
1808 1973 2.224867 ACCAGTTCTGCCTAACAATGCT 60.225 45.455 1.65 0.00 0.00 3.79
1809 1974 2.421424 CCAGTTCTGCCTAACAATGCTC 59.579 50.000 1.65 0.00 0.00 4.26
1810 1975 3.076621 CAGTTCTGCCTAACAATGCTCA 58.923 45.455 1.65 0.00 0.00 4.26
1811 1976 3.693085 CAGTTCTGCCTAACAATGCTCAT 59.307 43.478 1.65 0.00 0.00 2.90
1812 1977 4.157289 CAGTTCTGCCTAACAATGCTCATT 59.843 41.667 1.65 0.00 0.00 2.57
1813 1978 4.397417 AGTTCTGCCTAACAATGCTCATTC 59.603 41.667 1.65 0.00 0.00 2.67
1814 1979 4.226427 TCTGCCTAACAATGCTCATTCT 57.774 40.909 0.00 0.00 0.00 2.40
1815 1980 3.943381 TCTGCCTAACAATGCTCATTCTG 59.057 43.478 0.00 0.00 0.00 3.02
1816 1981 2.424601 TGCCTAACAATGCTCATTCTGC 59.575 45.455 0.00 0.00 0.00 4.26
1817 1982 2.223665 GCCTAACAATGCTCATTCTGCC 60.224 50.000 0.00 0.00 0.00 4.85
1818 1983 3.285484 CCTAACAATGCTCATTCTGCCT 58.715 45.455 0.00 0.00 0.00 4.75
1819 1984 4.454678 CCTAACAATGCTCATTCTGCCTA 58.545 43.478 0.00 0.00 0.00 3.93
1820 1985 4.883585 CCTAACAATGCTCATTCTGCCTAA 59.116 41.667 0.00 0.00 0.00 2.69
1821 1986 4.708726 AACAATGCTCATTCTGCCTAAC 57.291 40.909 0.00 0.00 0.00 2.34
1822 1987 3.960571 ACAATGCTCATTCTGCCTAACT 58.039 40.909 0.00 0.00 0.00 2.24
1823 1988 3.693085 ACAATGCTCATTCTGCCTAACTG 59.307 43.478 0.00 0.00 0.00 3.16
1824 1989 3.641434 ATGCTCATTCTGCCTAACTGT 57.359 42.857 0.00 0.00 0.00 3.55
1825 1990 3.423539 TGCTCATTCTGCCTAACTGTT 57.576 42.857 0.00 0.00 0.00 3.16
1826 1991 3.754965 TGCTCATTCTGCCTAACTGTTT 58.245 40.909 0.00 0.00 0.00 2.83
1827 1992 4.144297 TGCTCATTCTGCCTAACTGTTTT 58.856 39.130 0.00 0.00 0.00 2.43
1828 1993 4.022935 TGCTCATTCTGCCTAACTGTTTTG 60.023 41.667 0.00 0.00 0.00 2.44
1829 1994 4.479619 CTCATTCTGCCTAACTGTTTTGC 58.520 43.478 0.00 2.70 0.00 3.68
1830 1995 3.255642 TCATTCTGCCTAACTGTTTTGCC 59.744 43.478 0.00 0.00 0.00 4.52
1831 1996 1.616159 TCTGCCTAACTGTTTTGCCC 58.384 50.000 0.00 0.00 0.00 5.36
1832 1997 1.144913 TCTGCCTAACTGTTTTGCCCT 59.855 47.619 0.00 0.00 0.00 5.19
1833 1998 1.963515 CTGCCTAACTGTTTTGCCCTT 59.036 47.619 0.00 0.00 0.00 3.95
1834 1999 1.686052 TGCCTAACTGTTTTGCCCTTG 59.314 47.619 0.00 0.00 0.00 3.61
1835 2000 1.960689 GCCTAACTGTTTTGCCCTTGA 59.039 47.619 0.00 0.00 0.00 3.02
1836 2001 2.562738 GCCTAACTGTTTTGCCCTTGAT 59.437 45.455 0.00 0.00 0.00 2.57
1837 2002 3.761752 GCCTAACTGTTTTGCCCTTGATA 59.238 43.478 0.00 0.00 0.00 2.15
1838 2003 4.402474 GCCTAACTGTTTTGCCCTTGATAT 59.598 41.667 0.00 0.00 0.00 1.63
1839 2004 5.450550 GCCTAACTGTTTTGCCCTTGATATC 60.451 44.000 0.00 0.00 0.00 1.63
1840 2005 5.652014 CCTAACTGTTTTGCCCTTGATATCA 59.348 40.000 0.00 0.00 0.00 2.15
1841 2006 6.322201 CCTAACTGTTTTGCCCTTGATATCAT 59.678 38.462 6.17 0.00 0.00 2.45
1842 2007 5.841957 ACTGTTTTGCCCTTGATATCATC 57.158 39.130 6.17 0.00 0.00 2.92
1843 2008 5.263599 ACTGTTTTGCCCTTGATATCATCA 58.736 37.500 6.17 0.22 37.55 3.07
1844 2009 5.895534 ACTGTTTTGCCCTTGATATCATCAT 59.104 36.000 6.17 0.00 39.39 2.45
1845 2010 6.040166 ACTGTTTTGCCCTTGATATCATCATC 59.960 38.462 6.17 0.00 39.39 2.92
1846 2011 5.892686 TGTTTTGCCCTTGATATCATCATCA 59.107 36.000 6.17 0.57 39.39 3.07
1847 2012 6.551975 TGTTTTGCCCTTGATATCATCATCAT 59.448 34.615 6.17 0.00 39.39 2.45
1848 2013 6.584185 TTTGCCCTTGATATCATCATCATG 57.416 37.500 6.17 0.00 39.39 3.07
1849 2014 4.595986 TGCCCTTGATATCATCATCATGG 58.404 43.478 6.17 9.81 44.29 3.66
1850 2015 3.380637 GCCCTTGATATCATCATCATGGC 59.619 47.826 6.17 5.63 43.76 4.40
1851 2016 4.856509 CCCTTGATATCATCATCATGGCT 58.143 43.478 6.17 0.00 43.76 4.75
1852 2017 5.262009 CCCTTGATATCATCATCATGGCTT 58.738 41.667 6.17 0.00 43.76 4.35
1853 2018 5.125578 CCCTTGATATCATCATCATGGCTTG 59.874 44.000 6.17 0.00 43.76 4.01
1854 2019 5.393135 CCTTGATATCATCATCATGGCTTGC 60.393 44.000 6.17 0.00 40.99 4.01
1855 2020 4.918588 TGATATCATCATCATGGCTTGCT 58.081 39.130 0.00 0.00 33.59 3.91
1856 2021 4.700213 TGATATCATCATCATGGCTTGCTG 59.300 41.667 0.00 0.00 33.59 4.41
1857 2022 1.687563 TCATCATCATGGCTTGCTGG 58.312 50.000 4.66 0.00 0.00 4.85
1858 2023 1.213430 TCATCATCATGGCTTGCTGGA 59.787 47.619 4.66 0.00 0.00 3.86
1859 2024 2.028876 CATCATCATGGCTTGCTGGAA 58.971 47.619 4.66 0.00 0.00 3.53
1860 2025 2.447408 TCATCATGGCTTGCTGGAAT 57.553 45.000 4.66 0.00 0.00 3.01
1861 2026 3.581265 TCATCATGGCTTGCTGGAATA 57.419 42.857 4.66 0.00 0.00 1.75
1862 2027 4.108501 TCATCATGGCTTGCTGGAATAT 57.891 40.909 4.66 0.00 0.00 1.28
1863 2028 4.077108 TCATCATGGCTTGCTGGAATATC 58.923 43.478 4.66 0.00 0.00 1.63
1864 2029 3.870538 TCATGGCTTGCTGGAATATCT 57.129 42.857 0.00 0.00 0.00 1.98
1865 2030 3.483421 TCATGGCTTGCTGGAATATCTG 58.517 45.455 0.00 0.00 0.00 2.90
1866 2031 2.353357 TGGCTTGCTGGAATATCTGG 57.647 50.000 0.00 0.00 0.00 3.86
1867 2032 1.845791 TGGCTTGCTGGAATATCTGGA 59.154 47.619 0.00 0.00 0.00 3.86
1868 2033 2.444388 TGGCTTGCTGGAATATCTGGAT 59.556 45.455 0.00 0.00 0.00 3.41
1869 2034 3.117398 TGGCTTGCTGGAATATCTGGATT 60.117 43.478 0.00 0.00 0.00 3.01
1870 2035 3.505293 GGCTTGCTGGAATATCTGGATTC 59.495 47.826 0.00 0.00 35.45 2.52
1871 2036 4.139786 GCTTGCTGGAATATCTGGATTCA 58.860 43.478 0.00 0.00 37.53 2.57
1872 2037 4.215827 GCTTGCTGGAATATCTGGATTCAG 59.784 45.833 0.00 0.00 42.21 3.02
1904 2069 6.866010 AAAAATCTTCAAAAATGGTCTGCC 57.134 33.333 0.00 0.00 0.00 4.85
1905 2070 4.541973 AATCTTCAAAAATGGTCTGCCC 57.458 40.909 0.00 0.00 0.00 5.36
1913 2078 3.471620 TGGTCTGCCCAGTGTCTC 58.528 61.111 0.00 0.00 38.72 3.36
1914 2079 1.152247 TGGTCTGCCCAGTGTCTCT 60.152 57.895 0.00 0.00 38.72 3.10
1915 2080 0.114364 TGGTCTGCCCAGTGTCTCTA 59.886 55.000 0.00 0.00 38.72 2.43
1916 2081 1.273267 TGGTCTGCCCAGTGTCTCTAT 60.273 52.381 0.00 0.00 38.72 1.98
1917 2082 1.834263 GGTCTGCCCAGTGTCTCTATT 59.166 52.381 0.00 0.00 0.00 1.73
1918 2083 2.237392 GGTCTGCCCAGTGTCTCTATTT 59.763 50.000 0.00 0.00 0.00 1.40
1919 2084 3.265791 GTCTGCCCAGTGTCTCTATTTG 58.734 50.000 0.00 0.00 0.00 2.32
1920 2085 2.237143 TCTGCCCAGTGTCTCTATTTGG 59.763 50.000 0.00 0.00 0.00 3.28
1921 2086 2.237143 CTGCCCAGTGTCTCTATTTGGA 59.763 50.000 0.00 0.00 0.00 3.53
1922 2087 2.237143 TGCCCAGTGTCTCTATTTGGAG 59.763 50.000 0.00 0.00 34.88 3.86
1923 2088 2.420687 GCCCAGTGTCTCTATTTGGAGG 60.421 54.545 0.00 0.00 34.39 4.30
1924 2089 2.420687 CCCAGTGTCTCTATTTGGAGGC 60.421 54.545 0.00 0.00 38.32 4.70
1925 2090 2.237143 CCAGTGTCTCTATTTGGAGGCA 59.763 50.000 0.00 0.00 44.35 4.75
1929 2094 3.942829 TGTCTCTATTTGGAGGCACTTG 58.057 45.455 0.00 0.00 42.13 3.16
1930 2095 2.680339 GTCTCTATTTGGAGGCACTTGC 59.320 50.000 0.00 0.00 41.55 4.01
1931 2096 2.573462 TCTCTATTTGGAGGCACTTGCT 59.427 45.455 0.38 0.00 41.55 3.91
1932 2097 3.009473 TCTCTATTTGGAGGCACTTGCTT 59.991 43.478 0.38 0.00 41.55 3.91
1933 2098 4.225042 TCTCTATTTGGAGGCACTTGCTTA 59.775 41.667 0.38 0.00 41.55 3.09
1934 2099 4.917385 TCTATTTGGAGGCACTTGCTTAA 58.083 39.130 0.38 0.00 41.55 1.85
1935 2100 4.943705 TCTATTTGGAGGCACTTGCTTAAG 59.056 41.667 0.00 0.00 41.55 1.85
1936 2101 2.949177 TTGGAGGCACTTGCTTAAGA 57.051 45.000 6.67 0.00 41.55 2.10
1937 2102 2.949177 TGGAGGCACTTGCTTAAGAA 57.051 45.000 6.67 0.00 41.55 2.52
1938 2103 2.504367 TGGAGGCACTTGCTTAAGAAC 58.496 47.619 6.67 0.00 41.55 3.01
1939 2104 2.106511 TGGAGGCACTTGCTTAAGAACT 59.893 45.455 6.67 0.00 41.55 3.01
1940 2105 3.326588 TGGAGGCACTTGCTTAAGAACTA 59.673 43.478 6.67 0.00 41.55 2.24
1941 2106 4.019321 TGGAGGCACTTGCTTAAGAACTAT 60.019 41.667 6.67 0.00 41.55 2.12
1942 2107 4.572795 GGAGGCACTTGCTTAAGAACTATC 59.427 45.833 6.67 0.00 41.55 2.08
1943 2108 5.423886 GAGGCACTTGCTTAAGAACTATCT 58.576 41.667 6.67 0.00 41.55 1.98
1944 2109 5.181748 AGGCACTTGCTTAAGAACTATCTG 58.818 41.667 6.67 0.00 41.70 2.90
1945 2110 4.201861 GGCACTTGCTTAAGAACTATCTGC 60.202 45.833 6.67 2.90 41.70 4.26
1946 2111 4.633565 GCACTTGCTTAAGAACTATCTGCT 59.366 41.667 6.67 0.00 35.37 4.24
1947 2112 5.123027 GCACTTGCTTAAGAACTATCTGCTT 59.877 40.000 6.67 0.00 35.37 3.91
1948 2113 6.674278 GCACTTGCTTAAGAACTATCTGCTTC 60.674 42.308 6.67 0.00 35.37 3.86
1949 2114 6.593382 CACTTGCTTAAGAACTATCTGCTTCT 59.407 38.462 6.67 0.00 35.59 2.85
1950 2115 6.816140 ACTTGCTTAAGAACTATCTGCTTCTC 59.184 38.462 6.67 0.00 35.59 2.87
1951 2116 6.286240 TGCTTAAGAACTATCTGCTTCTCA 57.714 37.500 6.67 0.00 35.59 3.27
1952 2117 6.882656 TGCTTAAGAACTATCTGCTTCTCAT 58.117 36.000 6.67 0.00 35.59 2.90
1953 2118 8.011844 TGCTTAAGAACTATCTGCTTCTCATA 57.988 34.615 6.67 0.00 35.59 2.15
1954 2119 8.646004 TGCTTAAGAACTATCTGCTTCTCATAT 58.354 33.333 6.67 0.00 35.59 1.78
1955 2120 9.139174 GCTTAAGAACTATCTGCTTCTCATATC 57.861 37.037 6.67 0.00 35.59 1.63
1957 2122 9.973450 TTAAGAACTATCTGCTTCTCATATCAC 57.027 33.333 0.00 0.00 35.59 3.06
1958 2123 7.594351 AGAACTATCTGCTTCTCATATCACA 57.406 36.000 0.00 0.00 33.59 3.58
1959 2124 7.432869 AGAACTATCTGCTTCTCATATCACAC 58.567 38.462 0.00 0.00 33.59 3.82
1960 2125 6.721704 ACTATCTGCTTCTCATATCACACA 57.278 37.500 0.00 0.00 0.00 3.72
1961 2126 7.300556 ACTATCTGCTTCTCATATCACACAT 57.699 36.000 0.00 0.00 0.00 3.21
1962 2127 8.414629 ACTATCTGCTTCTCATATCACACATA 57.585 34.615 0.00 0.00 0.00 2.29
1963 2128 8.864087 ACTATCTGCTTCTCATATCACACATAA 58.136 33.333 0.00 0.00 0.00 1.90
1964 2129 9.872721 CTATCTGCTTCTCATATCACACATAAT 57.127 33.333 0.00 0.00 0.00 1.28
1965 2130 8.774890 ATCTGCTTCTCATATCACACATAATC 57.225 34.615 0.00 0.00 0.00 1.75
1966 2131 7.729116 TCTGCTTCTCATATCACACATAATCA 58.271 34.615 0.00 0.00 0.00 2.57
1967 2132 8.206189 TCTGCTTCTCATATCACACATAATCAA 58.794 33.333 0.00 0.00 0.00 2.57
1968 2133 8.735692 TGCTTCTCATATCACACATAATCAAA 57.264 30.769 0.00 0.00 0.00 2.69
1969 2134 9.176460 TGCTTCTCATATCACACATAATCAAAA 57.824 29.630 0.00 0.00 0.00 2.44
1970 2135 9.661187 GCTTCTCATATCACACATAATCAAAAG 57.339 33.333 0.00 0.00 0.00 2.27
1971 2136 9.661187 CTTCTCATATCACACATAATCAAAAGC 57.339 33.333 0.00 0.00 0.00 3.51
1972 2137 8.735692 TCTCATATCACACATAATCAAAAGCA 57.264 30.769 0.00 0.00 0.00 3.91
1973 2138 9.176460 TCTCATATCACACATAATCAAAAGCAA 57.824 29.630 0.00 0.00 0.00 3.91
1974 2139 9.447040 CTCATATCACACATAATCAAAAGCAAG 57.553 33.333 0.00 0.00 0.00 4.01
1975 2140 7.916977 TCATATCACACATAATCAAAAGCAAGC 59.083 33.333 0.00 0.00 0.00 4.01
1976 2141 5.450592 TCACACATAATCAAAAGCAAGCA 57.549 34.783 0.00 0.00 0.00 3.91
1977 2142 6.028146 TCACACATAATCAAAAGCAAGCAT 57.972 33.333 0.00 0.00 0.00 3.79
1978 2143 7.155655 TCACACATAATCAAAAGCAAGCATA 57.844 32.000 0.00 0.00 0.00 3.14
1979 2144 7.774134 TCACACATAATCAAAAGCAAGCATAT 58.226 30.769 0.00 0.00 0.00 1.78
1980 2145 7.916977 TCACACATAATCAAAAGCAAGCATATC 59.083 33.333 0.00 0.00 0.00 1.63
1981 2146 7.703197 CACACATAATCAAAAGCAAGCATATCA 59.297 33.333 0.00 0.00 0.00 2.15
1982 2147 7.919091 ACACATAATCAAAAGCAAGCATATCAG 59.081 33.333 0.00 0.00 0.00 2.90
1983 2148 8.132995 CACATAATCAAAAGCAAGCATATCAGA 58.867 33.333 0.00 0.00 0.00 3.27
1984 2149 8.350722 ACATAATCAAAAGCAAGCATATCAGAG 58.649 33.333 0.00 0.00 0.00 3.35
1985 2150 6.770746 AATCAAAAGCAAGCATATCAGAGT 57.229 33.333 0.00 0.00 0.00 3.24
1986 2151 6.770746 ATCAAAAGCAAGCATATCAGAGTT 57.229 33.333 0.00 0.00 0.00 3.01
1987 2152 6.187125 TCAAAAGCAAGCATATCAGAGTTC 57.813 37.500 0.00 0.00 0.00 3.01
1988 2153 5.706833 TCAAAAGCAAGCATATCAGAGTTCA 59.293 36.000 0.00 0.00 0.00 3.18
1989 2154 5.814764 AAAGCAAGCATATCAGAGTTCAG 57.185 39.130 0.00 0.00 0.00 3.02
1990 2155 3.806380 AGCAAGCATATCAGAGTTCAGG 58.194 45.455 0.00 0.00 0.00 3.86
1991 2156 3.453717 AGCAAGCATATCAGAGTTCAGGA 59.546 43.478 0.00 0.00 0.00 3.86
1992 2157 4.080695 AGCAAGCATATCAGAGTTCAGGAA 60.081 41.667 0.00 0.00 0.00 3.36
1993 2158 4.820716 GCAAGCATATCAGAGTTCAGGAAT 59.179 41.667 0.00 0.00 0.00 3.01
1994 2159 5.298777 GCAAGCATATCAGAGTTCAGGAATT 59.701 40.000 0.00 0.00 0.00 2.17
1995 2160 6.726230 CAAGCATATCAGAGTTCAGGAATTG 58.274 40.000 0.00 0.00 0.00 2.32
1996 2161 5.374921 AGCATATCAGAGTTCAGGAATTGG 58.625 41.667 0.00 0.00 0.00 3.16
1997 2162 5.131642 AGCATATCAGAGTTCAGGAATTGGA 59.868 40.000 0.00 0.00 0.00 3.53
1998 2163 6.002704 GCATATCAGAGTTCAGGAATTGGAT 58.997 40.000 0.00 0.00 0.00 3.41
1999 2164 6.489361 GCATATCAGAGTTCAGGAATTGGATT 59.511 38.462 0.00 0.00 0.00 3.01
2000 2165 7.521748 GCATATCAGAGTTCAGGAATTGGATTG 60.522 40.741 0.00 0.00 0.00 2.67
2001 2166 5.503634 TCAGAGTTCAGGAATTGGATTGA 57.496 39.130 0.00 0.00 0.00 2.57
2002 2167 6.070951 TCAGAGTTCAGGAATTGGATTGAT 57.929 37.500 0.00 0.00 0.00 2.57
2003 2168 6.118170 TCAGAGTTCAGGAATTGGATTGATC 58.882 40.000 0.00 0.00 0.00 2.92
2004 2169 6.069789 TCAGAGTTCAGGAATTGGATTGATCT 60.070 38.462 0.00 0.00 0.00 2.75
2005 2170 6.602406 CAGAGTTCAGGAATTGGATTGATCTT 59.398 38.462 0.00 0.00 0.00 2.40
2006 2171 6.827762 AGAGTTCAGGAATTGGATTGATCTTC 59.172 38.462 0.00 0.00 0.00 2.87
2007 2172 6.487828 AGTTCAGGAATTGGATTGATCTTCA 58.512 36.000 0.00 0.00 0.00 3.02
2008 2173 7.124052 AGTTCAGGAATTGGATTGATCTTCAT 58.876 34.615 0.00 0.00 0.00 2.57
2009 2174 7.284944 AGTTCAGGAATTGGATTGATCTTCATC 59.715 37.037 0.00 0.00 0.00 2.92
2010 2175 6.907961 TCAGGAATTGGATTGATCTTCATCT 58.092 36.000 0.00 0.00 0.00 2.90
2011 2176 6.996879 TCAGGAATTGGATTGATCTTCATCTC 59.003 38.462 0.00 0.00 0.00 2.75
2012 2177 6.999272 CAGGAATTGGATTGATCTTCATCTCT 59.001 38.462 0.00 0.00 0.00 3.10
2013 2178 6.999272 AGGAATTGGATTGATCTTCATCTCTG 59.001 38.462 0.00 0.00 0.00 3.35
2014 2179 6.771749 GGAATTGGATTGATCTTCATCTCTGT 59.228 38.462 0.00 0.00 0.00 3.41
2015 2180 7.284944 GGAATTGGATTGATCTTCATCTCTGTT 59.715 37.037 0.00 0.00 0.00 3.16
2016 2181 8.591114 AATTGGATTGATCTTCATCTCTGTTT 57.409 30.769 0.00 0.00 0.00 2.83
2017 2182 9.690913 AATTGGATTGATCTTCATCTCTGTTTA 57.309 29.630 0.00 0.00 0.00 2.01
2018 2183 9.690913 ATTGGATTGATCTTCATCTCTGTTTAA 57.309 29.630 0.00 0.00 0.00 1.52
2019 2184 9.519191 TTGGATTGATCTTCATCTCTGTTTAAA 57.481 29.630 0.00 0.00 0.00 1.52
2020 2185 8.950210 TGGATTGATCTTCATCTCTGTTTAAAC 58.050 33.333 11.54 11.54 0.00 2.01
2021 2186 8.401709 GGATTGATCTTCATCTCTGTTTAAACC 58.598 37.037 15.59 0.00 0.00 3.27
2022 2187 9.171877 GATTGATCTTCATCTCTGTTTAAACCT 57.828 33.333 15.59 0.00 0.00 3.50
2024 2189 9.658799 TTGATCTTCATCTCTGTTTAAACCTAG 57.341 33.333 15.59 12.21 0.00 3.02
2025 2190 9.035890 TGATCTTCATCTCTGTTTAAACCTAGA 57.964 33.333 15.59 16.57 0.00 2.43
2027 2192 9.829507 ATCTTCATCTCTGTTTAAACCTAGATG 57.170 33.333 31.07 31.07 42.50 2.90
2028 2193 8.260818 TCTTCATCTCTGTTTAAACCTAGATGG 58.739 37.037 33.14 25.70 42.01 3.51
2029 2194 7.733773 TCATCTCTGTTTAAACCTAGATGGA 57.266 36.000 33.14 24.93 42.01 3.41
2030 2195 8.324191 TCATCTCTGTTTAAACCTAGATGGAT 57.676 34.615 33.14 20.87 42.01 3.41
2031 2196 8.772250 TCATCTCTGTTTAAACCTAGATGGATT 58.228 33.333 33.14 15.81 42.01 3.01
2032 2197 9.401058 CATCTCTGTTTAAACCTAGATGGATTT 57.599 33.333 30.23 13.15 40.18 2.17
2033 2198 9.620259 ATCTCTGTTTAAACCTAGATGGATTTC 57.380 33.333 22.25 0.00 39.71 2.17
2034 2199 8.047310 TCTCTGTTTAAACCTAGATGGATTTCC 58.953 37.037 15.59 0.00 39.71 3.13
2052 2217 4.399004 TTCCACAAAACTGGAATTGGTG 57.601 40.909 0.00 0.00 44.05 4.17
2053 2218 2.697751 TCCACAAAACTGGAATTGGTGG 59.302 45.455 6.50 6.50 37.39 4.61
2054 2219 2.697751 CCACAAAACTGGAATTGGTGGA 59.302 45.455 6.95 0.00 33.42 4.02
2055 2220 3.243839 CCACAAAACTGGAATTGGTGGAG 60.244 47.826 6.95 0.00 33.42 3.86
2056 2221 2.365293 ACAAAACTGGAATTGGTGGAGC 59.635 45.455 0.00 0.00 0.00 4.70
2057 2222 1.632589 AAACTGGAATTGGTGGAGCC 58.367 50.000 0.00 0.00 37.90 4.70
2058 2223 0.251787 AACTGGAATTGGTGGAGCCC 60.252 55.000 0.00 0.00 36.04 5.19
2059 2224 1.383799 CTGGAATTGGTGGAGCCCA 59.616 57.895 0.00 0.00 36.04 5.36
2122 2287 7.807977 ATGAAAATACCGTAGAATGCATCTT 57.192 32.000 0.00 0.00 39.71 2.40
2123 2288 7.246674 TGAAAATACCGTAGAATGCATCTTC 57.753 36.000 0.00 0.00 39.71 2.87
2124 2289 7.047891 TGAAAATACCGTAGAATGCATCTTCT 58.952 34.615 0.00 3.40 39.71 2.85
2125 2290 8.201464 TGAAAATACCGTAGAATGCATCTTCTA 58.799 33.333 0.00 2.26 39.71 2.10
2126 2291 9.209175 GAAAATACCGTAGAATGCATCTTCTAT 57.791 33.333 11.86 1.35 39.31 1.98
2127 2292 8.539770 AAATACCGTAGAATGCATCTTCTATG 57.460 34.615 17.16 17.16 41.40 2.23
2131 2296 6.459257 CGTAGAATGCATCTTCTATGGTTC 57.541 41.667 16.62 2.27 39.49 3.62
2132 2297 5.985530 CGTAGAATGCATCTTCTATGGTTCA 59.014 40.000 16.62 0.00 39.49 3.18
2133 2298 6.145209 CGTAGAATGCATCTTCTATGGTTCAG 59.855 42.308 16.62 1.94 39.49 3.02
2134 2299 5.374921 AGAATGCATCTTCTATGGTTCAGG 58.625 41.667 0.00 0.00 33.39 3.86
2135 2300 3.565764 TGCATCTTCTATGGTTCAGGG 57.434 47.619 0.00 0.00 0.00 4.45
2136 2301 2.846206 TGCATCTTCTATGGTTCAGGGT 59.154 45.455 0.00 0.00 0.00 4.34
2137 2302 3.266772 TGCATCTTCTATGGTTCAGGGTT 59.733 43.478 0.00 0.00 0.00 4.11
2138 2303 3.879892 GCATCTTCTATGGTTCAGGGTTC 59.120 47.826 0.00 0.00 0.00 3.62
2139 2304 4.626287 GCATCTTCTATGGTTCAGGGTTCA 60.626 45.833 0.00 0.00 0.00 3.18
2140 2305 5.500234 CATCTTCTATGGTTCAGGGTTCAA 58.500 41.667 0.00 0.00 0.00 2.69
2141 2306 5.576563 TCTTCTATGGTTCAGGGTTCAAA 57.423 39.130 0.00 0.00 0.00 2.69
2142 2307 5.947663 TCTTCTATGGTTCAGGGTTCAAAA 58.052 37.500 0.00 0.00 0.00 2.44
2143 2308 6.369629 TCTTCTATGGTTCAGGGTTCAAAAA 58.630 36.000 0.00 0.00 0.00 1.94
2177 2342 8.262227 ACATAAAAATCAATTCTGCATGTGGAT 58.738 29.630 0.00 0.00 0.00 3.41
2198 2365 7.066163 GTGGATATTGTGTCTGTTCATCATCAA 59.934 37.037 0.00 0.00 0.00 2.57
2219 2386 6.108687 TCAAGAGATGTTTTGATATCACGCT 58.891 36.000 4.48 0.00 0.00 5.07
2245 2412 5.762218 TGTTTTATTTCAGGCAATTGTTGGG 59.238 36.000 7.40 0.00 0.00 4.12
2252 2419 0.467804 GGCAATTGTTGGGTTGTGGT 59.532 50.000 7.40 0.00 0.00 4.16
2290 2457 2.519013 AGCTGGTTCAATTTCCTGACC 58.481 47.619 0.00 0.00 0.00 4.02
2293 2460 2.884639 CTGGTTCAATTTCCTGACCGTT 59.115 45.455 0.00 0.00 0.00 4.44
2310 2477 7.334921 CCTGACCGTTATTTACATTGGTAAGAA 59.665 37.037 0.00 0.00 40.40 2.52
2311 2478 8.259049 TGACCGTTATTTACATTGGTAAGAAG 57.741 34.615 0.00 0.00 40.40 2.85
2312 2479 7.080353 ACCGTTATTTACATTGGTAAGAAGC 57.920 36.000 0.00 0.00 40.40 3.86
2315 2482 9.052759 CCGTTATTTACATTGGTAAGAAGCTAT 57.947 33.333 0.00 0.00 40.40 2.97
2333 2500 9.785982 AGAAGCTATAACATTTATTTCTCTCCC 57.214 33.333 0.00 0.00 0.00 4.30
2370 2547 7.506114 ACTGAGAAACAACATAACTGTTCCTA 58.494 34.615 0.00 0.00 43.76 2.94
2380 2557 5.640357 ACATAACTGTTCCTATTTCGCGAAA 59.360 36.000 33.83 33.83 28.70 3.46
2404 2581 1.798725 CGTTCCGCTGCTTGCATTG 60.799 57.895 0.00 0.00 43.06 2.82
2411 2588 2.330286 CGCTGCTTGCATTGATGAAAA 58.670 42.857 0.00 0.00 43.06 2.29
2414 2591 3.495377 GCTGCTTGCATTGATGAAAACAA 59.505 39.130 0.00 0.00 42.31 2.83
2415 2592 4.609783 GCTGCTTGCATTGATGAAAACAAC 60.610 41.667 0.00 0.00 42.31 3.32
2416 2593 4.439968 TGCTTGCATTGATGAAAACAACA 58.560 34.783 0.00 0.00 28.93 3.33
2417 2594 4.270566 TGCTTGCATTGATGAAAACAACAC 59.729 37.500 0.00 0.00 28.93 3.32
2421 2598 3.742369 GCATTGATGAAAACAACACCTGG 59.258 43.478 0.00 0.00 28.93 4.45
2423 2600 5.358922 CATTGATGAAAACAACACCTGGTT 58.641 37.500 0.00 0.00 41.47 3.67
2425 2602 5.413309 TGATGAAAACAACACCTGGTTTT 57.587 34.783 0.00 0.00 45.25 2.43
2426 2603 5.174395 TGATGAAAACAACACCTGGTTTTG 58.826 37.500 21.02 21.02 45.25 2.44
2450 2627 1.724582 GAACAGGGTTTGTGTGCGCT 61.725 55.000 9.73 0.00 40.74 5.92
2468 2645 2.281070 CACACGCTCCCTGTGCTT 60.281 61.111 0.00 0.00 41.03 3.91
2594 2771 3.071602 CCACCAAGAGGAACAAGAAGAGA 59.928 47.826 0.00 0.00 38.69 3.10
2602 2779 5.944007 AGAGGAACAAGAAGAGAGAGTAGAC 59.056 44.000 0.00 0.00 0.00 2.59
2649 2838 6.707608 TCATGATTTATCGAGTGAAATCCCTG 59.292 38.462 19.52 17.16 40.04 4.45
2650 2839 4.816385 TGATTTATCGAGTGAAATCCCTGC 59.184 41.667 19.52 4.47 40.04 4.85
2651 2840 4.487714 TTTATCGAGTGAAATCCCTGCT 57.512 40.909 0.00 0.00 0.00 4.24
2652 2841 5.607939 TTTATCGAGTGAAATCCCTGCTA 57.392 39.130 0.00 0.00 0.00 3.49
2653 2842 5.808366 TTATCGAGTGAAATCCCTGCTAT 57.192 39.130 0.00 0.00 0.00 2.97
2654 2843 4.696479 ATCGAGTGAAATCCCTGCTATT 57.304 40.909 0.00 0.00 0.00 1.73
2655 2844 5.808366 ATCGAGTGAAATCCCTGCTATTA 57.192 39.130 0.00 0.00 0.00 0.98
2656 2845 5.808366 TCGAGTGAAATCCCTGCTATTAT 57.192 39.130 0.00 0.00 0.00 1.28
2680 2869 0.239347 CCTAGTTTGTGTGCTGCAGC 59.761 55.000 31.89 31.89 42.50 5.25
2698 2887 2.027745 CAGCCCTGTAGTGTGTCTCAAT 60.028 50.000 0.00 0.00 0.00 2.57
2715 2904 5.123502 GTCTCAATTGTCATGTGAGAGCATT 59.876 40.000 11.98 0.00 46.32 3.56
2818 3010 1.340889 GTGGGATGCTGCTCAACAAAA 59.659 47.619 0.00 0.00 0.00 2.44
2819 3011 2.028748 GTGGGATGCTGCTCAACAAAAT 60.029 45.455 0.00 0.00 0.00 1.82
2848 3040 7.169982 GTGAGACCATAAGTTGTCTGCATATAC 59.830 40.741 0.00 0.00 41.74 1.47
2904 3116 0.524862 AAAGAATTGCTCGCTGCCAG 59.475 50.000 0.00 0.00 42.00 4.85
2916 3128 0.681175 GCTGCCAGGTCCAAATTTGT 59.319 50.000 16.73 0.00 0.00 2.83
2937 3153 3.966218 GTGATCGCGATTTTATTTTCGGG 59.034 43.478 24.55 3.38 46.06 5.14
2943 3159 4.496673 CGCGATTTTATTTTCGGGGATTGA 60.497 41.667 0.00 0.00 42.48 2.57
2976 3192 4.566070 CCATTCTGTCCATGCCCAAATTTT 60.566 41.667 0.00 0.00 0.00 1.82
3041 3257 1.101331 CAGATTTGGGAGGCAGAAGC 58.899 55.000 0.00 0.00 41.10 3.86
3049 3265 1.078567 GAGGCAGAAGCTGACCCAG 60.079 63.158 0.00 0.00 41.11 4.45
3077 3293 2.010582 TTTTCAGGTGGTGTTGCGGC 62.011 55.000 0.00 0.00 0.00 6.53
3110 3326 2.903635 ATGCACCCTGAGCTGCTGT 61.904 57.895 7.01 0.00 34.29 4.40
3223 3440 0.466555 TAAAACCTGCGTTGCCCACT 60.467 50.000 0.00 0.00 30.72 4.00
3225 3442 4.643387 ACCTGCGTTGCCCACTCC 62.643 66.667 0.00 0.00 0.00 3.85
3231 3448 2.286523 CGTTGCCCACTCCTCTCCT 61.287 63.158 0.00 0.00 0.00 3.69
3232 3449 1.599576 GTTGCCCACTCCTCTCCTC 59.400 63.158 0.00 0.00 0.00 3.71
3379 3604 2.878429 CCTCCTCCACGACGACAG 59.122 66.667 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.453070 GAGGGAGCTTAGCAGGCGG 62.453 68.421 7.07 0.00 34.52 6.13
13 14 2.107953 GAGGGAGCTTAGCAGGCG 59.892 66.667 7.07 0.00 34.52 5.52
17 18 4.514577 GCGCGAGGGAGCTTAGCA 62.515 66.667 12.10 0.00 35.92 3.49
74 75 0.752658 AGCAAAACAACTTGGGCTCC 59.247 50.000 0.00 0.00 0.00 4.70
76 77 0.179076 GCAGCAAAACAACTTGGGCT 60.179 50.000 0.00 0.00 0.00 5.19
77 78 1.159713 GGCAGCAAAACAACTTGGGC 61.160 55.000 0.00 0.00 0.00 5.36
78 79 0.875474 CGGCAGCAAAACAACTTGGG 60.875 55.000 0.00 0.00 0.00 4.12
79 80 1.489881 GCGGCAGCAAAACAACTTGG 61.490 55.000 3.18 0.00 44.35 3.61
80 81 1.810221 CGCGGCAGCAAAACAACTTG 61.810 55.000 10.08 0.00 45.49 3.16
81 82 1.588667 CGCGGCAGCAAAACAACTT 60.589 52.632 10.08 0.00 45.49 2.66
82 83 1.795170 ATCGCGGCAGCAAAACAACT 61.795 50.000 10.08 0.00 45.49 3.16
83 84 1.371635 ATCGCGGCAGCAAAACAAC 60.372 52.632 10.08 0.00 45.49 3.32
84 85 1.371512 CATCGCGGCAGCAAAACAA 60.372 52.632 10.08 0.00 45.49 2.83
86 87 2.082366 CACATCGCGGCAGCAAAAC 61.082 57.895 10.08 0.00 45.49 2.43
91 92 3.173390 GATTCCACATCGCGGCAGC 62.173 63.158 6.13 0.00 40.74 5.25
96 97 1.493950 GGCTCAGATTCCACATCGCG 61.494 60.000 0.00 0.00 0.00 5.87
121 126 8.485976 TCAAGAAAAACAACAAATAACCAAGG 57.514 30.769 0.00 0.00 0.00 3.61
126 131 8.376942 TCGCTTTCAAGAAAAACAACAAATAAC 58.623 29.630 0.00 0.00 0.00 1.89
129 134 6.959671 TCGCTTTCAAGAAAAACAACAAAT 57.040 29.167 0.00 0.00 0.00 2.32
200 213 7.441903 ACCCCGAAAGTTTTCTTATCCTATA 57.558 36.000 3.40 0.00 39.48 1.31
201 214 6.323210 ACCCCGAAAGTTTTCTTATCCTAT 57.677 37.500 3.40 0.00 39.48 2.57
279 296 1.003839 CTGCTAACCCGGTCAGCAA 60.004 57.895 16.53 1.21 44.21 3.91
286 303 0.463833 GAACCCATCTGCTAACCCGG 60.464 60.000 0.00 0.00 0.00 5.73
319 339 4.162320 TCATCTCTTCTTCTTACCCGCAAT 59.838 41.667 0.00 0.00 0.00 3.56
323 343 4.106197 CGTTCATCTCTTCTTCTTACCCG 58.894 47.826 0.00 0.00 0.00 5.28
330 350 2.682155 AGGCCGTTCATCTCTTCTTC 57.318 50.000 0.00 0.00 0.00 2.87
331 351 2.569404 AGAAGGCCGTTCATCTCTTCTT 59.431 45.455 14.76 0.00 40.59 2.52
356 376 1.667154 GGGAAGGAGGGCAAAATCGC 61.667 60.000 0.00 0.00 0.00 4.58
370 390 3.876300 CGAAGCAACCGAGGGAAG 58.124 61.111 0.00 0.00 0.00 3.46
388 409 5.643777 ACTAAGAACTCGTTGGATTGATTGG 59.356 40.000 0.00 0.00 0.00 3.16
393 414 6.539649 TCAAACTAAGAACTCGTTGGATTG 57.460 37.500 0.00 0.00 0.00 2.67
448 473 2.299582 TCCCGTTCAACCGAATCTAACA 59.700 45.455 0.00 0.00 32.61 2.41
546 596 9.040939 ACACTTTTTAGCAATTATTGTCCAAAC 57.959 29.630 6.81 0.00 0.00 2.93
590 642 3.329542 GAGCACCCCATCCAAGCGA 62.330 63.158 0.00 0.00 0.00 4.93
591 643 2.825836 GAGCACCCCATCCAAGCG 60.826 66.667 0.00 0.00 0.00 4.68
594 646 1.852157 ACCAGAGCACCCCATCCAA 60.852 57.895 0.00 0.00 0.00 3.53
597 649 0.107654 GTACACCAGAGCACCCCATC 60.108 60.000 0.00 0.00 0.00 3.51
672 730 9.806203 TTTAACAATCAATAGCCATTCATTCAG 57.194 29.630 0.00 0.00 0.00 3.02
683 741 7.761409 TGGATGACTGTTTAACAATCAATAGC 58.239 34.615 13.13 4.00 37.90 2.97
702 760 4.346709 TGACTGGTAAGTTGAGTTGGATGA 59.653 41.667 0.00 0.00 36.52 2.92
708 766 2.706190 AGGCTGACTGGTAAGTTGAGTT 59.294 45.455 0.00 0.00 36.52 3.01
761 901 1.356938 GCCTAAAGCGTGGAGTACAC 58.643 55.000 0.00 0.00 46.78 2.90
768 908 1.644786 CCTTTCGGCCTAAAGCGTGG 61.645 60.000 21.45 7.65 45.17 4.94
813 959 5.786401 ATCACTTTGCTTCGACATACTTC 57.214 39.130 0.00 0.00 0.00 3.01
823 969 0.968405 TGGGCCAATCACTTTGCTTC 59.032 50.000 2.13 0.00 33.73 3.86
902 1049 5.911752 AGACCAACTGACAAGAGCATATAG 58.088 41.667 0.00 0.00 0.00 1.31
952 1110 5.116882 GGAGTAGGATGGTATGTCAAACAC 58.883 45.833 0.00 0.00 0.00 3.32
980 1138 3.422417 TCTTCAGGTATTTCGAGCTCG 57.578 47.619 30.03 30.03 41.45 5.03
1026 1184 0.674581 TGTTGCCCATGAGCTTCTCG 60.675 55.000 0.00 0.00 32.35 4.04
1029 1187 1.466856 TGATGTTGCCCATGAGCTTC 58.533 50.000 0.00 0.00 32.56 3.86
1143 1301 0.179073 CTGGATCGAAACGGCCAGAT 60.179 55.000 20.18 0.00 45.31 2.90
1209 1367 1.075374 CCACCCAAAACTCCATGGAGA 59.925 52.381 41.91 11.06 44.53 3.71
1230 1388 4.021807 TGAGCAGATAACGTACACTTTCCA 60.022 41.667 0.00 0.00 0.00 3.53
1277 1440 1.633915 AAGCCTCAGAGATGCCCAGG 61.634 60.000 0.00 0.00 0.00 4.45
1278 1441 0.255318 AAAGCCTCAGAGATGCCCAG 59.745 55.000 0.00 0.00 0.00 4.45
1286 1449 5.702349 ATGACAAAAGAAAAGCCTCAGAG 57.298 39.130 0.00 0.00 0.00 3.35
1304 1468 3.005554 ACACATCAGCAGCTACAATGAC 58.994 45.455 15.21 0.00 0.00 3.06
1369 1533 1.279496 AGACCCAGATAGCTGTTGCA 58.721 50.000 7.31 0.00 40.63 4.08
1387 1551 4.761739 TGGTAATCAAGCCACTCAAAGAAG 59.238 41.667 0.00 0.00 0.00 2.85
1477 1641 8.017418 ACACTTCAAAAATTCCATACCTTGAA 57.983 30.769 0.00 0.00 33.19 2.69
1510 1674 5.633830 ATGTTGCTGAAAAGGACACATAG 57.366 39.130 0.00 0.00 0.00 2.23
1512 1676 4.082571 GCTATGTTGCTGAAAAGGACACAT 60.083 41.667 0.00 0.00 0.00 3.21
1557 1721 7.482169 TTCAGAAGACCTACATGTAGACAAT 57.518 36.000 30.41 15.56 35.21 2.71
1776 1941 8.957466 GTTAGGCAGAACTGGTTTTCTTTATAT 58.043 33.333 3.99 0.00 33.31 0.86
1788 1953 2.421424 GAGCATTGTTAGGCAGAACTGG 59.579 50.000 3.99 0.00 32.35 4.00
1789 1954 3.076621 TGAGCATTGTTAGGCAGAACTG 58.923 45.455 4.27 0.00 32.35 3.16
1790 1955 3.423539 TGAGCATTGTTAGGCAGAACT 57.576 42.857 4.27 0.00 32.35 3.01
1791 1956 4.397417 AGAATGAGCATTGTTAGGCAGAAC 59.603 41.667 0.00 0.00 32.35 3.01
1792 1957 4.397103 CAGAATGAGCATTGTTAGGCAGAA 59.603 41.667 0.00 0.00 39.69 3.02
1793 1958 3.943381 CAGAATGAGCATTGTTAGGCAGA 59.057 43.478 0.00 0.00 39.69 4.26
1794 1959 3.488721 GCAGAATGAGCATTGTTAGGCAG 60.489 47.826 0.00 0.00 39.69 4.85
1795 1960 2.424601 GCAGAATGAGCATTGTTAGGCA 59.575 45.455 0.00 0.00 39.69 4.75
1796 1961 2.223665 GGCAGAATGAGCATTGTTAGGC 60.224 50.000 0.00 0.00 39.69 3.93
1797 1962 3.285484 AGGCAGAATGAGCATTGTTAGG 58.715 45.455 0.00 0.00 39.69 2.69
1798 1963 5.587844 AGTTAGGCAGAATGAGCATTGTTAG 59.412 40.000 0.00 0.00 39.69 2.34
1799 1964 5.355071 CAGTTAGGCAGAATGAGCATTGTTA 59.645 40.000 0.00 0.00 39.69 2.41
1800 1965 4.157289 CAGTTAGGCAGAATGAGCATTGTT 59.843 41.667 0.00 0.00 39.69 2.83
1801 1966 3.693085 CAGTTAGGCAGAATGAGCATTGT 59.307 43.478 0.00 0.00 39.69 2.71
1802 1967 3.693085 ACAGTTAGGCAGAATGAGCATTG 59.307 43.478 0.00 0.00 39.69 2.82
1803 1968 3.960571 ACAGTTAGGCAGAATGAGCATT 58.039 40.909 0.00 0.00 39.69 3.56
1804 1969 3.641434 ACAGTTAGGCAGAATGAGCAT 57.359 42.857 0.00 0.00 39.69 3.79
1805 1970 3.423539 AACAGTTAGGCAGAATGAGCA 57.576 42.857 0.00 0.00 39.69 4.26
1806 1971 4.479619 CAAAACAGTTAGGCAGAATGAGC 58.520 43.478 0.00 0.00 39.69 4.26
1807 1972 4.479619 GCAAAACAGTTAGGCAGAATGAG 58.520 43.478 4.61 0.00 39.69 2.90
1808 1973 3.255642 GGCAAAACAGTTAGGCAGAATGA 59.744 43.478 10.35 0.00 39.69 2.57
1809 1974 3.578688 GGCAAAACAGTTAGGCAGAATG 58.421 45.455 10.35 0.00 40.87 2.67
1810 1975 2.562738 GGGCAAAACAGTTAGGCAGAAT 59.437 45.455 12.47 0.00 0.00 2.40
1811 1976 1.960689 GGGCAAAACAGTTAGGCAGAA 59.039 47.619 12.47 0.00 0.00 3.02
1812 1977 1.144913 AGGGCAAAACAGTTAGGCAGA 59.855 47.619 12.47 0.00 0.00 4.26
1813 1978 1.620822 AGGGCAAAACAGTTAGGCAG 58.379 50.000 12.47 0.00 0.00 4.85
1814 1979 1.686052 CAAGGGCAAAACAGTTAGGCA 59.314 47.619 12.47 0.00 0.00 4.75
1815 1980 1.960689 TCAAGGGCAAAACAGTTAGGC 59.039 47.619 4.19 4.19 0.00 3.93
1816 1981 5.652014 TGATATCAAGGGCAAAACAGTTAGG 59.348 40.000 1.98 0.00 0.00 2.69
1817 1982 6.757897 TGATATCAAGGGCAAAACAGTTAG 57.242 37.500 1.98 0.00 0.00 2.34
1818 1983 6.889177 TGATGATATCAAGGGCAAAACAGTTA 59.111 34.615 9.99 0.00 36.11 2.24
1819 1984 5.716228 TGATGATATCAAGGGCAAAACAGTT 59.284 36.000 9.99 0.00 36.11 3.16
1820 1985 5.263599 TGATGATATCAAGGGCAAAACAGT 58.736 37.500 9.99 0.00 36.11 3.55
1821 1986 5.840243 TGATGATATCAAGGGCAAAACAG 57.160 39.130 9.99 0.00 36.11 3.16
1822 1987 5.892686 TGATGATGATATCAAGGGCAAAACA 59.107 36.000 9.99 5.99 43.50 2.83
1823 1988 6.395426 TGATGATGATATCAAGGGCAAAAC 57.605 37.500 9.99 3.92 43.50 2.43
1824 1989 6.014925 CCATGATGATGATATCAAGGGCAAAA 60.015 38.462 9.99 0.40 43.50 2.44
1825 1990 5.479027 CCATGATGATGATATCAAGGGCAAA 59.521 40.000 9.99 0.70 43.50 3.68
1826 1991 5.014202 CCATGATGATGATATCAAGGGCAA 58.986 41.667 9.99 0.00 43.50 4.52
1827 1992 4.595986 CCATGATGATGATATCAAGGGCA 58.404 43.478 9.99 6.81 43.50 5.36
1828 1993 3.380637 GCCATGATGATGATATCAAGGGC 59.619 47.826 9.99 11.62 45.65 5.19
1829 1994 4.856509 AGCCATGATGATGATATCAAGGG 58.143 43.478 9.99 5.10 43.00 3.95
1830 1995 5.393135 GCAAGCCATGATGATGATATCAAGG 60.393 44.000 9.99 5.83 44.65 3.61
1831 1996 5.416013 AGCAAGCCATGATGATGATATCAAG 59.584 40.000 9.99 0.00 43.50 3.02
1832 1997 5.321927 AGCAAGCCATGATGATGATATCAA 58.678 37.500 9.99 0.00 43.50 2.57
1833 1998 4.918588 AGCAAGCCATGATGATGATATCA 58.081 39.130 8.10 8.10 44.55 2.15
1842 2007 4.079970 AGATATTCCAGCAAGCCATGATG 58.920 43.478 0.00 0.00 45.09 3.07
1843 2008 4.079970 CAGATATTCCAGCAAGCCATGAT 58.920 43.478 0.00 0.00 0.00 2.45
1844 2009 3.483421 CAGATATTCCAGCAAGCCATGA 58.517 45.455 0.00 0.00 0.00 3.07
1845 2010 2.557056 CCAGATATTCCAGCAAGCCATG 59.443 50.000 0.00 0.00 0.00 3.66
1846 2011 2.444388 TCCAGATATTCCAGCAAGCCAT 59.556 45.455 0.00 0.00 0.00 4.40
1847 2012 1.845791 TCCAGATATTCCAGCAAGCCA 59.154 47.619 0.00 0.00 0.00 4.75
1848 2013 2.645838 TCCAGATATTCCAGCAAGCC 57.354 50.000 0.00 0.00 0.00 4.35
1849 2014 4.139786 TGAATCCAGATATTCCAGCAAGC 58.860 43.478 0.00 0.00 35.40 4.01
1850 2015 5.618236 TCTGAATCCAGATATTCCAGCAAG 58.382 41.667 0.00 0.00 44.01 4.01
1851 2016 5.635278 TCTGAATCCAGATATTCCAGCAA 57.365 39.130 0.00 0.00 44.01 3.91
1881 2046 5.764686 GGGCAGACCATTTTTGAAGATTTTT 59.235 36.000 0.00 0.00 39.85 1.94
1882 2047 5.163216 TGGGCAGACCATTTTTGAAGATTTT 60.163 36.000 0.00 0.00 46.80 1.82
1883 2048 4.347583 TGGGCAGACCATTTTTGAAGATTT 59.652 37.500 0.00 0.00 46.80 2.17
1884 2049 3.903090 TGGGCAGACCATTTTTGAAGATT 59.097 39.130 0.00 0.00 46.80 2.40
1885 2050 3.509442 TGGGCAGACCATTTTTGAAGAT 58.491 40.909 0.00 0.00 46.80 2.40
1886 2051 2.956132 TGGGCAGACCATTTTTGAAGA 58.044 42.857 0.00 0.00 46.80 2.87
1897 2062 1.490574 ATAGAGACACTGGGCAGACC 58.509 55.000 0.00 0.00 40.81 3.85
1898 2063 3.265791 CAAATAGAGACACTGGGCAGAC 58.734 50.000 0.00 0.00 0.00 3.51
1899 2064 2.237143 CCAAATAGAGACACTGGGCAGA 59.763 50.000 0.00 0.00 0.00 4.26
1900 2065 2.237143 TCCAAATAGAGACACTGGGCAG 59.763 50.000 0.00 0.00 0.00 4.85
1901 2066 2.237143 CTCCAAATAGAGACACTGGGCA 59.763 50.000 0.00 0.00 35.82 5.36
1902 2067 2.420687 CCTCCAAATAGAGACACTGGGC 60.421 54.545 0.00 0.00 35.82 5.36
1903 2068 2.420687 GCCTCCAAATAGAGACACTGGG 60.421 54.545 0.00 0.00 35.82 4.45
1904 2069 2.237143 TGCCTCCAAATAGAGACACTGG 59.763 50.000 0.00 0.00 35.82 4.00
1905 2070 3.265791 GTGCCTCCAAATAGAGACACTG 58.734 50.000 1.36 0.00 42.18 3.66
1906 2071 3.618690 GTGCCTCCAAATAGAGACACT 57.381 47.619 1.36 0.00 42.18 3.55
1907 2072 3.618690 AGTGCCTCCAAATAGAGACAC 57.381 47.619 0.35 0.35 44.80 3.67
1908 2073 3.869912 GCAAGTGCCTCCAAATAGAGACA 60.870 47.826 0.00 0.00 35.82 3.41
1909 2074 2.680339 GCAAGTGCCTCCAAATAGAGAC 59.320 50.000 0.00 0.00 35.82 3.36
1910 2075 2.573462 AGCAAGTGCCTCCAAATAGAGA 59.427 45.455 0.00 0.00 43.38 3.10
1911 2076 2.996631 AGCAAGTGCCTCCAAATAGAG 58.003 47.619 0.00 0.00 43.38 2.43
1912 2077 3.439857 AAGCAAGTGCCTCCAAATAGA 57.560 42.857 0.00 0.00 43.38 1.98
1913 2078 4.943705 TCTTAAGCAAGTGCCTCCAAATAG 59.056 41.667 0.00 0.00 43.38 1.73
1914 2079 4.917385 TCTTAAGCAAGTGCCTCCAAATA 58.083 39.130 0.00 0.00 43.38 1.40
1915 2080 3.766545 TCTTAAGCAAGTGCCTCCAAAT 58.233 40.909 0.00 0.00 43.38 2.32
1916 2081 3.222173 TCTTAAGCAAGTGCCTCCAAA 57.778 42.857 0.00 0.00 43.38 3.28
1917 2082 2.884639 GTTCTTAAGCAAGTGCCTCCAA 59.115 45.455 0.00 0.00 43.38 3.53
1918 2083 2.106511 AGTTCTTAAGCAAGTGCCTCCA 59.893 45.455 0.00 0.00 43.38 3.86
1919 2084 2.784347 AGTTCTTAAGCAAGTGCCTCC 58.216 47.619 0.00 0.00 43.38 4.30
1920 2085 5.293079 CAGATAGTTCTTAAGCAAGTGCCTC 59.707 44.000 0.00 0.00 43.38 4.70
1921 2086 5.181748 CAGATAGTTCTTAAGCAAGTGCCT 58.818 41.667 0.00 0.00 43.38 4.75
1922 2087 4.201861 GCAGATAGTTCTTAAGCAAGTGCC 60.202 45.833 0.00 0.00 43.38 5.01
1923 2088 4.633565 AGCAGATAGTTCTTAAGCAAGTGC 59.366 41.667 0.00 0.00 42.49 4.40
1924 2089 6.593382 AGAAGCAGATAGTTCTTAAGCAAGTG 59.407 38.462 0.00 0.00 33.20 3.16
1925 2090 6.706295 AGAAGCAGATAGTTCTTAAGCAAGT 58.294 36.000 0.00 0.00 33.20 3.16
1926 2091 6.815641 TGAGAAGCAGATAGTTCTTAAGCAAG 59.184 38.462 0.00 0.00 33.04 4.01
1927 2092 6.701340 TGAGAAGCAGATAGTTCTTAAGCAA 58.299 36.000 0.00 0.00 33.04 3.91
1928 2093 6.286240 TGAGAAGCAGATAGTTCTTAAGCA 57.714 37.500 0.00 0.00 33.04 3.91
1929 2094 9.139174 GATATGAGAAGCAGATAGTTCTTAAGC 57.861 37.037 0.00 0.00 33.04 3.09
1931 2096 9.973450 GTGATATGAGAAGCAGATAGTTCTTAA 57.027 33.333 0.00 0.00 33.04 1.85
1932 2097 9.136323 TGTGATATGAGAAGCAGATAGTTCTTA 57.864 33.333 0.00 0.00 33.04 2.10
1933 2098 7.925483 GTGTGATATGAGAAGCAGATAGTTCTT 59.075 37.037 0.00 0.00 33.04 2.52
1934 2099 7.069208 TGTGTGATATGAGAAGCAGATAGTTCT 59.931 37.037 0.00 0.00 35.67 3.01
1935 2100 7.205992 TGTGTGATATGAGAAGCAGATAGTTC 58.794 38.462 0.00 0.00 0.00 3.01
1936 2101 7.117285 TGTGTGATATGAGAAGCAGATAGTT 57.883 36.000 0.00 0.00 0.00 2.24
1937 2102 6.721704 TGTGTGATATGAGAAGCAGATAGT 57.278 37.500 0.00 0.00 0.00 2.12
1938 2103 9.872721 ATTATGTGTGATATGAGAAGCAGATAG 57.127 33.333 0.00 0.00 0.00 2.08
1939 2104 9.866798 GATTATGTGTGATATGAGAAGCAGATA 57.133 33.333 0.00 0.00 0.00 1.98
1940 2105 8.373220 TGATTATGTGTGATATGAGAAGCAGAT 58.627 33.333 0.00 0.00 0.00 2.90
1941 2106 7.729116 TGATTATGTGTGATATGAGAAGCAGA 58.271 34.615 0.00 0.00 0.00 4.26
1942 2107 7.958053 TGATTATGTGTGATATGAGAAGCAG 57.042 36.000 0.00 0.00 0.00 4.24
1943 2108 8.735692 TTTGATTATGTGTGATATGAGAAGCA 57.264 30.769 0.00 0.00 0.00 3.91
1944 2109 9.661187 CTTTTGATTATGTGTGATATGAGAAGC 57.339 33.333 0.00 0.00 0.00 3.86
1945 2110 9.661187 GCTTTTGATTATGTGTGATATGAGAAG 57.339 33.333 0.00 0.00 0.00 2.85
1946 2111 9.176460 TGCTTTTGATTATGTGTGATATGAGAA 57.824 29.630 0.00 0.00 0.00 2.87
1947 2112 8.735692 TGCTTTTGATTATGTGTGATATGAGA 57.264 30.769 0.00 0.00 0.00 3.27
1948 2113 9.447040 CTTGCTTTTGATTATGTGTGATATGAG 57.553 33.333 0.00 0.00 0.00 2.90
1949 2114 7.916977 GCTTGCTTTTGATTATGTGTGATATGA 59.083 33.333 0.00 0.00 0.00 2.15
1950 2115 7.703197 TGCTTGCTTTTGATTATGTGTGATATG 59.297 33.333 0.00 0.00 0.00 1.78
1951 2116 7.774134 TGCTTGCTTTTGATTATGTGTGATAT 58.226 30.769 0.00 0.00 0.00 1.63
1952 2117 7.155655 TGCTTGCTTTTGATTATGTGTGATA 57.844 32.000 0.00 0.00 0.00 2.15
1953 2118 6.028146 TGCTTGCTTTTGATTATGTGTGAT 57.972 33.333 0.00 0.00 0.00 3.06
1954 2119 5.450592 TGCTTGCTTTTGATTATGTGTGA 57.549 34.783 0.00 0.00 0.00 3.58
1955 2120 7.703197 TGATATGCTTGCTTTTGATTATGTGTG 59.297 33.333 0.00 0.00 0.00 3.82
1956 2121 7.774134 TGATATGCTTGCTTTTGATTATGTGT 58.226 30.769 0.00 0.00 0.00 3.72
1957 2122 8.132995 TCTGATATGCTTGCTTTTGATTATGTG 58.867 33.333 0.00 0.00 0.00 3.21
1958 2123 8.229253 TCTGATATGCTTGCTTTTGATTATGT 57.771 30.769 0.00 0.00 0.00 2.29
1959 2124 8.350722 ACTCTGATATGCTTGCTTTTGATTATG 58.649 33.333 0.00 0.00 0.00 1.90
1960 2125 8.461249 ACTCTGATATGCTTGCTTTTGATTAT 57.539 30.769 0.00 0.00 0.00 1.28
1961 2126 7.870509 ACTCTGATATGCTTGCTTTTGATTA 57.129 32.000 0.00 0.00 0.00 1.75
1962 2127 6.770746 ACTCTGATATGCTTGCTTTTGATT 57.229 33.333 0.00 0.00 0.00 2.57
1963 2128 6.376299 TGAACTCTGATATGCTTGCTTTTGAT 59.624 34.615 0.00 0.00 0.00 2.57
1964 2129 5.706833 TGAACTCTGATATGCTTGCTTTTGA 59.293 36.000 0.00 0.00 0.00 2.69
1965 2130 5.946298 TGAACTCTGATATGCTTGCTTTTG 58.054 37.500 0.00 0.00 0.00 2.44
1966 2131 5.125097 CCTGAACTCTGATATGCTTGCTTTT 59.875 40.000 0.00 0.00 0.00 2.27
1967 2132 4.639310 CCTGAACTCTGATATGCTTGCTTT 59.361 41.667 0.00 0.00 0.00 3.51
1968 2133 4.080695 TCCTGAACTCTGATATGCTTGCTT 60.081 41.667 0.00 0.00 0.00 3.91
1969 2134 3.453717 TCCTGAACTCTGATATGCTTGCT 59.546 43.478 0.00 0.00 0.00 3.91
1970 2135 3.801698 TCCTGAACTCTGATATGCTTGC 58.198 45.455 0.00 0.00 0.00 4.01
1971 2136 6.238676 CCAATTCCTGAACTCTGATATGCTTG 60.239 42.308 0.00 0.00 0.00 4.01
1972 2137 5.826737 CCAATTCCTGAACTCTGATATGCTT 59.173 40.000 0.00 0.00 0.00 3.91
1973 2138 5.131642 TCCAATTCCTGAACTCTGATATGCT 59.868 40.000 0.00 0.00 0.00 3.79
1974 2139 5.371526 TCCAATTCCTGAACTCTGATATGC 58.628 41.667 0.00 0.00 0.00 3.14
1975 2140 7.718314 TCAATCCAATTCCTGAACTCTGATATG 59.282 37.037 0.00 0.00 0.00 1.78
1976 2141 7.809238 TCAATCCAATTCCTGAACTCTGATAT 58.191 34.615 0.00 0.00 0.00 1.63
1977 2142 7.199167 TCAATCCAATTCCTGAACTCTGATA 57.801 36.000 0.00 0.00 0.00 2.15
1978 2143 6.070951 TCAATCCAATTCCTGAACTCTGAT 57.929 37.500 0.00 0.00 0.00 2.90
1979 2144 5.503634 TCAATCCAATTCCTGAACTCTGA 57.496 39.130 0.00 0.00 0.00 3.27
1980 2145 6.120905 AGATCAATCCAATTCCTGAACTCTG 58.879 40.000 0.00 0.00 0.00 3.35
1981 2146 6.324601 AGATCAATCCAATTCCTGAACTCT 57.675 37.500 0.00 0.00 0.00 3.24
1982 2147 6.600822 TGAAGATCAATCCAATTCCTGAACTC 59.399 38.462 0.00 0.00 0.00 3.01
1983 2148 6.487828 TGAAGATCAATCCAATTCCTGAACT 58.512 36.000 0.00 0.00 0.00 3.01
1984 2149 6.764308 TGAAGATCAATCCAATTCCTGAAC 57.236 37.500 0.00 0.00 0.00 3.18
1985 2150 7.351952 AGATGAAGATCAATCCAATTCCTGAA 58.648 34.615 0.00 0.00 0.00 3.02
1986 2151 6.907961 AGATGAAGATCAATCCAATTCCTGA 58.092 36.000 0.00 0.00 0.00 3.86
1987 2152 6.999272 AGAGATGAAGATCAATCCAATTCCTG 59.001 38.462 0.00 0.00 0.00 3.86
1988 2153 6.999272 CAGAGATGAAGATCAATCCAATTCCT 59.001 38.462 0.00 0.00 0.00 3.36
1989 2154 6.771749 ACAGAGATGAAGATCAATCCAATTCC 59.228 38.462 0.00 0.00 0.00 3.01
1990 2155 7.804843 ACAGAGATGAAGATCAATCCAATTC 57.195 36.000 0.00 0.00 0.00 2.17
1991 2156 8.591114 AAACAGAGATGAAGATCAATCCAATT 57.409 30.769 0.00 0.00 0.00 2.32
1992 2157 9.690913 TTAAACAGAGATGAAGATCAATCCAAT 57.309 29.630 0.00 0.00 0.00 3.16
1993 2158 9.519191 TTTAAACAGAGATGAAGATCAATCCAA 57.481 29.630 0.00 0.00 0.00 3.53
1994 2159 8.950210 GTTTAAACAGAGATGAAGATCAATCCA 58.050 33.333 13.51 0.00 0.00 3.41
1995 2160 8.401709 GGTTTAAACAGAGATGAAGATCAATCC 58.598 37.037 19.57 0.00 0.00 3.01
1996 2161 9.171877 AGGTTTAAACAGAGATGAAGATCAATC 57.828 33.333 19.57 0.00 0.00 2.67
1998 2163 9.658799 CTAGGTTTAAACAGAGATGAAGATCAA 57.341 33.333 19.57 0.00 0.00 2.57
1999 2164 9.035890 TCTAGGTTTAAACAGAGATGAAGATCA 57.964 33.333 19.57 0.00 0.00 2.92
2001 2166 9.829507 CATCTAGGTTTAAACAGAGATGAAGAT 57.170 33.333 33.02 20.12 44.29 2.40
2002 2167 8.260818 CCATCTAGGTTTAAACAGAGATGAAGA 58.739 37.037 35.35 20.97 44.29 2.87
2003 2168 8.260818 TCCATCTAGGTTTAAACAGAGATGAAG 58.739 37.037 35.35 27.13 44.29 3.02
2004 2169 8.146053 TCCATCTAGGTTTAAACAGAGATGAA 57.854 34.615 35.35 25.86 44.29 2.57
2005 2170 7.733773 TCCATCTAGGTTTAAACAGAGATGA 57.266 36.000 35.35 26.33 44.29 2.92
2006 2171 8.970859 AATCCATCTAGGTTTAAACAGAGATG 57.029 34.615 31.43 31.43 42.86 2.90
2007 2172 9.620259 GAAATCCATCTAGGTTTAAACAGAGAT 57.380 33.333 19.57 20.08 39.02 2.75
2008 2173 8.047310 GGAAATCCATCTAGGTTTAAACAGAGA 58.953 37.037 19.57 18.91 39.02 3.10
2009 2174 7.829211 TGGAAATCCATCTAGGTTTAAACAGAG 59.171 37.037 19.57 14.74 42.01 3.35
2010 2175 7.695055 TGGAAATCCATCTAGGTTTAAACAGA 58.305 34.615 19.57 14.40 42.01 3.41
2011 2176 7.938140 TGGAAATCCATCTAGGTTTAAACAG 57.062 36.000 19.57 9.64 42.01 3.16
2032 2197 2.697751 CCACCAATTCCAGTTTTGTGGA 59.302 45.455 0.00 0.00 45.37 4.02
2033 2198 2.697751 TCCACCAATTCCAGTTTTGTGG 59.302 45.455 0.00 0.00 39.19 4.17
2034 2199 3.799917 GCTCCACCAATTCCAGTTTTGTG 60.800 47.826 0.00 0.00 0.00 3.33
2035 2200 2.365293 GCTCCACCAATTCCAGTTTTGT 59.635 45.455 0.00 0.00 0.00 2.83
2036 2201 2.289010 GGCTCCACCAATTCCAGTTTTG 60.289 50.000 0.00 0.00 38.86 2.44
2037 2202 1.970640 GGCTCCACCAATTCCAGTTTT 59.029 47.619 0.00 0.00 38.86 2.43
2038 2203 1.632589 GGCTCCACCAATTCCAGTTT 58.367 50.000 0.00 0.00 38.86 2.66
2039 2204 0.251787 GGGCTCCACCAATTCCAGTT 60.252 55.000 0.00 0.00 42.05 3.16
2040 2205 1.384191 GGGCTCCACCAATTCCAGT 59.616 57.895 0.00 0.00 42.05 4.00
2041 2206 0.251742 TTGGGCTCCACCAATTCCAG 60.252 55.000 0.00 0.00 45.19 3.86
2042 2207 1.857049 TTGGGCTCCACCAATTCCA 59.143 52.632 0.00 0.00 45.19 3.53
2043 2208 4.863415 TTGGGCTCCACCAATTCC 57.137 55.556 0.00 0.00 45.19 3.01
2096 2261 9.507329 AAGATGCATTCTACGGTATTTTCATAT 57.493 29.630 0.00 0.00 33.05 1.78
2097 2262 8.902540 AAGATGCATTCTACGGTATTTTCATA 57.097 30.769 0.00 0.00 33.05 2.15
2098 2263 7.716998 AGAAGATGCATTCTACGGTATTTTCAT 59.283 33.333 0.00 0.00 37.76 2.57
2099 2264 7.047891 AGAAGATGCATTCTACGGTATTTTCA 58.952 34.615 0.00 0.00 37.76 2.69
2100 2265 7.484035 AGAAGATGCATTCTACGGTATTTTC 57.516 36.000 0.00 0.00 37.76 2.29
2101 2266 8.993121 CATAGAAGATGCATTCTACGGTATTTT 58.007 33.333 11.11 0.00 42.88 1.82
2102 2267 7.604164 CCATAGAAGATGCATTCTACGGTATTT 59.396 37.037 12.13 0.00 42.88 1.40
2103 2268 7.099764 CCATAGAAGATGCATTCTACGGTATT 58.900 38.462 12.13 0.00 42.88 1.89
2104 2269 6.634805 CCATAGAAGATGCATTCTACGGTAT 58.365 40.000 12.13 0.00 42.88 2.73
2105 2270 6.025749 CCATAGAAGATGCATTCTACGGTA 57.974 41.667 12.13 0.00 42.88 4.02
2106 2271 4.887748 CCATAGAAGATGCATTCTACGGT 58.112 43.478 12.13 0.00 42.88 4.83
2107 2272 4.887748 ACCATAGAAGATGCATTCTACGG 58.112 43.478 16.80 16.80 46.02 4.02
2108 2273 5.985530 TGAACCATAGAAGATGCATTCTACG 59.014 40.000 11.11 4.43 42.88 3.51
2109 2274 6.426328 CCTGAACCATAGAAGATGCATTCTAC 59.574 42.308 11.11 1.26 42.88 2.59
2110 2275 6.464892 CCCTGAACCATAGAAGATGCATTCTA 60.465 42.308 11.25 11.25 43.89 2.10
2111 2276 5.374921 CCTGAACCATAGAAGATGCATTCT 58.625 41.667 0.00 3.98 42.20 2.40
2112 2277 4.518211 CCCTGAACCATAGAAGATGCATTC 59.482 45.833 0.00 0.00 0.00 2.67
2113 2278 4.079558 ACCCTGAACCATAGAAGATGCATT 60.080 41.667 0.00 0.00 0.00 3.56
2114 2279 3.461085 ACCCTGAACCATAGAAGATGCAT 59.539 43.478 0.00 0.00 0.00 3.96
2115 2280 2.846206 ACCCTGAACCATAGAAGATGCA 59.154 45.455 0.00 0.00 0.00 3.96
2116 2281 3.567478 ACCCTGAACCATAGAAGATGC 57.433 47.619 0.00 0.00 0.00 3.91
2117 2282 5.102953 TGAACCCTGAACCATAGAAGATG 57.897 43.478 0.00 0.00 0.00 2.90
2118 2283 5.779241 TTGAACCCTGAACCATAGAAGAT 57.221 39.130 0.00 0.00 0.00 2.40
2119 2284 5.576563 TTTGAACCCTGAACCATAGAAGA 57.423 39.130 0.00 0.00 0.00 2.87
2120 2285 6.648879 TTTTTGAACCCTGAACCATAGAAG 57.351 37.500 0.00 0.00 0.00 2.85
2144 2309 9.558396 TGCAGAATTGATTTTTATGTTTTTCCT 57.442 25.926 0.00 0.00 0.00 3.36
2149 2314 8.723311 CCACATGCAGAATTGATTTTTATGTTT 58.277 29.630 0.00 0.00 0.00 2.83
2150 2315 8.095792 TCCACATGCAGAATTGATTTTTATGTT 58.904 29.630 0.00 0.00 0.00 2.71
2151 2316 7.613585 TCCACATGCAGAATTGATTTTTATGT 58.386 30.769 0.00 0.00 0.00 2.29
2152 2317 8.657074 ATCCACATGCAGAATTGATTTTTATG 57.343 30.769 0.00 0.00 0.00 1.90
2155 2320 9.104965 CAATATCCACATGCAGAATTGATTTTT 57.895 29.630 0.00 0.00 0.00 1.94
2156 2321 8.262227 ACAATATCCACATGCAGAATTGATTTT 58.738 29.630 17.45 0.00 0.00 1.82
2157 2322 7.709182 CACAATATCCACATGCAGAATTGATTT 59.291 33.333 17.45 0.00 0.00 2.17
2158 2323 7.147794 ACACAATATCCACATGCAGAATTGATT 60.148 33.333 17.45 4.77 0.00 2.57
2159 2324 6.322969 ACACAATATCCACATGCAGAATTGAT 59.677 34.615 17.45 0.00 0.00 2.57
2165 2330 4.193865 CAGACACAATATCCACATGCAGA 58.806 43.478 0.00 0.00 0.00 4.26
2177 2342 7.614494 TCTCTTGATGATGAACAGACACAATA 58.386 34.615 0.00 0.00 0.00 1.90
2198 2365 7.212976 ACATAGCGTGATATCAAAACATCTCT 58.787 34.615 7.07 0.00 0.00 3.10
2212 2379 5.356751 TGCCTGAAATAAAACATAGCGTGAT 59.643 36.000 0.00 0.00 0.00 3.06
2219 2386 7.605691 CCCAACAATTGCCTGAAATAAAACATA 59.394 33.333 5.05 0.00 0.00 2.29
2269 2436 3.686016 GGTCAGGAAATTGAACCAGCTA 58.314 45.455 0.00 0.00 0.00 3.32
2281 2448 6.005198 ACCAATGTAAATAACGGTCAGGAAA 58.995 36.000 0.00 0.00 0.00 3.13
2310 2477 8.281529 AGGGGAGAGAAATAAATGTTATAGCT 57.718 34.615 0.00 0.00 0.00 3.32
2311 2478 8.926092 AAGGGGAGAGAAATAAATGTTATAGC 57.074 34.615 0.00 0.00 0.00 2.97
2360 2537 3.120304 GCTTTCGCGAAATAGGAACAGTT 60.120 43.478 32.28 0.00 0.00 3.16
2392 2569 3.061322 TGTTTTCATCAATGCAAGCAGC 58.939 40.909 0.00 0.00 45.96 5.25
2393 2570 4.508492 TGTTGTTTTCATCAATGCAAGCAG 59.492 37.500 0.00 0.00 28.09 4.24
2394 2571 4.270566 GTGTTGTTTTCATCAATGCAAGCA 59.729 37.500 0.00 0.00 32.31 3.91
2395 2572 4.318974 GGTGTTGTTTTCATCAATGCAAGC 60.319 41.667 0.00 0.00 32.31 4.01
2400 2577 4.947645 ACCAGGTGTTGTTTTCATCAATG 58.052 39.130 0.00 0.00 32.31 2.82
2404 2581 4.033932 GCAAAACCAGGTGTTGTTTTCATC 59.966 41.667 21.79 1.83 41.40 2.92
2411 2588 0.823460 CAGGCAAAACCAGGTGTTGT 59.177 50.000 21.79 2.25 43.14 3.32
2414 2591 0.032615 TTCCAGGCAAAACCAGGTGT 60.033 50.000 0.00 0.00 45.46 4.16
2415 2592 0.389025 GTTCCAGGCAAAACCAGGTG 59.611 55.000 0.00 0.00 45.46 4.00
2416 2593 0.032615 TGTTCCAGGCAAAACCAGGT 60.033 50.000 0.00 0.00 45.46 4.00
2417 2594 0.675633 CTGTTCCAGGCAAAACCAGG 59.324 55.000 0.00 0.00 46.66 4.45
2468 2645 3.005554 CTGGTCCTCGTACTTCTCGTAA 58.994 50.000 0.00 0.00 0.00 3.18
2528 2705 1.891150 TCGAGTTTCTGGTACTGGTCC 59.109 52.381 0.00 0.00 0.00 4.46
2531 2708 2.927014 GCTGTCGAGTTTCTGGTACTGG 60.927 54.545 0.00 0.00 0.00 4.00
2594 2771 7.237471 TCCATCTGATCTGATCTAGTCTACTCT 59.763 40.741 17.82 0.00 0.00 3.24
2602 2779 5.769162 TGAGTGTCCATCTGATCTGATCTAG 59.231 44.000 17.82 13.09 0.00 2.43
2649 2838 6.719365 CACACAAACTAGGCAGAATAATAGC 58.281 40.000 0.00 0.00 0.00 2.97
2650 2839 6.540189 AGCACACAAACTAGGCAGAATAATAG 59.460 38.462 0.00 0.00 0.00 1.73
2651 2840 6.316140 CAGCACACAAACTAGGCAGAATAATA 59.684 38.462 0.00 0.00 0.00 0.98
2652 2841 5.124457 CAGCACACAAACTAGGCAGAATAAT 59.876 40.000 0.00 0.00 0.00 1.28
2653 2842 4.455533 CAGCACACAAACTAGGCAGAATAA 59.544 41.667 0.00 0.00 0.00 1.40
2654 2843 4.002982 CAGCACACAAACTAGGCAGAATA 58.997 43.478 0.00 0.00 0.00 1.75
2655 2844 2.816087 CAGCACACAAACTAGGCAGAAT 59.184 45.455 0.00 0.00 0.00 2.40
2656 2845 2.221169 CAGCACACAAACTAGGCAGAA 58.779 47.619 0.00 0.00 0.00 3.02
2680 2869 3.997021 GACAATTGAGACACACTACAGGG 59.003 47.826 13.59 0.00 0.00 4.45
2698 2887 4.492791 CACAAATGCTCTCACATGACAA 57.507 40.909 0.00 0.00 0.00 3.18
2715 2904 4.481195 GGAAGCACCTGAGCACAA 57.519 55.556 0.00 0.00 36.85 3.33
2724 2913 1.239347 GGTTCTGTTCAGGAAGCACC 58.761 55.000 0.00 0.00 39.88 5.01
2831 3023 7.182817 ACTTCCAGTATATGCAGACAACTTA 57.817 36.000 0.00 0.00 0.00 2.24
2848 3040 3.499918 ACGAATTTGAGCTCAACTTCCAG 59.500 43.478 35.13 28.35 40.33 3.86
2904 3116 1.466950 TCGCGATCACAAATTTGGACC 59.533 47.619 21.74 6.99 0.00 4.46
2916 3128 3.002862 CCCCGAAAATAAAATCGCGATCA 59.997 43.478 23.92 11.22 37.73 2.92
2937 3153 5.689564 ACAGAATGGATGTGGATCTCAATCC 60.690 44.000 11.78 11.78 46.62 3.01
2943 3159 3.117745 TGGACAGAATGGATGTGGATCT 58.882 45.455 0.00 0.00 43.62 2.75
2953 3169 1.559368 TTTGGGCATGGACAGAATGG 58.441 50.000 0.00 0.00 43.62 3.16
2976 3192 5.221224 ACCAGATTTTTCGACAGAATGCAAA 60.221 36.000 0.00 0.00 42.53 3.68
2993 3209 1.425066 TCTGCACCCTTTGACCAGATT 59.575 47.619 0.00 0.00 0.00 2.40
3034 3250 1.073897 AACCTGGGTCAGCTTCTGC 59.926 57.895 0.00 0.00 40.05 4.26
3041 3257 4.204012 TGAAAACTAACAACCTGGGTCAG 58.796 43.478 0.00 0.00 0.00 3.51
3049 3265 3.697542 ACACCACCTGAAAACTAACAACC 59.302 43.478 0.00 0.00 0.00 3.77
3132 3348 1.372087 CTGCCCTGCACTCCGATTTC 61.372 60.000 0.00 0.00 33.79 2.17
3187 3404 7.307811 GCAGGTTTTATAGCGAGGTAATTTAGG 60.308 40.741 0.00 0.00 0.00 2.69
3189 3406 7.486802 GCAGGTTTTATAGCGAGGTAATTTA 57.513 36.000 0.00 0.00 0.00 1.40
3214 3431 1.599576 GAGGAGAGGAGTGGGCAAC 59.400 63.158 0.00 0.00 0.00 4.17
3215 3432 1.613630 GGAGGAGAGGAGTGGGCAA 60.614 63.158 0.00 0.00 0.00 4.52
3223 3440 1.149782 AGGTGGTGAGGAGGAGAGGA 61.150 60.000 0.00 0.00 0.00 3.71
3225 3442 1.034838 CGAGGTGGTGAGGAGGAGAG 61.035 65.000 0.00 0.00 0.00 3.20
3250 3467 0.676151 CTGGCTCCTTGGCTGTTCTC 60.676 60.000 0.00 0.00 42.34 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.