Multiple sequence alignment - TraesCS5B01G419600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G419600 chr5B 100.000 2237 0 0 1 2237 595163418 595161182 0.000000e+00 4132.0
1 TraesCS5B01G419600 chr5B 91.063 1063 70 11 640 1694 595122542 595121497 0.000000e+00 1413.0
2 TraesCS5B01G419600 chr5B 86.466 399 43 9 1777 2164 595121313 595120915 5.710000e-116 427.0
3 TraesCS5B01G419600 chr5A 88.285 939 71 21 760 1667 605689202 605688272 0.000000e+00 1088.0
4 TraesCS5B01G419600 chr5A 87.670 884 78 13 760 1618 605366392 605365515 0.000000e+00 1000.0
5 TraesCS5B01G419600 chr5A 88.299 829 60 17 640 1446 605749665 605748852 0.000000e+00 959.0
6 TraesCS5B01G419600 chr5A 88.571 455 33 9 1136 1579 605258620 605258174 3.270000e-148 534.0
7 TraesCS5B01G419600 chr5A 80.254 709 90 27 647 1335 605346491 605345813 2.580000e-134 488.0
8 TraesCS5B01G419600 chr5A 85.227 264 21 6 1874 2119 605687589 605687326 2.850000e-64 255.0
9 TraesCS5B01G419600 chr5D 89.728 808 60 11 760 1551 483825377 483826177 0.000000e+00 1011.0
10 TraesCS5B01G419600 chr5D 86.245 807 65 16 760 1551 483985847 483986622 0.000000e+00 833.0
11 TraesCS5B01G419600 chr5D 86.190 601 78 4 846 1443 483970688 483970090 0.000000e+00 645.0
12 TraesCS5B01G419600 chr5D 87.446 231 20 3 2015 2237 484120829 484120600 7.930000e-65 257.0
13 TraesCS5B01G419600 chr5D 96.875 32 1 0 1313 1344 483825987 483826018 1.000000e-03 54.7
14 TraesCS5B01G419600 chr5D 96.875 32 1 0 1313 1344 483970166 483970135 1.000000e-03 54.7
15 TraesCS5B01G419600 chr1B 84.295 312 35 8 1 305 523303516 523303820 2.170000e-75 292.0
16 TraesCS5B01G419600 chr2B 84.365 307 35 8 7 305 107581470 107581169 2.810000e-74 289.0
17 TraesCS5B01G419600 chr2B 80.831 313 43 13 7 305 32595229 32594920 1.730000e-56 230.0
18 TraesCS5B01G419600 chr2B 82.657 271 34 11 7 270 4609049 4608785 6.210000e-56 228.0
19 TraesCS5B01G419600 chr6D 88.000 225 22 5 83 305 367077644 367077865 6.130000e-66 261.0
20 TraesCS5B01G419600 chr6D 87.556 225 25 3 83 305 367123244 367123467 7.930000e-65 257.0
21 TraesCS5B01G419600 chr7D 87.611 226 21 7 83 305 70095615 70095836 2.850000e-64 255.0
22 TraesCS5B01G419600 chr7D 81.447 318 42 10 1 310 524245543 524245851 6.170000e-61 244.0
23 TraesCS5B01G419600 chr2A 81.613 310 37 11 15 312 746235995 746236296 2.870000e-59 239.0
24 TraesCS5B01G419600 chr4A 77.961 304 47 12 1 291 688530081 688530377 2.950000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G419600 chr5B 595161182 595163418 2236 True 4132.00 4132 100.0000 1 2237 1 chr5B.!!$R1 2236
1 TraesCS5B01G419600 chr5B 595120915 595122542 1627 True 920.00 1413 88.7645 640 2164 2 chr5B.!!$R2 1524
2 TraesCS5B01G419600 chr5A 605365515 605366392 877 True 1000.00 1000 87.6700 760 1618 1 chr5A.!!$R3 858
3 TraesCS5B01G419600 chr5A 605748852 605749665 813 True 959.00 959 88.2990 640 1446 1 chr5A.!!$R4 806
4 TraesCS5B01G419600 chr5A 605687326 605689202 1876 True 671.50 1088 86.7560 760 2119 2 chr5A.!!$R5 1359
5 TraesCS5B01G419600 chr5A 605345813 605346491 678 True 488.00 488 80.2540 647 1335 1 chr5A.!!$R2 688
6 TraesCS5B01G419600 chr5D 483985847 483986622 775 False 833.00 833 86.2450 760 1551 1 chr5D.!!$F1 791
7 TraesCS5B01G419600 chr5D 483825377 483826177 800 False 532.85 1011 93.3015 760 1551 2 chr5D.!!$F2 791
8 TraesCS5B01G419600 chr5D 483970090 483970688 598 True 349.85 645 91.5325 846 1443 2 chr5D.!!$R2 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
519 520 0.033366 ACAAAAGTTTGGGATGCGGC 59.967 50.0 8.55 0.0 42.34 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1732 2266 0.546267 ACACACAGAGATGGGAGGCT 60.546 55.0 0.0 0.0 0.0 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.398170 GTATGTAGCAGCATAAAATATGTTTGG 57.602 33.333 0.00 0.00 33.67 3.28
32 33 7.637631 TGTAGCAGCATAAAATATGTTTGGA 57.362 32.000 0.00 0.00 0.00 3.53
33 34 8.060931 TGTAGCAGCATAAAATATGTTTGGAA 57.939 30.769 0.00 0.00 0.00 3.53
34 35 8.694540 TGTAGCAGCATAAAATATGTTTGGAAT 58.305 29.630 0.00 0.00 0.00 3.01
35 36 8.971321 GTAGCAGCATAAAATATGTTTGGAATG 58.029 33.333 0.00 0.00 0.00 2.67
36 37 7.784037 AGCAGCATAAAATATGTTTGGAATGA 58.216 30.769 0.00 0.00 0.00 2.57
37 38 8.259411 AGCAGCATAAAATATGTTTGGAATGAA 58.741 29.630 0.00 0.00 0.00 2.57
38 39 8.881743 GCAGCATAAAATATGTTTGGAATGAAA 58.118 29.630 8.45 0.00 0.00 2.69
88 89 8.383374 AGGAAAAATATACCCTTAAAAACCCC 57.617 34.615 0.00 0.00 0.00 4.95
89 90 7.962574 AGGAAAAATATACCCTTAAAAACCCCA 59.037 33.333 0.00 0.00 0.00 4.96
90 91 8.604184 GGAAAAATATACCCTTAAAAACCCCAA 58.396 33.333 0.00 0.00 0.00 4.12
92 93 9.796180 AAAAATATACCCTTAAAAACCCCAAAC 57.204 29.630 0.00 0.00 0.00 2.93
93 94 7.499200 AATATACCCTTAAAAACCCCAAACC 57.501 36.000 0.00 0.00 0.00 3.27
94 95 3.424724 ACCCTTAAAAACCCCAAACCT 57.575 42.857 0.00 0.00 0.00 3.50
95 96 3.738434 ACCCTTAAAAACCCCAAACCTT 58.262 40.909 0.00 0.00 0.00 3.50
96 97 4.113085 ACCCTTAAAAACCCCAAACCTTT 58.887 39.130 0.00 0.00 0.00 3.11
97 98 4.540906 ACCCTTAAAAACCCCAAACCTTTT 59.459 37.500 0.00 0.00 0.00 2.27
98 99 5.730207 ACCCTTAAAAACCCCAAACCTTTTA 59.270 36.000 0.00 0.00 0.00 1.52
99 100 6.126710 ACCCTTAAAAACCCCAAACCTTTTAG 60.127 38.462 0.00 0.00 0.00 1.85
100 101 6.126710 CCCTTAAAAACCCCAAACCTTTTAGT 60.127 38.462 0.00 0.00 0.00 2.24
101 102 6.987992 CCTTAAAAACCCCAAACCTTTTAGTC 59.012 38.462 0.00 0.00 0.00 2.59
102 103 5.362105 AAAAACCCCAAACCTTTTAGTCC 57.638 39.130 0.00 0.00 0.00 3.85
103 104 2.688902 ACCCCAAACCTTTTAGTCCC 57.311 50.000 0.00 0.00 0.00 4.46
104 105 1.202964 ACCCCAAACCTTTTAGTCCCG 60.203 52.381 0.00 0.00 0.00 5.14
105 106 1.541379 CCCAAACCTTTTAGTCCCGG 58.459 55.000 0.00 0.00 0.00 5.73
106 107 1.202964 CCCAAACCTTTTAGTCCCGGT 60.203 52.381 0.00 0.00 0.00 5.28
107 108 2.589720 CCAAACCTTTTAGTCCCGGTT 58.410 47.619 0.00 0.00 41.25 4.44
108 109 2.295070 CCAAACCTTTTAGTCCCGGTTG 59.705 50.000 0.00 0.00 39.53 3.77
109 110 2.281539 AACCTTTTAGTCCCGGTTGG 57.718 50.000 0.00 0.00 38.27 3.77
110 111 1.142936 ACCTTTTAGTCCCGGTTGGT 58.857 50.000 0.00 0.00 34.77 3.67
111 112 1.202842 ACCTTTTAGTCCCGGTTGGTG 60.203 52.381 0.00 0.00 34.77 4.17
112 113 1.202842 CCTTTTAGTCCCGGTTGGTGT 60.203 52.381 0.00 0.00 34.77 4.16
113 114 2.038820 CCTTTTAGTCCCGGTTGGTGTA 59.961 50.000 0.00 0.00 34.77 2.90
114 115 3.496515 CCTTTTAGTCCCGGTTGGTGTAA 60.497 47.826 0.00 0.00 34.77 2.41
115 116 2.837532 TTAGTCCCGGTTGGTGTAAC 57.162 50.000 0.00 0.00 38.60 2.50
128 129 2.837532 GTGTAACCAACCGGGACTAA 57.162 50.000 6.32 0.00 41.15 2.24
129 130 3.124578 GTGTAACCAACCGGGACTAAA 57.875 47.619 6.32 0.00 41.15 1.85
130 131 3.069289 GTGTAACCAACCGGGACTAAAG 58.931 50.000 6.32 0.00 41.15 1.85
131 132 2.079158 GTAACCAACCGGGACTAAAGC 58.921 52.381 6.32 0.00 41.15 3.51
132 133 0.251033 AACCAACCGGGACTAAAGCC 60.251 55.000 6.32 0.00 41.15 4.35
133 134 1.378119 CCAACCGGGACTAAAGCCC 60.378 63.158 6.32 0.00 42.41 5.19
134 135 1.378119 CAACCGGGACTAAAGCCCC 60.378 63.158 6.32 0.00 42.92 5.80
135 136 2.609534 AACCGGGACTAAAGCCCCC 61.610 63.158 6.32 0.00 42.92 5.40
169 170 2.052237 GCTCGTGCCACGTTGTTG 60.052 61.111 17.83 5.07 43.14 3.33
170 171 2.631428 CTCGTGCCACGTTGTTGG 59.369 61.111 17.83 0.00 43.14 3.77
178 179 2.050477 CCACGTTGTTGGCTTTGATC 57.950 50.000 0.00 0.00 0.00 2.92
179 180 1.335872 CCACGTTGTTGGCTTTGATCC 60.336 52.381 0.00 0.00 0.00 3.36
180 181 0.958822 ACGTTGTTGGCTTTGATCCC 59.041 50.000 0.00 0.00 0.00 3.85
181 182 0.109781 CGTTGTTGGCTTTGATCCCG 60.110 55.000 0.00 0.00 0.00 5.14
182 183 0.243636 GTTGTTGGCTTTGATCCCGG 59.756 55.000 0.00 0.00 0.00 5.73
183 184 0.897863 TTGTTGGCTTTGATCCCGGG 60.898 55.000 16.85 16.85 0.00 5.73
184 185 1.304134 GTTGGCTTTGATCCCGGGT 60.304 57.895 22.86 8.01 0.00 5.28
185 186 0.898326 GTTGGCTTTGATCCCGGGTT 60.898 55.000 22.86 13.38 0.00 4.11
186 187 0.897863 TTGGCTTTGATCCCGGGTTG 60.898 55.000 22.86 0.77 0.00 3.77
187 188 1.304134 GGCTTTGATCCCGGGTTGT 60.304 57.895 22.86 8.07 0.00 3.32
188 189 1.595093 GGCTTTGATCCCGGGTTGTG 61.595 60.000 22.86 8.41 0.00 3.33
189 190 0.608035 GCTTTGATCCCGGGTTGTGA 60.608 55.000 22.86 0.00 0.00 3.58
190 191 1.165270 CTTTGATCCCGGGTTGTGAC 58.835 55.000 22.86 7.33 0.00 3.67
191 192 0.604243 TTTGATCCCGGGTTGTGACG 60.604 55.000 22.86 0.00 0.00 4.35
192 193 1.473497 TTGATCCCGGGTTGTGACGA 61.473 55.000 22.86 0.00 0.00 4.20
193 194 1.294138 GATCCCGGGTTGTGACGAA 59.706 57.895 22.86 0.00 0.00 3.85
194 195 1.004200 ATCCCGGGTTGTGACGAAC 60.004 57.895 22.86 0.00 0.00 3.95
195 196 2.459202 ATCCCGGGTTGTGACGAACC 62.459 60.000 22.86 0.00 44.22 3.62
196 197 3.039588 CCGGGTTGTGACGAACCG 61.040 66.667 22.17 22.17 45.67 4.44
197 198 2.027897 CGGGTTGTGACGAACCGA 59.972 61.111 24.61 0.00 45.67 4.69
198 199 2.305127 CGGGTTGTGACGAACCGAC 61.305 63.158 24.61 3.77 45.67 4.79
199 200 1.227321 GGGTTGTGACGAACCGACA 60.227 57.895 0.00 0.00 45.67 4.35
206 207 3.765505 GTGACGAACCGACACTAAAAG 57.234 47.619 12.91 0.00 45.45 2.27
207 208 2.473984 GTGACGAACCGACACTAAAAGG 59.526 50.000 12.91 0.00 45.45 3.11
208 209 2.101249 TGACGAACCGACACTAAAAGGT 59.899 45.455 0.00 0.00 38.88 3.50
209 210 2.473984 GACGAACCGACACTAAAAGGTG 59.526 50.000 0.00 0.00 42.34 4.00
210 211 1.796459 CGAACCGACACTAAAAGGTGG 59.204 52.381 0.00 0.00 41.09 4.61
211 212 2.804212 CGAACCGACACTAAAAGGTGGT 60.804 50.000 0.00 0.00 41.09 4.16
212 213 2.249844 ACCGACACTAAAAGGTGGTG 57.750 50.000 0.00 0.00 41.09 4.17
213 214 1.202722 ACCGACACTAAAAGGTGGTGG 60.203 52.381 0.00 0.00 41.09 4.61
214 215 1.519408 CGACACTAAAAGGTGGTGGG 58.481 55.000 0.00 0.00 41.09 4.61
215 216 1.880646 CGACACTAAAAGGTGGTGGGG 60.881 57.143 0.00 0.00 41.09 4.96
216 217 0.481128 ACACTAAAAGGTGGTGGGGG 59.519 55.000 0.00 0.00 41.09 5.40
232 233 1.592948 GGGGGCTTTAGTCCTTACCT 58.407 55.000 0.00 0.00 40.38 3.08
233 234 1.921049 GGGGGCTTTAGTCCTTACCTT 59.079 52.381 0.00 0.00 40.38 3.50
234 235 2.310945 GGGGGCTTTAGTCCTTACCTTT 59.689 50.000 0.00 0.00 40.38 3.11
235 236 3.245514 GGGGGCTTTAGTCCTTACCTTTT 60.246 47.826 0.00 0.00 40.38 2.27
236 237 4.018141 GGGGGCTTTAGTCCTTACCTTTTA 60.018 45.833 0.00 0.00 40.38 1.52
237 238 5.191426 GGGGCTTTAGTCCTTACCTTTTAG 58.809 45.833 0.00 0.00 40.38 1.85
238 239 5.280882 GGGGCTTTAGTCCTTACCTTTTAGT 60.281 44.000 0.00 0.00 40.38 2.24
239 240 5.646793 GGGCTTTAGTCCTTACCTTTTAGTG 59.353 44.000 0.00 0.00 36.72 2.74
240 241 5.123502 GGCTTTAGTCCTTACCTTTTAGTGC 59.876 44.000 0.00 0.00 0.00 4.40
241 242 5.123502 GCTTTAGTCCTTACCTTTTAGTGCC 59.876 44.000 0.00 0.00 0.00 5.01
242 243 5.829062 TTAGTCCTTACCTTTTAGTGCCA 57.171 39.130 0.00 0.00 0.00 4.92
243 244 4.287766 AGTCCTTACCTTTTAGTGCCAG 57.712 45.455 0.00 0.00 0.00 4.85
244 245 3.651423 AGTCCTTACCTTTTAGTGCCAGT 59.349 43.478 0.00 0.00 0.00 4.00
245 246 4.104261 AGTCCTTACCTTTTAGTGCCAGTT 59.896 41.667 0.00 0.00 0.00 3.16
246 247 4.215613 GTCCTTACCTTTTAGTGCCAGTTG 59.784 45.833 0.00 0.00 0.00 3.16
247 248 3.506067 CCTTACCTTTTAGTGCCAGTTGG 59.494 47.826 0.00 0.00 38.53 3.77
248 249 2.748209 ACCTTTTAGTGCCAGTTGGT 57.252 45.000 0.00 0.00 37.57 3.67
249 250 2.306847 ACCTTTTAGTGCCAGTTGGTG 58.693 47.619 0.00 0.00 37.57 4.17
250 251 2.092103 ACCTTTTAGTGCCAGTTGGTGA 60.092 45.455 0.00 0.00 37.57 4.02
251 252 2.955660 CCTTTTAGTGCCAGTTGGTGAA 59.044 45.455 0.00 0.00 37.57 3.18
252 253 3.243401 CCTTTTAGTGCCAGTTGGTGAAC 60.243 47.826 0.00 0.00 37.57 3.18
253 254 1.975660 TTAGTGCCAGTTGGTGAACC 58.024 50.000 0.00 0.00 37.57 3.62
254 255 0.840617 TAGTGCCAGTTGGTGAACCA 59.159 50.000 0.00 0.00 45.94 3.67
265 266 2.414612 TGGTGAACCAGGACTAAAGGT 58.585 47.619 0.00 0.00 42.01 3.50
266 267 2.370849 TGGTGAACCAGGACTAAAGGTC 59.629 50.000 0.00 0.00 42.01 3.85
278 279 4.492611 GACTAAAGGTCCTTACGAACTGG 58.507 47.826 4.04 0.00 37.65 4.00
279 280 2.853235 AAAGGTCCTTACGAACTGGG 57.147 50.000 4.04 0.00 37.65 4.45
280 281 2.019807 AAGGTCCTTACGAACTGGGA 57.980 50.000 0.93 0.00 37.65 4.37
281 282 1.264295 AGGTCCTTACGAACTGGGAC 58.736 55.000 0.00 0.00 45.18 4.46
282 283 1.203149 AGGTCCTTACGAACTGGGACT 60.203 52.381 10.21 0.00 45.23 3.85
283 284 2.042162 AGGTCCTTACGAACTGGGACTA 59.958 50.000 10.21 0.00 45.23 2.59
284 285 2.827921 GGTCCTTACGAACTGGGACTAA 59.172 50.000 10.21 0.00 45.23 2.24
285 286 3.259123 GGTCCTTACGAACTGGGACTAAA 59.741 47.826 10.21 0.00 45.23 1.85
286 287 4.492611 GTCCTTACGAACTGGGACTAAAG 58.507 47.826 0.00 0.00 43.30 1.85
287 288 3.056322 TCCTTACGAACTGGGACTAAAGC 60.056 47.826 0.00 0.00 0.00 3.51
288 289 3.259902 CTTACGAACTGGGACTAAAGCC 58.740 50.000 0.00 0.00 0.00 4.35
289 290 0.323957 ACGAACTGGGACTAAAGCCC 59.676 55.000 0.00 0.00 46.22 5.19
297 298 2.152016 GGGACTAAAGCCCGATTATGC 58.848 52.381 0.00 0.00 35.50 3.14
298 299 2.486548 GGGACTAAAGCCCGATTATGCA 60.487 50.000 0.00 0.00 35.50 3.96
299 300 2.548480 GGACTAAAGCCCGATTATGCAC 59.452 50.000 0.00 0.00 0.00 4.57
300 301 3.467803 GACTAAAGCCCGATTATGCACT 58.532 45.455 0.00 0.00 0.00 4.40
301 302 4.502604 GGACTAAAGCCCGATTATGCACTA 60.503 45.833 0.00 0.00 0.00 2.74
302 303 4.632153 ACTAAAGCCCGATTATGCACTAG 58.368 43.478 0.00 0.00 0.00 2.57
303 304 3.560636 AAAGCCCGATTATGCACTAGT 57.439 42.857 0.00 0.00 0.00 2.57
304 305 2.533266 AGCCCGATTATGCACTAGTG 57.467 50.000 18.93 18.93 0.00 2.74
305 306 1.070758 AGCCCGATTATGCACTAGTGG 59.929 52.381 23.95 5.41 0.00 4.00
306 307 1.202651 GCCCGATTATGCACTAGTGGT 60.203 52.381 23.95 0.00 0.00 4.16
308 309 2.483876 CCGATTATGCACTAGTGGTGG 58.516 52.381 23.95 0.00 45.44 4.61
309 310 1.867233 CGATTATGCACTAGTGGTGGC 59.133 52.381 23.95 10.35 45.44 5.01
310 311 2.741553 CGATTATGCACTAGTGGTGGCA 60.742 50.000 23.95 15.80 45.44 4.92
311 312 2.107950 TTATGCACTAGTGGTGGCAC 57.892 50.000 23.95 9.70 45.44 5.01
312 313 0.251916 TATGCACTAGTGGTGGCACC 59.748 55.000 29.75 29.75 45.44 5.01
313 314 1.492133 ATGCACTAGTGGTGGCACCT 61.492 55.000 34.69 19.97 45.44 4.00
314 315 0.834261 TGCACTAGTGGTGGCACCTA 60.834 55.000 34.69 20.02 45.44 3.08
315 316 0.323629 GCACTAGTGGTGGCACCTAA 59.676 55.000 34.69 19.64 45.44 2.69
316 317 1.271163 GCACTAGTGGTGGCACCTAAA 60.271 52.381 34.69 19.31 45.44 1.85
317 318 2.699954 CACTAGTGGTGGCACCTAAAG 58.300 52.381 34.69 27.74 41.90 1.85
318 319 2.301870 CACTAGTGGTGGCACCTAAAGA 59.698 50.000 34.69 13.93 41.90 2.52
319 320 2.302157 ACTAGTGGTGGCACCTAAAGAC 59.698 50.000 34.69 24.23 39.58 3.01
320 321 0.034896 AGTGGTGGCACCTAAAGACG 59.965 55.000 34.69 0.00 39.58 4.18
321 322 0.953960 GTGGTGGCACCTAAAGACGG 60.954 60.000 34.69 0.00 39.58 4.79
322 323 2.038837 GGTGGCACCTAAAGACGGC 61.039 63.158 29.22 0.00 34.73 5.68
323 324 2.047655 TGGCACCTAAAGACGGCG 60.048 61.111 4.80 4.80 0.00 6.46
324 325 2.263540 GGCACCTAAAGACGGCGA 59.736 61.111 16.62 0.00 0.00 5.54
325 326 1.810030 GGCACCTAAAGACGGCGAG 60.810 63.158 16.62 0.00 0.00 5.03
326 327 1.214589 GCACCTAAAGACGGCGAGA 59.785 57.895 16.62 0.00 0.00 4.04
327 328 0.802607 GCACCTAAAGACGGCGAGAG 60.803 60.000 16.62 2.51 0.00 3.20
354 355 2.104928 CGCGCAGTGGCAGATCTA 59.895 61.111 8.75 0.00 41.24 1.98
355 356 2.233654 CGCGCAGTGGCAGATCTAC 61.234 63.158 8.75 0.00 41.24 2.59
356 357 1.153568 GCGCAGTGGCAGATCTACA 60.154 57.895 0.30 0.00 41.24 2.74
357 358 0.531532 GCGCAGTGGCAGATCTACAT 60.532 55.000 0.30 0.00 41.24 2.29
358 359 1.945387 CGCAGTGGCAGATCTACATT 58.055 50.000 0.00 0.00 41.24 2.71
359 360 2.283298 CGCAGTGGCAGATCTACATTT 58.717 47.619 0.00 0.00 41.24 2.32
360 361 2.679837 CGCAGTGGCAGATCTACATTTT 59.320 45.455 0.00 0.00 41.24 1.82
361 362 3.127548 CGCAGTGGCAGATCTACATTTTT 59.872 43.478 0.00 0.00 41.24 1.94
400 401 7.925043 TTTTAACTTAATTAGACATGCGGGA 57.075 32.000 0.00 0.00 0.00 5.14
401 402 6.913873 TTAACTTAATTAGACATGCGGGAC 57.086 37.500 0.00 0.00 0.00 4.46
416 417 1.583054 GGGACGTGACTATCATTGGC 58.417 55.000 0.00 0.00 0.00 4.52
417 418 1.139058 GGGACGTGACTATCATTGGCT 59.861 52.381 0.00 0.00 0.00 4.75
418 419 2.205074 GGACGTGACTATCATTGGCTG 58.795 52.381 0.00 0.00 0.00 4.85
419 420 2.418746 GGACGTGACTATCATTGGCTGT 60.419 50.000 0.00 0.00 0.00 4.40
420 421 3.262420 GACGTGACTATCATTGGCTGTT 58.738 45.455 0.00 0.00 0.00 3.16
421 422 3.674997 ACGTGACTATCATTGGCTGTTT 58.325 40.909 0.00 0.00 0.00 2.83
422 423 4.827692 ACGTGACTATCATTGGCTGTTTA 58.172 39.130 0.00 0.00 0.00 2.01
423 424 5.242434 ACGTGACTATCATTGGCTGTTTAA 58.758 37.500 0.00 0.00 0.00 1.52
424 425 5.880332 ACGTGACTATCATTGGCTGTTTAAT 59.120 36.000 0.00 0.00 0.00 1.40
425 426 6.374333 ACGTGACTATCATTGGCTGTTTAATT 59.626 34.615 0.00 0.00 0.00 1.40
426 427 7.551262 ACGTGACTATCATTGGCTGTTTAATTA 59.449 33.333 0.00 0.00 0.00 1.40
427 428 8.394877 CGTGACTATCATTGGCTGTTTAATTAA 58.605 33.333 0.00 0.00 0.00 1.40
428 429 9.722056 GTGACTATCATTGGCTGTTTAATTAAG 57.278 33.333 0.00 0.00 0.00 1.85
429 430 9.461312 TGACTATCATTGGCTGTTTAATTAAGT 57.539 29.630 0.00 0.00 0.00 2.24
435 436 9.073475 TCATTGGCTGTTTAATTAAGTTACTGT 57.927 29.630 0.00 0.00 0.00 3.55
436 437 9.691362 CATTGGCTGTTTAATTAAGTTACTGTT 57.309 29.630 0.00 0.00 0.00 3.16
466 467 9.469807 TGTATGTTTTAACCTACTTTTGCAATG 57.530 29.630 0.00 0.00 33.10 2.82
467 468 6.836577 TGTTTTAACCTACTTTTGCAATGC 57.163 33.333 0.00 0.00 0.00 3.56
468 469 5.755861 TGTTTTAACCTACTTTTGCAATGCC 59.244 36.000 1.53 0.00 0.00 4.40
469 470 5.799827 TTTAACCTACTTTTGCAATGCCT 57.200 34.783 1.53 0.00 0.00 4.75
470 471 5.799827 TTAACCTACTTTTGCAATGCCTT 57.200 34.783 1.53 0.00 0.00 4.35
471 472 6.902771 TTAACCTACTTTTGCAATGCCTTA 57.097 33.333 1.53 0.00 0.00 2.69
472 473 7.475137 TTAACCTACTTTTGCAATGCCTTAT 57.525 32.000 1.53 0.00 0.00 1.73
473 474 6.358974 AACCTACTTTTGCAATGCCTTATT 57.641 33.333 1.53 0.00 0.00 1.40
474 475 6.358974 ACCTACTTTTGCAATGCCTTATTT 57.641 33.333 1.53 0.00 0.00 1.40
475 476 6.768483 ACCTACTTTTGCAATGCCTTATTTT 58.232 32.000 1.53 0.00 0.00 1.82
476 477 6.650390 ACCTACTTTTGCAATGCCTTATTTTG 59.350 34.615 1.53 0.00 0.00 2.44
477 478 5.945466 ACTTTTGCAATGCCTTATTTTGG 57.055 34.783 1.53 0.00 0.00 3.28
478 479 4.761227 ACTTTTGCAATGCCTTATTTTGGG 59.239 37.500 1.53 0.00 0.00 4.12
479 480 4.363991 TTTGCAATGCCTTATTTTGGGT 57.636 36.364 1.53 0.00 0.00 4.51
480 481 4.363991 TTGCAATGCCTTATTTTGGGTT 57.636 36.364 1.53 0.00 0.00 4.11
481 482 4.363991 TGCAATGCCTTATTTTGGGTTT 57.636 36.364 1.53 0.00 0.00 3.27
482 483 4.723309 TGCAATGCCTTATTTTGGGTTTT 58.277 34.783 1.53 0.00 0.00 2.43
483 484 4.759183 TGCAATGCCTTATTTTGGGTTTTC 59.241 37.500 1.53 0.00 0.00 2.29
484 485 5.003160 GCAATGCCTTATTTTGGGTTTTCT 58.997 37.500 0.00 0.00 0.00 2.52
485 486 6.169800 GCAATGCCTTATTTTGGGTTTTCTA 58.830 36.000 0.00 0.00 0.00 2.10
486 487 6.652900 GCAATGCCTTATTTTGGGTTTTCTAA 59.347 34.615 0.00 0.00 0.00 2.10
487 488 7.148423 GCAATGCCTTATTTTGGGTTTTCTAAG 60.148 37.037 0.00 0.00 0.00 2.18
488 489 6.987403 TGCCTTATTTTGGGTTTTCTAAGT 57.013 33.333 0.00 0.00 0.00 2.24
489 490 6.754193 TGCCTTATTTTGGGTTTTCTAAGTG 58.246 36.000 0.00 0.00 0.00 3.16
490 491 5.637810 GCCTTATTTTGGGTTTTCTAAGTGC 59.362 40.000 0.00 0.00 0.00 4.40
491 492 6.740122 GCCTTATTTTGGGTTTTCTAAGTGCA 60.740 38.462 0.00 0.00 0.00 4.57
492 493 7.213678 CCTTATTTTGGGTTTTCTAAGTGCAA 58.786 34.615 0.00 0.00 0.00 4.08
493 494 7.877612 CCTTATTTTGGGTTTTCTAAGTGCAAT 59.122 33.333 0.00 0.00 0.00 3.56
494 495 9.921637 CTTATTTTGGGTTTTCTAAGTGCAATA 57.078 29.630 0.00 0.00 0.00 1.90
495 496 9.699703 TTATTTTGGGTTTTCTAAGTGCAATAC 57.300 29.630 0.00 0.00 0.00 1.89
496 497 5.365403 TTGGGTTTTCTAAGTGCAATACG 57.635 39.130 0.00 0.00 0.00 3.06
497 498 3.754323 TGGGTTTTCTAAGTGCAATACGG 59.246 43.478 0.00 0.00 0.00 4.02
498 499 4.004982 GGGTTTTCTAAGTGCAATACGGA 58.995 43.478 0.00 0.00 0.00 4.69
499 500 4.142752 GGGTTTTCTAAGTGCAATACGGAC 60.143 45.833 0.00 0.00 35.88 4.79
500 501 4.453136 GGTTTTCTAAGTGCAATACGGACA 59.547 41.667 0.00 0.00 38.70 4.02
501 502 5.379827 GTTTTCTAAGTGCAATACGGACAC 58.620 41.667 0.00 0.00 38.70 3.67
502 503 3.945981 TCTAAGTGCAATACGGACACA 57.054 42.857 0.00 0.00 38.70 3.72
503 504 4.260139 TCTAAGTGCAATACGGACACAA 57.740 40.909 0.00 0.00 38.70 3.33
504 505 4.633175 TCTAAGTGCAATACGGACACAAA 58.367 39.130 0.00 0.00 38.70 2.83
505 506 5.057819 TCTAAGTGCAATACGGACACAAAA 58.942 37.500 0.00 0.00 38.70 2.44
506 507 3.896648 AGTGCAATACGGACACAAAAG 57.103 42.857 0.00 0.00 38.70 2.27
507 508 3.211045 AGTGCAATACGGACACAAAAGT 58.789 40.909 0.00 0.00 38.70 2.66
508 509 3.630312 AGTGCAATACGGACACAAAAGTT 59.370 39.130 0.00 0.00 38.70 2.66
509 510 4.097286 AGTGCAATACGGACACAAAAGTTT 59.903 37.500 0.00 0.00 38.70 2.66
510 511 4.206200 GTGCAATACGGACACAAAAGTTTG 59.794 41.667 2.22 2.22 43.62 2.93
511 512 3.733727 GCAATACGGACACAAAAGTTTGG 59.266 43.478 8.55 0.00 42.34 3.28
512 513 4.295051 CAATACGGACACAAAAGTTTGGG 58.705 43.478 4.47 4.47 46.76 4.12
513 514 2.131776 ACGGACACAAAAGTTTGGGA 57.868 45.000 12.86 0.00 44.22 4.37
514 515 2.661718 ACGGACACAAAAGTTTGGGAT 58.338 42.857 12.86 0.00 44.22 3.85
515 516 2.360801 ACGGACACAAAAGTTTGGGATG 59.639 45.455 12.86 2.68 44.22 3.51
516 517 2.754472 GGACACAAAAGTTTGGGATGC 58.246 47.619 12.86 2.22 44.22 3.91
517 518 2.393764 GACACAAAAGTTTGGGATGCG 58.606 47.619 12.86 0.00 44.22 4.73
518 519 1.068434 ACACAAAAGTTTGGGATGCGG 59.932 47.619 12.86 0.00 44.22 5.69
519 520 0.033366 ACAAAAGTTTGGGATGCGGC 59.967 50.000 8.55 0.00 42.34 6.53
520 521 0.670239 CAAAAGTTTGGGATGCGGCC 60.670 55.000 0.00 0.00 34.59 6.13
521 522 2.153547 AAAAGTTTGGGATGCGGCCG 62.154 55.000 24.05 24.05 0.00 6.13
534 535 4.036804 GGCCGCGTGTTGAATGCA 62.037 61.111 4.92 0.00 41.23 3.96
535 536 2.800746 GCCGCGTGTTGAATGCAC 60.801 61.111 4.92 0.00 41.23 4.57
536 537 2.126888 CCGCGTGTTGAATGCACC 60.127 61.111 4.92 0.00 41.23 5.01
537 538 2.499520 CGCGTGTTGAATGCACCG 60.500 61.111 0.00 0.00 41.23 4.94
538 539 2.942879 GCGTGTTGAATGCACCGA 59.057 55.556 0.00 0.00 40.81 4.69
539 540 1.440353 GCGTGTTGAATGCACCGAC 60.440 57.895 0.00 0.00 40.81 4.79
540 541 1.206578 CGTGTTGAATGCACCGACC 59.793 57.895 0.00 0.00 33.61 4.79
541 542 1.206578 GTGTTGAATGCACCGACCG 59.793 57.895 0.00 0.00 0.00 4.79
542 543 1.963855 TGTTGAATGCACCGACCGG 60.964 57.895 6.94 6.94 42.03 5.28
552 553 3.776781 CCGACCGGTGTATGGCCA 61.777 66.667 14.63 8.56 0.00 5.36
553 554 2.266372 CGACCGGTGTATGGCCAA 59.734 61.111 14.63 0.00 0.00 4.52
554 555 1.376166 CGACCGGTGTATGGCCAAA 60.376 57.895 14.63 0.00 0.00 3.28
555 556 0.956410 CGACCGGTGTATGGCCAAAA 60.956 55.000 14.63 0.00 0.00 2.44
556 557 0.524414 GACCGGTGTATGGCCAAAAC 59.476 55.000 14.63 12.50 0.00 2.43
557 558 0.896479 ACCGGTGTATGGCCAAAACC 60.896 55.000 10.96 16.97 0.00 3.27
558 559 1.504446 CGGTGTATGGCCAAAACCG 59.496 57.895 30.78 30.78 46.69 4.44
559 560 1.887301 GGTGTATGGCCAAAACCGG 59.113 57.895 10.96 0.00 0.00 5.28
560 561 0.609681 GGTGTATGGCCAAAACCGGA 60.610 55.000 10.96 0.00 0.00 5.14
561 562 0.524414 GTGTATGGCCAAAACCGGAC 59.476 55.000 10.96 2.09 33.00 4.79
564 565 2.275748 TGGCCAAAACCGGACACA 59.724 55.556 9.46 0.00 40.00 3.72
565 566 1.152652 TGGCCAAAACCGGACACAT 60.153 52.632 9.46 0.00 40.00 3.21
566 567 1.288752 GGCCAAAACCGGACACATG 59.711 57.895 9.46 0.00 32.44 3.21
567 568 1.372872 GCCAAAACCGGACACATGC 60.373 57.895 9.46 0.00 0.00 4.06
568 569 1.081509 CCAAAACCGGACACATGCG 60.082 57.895 9.46 0.00 39.79 4.73
569 570 1.652012 CAAAACCGGACACATGCGT 59.348 52.632 9.46 0.00 38.12 5.24
570 571 0.385473 CAAAACCGGACACATGCGTC 60.385 55.000 9.46 5.25 38.12 5.19
578 579 1.339711 GACACATGCGTCCATTTTGC 58.660 50.000 2.26 0.00 0.00 3.68
579 580 0.038343 ACACATGCGTCCATTTTGCC 60.038 50.000 0.00 0.00 0.00 4.52
580 581 0.038435 CACATGCGTCCATTTTGCCA 60.038 50.000 0.00 0.00 0.00 4.92
581 582 0.678395 ACATGCGTCCATTTTGCCAA 59.322 45.000 0.00 0.00 0.00 4.52
582 583 1.275856 ACATGCGTCCATTTTGCCAAT 59.724 42.857 0.00 0.00 0.00 3.16
583 584 1.928503 CATGCGTCCATTTTGCCAATC 59.071 47.619 0.00 0.00 0.00 2.67
584 585 1.255882 TGCGTCCATTTTGCCAATCT 58.744 45.000 0.00 0.00 0.00 2.40
585 586 2.441410 TGCGTCCATTTTGCCAATCTA 58.559 42.857 0.00 0.00 0.00 1.98
586 587 2.822561 TGCGTCCATTTTGCCAATCTAA 59.177 40.909 0.00 0.00 0.00 2.10
587 588 3.446873 TGCGTCCATTTTGCCAATCTAAT 59.553 39.130 0.00 0.00 0.00 1.73
588 589 4.081752 TGCGTCCATTTTGCCAATCTAATT 60.082 37.500 0.00 0.00 0.00 1.40
589 590 4.268405 GCGTCCATTTTGCCAATCTAATTG 59.732 41.667 0.00 0.00 39.94 2.32
613 614 8.648557 TGGATAGAATTCTGATAAAACAGACG 57.351 34.615 18.47 0.00 44.94 4.18
614 615 8.258007 TGGATAGAATTCTGATAAAACAGACGT 58.742 33.333 18.47 0.00 44.94 4.34
615 616 8.756864 GGATAGAATTCTGATAAAACAGACGTC 58.243 37.037 18.47 7.70 44.94 4.34
616 617 6.969828 AGAATTCTGATAAAACAGACGTCC 57.030 37.500 13.01 0.00 44.94 4.79
617 618 5.577164 AGAATTCTGATAAAACAGACGTCCG 59.423 40.000 13.01 4.15 44.94 4.79
618 619 3.928727 TCTGATAAAACAGACGTCCGT 57.071 42.857 13.01 4.97 41.21 4.69
619 620 4.247267 TCTGATAAAACAGACGTCCGTT 57.753 40.909 13.01 12.12 41.21 4.44
620 621 4.624015 TCTGATAAAACAGACGTCCGTTT 58.376 39.130 21.31 21.31 41.21 3.60
621 622 4.446385 TCTGATAAAACAGACGTCCGTTTG 59.554 41.667 26.05 15.32 41.21 2.93
622 623 4.370049 TGATAAAACAGACGTCCGTTTGA 58.630 39.130 26.05 20.76 35.57 2.69
623 624 4.446385 TGATAAAACAGACGTCCGTTTGAG 59.554 41.667 26.05 5.70 35.57 3.02
624 625 2.589798 AAACAGACGTCCGTTTGAGA 57.410 45.000 25.06 0.00 34.16 3.27
625 626 2.814280 AACAGACGTCCGTTTGAGAT 57.186 45.000 13.01 1.02 34.76 2.75
626 627 2.349297 ACAGACGTCCGTTTGAGATC 57.651 50.000 13.01 0.00 34.76 2.75
627 628 1.260206 CAGACGTCCGTTTGAGATCG 58.740 55.000 13.01 0.00 32.75 3.69
628 629 1.135774 CAGACGTCCGTTTGAGATCGA 60.136 52.381 13.01 0.00 32.75 3.59
629 630 1.135746 AGACGTCCGTTTGAGATCGAC 60.136 52.381 13.01 0.00 0.00 4.20
630 631 0.594602 ACGTCCGTTTGAGATCGACA 59.405 50.000 0.00 0.00 0.00 4.35
631 632 1.001048 ACGTCCGTTTGAGATCGACAA 60.001 47.619 0.00 4.70 0.00 3.18
632 633 1.649171 CGTCCGTTTGAGATCGACAAG 59.351 52.381 8.01 0.49 0.00 3.16
633 634 1.390463 GTCCGTTTGAGATCGACAAGC 59.610 52.381 10.57 10.57 0.00 4.01
634 635 1.272490 TCCGTTTGAGATCGACAAGCT 59.728 47.619 15.55 0.00 0.00 3.74
635 636 1.656095 CCGTTTGAGATCGACAAGCTC 59.344 52.381 15.55 0.00 40.96 4.09
666 670 2.032620 AGAGACCAGTCTGAACACGTT 58.967 47.619 4.74 0.00 40.61 3.99
685 689 3.738281 CGTTCTTGGCTATCCTCGATGTT 60.738 47.826 0.00 0.00 0.00 2.71
686 690 4.192317 GTTCTTGGCTATCCTCGATGTTT 58.808 43.478 0.00 0.00 0.00 2.83
687 691 4.060038 TCTTGGCTATCCTCGATGTTTC 57.940 45.455 0.00 0.00 0.00 2.78
689 693 3.179443 TGGCTATCCTCGATGTTTCAC 57.821 47.619 0.00 0.00 0.00 3.18
694 698 2.347697 TCCTCGATGTTTCACAGTCG 57.652 50.000 0.00 0.00 33.58 4.18
701 705 1.593209 GTTTCACAGTCGACGGGCA 60.593 57.895 19.84 2.77 0.00 5.36
703 707 2.299503 TTTCACAGTCGACGGGCACA 62.300 55.000 19.84 0.00 0.00 4.57
768 778 1.074752 GGAGAGTGAGAAAAGCTGCG 58.925 55.000 0.00 0.00 0.00 5.18
797 811 0.248539 CTCCTAGTAACCGACGCTGC 60.249 60.000 0.00 0.00 0.00 5.25
819 833 0.110486 ATCAGCCAACAAAGGACGGT 59.890 50.000 0.00 0.00 0.00 4.83
841 861 0.251121 TGTCCGTGATGCAACCCATT 60.251 50.000 0.00 0.00 33.29 3.16
845 865 2.092699 TCCGTGATGCAACCCATTATCA 60.093 45.455 0.00 0.00 33.29 2.15
890 916 2.104967 CTACCCGTCATCTTACCACCA 58.895 52.381 0.00 0.00 0.00 4.17
895 922 2.618053 CGTCATCTTACCACCACTTCC 58.382 52.381 0.00 0.00 0.00 3.46
973 1012 0.322816 ATTCATCAGCCACAAGCCGT 60.323 50.000 0.00 0.00 45.47 5.68
1017 1056 1.142688 AAATGGGGAGGAGTGTGCCT 61.143 55.000 0.00 0.00 42.17 4.75
1230 1271 3.041940 GTCCAGACGCCCGTTGTG 61.042 66.667 0.00 0.00 0.00 3.33
1379 1441 6.686126 GCAGTGGGGTGCATATGAATAAAATT 60.686 38.462 6.97 0.00 43.41 1.82
1413 1475 2.097466 GCAGGTTTCATTACGTGGATGG 59.903 50.000 0.00 0.00 35.15 3.51
1486 1560 6.707290 ACATGTAGCATAGGTTCAGTTGTTA 58.293 36.000 0.00 0.00 0.00 2.41
1579 1653 8.668510 ACTAATTTTAGAATGATCGAGCATGT 57.331 30.769 18.20 10.35 34.84 3.21
1732 2266 1.068434 GCAACTTTTTGGGTGCAGCTA 59.932 47.619 16.65 6.91 32.81 3.32
1735 2269 0.244721 CTTTTTGGGTGCAGCTAGCC 59.755 55.000 16.65 0.00 44.83 3.93
1749 2294 1.786937 CTAGCCTCCCATCTCTGTGT 58.213 55.000 0.00 0.00 0.00 3.72
1750 2295 1.411977 CTAGCCTCCCATCTCTGTGTG 59.588 57.143 0.00 0.00 0.00 3.82
1751 2296 0.546267 AGCCTCCCATCTCTGTGTGT 60.546 55.000 0.00 0.00 0.00 3.72
1752 2297 1.195115 GCCTCCCATCTCTGTGTGTA 58.805 55.000 0.00 0.00 0.00 2.90
1753 2298 1.765314 GCCTCCCATCTCTGTGTGTAT 59.235 52.381 0.00 0.00 0.00 2.29
1754 2299 2.484417 GCCTCCCATCTCTGTGTGTATG 60.484 54.545 0.00 0.00 0.00 2.39
1755 2300 2.484417 CCTCCCATCTCTGTGTGTATGC 60.484 54.545 0.00 0.00 0.00 3.14
1756 2301 2.433604 CTCCCATCTCTGTGTGTATGCT 59.566 50.000 0.00 0.00 0.00 3.79
1757 2302 2.840038 TCCCATCTCTGTGTGTATGCTT 59.160 45.455 0.00 0.00 0.00 3.91
1758 2303 3.264193 TCCCATCTCTGTGTGTATGCTTT 59.736 43.478 0.00 0.00 0.00 3.51
1817 2429 4.827481 GCAAGCCATTCATGCCAG 57.173 55.556 0.00 0.00 33.57 4.85
1821 2433 2.872842 GCAAGCCATTCATGCCAGTTTT 60.873 45.455 0.00 0.00 33.57 2.43
1837 2449 5.623673 GCCAGTTTTACTGTGAATGTTAACG 59.376 40.000 0.26 0.00 44.50 3.18
1840 2452 7.744715 CCAGTTTTACTGTGAATGTTAACGATC 59.255 37.037 0.26 2.48 44.50 3.69
1857 2469 3.186909 CGATCTTTTCACGATGCCACTA 58.813 45.455 0.00 0.00 0.00 2.74
1867 2479 2.429610 ACGATGCCACTATTACCGAAGT 59.570 45.455 0.00 0.00 0.00 3.01
1899 2511 3.580731 TGCATCACATTTGCATCAACAG 58.419 40.909 0.00 0.00 44.73 3.16
1953 2565 2.991250 ACGAGGCTAAAATGTGCTGAT 58.009 42.857 0.00 0.00 0.00 2.90
1973 2585 5.954757 TGATTTGGGTTAAGGTCCTAAACA 58.045 37.500 0.00 0.00 38.02 2.83
1977 2589 4.668636 TGGGTTAAGGTCCTAAACATTGG 58.331 43.478 0.00 0.00 33.18 3.16
1983 2595 8.896744 GGTTAAGGTCCTAAACATTGGTAATAC 58.103 37.037 0.00 0.00 33.18 1.89
1990 2602 7.608761 GTCCTAAACATTGGTAATACAAGGTCA 59.391 37.037 0.00 0.00 43.63 4.02
1992 2604 8.405531 CCTAAACATTGGTAATACAAGGTCATG 58.594 37.037 0.00 0.00 43.63 3.07
1999 2611 6.726379 TGGTAATACAAGGTCATGAAATGGA 58.274 36.000 0.00 0.00 46.73 3.41
2001 2613 7.838696 TGGTAATACAAGGTCATGAAATGGATT 59.161 33.333 14.88 14.88 46.73 3.01
2002 2614 9.349713 GGTAATACAAGGTCATGAAATGGATTA 57.650 33.333 13.43 13.43 46.73 1.75
2006 2618 6.256053 ACAAGGTCATGAAATGGATTAAGGT 58.744 36.000 0.00 0.00 46.73 3.50
2007 2619 6.378280 ACAAGGTCATGAAATGGATTAAGGTC 59.622 38.462 0.00 0.00 46.73 3.85
2008 2620 5.449553 AGGTCATGAAATGGATTAAGGTCC 58.550 41.667 0.00 0.00 46.73 4.46
2009 2621 5.194537 AGGTCATGAAATGGATTAAGGTCCT 59.805 40.000 0.00 0.00 46.73 3.85
2010 2622 6.389869 AGGTCATGAAATGGATTAAGGTCCTA 59.610 38.462 0.00 0.00 46.73 2.94
2011 2623 7.060421 GGTCATGAAATGGATTAAGGTCCTAA 58.940 38.462 0.00 0.00 46.73 2.69
2012 2624 7.559897 GGTCATGAAATGGATTAAGGTCCTAAA 59.440 37.037 0.00 0.00 46.73 1.85
2013 2625 8.406297 GTCATGAAATGGATTAAGGTCCTAAAC 58.594 37.037 0.00 0.00 46.73 2.01
2031 2655 6.380274 TCCTAAACATCGAATTCTAGACAGGT 59.620 38.462 3.52 0.00 0.00 4.00
2120 2750 6.657541 TGTGGTGAAGTTACTTTCAAGTCTTT 59.342 34.615 0.00 0.00 38.69 2.52
2123 2753 6.542735 GGTGAAGTTACTTTCAAGTCTTTCCT 59.457 38.462 0.00 0.00 38.69 3.36
2130 2760 5.385198 ACTTTCAAGTCTTTCCTTGCCATA 58.615 37.500 0.00 0.00 41.29 2.74
2132 2762 6.494835 ACTTTCAAGTCTTTCCTTGCCATATT 59.505 34.615 0.00 0.00 41.29 1.28
2159 2789 5.585390 GGCTTGAAGTACAATCCAATGATG 58.415 41.667 0.00 0.00 42.36 3.07
2164 2794 6.244654 TGAAGTACAATCCAATGATGAACCA 58.755 36.000 0.00 0.00 0.00 3.67
2165 2795 6.891361 TGAAGTACAATCCAATGATGAACCAT 59.109 34.615 0.00 0.00 0.00 3.55
2166 2796 6.704289 AGTACAATCCAATGATGAACCATG 57.296 37.500 0.00 0.00 0.00 3.66
2167 2797 6.425735 AGTACAATCCAATGATGAACCATGA 58.574 36.000 0.00 0.00 0.00 3.07
2168 2798 7.064866 AGTACAATCCAATGATGAACCATGAT 58.935 34.615 0.00 0.00 0.00 2.45
2169 2799 8.219868 AGTACAATCCAATGATGAACCATGATA 58.780 33.333 0.00 0.00 0.00 2.15
2170 2800 7.901283 ACAATCCAATGATGAACCATGATAA 57.099 32.000 0.00 0.00 0.00 1.75
2171 2801 7.948357 ACAATCCAATGATGAACCATGATAAG 58.052 34.615 0.00 0.00 0.00 1.73
2172 2802 7.562454 ACAATCCAATGATGAACCATGATAAGT 59.438 33.333 0.00 0.00 0.00 2.24
2173 2803 6.947644 TCCAATGATGAACCATGATAAGTG 57.052 37.500 0.00 0.00 0.00 3.16
2174 2804 6.661777 TCCAATGATGAACCATGATAAGTGA 58.338 36.000 0.00 0.00 0.00 3.41
2175 2805 6.543465 TCCAATGATGAACCATGATAAGTGAC 59.457 38.462 0.00 0.00 0.00 3.67
2176 2806 6.319405 CCAATGATGAACCATGATAAGTGACA 59.681 38.462 0.00 0.00 0.00 3.58
2177 2807 7.148035 CCAATGATGAACCATGATAAGTGACAA 60.148 37.037 0.00 0.00 0.00 3.18
2178 2808 6.990341 TGATGAACCATGATAAGTGACAAG 57.010 37.500 0.00 0.00 0.00 3.16
2179 2809 6.475504 TGATGAACCATGATAAGTGACAAGT 58.524 36.000 0.00 0.00 0.00 3.16
2180 2810 7.619965 TGATGAACCATGATAAGTGACAAGTA 58.380 34.615 0.00 0.00 0.00 2.24
2181 2811 7.765819 TGATGAACCATGATAAGTGACAAGTAG 59.234 37.037 0.00 0.00 0.00 2.57
2182 2812 7.239763 TGAACCATGATAAGTGACAAGTAGA 57.760 36.000 0.00 0.00 0.00 2.59
2183 2813 7.676004 TGAACCATGATAAGTGACAAGTAGAA 58.324 34.615 0.00 0.00 0.00 2.10
2184 2814 7.819415 TGAACCATGATAAGTGACAAGTAGAAG 59.181 37.037 0.00 0.00 0.00 2.85
2185 2815 7.482169 ACCATGATAAGTGACAAGTAGAAGA 57.518 36.000 0.00 0.00 0.00 2.87
2186 2816 7.907389 ACCATGATAAGTGACAAGTAGAAGAA 58.093 34.615 0.00 0.00 0.00 2.52
2187 2817 8.375506 ACCATGATAAGTGACAAGTAGAAGAAA 58.624 33.333 0.00 0.00 0.00 2.52
2188 2818 9.388506 CCATGATAAGTGACAAGTAGAAGAAAT 57.611 33.333 0.00 0.00 0.00 2.17
2191 2821 9.645059 TGATAAGTGACAAGTAGAAGAAATCAG 57.355 33.333 0.00 0.00 0.00 2.90
2192 2822 9.646427 GATAAGTGACAAGTAGAAGAAATCAGT 57.354 33.333 0.00 0.00 0.00 3.41
2194 2824 8.738645 AAGTGACAAGTAGAAGAAATCAGTTT 57.261 30.769 0.00 0.00 0.00 2.66
2195 2825 9.832445 AAGTGACAAGTAGAAGAAATCAGTTTA 57.168 29.630 0.00 0.00 0.00 2.01
2228 2858 9.623000 TCCTAATTTTATTTAGTTGAGCCTACC 57.377 33.333 0.00 0.00 0.00 3.18
2229 2859 9.403583 CCTAATTTTATTTAGTTGAGCCTACCA 57.596 33.333 0.00 0.00 0.00 3.25
2232 2862 9.700831 AATTTTATTTAGTTGAGCCTACCATCT 57.299 29.630 0.00 0.00 0.00 2.90
2233 2863 9.700831 ATTTTATTTAGTTGAGCCTACCATCTT 57.299 29.630 0.00 0.00 0.00 2.40
2234 2864 8.732746 TTTATTTAGTTGAGCCTACCATCTTC 57.267 34.615 0.00 0.00 0.00 2.87
2235 2865 2.969628 AGTTGAGCCTACCATCTTCG 57.030 50.000 0.00 0.00 0.00 3.79
2236 2866 2.180276 AGTTGAGCCTACCATCTTCGT 58.820 47.619 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.398170 CCAAACATATTTTATGCTGCTACATAC 57.602 33.333 0.00 0.00 32.32 2.39
6 7 9.348476 TCCAAACATATTTTATGCTGCTACATA 57.652 29.630 0.00 0.00 0.00 2.29
7 8 8.236585 TCCAAACATATTTTATGCTGCTACAT 57.763 30.769 0.00 0.00 0.00 2.29
8 9 7.637631 TCCAAACATATTTTATGCTGCTACA 57.362 32.000 0.00 0.00 0.00 2.74
9 10 8.971321 CATTCCAAACATATTTTATGCTGCTAC 58.029 33.333 0.00 0.00 0.00 3.58
10 11 8.911965 TCATTCCAAACATATTTTATGCTGCTA 58.088 29.630 0.00 0.00 0.00 3.49
11 12 7.784037 TCATTCCAAACATATTTTATGCTGCT 58.216 30.769 0.00 0.00 0.00 4.24
12 13 8.422973 TTCATTCCAAACATATTTTATGCTGC 57.577 30.769 0.00 0.00 0.00 5.25
62 63 8.828751 GGGGTTTTTAAGGGTATATTTTTCCTT 58.171 33.333 0.00 0.00 41.83 3.36
63 64 7.962574 TGGGGTTTTTAAGGGTATATTTTTCCT 59.037 33.333 0.00 0.00 0.00 3.36
64 65 8.148437 TGGGGTTTTTAAGGGTATATTTTTCC 57.852 34.615 0.00 0.00 0.00 3.13
66 67 9.796180 GTTTGGGGTTTTTAAGGGTATATTTTT 57.204 29.630 0.00 0.00 0.00 1.94
67 68 8.384718 GGTTTGGGGTTTTTAAGGGTATATTTT 58.615 33.333 0.00 0.00 0.00 1.82
68 69 7.740365 AGGTTTGGGGTTTTTAAGGGTATATTT 59.260 33.333 0.00 0.00 0.00 1.40
69 70 7.257893 AGGTTTGGGGTTTTTAAGGGTATATT 58.742 34.615 0.00 0.00 0.00 1.28
70 71 6.818040 AGGTTTGGGGTTTTTAAGGGTATAT 58.182 36.000 0.00 0.00 0.00 0.86
71 72 6.230331 AGGTTTGGGGTTTTTAAGGGTATA 57.770 37.500 0.00 0.00 0.00 1.47
72 73 5.095903 AGGTTTGGGGTTTTTAAGGGTAT 57.904 39.130 0.00 0.00 0.00 2.73
73 74 4.556225 AGGTTTGGGGTTTTTAAGGGTA 57.444 40.909 0.00 0.00 0.00 3.69
74 75 3.424724 AGGTTTGGGGTTTTTAAGGGT 57.575 42.857 0.00 0.00 0.00 4.34
75 76 4.781775 AAAGGTTTGGGGTTTTTAAGGG 57.218 40.909 0.00 0.00 0.00 3.95
76 77 6.891388 ACTAAAAGGTTTGGGGTTTTTAAGG 58.109 36.000 0.00 0.00 0.00 2.69
77 78 6.987992 GGACTAAAAGGTTTGGGGTTTTTAAG 59.012 38.462 0.00 0.00 0.00 1.85
78 79 6.126825 GGGACTAAAAGGTTTGGGGTTTTTAA 60.127 38.462 0.00 0.00 0.00 1.52
79 80 5.366186 GGGACTAAAAGGTTTGGGGTTTTTA 59.634 40.000 0.00 0.00 0.00 1.52
80 81 4.164604 GGGACTAAAAGGTTTGGGGTTTTT 59.835 41.667 0.00 0.00 0.00 1.94
81 82 3.712733 GGGACTAAAAGGTTTGGGGTTTT 59.287 43.478 0.00 0.00 0.00 2.43
82 83 3.311091 GGGACTAAAAGGTTTGGGGTTT 58.689 45.455 0.00 0.00 0.00 3.27
83 84 2.753846 CGGGACTAAAAGGTTTGGGGTT 60.754 50.000 0.00 0.00 0.00 4.11
84 85 1.202964 CGGGACTAAAAGGTTTGGGGT 60.203 52.381 0.00 0.00 0.00 4.95
85 86 1.541379 CGGGACTAAAAGGTTTGGGG 58.459 55.000 0.00 0.00 0.00 4.96
86 87 1.202964 ACCGGGACTAAAAGGTTTGGG 60.203 52.381 6.32 0.00 32.17 4.12
87 88 2.281539 ACCGGGACTAAAAGGTTTGG 57.718 50.000 6.32 0.00 32.17 3.28
88 89 2.295070 CCAACCGGGACTAAAAGGTTTG 59.705 50.000 6.32 0.00 43.72 2.93
89 90 2.091720 ACCAACCGGGACTAAAAGGTTT 60.092 45.455 6.32 0.00 43.72 3.27
90 91 1.496001 ACCAACCGGGACTAAAAGGTT 59.504 47.619 6.32 0.00 46.76 3.50
91 92 1.142936 ACCAACCGGGACTAAAAGGT 58.857 50.000 6.32 0.00 41.15 3.50
92 93 1.202842 ACACCAACCGGGACTAAAAGG 60.203 52.381 6.32 0.00 41.15 3.11
93 94 2.265589 ACACCAACCGGGACTAAAAG 57.734 50.000 6.32 0.00 41.15 2.27
94 95 3.475575 GTTACACCAACCGGGACTAAAA 58.524 45.455 6.32 0.00 41.15 1.52
95 96 3.124578 GTTACACCAACCGGGACTAAA 57.875 47.619 6.32 0.00 41.15 1.85
96 97 2.837532 GTTACACCAACCGGGACTAA 57.162 50.000 6.32 0.00 41.15 2.24
108 109 0.975887 TAGTCCCGGTTGGTTACACC 59.024 55.000 0.00 0.00 39.22 4.16
109 110 2.837532 TTAGTCCCGGTTGGTTACAC 57.162 50.000 0.00 0.00 34.77 2.90
110 111 2.550639 GCTTTAGTCCCGGTTGGTTACA 60.551 50.000 0.00 0.00 34.77 2.41
111 112 2.079158 GCTTTAGTCCCGGTTGGTTAC 58.921 52.381 0.00 0.00 34.77 2.50
112 113 1.003464 GGCTTTAGTCCCGGTTGGTTA 59.997 52.381 0.00 0.00 34.77 2.85
113 114 0.251033 GGCTTTAGTCCCGGTTGGTT 60.251 55.000 0.00 0.00 34.77 3.67
114 115 1.377612 GGCTTTAGTCCCGGTTGGT 59.622 57.895 0.00 0.00 34.77 3.67
115 116 1.378119 GGGCTTTAGTCCCGGTTGG 60.378 63.158 0.00 0.00 32.49 3.77
116 117 4.313819 GGGCTTTAGTCCCGGTTG 57.686 61.111 0.00 0.00 32.49 3.77
152 153 2.052237 CAACAACGTGGCACGAGC 60.052 61.111 42.65 4.67 46.05 5.03
153 154 2.631428 CCAACAACGTGGCACGAG 59.369 61.111 42.65 33.42 46.05 4.18
159 160 1.335872 GGATCAAAGCCAACAACGTGG 60.336 52.381 0.00 0.00 42.05 4.94
160 161 1.335872 GGGATCAAAGCCAACAACGTG 60.336 52.381 0.00 0.00 0.00 4.49
161 162 0.958822 GGGATCAAAGCCAACAACGT 59.041 50.000 0.00 0.00 0.00 3.99
162 163 0.109781 CGGGATCAAAGCCAACAACG 60.110 55.000 0.00 0.00 0.00 4.10
163 164 0.243636 CCGGGATCAAAGCCAACAAC 59.756 55.000 0.00 0.00 0.00 3.32
164 165 0.897863 CCCGGGATCAAAGCCAACAA 60.898 55.000 18.48 0.00 0.00 2.83
165 166 1.304052 CCCGGGATCAAAGCCAACA 60.304 57.895 18.48 0.00 0.00 3.33
166 167 0.898326 AACCCGGGATCAAAGCCAAC 60.898 55.000 32.02 0.00 0.00 3.77
167 168 0.897863 CAACCCGGGATCAAAGCCAA 60.898 55.000 32.02 0.00 0.00 4.52
168 169 1.304052 CAACCCGGGATCAAAGCCA 60.304 57.895 32.02 0.00 0.00 4.75
169 170 1.304134 ACAACCCGGGATCAAAGCC 60.304 57.895 32.02 0.00 0.00 4.35
170 171 0.608035 TCACAACCCGGGATCAAAGC 60.608 55.000 32.02 0.00 0.00 3.51
171 172 1.165270 GTCACAACCCGGGATCAAAG 58.835 55.000 32.02 11.80 0.00 2.77
172 173 0.604243 CGTCACAACCCGGGATCAAA 60.604 55.000 32.02 6.51 0.00 2.69
173 174 1.004320 CGTCACAACCCGGGATCAA 60.004 57.895 32.02 5.24 0.00 2.57
174 175 1.473497 TTCGTCACAACCCGGGATCA 61.473 55.000 32.02 2.38 0.00 2.92
175 176 1.017701 GTTCGTCACAACCCGGGATC 61.018 60.000 32.02 1.46 0.00 3.36
176 177 1.004200 GTTCGTCACAACCCGGGAT 60.004 57.895 32.02 14.52 0.00 3.85
177 178 2.422591 GTTCGTCACAACCCGGGA 59.577 61.111 32.02 0.00 0.00 5.14
178 179 2.667199 GGTTCGTCACAACCCGGG 60.667 66.667 22.25 22.25 40.18 5.73
179 180 3.039588 CGGTTCGTCACAACCCGG 61.040 66.667 0.00 0.00 42.75 5.73
180 181 2.027897 TCGGTTCGTCACAACCCG 59.972 61.111 4.22 0.00 42.75 5.28
181 182 1.227321 TGTCGGTTCGTCACAACCC 60.227 57.895 4.22 0.00 42.75 4.11
182 183 0.529119 AGTGTCGGTTCGTCACAACC 60.529 55.000 16.67 1.39 45.11 3.77
183 184 2.124011 TAGTGTCGGTTCGTCACAAC 57.876 50.000 16.67 0.00 45.11 3.32
184 185 2.867287 TTAGTGTCGGTTCGTCACAA 57.133 45.000 16.67 8.53 45.11 3.33
185 186 2.867287 TTTAGTGTCGGTTCGTCACA 57.133 45.000 16.67 0.22 45.11 3.58
186 187 2.473984 CCTTTTAGTGTCGGTTCGTCAC 59.526 50.000 9.01 9.01 43.64 3.67
187 188 2.101249 ACCTTTTAGTGTCGGTTCGTCA 59.899 45.455 0.00 0.00 0.00 4.35
188 189 2.473984 CACCTTTTAGTGTCGGTTCGTC 59.526 50.000 0.00 0.00 32.89 4.20
189 190 2.476821 CACCTTTTAGTGTCGGTTCGT 58.523 47.619 0.00 0.00 32.89 3.85
190 191 1.796459 CCACCTTTTAGTGTCGGTTCG 59.204 52.381 0.00 0.00 35.93 3.95
191 192 2.546789 CACCACCTTTTAGTGTCGGTTC 59.453 50.000 0.00 0.00 35.93 3.62
192 193 2.567985 CACCACCTTTTAGTGTCGGTT 58.432 47.619 0.00 0.00 35.93 4.44
193 194 1.202722 CCACCACCTTTTAGTGTCGGT 60.203 52.381 0.00 0.00 35.93 4.69
194 195 1.519408 CCACCACCTTTTAGTGTCGG 58.481 55.000 0.00 0.00 35.93 4.79
195 196 1.519408 CCCACCACCTTTTAGTGTCG 58.481 55.000 0.00 0.00 35.93 4.35
196 197 1.546998 CCCCCACCACCTTTTAGTGTC 60.547 57.143 0.00 0.00 35.93 3.67
197 198 0.481128 CCCCCACCACCTTTTAGTGT 59.519 55.000 0.00 0.00 35.93 3.55
198 199 3.356814 CCCCCACCACCTTTTAGTG 57.643 57.895 0.00 0.00 37.51 2.74
213 214 1.592948 AGGTAAGGACTAAAGCCCCC 58.407 55.000 0.00 0.00 0.00 5.40
214 215 3.733883 AAAGGTAAGGACTAAAGCCCC 57.266 47.619 0.00 0.00 0.00 5.80
215 216 5.646793 CACTAAAAGGTAAGGACTAAAGCCC 59.353 44.000 0.00 0.00 0.00 5.19
216 217 5.123502 GCACTAAAAGGTAAGGACTAAAGCC 59.876 44.000 0.00 0.00 0.00 4.35
217 218 5.123502 GGCACTAAAAGGTAAGGACTAAAGC 59.876 44.000 0.00 0.00 0.00 3.51
218 219 6.235664 TGGCACTAAAAGGTAAGGACTAAAG 58.764 40.000 0.00 0.00 0.00 1.85
219 220 6.183361 ACTGGCACTAAAAGGTAAGGACTAAA 60.183 38.462 0.00 0.00 0.00 1.85
220 221 5.308759 ACTGGCACTAAAAGGTAAGGACTAA 59.691 40.000 0.00 0.00 0.00 2.24
221 222 4.842380 ACTGGCACTAAAAGGTAAGGACTA 59.158 41.667 0.00 0.00 0.00 2.59
222 223 3.651423 ACTGGCACTAAAAGGTAAGGACT 59.349 43.478 0.00 0.00 0.00 3.85
223 224 4.017177 ACTGGCACTAAAAGGTAAGGAC 57.983 45.455 0.00 0.00 0.00 3.85
224 225 4.394729 CAACTGGCACTAAAAGGTAAGGA 58.605 43.478 0.00 0.00 0.00 3.36
225 226 3.506067 CCAACTGGCACTAAAAGGTAAGG 59.494 47.826 0.00 0.00 0.00 2.69
226 227 4.023193 CACCAACTGGCACTAAAAGGTAAG 60.023 45.833 0.00 0.00 39.32 2.34
227 228 3.886505 CACCAACTGGCACTAAAAGGTAA 59.113 43.478 0.00 0.00 39.32 2.85
228 229 3.136809 TCACCAACTGGCACTAAAAGGTA 59.863 43.478 0.00 0.00 39.32 3.08
229 230 2.092103 TCACCAACTGGCACTAAAAGGT 60.092 45.455 0.00 0.00 39.32 3.50
230 231 2.582052 TCACCAACTGGCACTAAAAGG 58.418 47.619 0.00 0.00 39.32 3.11
231 232 3.243401 GGTTCACCAACTGGCACTAAAAG 60.243 47.826 0.00 0.00 39.32 2.27
232 233 2.691011 GGTTCACCAACTGGCACTAAAA 59.309 45.455 0.00 0.00 39.32 1.52
233 234 2.303175 GGTTCACCAACTGGCACTAAA 58.697 47.619 0.00 0.00 39.32 1.85
234 235 1.213182 TGGTTCACCAACTGGCACTAA 59.787 47.619 0.00 0.00 44.35 2.24
235 236 0.840617 TGGTTCACCAACTGGCACTA 59.159 50.000 0.00 0.00 44.35 2.74
236 237 0.466189 CTGGTTCACCAACTGGCACT 60.466 55.000 0.00 0.00 46.97 4.40
237 238 1.455383 CCTGGTTCACCAACTGGCAC 61.455 60.000 0.00 0.00 46.97 5.01
238 239 1.152777 CCTGGTTCACCAACTGGCA 60.153 57.895 0.00 0.00 46.97 4.92
239 240 1.150536 TCCTGGTTCACCAACTGGC 59.849 57.895 0.00 0.00 46.97 4.85
240 241 0.474184 AGTCCTGGTTCACCAACTGG 59.526 55.000 0.00 0.00 46.97 4.00
241 242 3.485463 TTAGTCCTGGTTCACCAACTG 57.515 47.619 11.99 0.00 46.97 3.16
242 243 3.181443 CCTTTAGTCCTGGTTCACCAACT 60.181 47.826 8.15 8.15 46.97 3.16
243 244 3.146847 CCTTTAGTCCTGGTTCACCAAC 58.853 50.000 0.00 0.00 46.97 3.77
244 245 2.781174 ACCTTTAGTCCTGGTTCACCAA 59.219 45.455 0.00 0.00 46.97 3.67
245 246 2.370849 GACCTTTAGTCCTGGTTCACCA 59.629 50.000 0.00 0.00 40.88 4.17
246 247 3.055209 GACCTTTAGTCCTGGTTCACC 57.945 52.381 0.00 0.00 39.84 4.02
265 266 3.056322 GCTTTAGTCCCAGTTCGTAAGGA 60.056 47.826 0.00 0.00 38.47 3.36
266 267 3.259902 GCTTTAGTCCCAGTTCGTAAGG 58.740 50.000 0.00 0.00 38.47 2.69
267 268 3.259902 GGCTTTAGTCCCAGTTCGTAAG 58.740 50.000 0.00 0.00 0.00 2.34
268 269 2.027837 GGGCTTTAGTCCCAGTTCGTAA 60.028 50.000 4.89 0.00 43.37 3.18
269 270 1.551883 GGGCTTTAGTCCCAGTTCGTA 59.448 52.381 4.89 0.00 43.37 3.43
270 271 0.323957 GGGCTTTAGTCCCAGTTCGT 59.676 55.000 4.89 0.00 43.37 3.85
271 272 0.739813 CGGGCTTTAGTCCCAGTTCG 60.740 60.000 9.07 0.00 44.11 3.95
272 273 0.611714 TCGGGCTTTAGTCCCAGTTC 59.388 55.000 9.07 0.00 44.11 3.01
273 274 1.286248 ATCGGGCTTTAGTCCCAGTT 58.714 50.000 9.07 0.00 44.11 3.16
274 275 1.286248 AATCGGGCTTTAGTCCCAGT 58.714 50.000 9.07 0.00 44.11 4.00
275 276 3.403038 CATAATCGGGCTTTAGTCCCAG 58.597 50.000 9.07 3.80 44.11 4.45
276 277 2.486548 GCATAATCGGGCTTTAGTCCCA 60.487 50.000 9.07 0.00 44.11 4.37
277 278 2.152016 GCATAATCGGGCTTTAGTCCC 58.848 52.381 0.00 0.00 36.14 4.46
278 279 2.548480 GTGCATAATCGGGCTTTAGTCC 59.452 50.000 0.00 0.00 36.18 3.85
279 280 3.467803 AGTGCATAATCGGGCTTTAGTC 58.532 45.455 0.00 0.00 0.00 2.59
280 281 3.560636 AGTGCATAATCGGGCTTTAGT 57.439 42.857 0.00 0.00 0.00 2.24
281 282 4.449068 CACTAGTGCATAATCGGGCTTTAG 59.551 45.833 10.54 0.00 0.00 1.85
282 283 4.377021 CACTAGTGCATAATCGGGCTTTA 58.623 43.478 10.54 0.00 0.00 1.85
283 284 3.206150 CACTAGTGCATAATCGGGCTTT 58.794 45.455 10.54 0.00 0.00 3.51
284 285 2.485479 CCACTAGTGCATAATCGGGCTT 60.485 50.000 17.86 0.00 0.00 4.35
285 286 1.070758 CCACTAGTGCATAATCGGGCT 59.929 52.381 17.86 0.00 0.00 5.19
286 287 1.202651 ACCACTAGTGCATAATCGGGC 60.203 52.381 17.86 0.00 0.00 6.13
287 288 2.483876 CACCACTAGTGCATAATCGGG 58.516 52.381 17.86 2.92 40.28 5.14
288 289 2.483876 CCACCACTAGTGCATAATCGG 58.516 52.381 17.86 3.68 45.83 4.18
289 290 1.867233 GCCACCACTAGTGCATAATCG 59.133 52.381 17.86 4.48 45.83 3.34
290 291 2.614057 GTGCCACCACTAGTGCATAATC 59.386 50.000 17.86 4.53 45.83 1.75
291 292 2.643551 GTGCCACCACTAGTGCATAAT 58.356 47.619 17.86 0.00 45.83 1.28
292 293 1.339631 GGTGCCACCACTAGTGCATAA 60.340 52.381 17.86 0.00 45.83 1.90
293 294 0.251916 GGTGCCACCACTAGTGCATA 59.748 55.000 17.86 0.00 45.83 3.14
294 295 1.002134 GGTGCCACCACTAGTGCAT 60.002 57.895 17.86 4.67 45.83 3.96
295 296 0.834261 TAGGTGCCACCACTAGTGCA 60.834 55.000 17.80 9.45 45.83 4.57
296 297 0.323629 TTAGGTGCCACCACTAGTGC 59.676 55.000 17.80 6.66 45.83 4.40
297 298 2.301870 TCTTTAGGTGCCACCACTAGTG 59.698 50.000 17.80 16.34 46.83 2.74
298 299 2.302157 GTCTTTAGGTGCCACCACTAGT 59.698 50.000 17.80 0.00 41.95 2.57
299 300 2.674177 CGTCTTTAGGTGCCACCACTAG 60.674 54.545 17.80 9.53 41.95 2.57
300 301 1.274167 CGTCTTTAGGTGCCACCACTA 59.726 52.381 17.80 0.00 41.95 2.74
301 302 0.034896 CGTCTTTAGGTGCCACCACT 59.965 55.000 17.80 0.00 41.95 4.00
302 303 0.953960 CCGTCTTTAGGTGCCACCAC 60.954 60.000 17.80 3.80 41.95 4.16
303 304 1.373435 CCGTCTTTAGGTGCCACCA 59.627 57.895 17.80 0.00 41.95 4.17
304 305 2.038837 GCCGTCTTTAGGTGCCACC 61.039 63.158 5.50 5.50 38.99 4.61
305 306 2.388232 CGCCGTCTTTAGGTGCCAC 61.388 63.158 0.00 0.00 32.08 5.01
306 307 2.047655 CGCCGTCTTTAGGTGCCA 60.048 61.111 0.00 0.00 32.08 4.92
307 308 1.810030 CTCGCCGTCTTTAGGTGCC 60.810 63.158 0.00 0.00 39.02 5.01
308 309 0.802607 CTCTCGCCGTCTTTAGGTGC 60.803 60.000 0.00 0.00 39.02 5.01
309 310 0.802607 GCTCTCGCCGTCTTTAGGTG 60.803 60.000 0.00 0.00 40.44 4.00
310 311 1.248785 TGCTCTCGCCGTCTTTAGGT 61.249 55.000 0.00 0.00 34.43 3.08
311 312 0.103208 ATGCTCTCGCCGTCTTTAGG 59.897 55.000 0.00 0.00 34.43 2.69
312 313 1.482278 GATGCTCTCGCCGTCTTTAG 58.518 55.000 0.00 0.00 34.43 1.85
313 314 0.248498 CGATGCTCTCGCCGTCTTTA 60.248 55.000 0.00 0.00 41.14 1.85
314 315 1.517257 CGATGCTCTCGCCGTCTTT 60.517 57.895 0.00 0.00 41.14 2.52
315 316 2.103143 CGATGCTCTCGCCGTCTT 59.897 61.111 0.00 0.00 41.14 3.01
316 317 3.893763 CCGATGCTCTCGCCGTCT 61.894 66.667 4.04 0.00 46.25 4.18
337 338 2.104928 TAGATCTGCCACTGCGCG 59.895 61.111 5.18 0.00 41.78 6.86
338 339 0.531532 ATGTAGATCTGCCACTGCGC 60.532 55.000 5.18 0.00 41.78 6.09
339 340 1.945387 AATGTAGATCTGCCACTGCG 58.055 50.000 5.18 0.00 41.78 5.18
340 341 4.708726 AAAAATGTAGATCTGCCACTGC 57.291 40.909 5.18 0.00 38.26 4.40
374 375 9.616156 TCCCGCATGTCTAATTAAGTTAAAATA 57.384 29.630 0.00 0.00 0.00 1.40
375 376 8.403236 GTCCCGCATGTCTAATTAAGTTAAAAT 58.597 33.333 0.00 0.00 0.00 1.82
376 377 7.413219 CGTCCCGCATGTCTAATTAAGTTAAAA 60.413 37.037 0.00 0.00 0.00 1.52
377 378 6.036300 CGTCCCGCATGTCTAATTAAGTTAAA 59.964 38.462 0.00 0.00 0.00 1.52
378 379 5.521010 CGTCCCGCATGTCTAATTAAGTTAA 59.479 40.000 0.00 0.00 0.00 2.01
379 380 5.045215 CGTCCCGCATGTCTAATTAAGTTA 58.955 41.667 0.00 0.00 0.00 2.24
380 381 3.869246 CGTCCCGCATGTCTAATTAAGTT 59.131 43.478 0.00 0.00 0.00 2.66
381 382 3.118884 ACGTCCCGCATGTCTAATTAAGT 60.119 43.478 0.00 0.00 0.00 2.24
382 383 3.245284 CACGTCCCGCATGTCTAATTAAG 59.755 47.826 0.00 0.00 0.00 1.85
383 384 3.119065 TCACGTCCCGCATGTCTAATTAA 60.119 43.478 0.00 0.00 0.00 1.40
384 385 2.427812 TCACGTCCCGCATGTCTAATTA 59.572 45.455 0.00 0.00 0.00 1.40
385 386 1.206132 TCACGTCCCGCATGTCTAATT 59.794 47.619 0.00 0.00 0.00 1.40
386 387 0.821517 TCACGTCCCGCATGTCTAAT 59.178 50.000 0.00 0.00 0.00 1.73
387 388 0.108992 GTCACGTCCCGCATGTCTAA 60.109 55.000 0.00 0.00 0.00 2.10
388 389 0.963856 AGTCACGTCCCGCATGTCTA 60.964 55.000 0.00 0.00 0.00 2.59
389 390 0.963856 TAGTCACGTCCCGCATGTCT 60.964 55.000 0.00 0.00 0.00 3.41
390 391 0.102481 ATAGTCACGTCCCGCATGTC 59.898 55.000 0.00 0.00 0.00 3.06
391 392 0.102481 GATAGTCACGTCCCGCATGT 59.898 55.000 0.00 0.00 0.00 3.21
392 393 0.102300 TGATAGTCACGTCCCGCATG 59.898 55.000 0.00 0.00 0.00 4.06
393 394 1.040646 ATGATAGTCACGTCCCGCAT 58.959 50.000 0.00 0.00 0.00 4.73
394 395 0.821517 AATGATAGTCACGTCCCGCA 59.178 50.000 0.00 0.00 0.00 5.69
395 396 1.209128 CAATGATAGTCACGTCCCGC 58.791 55.000 0.00 0.00 0.00 6.13
396 397 1.852942 CCAATGATAGTCACGTCCCG 58.147 55.000 0.00 0.00 0.00 5.14
397 398 1.139058 AGCCAATGATAGTCACGTCCC 59.861 52.381 0.00 0.00 0.00 4.46
398 399 2.205074 CAGCCAATGATAGTCACGTCC 58.795 52.381 0.00 0.00 0.00 4.79
399 400 2.893637 ACAGCCAATGATAGTCACGTC 58.106 47.619 0.00 0.00 0.00 4.34
400 401 3.334583 AACAGCCAATGATAGTCACGT 57.665 42.857 0.00 0.00 0.00 4.49
401 402 5.794687 TTAAACAGCCAATGATAGTCACG 57.205 39.130 0.00 0.00 0.00 4.35
402 403 9.722056 CTTAATTAAACAGCCAATGATAGTCAC 57.278 33.333 0.00 0.00 0.00 3.67
403 404 9.461312 ACTTAATTAAACAGCCAATGATAGTCA 57.539 29.630 0.00 0.00 0.00 3.41
409 410 9.073475 ACAGTAACTTAATTAAACAGCCAATGA 57.927 29.630 0.00 0.00 0.00 2.57
410 411 9.691362 AACAGTAACTTAATTAAACAGCCAATG 57.309 29.630 0.00 0.00 0.00 2.82
440 441 9.469807 CATTGCAAAAGTAGGTTAAAACATACA 57.530 29.630 17.06 0.00 45.66 2.29
441 442 8.432359 GCATTGCAAAAGTAGGTTAAAACATAC 58.568 33.333 1.71 9.10 44.13 2.39
442 443 7.600752 GGCATTGCAAAAGTAGGTTAAAACATA 59.399 33.333 11.39 0.00 0.00 2.29
443 444 6.426633 GGCATTGCAAAAGTAGGTTAAAACAT 59.573 34.615 11.39 0.00 0.00 2.71
444 445 5.755861 GGCATTGCAAAAGTAGGTTAAAACA 59.244 36.000 11.39 0.00 0.00 2.83
445 446 5.989168 AGGCATTGCAAAAGTAGGTTAAAAC 59.011 36.000 11.39 0.00 0.00 2.43
446 447 6.168270 AGGCATTGCAAAAGTAGGTTAAAA 57.832 33.333 11.39 0.00 0.00 1.52
447 448 5.799827 AGGCATTGCAAAAGTAGGTTAAA 57.200 34.783 11.39 0.00 0.00 1.52
448 449 5.799827 AAGGCATTGCAAAAGTAGGTTAA 57.200 34.783 11.39 0.00 0.00 2.01
449 450 7.475137 AATAAGGCATTGCAAAAGTAGGTTA 57.525 32.000 11.39 0.00 0.00 2.85
450 451 6.358974 AATAAGGCATTGCAAAAGTAGGTT 57.641 33.333 11.39 0.00 0.00 3.50
451 452 6.358974 AAATAAGGCATTGCAAAAGTAGGT 57.641 33.333 11.39 0.00 0.00 3.08
452 453 6.092533 CCAAAATAAGGCATTGCAAAAGTAGG 59.907 38.462 11.39 0.00 0.00 3.18
453 454 6.092533 CCCAAAATAAGGCATTGCAAAAGTAG 59.907 38.462 11.39 0.00 0.00 2.57
454 455 5.936956 CCCAAAATAAGGCATTGCAAAAGTA 59.063 36.000 11.39 0.00 0.00 2.24
455 456 4.761227 CCCAAAATAAGGCATTGCAAAAGT 59.239 37.500 11.39 0.00 0.00 2.66
456 457 4.761227 ACCCAAAATAAGGCATTGCAAAAG 59.239 37.500 11.39 0.00 0.00 2.27
457 458 4.723309 ACCCAAAATAAGGCATTGCAAAA 58.277 34.783 11.39 0.00 0.00 2.44
458 459 4.363991 ACCCAAAATAAGGCATTGCAAA 57.636 36.364 11.39 0.00 0.00 3.68
459 460 4.363991 AACCCAAAATAAGGCATTGCAA 57.636 36.364 11.39 0.00 0.00 4.08
460 461 4.363991 AAACCCAAAATAAGGCATTGCA 57.636 36.364 11.39 0.00 0.00 4.08
461 462 5.003160 AGAAAACCCAAAATAAGGCATTGC 58.997 37.500 0.00 0.00 0.00 3.56
462 463 7.877612 ACTTAGAAAACCCAAAATAAGGCATTG 59.122 33.333 0.00 0.00 0.00 2.82
463 464 7.877612 CACTTAGAAAACCCAAAATAAGGCATT 59.122 33.333 0.00 0.00 0.00 3.56
464 465 7.386059 CACTTAGAAAACCCAAAATAAGGCAT 58.614 34.615 0.00 0.00 0.00 4.40
465 466 6.740122 GCACTTAGAAAACCCAAAATAAGGCA 60.740 38.462 0.00 0.00 0.00 4.75
466 467 5.637810 GCACTTAGAAAACCCAAAATAAGGC 59.362 40.000 0.00 0.00 0.00 4.35
467 468 6.754193 TGCACTTAGAAAACCCAAAATAAGG 58.246 36.000 0.00 0.00 0.00 2.69
468 469 8.831715 ATTGCACTTAGAAAACCCAAAATAAG 57.168 30.769 0.00 0.00 0.00 1.73
469 470 9.699703 GTATTGCACTTAGAAAACCCAAAATAA 57.300 29.630 0.00 0.00 0.00 1.40
470 471 8.024285 CGTATTGCACTTAGAAAACCCAAAATA 58.976 33.333 0.00 0.00 0.00 1.40
471 472 6.866248 CGTATTGCACTTAGAAAACCCAAAAT 59.134 34.615 0.00 0.00 0.00 1.82
472 473 6.210078 CGTATTGCACTTAGAAAACCCAAAA 58.790 36.000 0.00 0.00 0.00 2.44
473 474 5.278561 CCGTATTGCACTTAGAAAACCCAAA 60.279 40.000 0.00 0.00 0.00 3.28
474 475 4.216687 CCGTATTGCACTTAGAAAACCCAA 59.783 41.667 0.00 0.00 0.00 4.12
475 476 3.754323 CCGTATTGCACTTAGAAAACCCA 59.246 43.478 0.00 0.00 0.00 4.51
476 477 4.004982 TCCGTATTGCACTTAGAAAACCC 58.995 43.478 0.00 0.00 0.00 4.11
477 478 4.453136 TGTCCGTATTGCACTTAGAAAACC 59.547 41.667 0.00 0.00 0.00 3.27
478 479 5.049954 TGTGTCCGTATTGCACTTAGAAAAC 60.050 40.000 0.00 0.00 0.00 2.43
479 480 5.057819 TGTGTCCGTATTGCACTTAGAAAA 58.942 37.500 0.00 0.00 0.00 2.29
480 481 4.633175 TGTGTCCGTATTGCACTTAGAAA 58.367 39.130 0.00 0.00 0.00 2.52
481 482 4.260139 TGTGTCCGTATTGCACTTAGAA 57.740 40.909 0.00 0.00 0.00 2.10
482 483 3.945981 TGTGTCCGTATTGCACTTAGA 57.054 42.857 0.00 0.00 0.00 2.10
483 484 5.049680 ACTTTTGTGTCCGTATTGCACTTAG 60.050 40.000 0.00 0.00 0.00 2.18
484 485 4.817464 ACTTTTGTGTCCGTATTGCACTTA 59.183 37.500 0.00 0.00 0.00 2.24
485 486 3.630312 ACTTTTGTGTCCGTATTGCACTT 59.370 39.130 0.00 0.00 0.00 3.16
486 487 3.211045 ACTTTTGTGTCCGTATTGCACT 58.789 40.909 0.00 0.00 0.00 4.40
487 488 3.619233 ACTTTTGTGTCCGTATTGCAC 57.381 42.857 0.00 0.00 0.00 4.57
488 489 4.355437 CAAACTTTTGTGTCCGTATTGCA 58.645 39.130 0.00 0.00 33.59 4.08
489 490 3.733727 CCAAACTTTTGTGTCCGTATTGC 59.266 43.478 1.21 0.00 36.45 3.56
490 491 4.036971 TCCCAAACTTTTGTGTCCGTATTG 59.963 41.667 1.21 0.00 36.45 1.90
491 492 4.208746 TCCCAAACTTTTGTGTCCGTATT 58.791 39.130 1.21 0.00 36.45 1.89
492 493 3.822940 TCCCAAACTTTTGTGTCCGTAT 58.177 40.909 1.21 0.00 36.45 3.06
493 494 3.278668 TCCCAAACTTTTGTGTCCGTA 57.721 42.857 1.21 0.00 36.45 4.02
494 495 2.131776 TCCCAAACTTTTGTGTCCGT 57.868 45.000 1.21 0.00 36.45 4.69
495 496 2.862140 GCATCCCAAACTTTTGTGTCCG 60.862 50.000 1.21 0.00 36.45 4.79
496 497 2.754472 GCATCCCAAACTTTTGTGTCC 58.246 47.619 1.21 0.00 36.45 4.02
497 498 2.393764 CGCATCCCAAACTTTTGTGTC 58.606 47.619 1.21 0.00 36.45 3.67
498 499 1.068434 CCGCATCCCAAACTTTTGTGT 59.932 47.619 1.21 0.00 36.45 3.72
499 500 1.782044 CCGCATCCCAAACTTTTGTG 58.218 50.000 1.21 0.00 36.45 3.33
500 501 0.033366 GCCGCATCCCAAACTTTTGT 59.967 50.000 1.21 0.00 36.45 2.83
501 502 0.670239 GGCCGCATCCCAAACTTTTG 60.670 55.000 0.00 0.00 37.90 2.44
502 503 1.671166 GGCCGCATCCCAAACTTTT 59.329 52.632 0.00 0.00 0.00 2.27
503 504 2.635443 CGGCCGCATCCCAAACTTT 61.635 57.895 14.67 0.00 0.00 2.66
504 505 3.061848 CGGCCGCATCCCAAACTT 61.062 61.111 14.67 0.00 0.00 2.66
517 518 4.036804 TGCATTCAACACGCGGCC 62.037 61.111 12.47 0.00 0.00 6.13
518 519 2.800746 GTGCATTCAACACGCGGC 60.801 61.111 12.47 1.15 0.00 6.53
519 520 2.126888 GGTGCATTCAACACGCGG 60.127 61.111 12.47 1.27 38.98 6.46
520 521 2.499520 CGGTGCATTCAACACGCG 60.500 61.111 3.53 3.53 38.98 6.01
521 522 1.440353 GTCGGTGCATTCAACACGC 60.440 57.895 0.00 0.00 38.98 5.34
522 523 1.206578 GGTCGGTGCATTCAACACG 59.793 57.895 0.00 0.00 38.98 4.49
523 524 1.206578 CGGTCGGTGCATTCAACAC 59.793 57.895 0.00 0.00 37.31 3.32
524 525 1.963855 CCGGTCGGTGCATTCAACA 60.964 57.895 0.55 0.00 0.00 3.33
525 526 2.867472 CCGGTCGGTGCATTCAAC 59.133 61.111 0.55 0.00 0.00 3.18
535 536 2.806503 TTTGGCCATACACCGGTCGG 62.807 60.000 6.09 7.97 42.03 4.79
536 537 0.956410 TTTTGGCCATACACCGGTCG 60.956 55.000 6.09 2.80 0.00 4.79
537 538 0.524414 GTTTTGGCCATACACCGGTC 59.476 55.000 6.09 0.00 0.00 4.79
538 539 0.896479 GGTTTTGGCCATACACCGGT 60.896 55.000 6.09 0.00 0.00 5.28
539 540 1.887301 GGTTTTGGCCATACACCGG 59.113 57.895 6.09 0.00 0.00 5.28
540 541 1.504446 CGGTTTTGGCCATACACCG 59.496 57.895 27.23 27.23 44.07 4.94
541 542 0.609681 TCCGGTTTTGGCCATACACC 60.610 55.000 6.09 12.45 0.00 4.16
542 543 0.524414 GTCCGGTTTTGGCCATACAC 59.476 55.000 6.09 3.23 0.00 2.90
543 544 0.110678 TGTCCGGTTTTGGCCATACA 59.889 50.000 6.09 0.00 0.00 2.29
544 545 0.524414 GTGTCCGGTTTTGGCCATAC 59.476 55.000 6.09 8.26 0.00 2.39
545 546 0.110678 TGTGTCCGGTTTTGGCCATA 59.889 50.000 6.09 0.00 0.00 2.74
546 547 0.541764 ATGTGTCCGGTTTTGGCCAT 60.542 50.000 6.09 0.00 0.00 4.40
547 548 1.152652 ATGTGTCCGGTTTTGGCCA 60.153 52.632 0.00 0.00 0.00 5.36
548 549 1.288752 CATGTGTCCGGTTTTGGCC 59.711 57.895 0.00 0.00 0.00 5.36
549 550 1.372872 GCATGTGTCCGGTTTTGGC 60.373 57.895 0.00 0.00 0.00 4.52
550 551 1.081509 CGCATGTGTCCGGTTTTGG 60.082 57.895 0.00 0.00 0.00 3.28
551 552 0.385473 GACGCATGTGTCCGGTTTTG 60.385 55.000 25.74 0.00 32.61 2.44
552 553 1.946267 GACGCATGTGTCCGGTTTT 59.054 52.632 25.74 0.00 32.61 2.43
553 554 3.650369 GACGCATGTGTCCGGTTT 58.350 55.556 25.74 0.00 32.61 3.27
559 560 1.339711 GCAAAATGGACGCATGTGTC 58.660 50.000 27.60 27.60 38.17 3.67
560 561 0.038343 GGCAAAATGGACGCATGTGT 60.038 50.000 12.68 12.68 0.00 3.72
561 562 0.038435 TGGCAAAATGGACGCATGTG 60.038 50.000 4.30 4.30 0.00 3.21
562 563 0.678395 TTGGCAAAATGGACGCATGT 59.322 45.000 0.00 0.00 0.00 3.21
563 564 1.928503 GATTGGCAAAATGGACGCATG 59.071 47.619 3.01 0.00 0.00 4.06
564 565 1.826720 AGATTGGCAAAATGGACGCAT 59.173 42.857 3.01 0.00 0.00 4.73
565 566 1.255882 AGATTGGCAAAATGGACGCA 58.744 45.000 3.01 0.00 0.00 5.24
566 567 3.502191 TTAGATTGGCAAAATGGACGC 57.498 42.857 3.01 0.00 0.00 5.19
567 568 5.954434 CAATTAGATTGGCAAAATGGACG 57.046 39.130 3.01 0.00 36.63 4.79
587 588 9.098355 CGTCTGTTTTATCAGAATTCTATCCAA 57.902 33.333 7.86 0.00 44.48 3.53
588 589 8.258007 ACGTCTGTTTTATCAGAATTCTATCCA 58.742 33.333 7.86 0.00 44.48 3.41
589 590 8.649973 ACGTCTGTTTTATCAGAATTCTATCC 57.350 34.615 7.86 0.00 44.48 2.59
590 591 8.756864 GGACGTCTGTTTTATCAGAATTCTATC 58.243 37.037 16.46 0.00 44.48 2.08
591 592 7.435488 CGGACGTCTGTTTTATCAGAATTCTAT 59.565 37.037 16.54 5.31 44.48 1.98
592 593 6.750501 CGGACGTCTGTTTTATCAGAATTCTA 59.249 38.462 16.54 0.00 44.48 2.10
593 594 5.577164 CGGACGTCTGTTTTATCAGAATTCT 59.423 40.000 16.54 0.88 44.48 2.40
594 595 5.347907 ACGGACGTCTGTTTTATCAGAATTC 59.652 40.000 24.31 0.00 44.48 2.17
595 596 5.235516 ACGGACGTCTGTTTTATCAGAATT 58.764 37.500 24.31 0.00 44.48 2.17
596 597 4.817517 ACGGACGTCTGTTTTATCAGAAT 58.182 39.130 24.31 0.00 44.48 2.40
597 598 4.247267 ACGGACGTCTGTTTTATCAGAA 57.753 40.909 24.31 0.00 44.48 3.02
598 599 3.928727 ACGGACGTCTGTTTTATCAGA 57.071 42.857 24.31 0.00 41.40 3.27
606 607 2.673833 GATCTCAAACGGACGTCTGTT 58.326 47.619 32.15 32.15 46.62 3.16
607 608 1.401148 CGATCTCAAACGGACGTCTGT 60.401 52.381 24.31 24.31 36.96 3.41
608 609 1.135774 TCGATCTCAAACGGACGTCTG 60.136 52.381 22.81 22.81 0.00 3.51
609 610 1.135746 GTCGATCTCAAACGGACGTCT 60.136 52.381 16.46 0.00 0.00 4.18
610 611 1.257539 GTCGATCTCAAACGGACGTC 58.742 55.000 7.13 7.13 0.00 4.34
611 612 0.594602 TGTCGATCTCAAACGGACGT 59.405 50.000 0.00 0.00 0.00 4.34
612 613 1.649171 CTTGTCGATCTCAAACGGACG 59.351 52.381 0.00 0.00 0.00 4.79
613 614 1.390463 GCTTGTCGATCTCAAACGGAC 59.610 52.381 0.00 0.00 0.00 4.79
614 615 1.272490 AGCTTGTCGATCTCAAACGGA 59.728 47.619 0.00 0.00 0.00 4.69
615 616 1.656095 GAGCTTGTCGATCTCAAACGG 59.344 52.381 0.00 0.00 0.00 4.44
616 617 2.328473 TGAGCTTGTCGATCTCAAACG 58.672 47.619 7.03 0.00 34.30 3.60
617 618 4.153117 ACATTGAGCTTGTCGATCTCAAAC 59.847 41.667 18.97 3.84 46.08 2.93
618 619 4.318332 ACATTGAGCTTGTCGATCTCAAA 58.682 39.130 18.97 8.88 46.08 2.69
619 620 3.930336 ACATTGAGCTTGTCGATCTCAA 58.070 40.909 18.02 18.02 46.72 3.02
620 621 3.599730 ACATTGAGCTTGTCGATCTCA 57.400 42.857 0.00 0.00 35.30 3.27
621 622 4.926244 TCTACATTGAGCTTGTCGATCTC 58.074 43.478 0.00 0.00 0.00 2.75
622 623 4.991153 TCTACATTGAGCTTGTCGATCT 57.009 40.909 0.00 0.00 0.00 2.75
623 624 5.344066 TCTTCTACATTGAGCTTGTCGATC 58.656 41.667 0.00 0.00 0.00 3.69
624 625 5.126222 TCTCTTCTACATTGAGCTTGTCGAT 59.874 40.000 0.00 0.00 0.00 3.59
625 626 4.459337 TCTCTTCTACATTGAGCTTGTCGA 59.541 41.667 0.00 0.00 0.00 4.20
626 627 4.738124 TCTCTTCTACATTGAGCTTGTCG 58.262 43.478 0.00 0.00 0.00 4.35
627 628 5.804979 GTCTCTCTTCTACATTGAGCTTGTC 59.195 44.000 0.00 0.00 0.00 3.18
628 629 5.337169 GGTCTCTCTTCTACATTGAGCTTGT 60.337 44.000 0.00 0.00 0.00 3.16
629 630 5.108517 GGTCTCTCTTCTACATTGAGCTTG 58.891 45.833 0.00 0.00 0.00 4.01
630 631 4.774726 TGGTCTCTCTTCTACATTGAGCTT 59.225 41.667 0.00 0.00 0.00 3.74
631 632 4.348486 TGGTCTCTCTTCTACATTGAGCT 58.652 43.478 0.00 0.00 0.00 4.09
632 633 4.159506 ACTGGTCTCTCTTCTACATTGAGC 59.840 45.833 0.00 0.00 0.00 4.26
633 634 5.652014 AGACTGGTCTCTCTTCTACATTGAG 59.348 44.000 0.00 0.00 34.17 3.02
634 635 5.417266 CAGACTGGTCTCTCTTCTACATTGA 59.583 44.000 0.00 0.00 37.98 2.57
635 636 5.417266 TCAGACTGGTCTCTCTTCTACATTG 59.583 44.000 1.81 0.00 37.98 2.82
636 637 5.575157 TCAGACTGGTCTCTCTTCTACATT 58.425 41.667 1.81 0.00 37.98 2.71
637 638 5.186256 TCAGACTGGTCTCTCTTCTACAT 57.814 43.478 1.81 0.00 37.98 2.29
638 639 4.642466 TCAGACTGGTCTCTCTTCTACA 57.358 45.455 1.81 0.00 37.98 2.74
666 670 3.450817 TGAAACATCGAGGATAGCCAAGA 59.549 43.478 3.06 0.00 36.29 3.02
685 689 2.028484 GTGCCCGTCGACTGTGAA 59.972 61.111 14.70 0.00 0.00 3.18
686 690 3.220658 TGTGCCCGTCGACTGTGA 61.221 61.111 14.70 0.00 0.00 3.58
687 691 2.137425 TAGTGTGCCCGTCGACTGTG 62.137 60.000 14.70 2.73 0.00 3.66
689 693 1.154016 CTAGTGTGCCCGTCGACTG 60.154 63.158 14.70 7.04 0.00 3.51
703 707 1.886542 TGATGACTCGTGCACACTAGT 59.113 47.619 18.64 16.20 39.62 2.57
709 713 2.802816 AGAAACTTGATGACTCGTGCAC 59.197 45.455 6.82 6.82 0.00 4.57
754 763 4.522460 GCACGCAGCTTTTCTCAC 57.478 55.556 0.00 0.00 41.15 3.51
768 778 2.953648 GGTTACTAGGAGAGGAGAGCAC 59.046 54.545 0.00 0.00 0.00 4.40
797 811 0.890683 GTCCTTTGTTGGCTGATGGG 59.109 55.000 0.00 0.00 0.00 4.00
819 833 1.599518 GGTTGCATCACGGACACCA 60.600 57.895 0.00 0.00 0.00 4.17
871 897 1.826720 GTGGTGGTAAGATGACGGGTA 59.173 52.381 0.00 0.00 0.00 3.69
895 922 2.969443 AGACGCAAATTTCTTCCACG 57.031 45.000 0.00 0.00 0.00 4.94
973 1012 2.485835 CCGGTGGTACTGAAACTTTCCA 60.486 50.000 0.00 0.00 0.00 3.53
1227 1268 2.045438 CATGCGGCCTAACCCACA 60.045 61.111 0.00 0.00 33.26 4.17
1230 1271 3.518068 GTGCATGCGGCCTAACCC 61.518 66.667 14.09 0.00 43.89 4.11
1258 1306 3.819337 ACTACTGTACGTATCCATGCGAT 59.181 43.478 0.00 0.32 39.23 4.58
1259 1307 3.208594 ACTACTGTACGTATCCATGCGA 58.791 45.455 0.00 0.00 39.23 5.10
1264 1312 8.498358 CAAATACGATACTACTGTACGTATCCA 58.502 37.037 16.47 11.59 41.91 3.41
1379 1441 5.336150 TGAAACCTGCTTTCAAATGTTGA 57.664 34.783 0.00 0.00 44.42 3.18
1440 1502 6.888105 TGTATGATAATGCAGTGAGGAGAAA 58.112 36.000 0.00 0.00 0.00 2.52
1486 1560 5.360999 TGAACCTGATCGATGTTAGAGATGT 59.639 40.000 0.54 0.00 0.00 3.06
1570 1644 2.290008 ACCACAAACCATACATGCTCGA 60.290 45.455 0.00 0.00 0.00 4.04
1579 1653 2.625790 GACTGCCAAACCACAAACCATA 59.374 45.455 0.00 0.00 0.00 2.74
1725 2259 1.383664 AGATGGGAGGCTAGCTGCA 60.384 57.895 15.72 0.00 45.15 4.41
1732 2266 0.546267 ACACACAGAGATGGGAGGCT 60.546 55.000 0.00 0.00 0.00 4.58
1735 2269 2.433604 AGCATACACACAGAGATGGGAG 59.566 50.000 0.00 0.00 0.00 4.30
1749 2294 3.591023 TCGATCGGTTCAAAAGCATACA 58.409 40.909 16.41 0.00 0.00 2.29
1750 2295 3.617263 ACTCGATCGGTTCAAAAGCATAC 59.383 43.478 16.41 0.00 0.00 2.39
1751 2296 3.857052 ACTCGATCGGTTCAAAAGCATA 58.143 40.909 16.41 0.00 0.00 3.14
1752 2297 2.699954 ACTCGATCGGTTCAAAAGCAT 58.300 42.857 16.41 0.00 0.00 3.79
1753 2298 2.163818 ACTCGATCGGTTCAAAAGCA 57.836 45.000 16.41 0.00 0.00 3.91
1754 2299 2.029365 GCTACTCGATCGGTTCAAAAGC 59.971 50.000 16.41 12.67 0.00 3.51
1755 2300 2.603560 GGCTACTCGATCGGTTCAAAAG 59.396 50.000 16.41 5.71 0.00 2.27
1756 2301 2.232941 AGGCTACTCGATCGGTTCAAAA 59.767 45.455 16.41 0.00 0.00 2.44
1757 2302 1.822990 AGGCTACTCGATCGGTTCAAA 59.177 47.619 16.41 0.00 0.00 2.69
1758 2303 1.404391 GAGGCTACTCGATCGGTTCAA 59.596 52.381 16.41 0.00 33.35 2.69
1817 2429 9.659830 AAAGATCGTTAACATTCACAGTAAAAC 57.340 29.630 6.39 0.00 0.00 2.43
1821 2433 8.492748 GTGAAAAGATCGTTAACATTCACAGTA 58.507 33.333 14.40 0.00 42.73 2.74
1837 2449 5.741388 AATAGTGGCATCGTGAAAAGATC 57.259 39.130 0.00 0.00 30.85 2.75
1840 2452 4.260212 CGGTAATAGTGGCATCGTGAAAAG 60.260 45.833 0.00 0.00 0.00 2.27
1857 2469 1.076332 GCAAGCACGACTTCGGTAAT 58.924 50.000 3.30 0.00 44.95 1.89
1899 2511 2.362077 AGCCTGTGAACACAAAATCACC 59.638 45.455 8.93 0.00 44.16 4.02
1953 2565 5.540719 CCAATGTTTAGGACCTTAACCCAAA 59.459 40.000 18.33 2.83 0.00 3.28
1973 2585 7.838696 TCCATTTCATGACCTTGTATTACCAAT 59.161 33.333 0.00 0.00 0.00 3.16
1983 2595 6.183360 GGACCTTAATCCATTTCATGACCTTG 60.183 42.308 0.00 0.00 38.77 3.61
1990 2602 9.136323 GATGTTTAGGACCTTAATCCATTTCAT 57.864 33.333 0.00 0.00 41.73 2.57
1992 2604 7.497909 TCGATGTTTAGGACCTTAATCCATTTC 59.502 37.037 0.00 0.00 41.73 2.17
1999 2611 9.765795 CTAGAATTCGATGTTTAGGACCTTAAT 57.234 33.333 0.00 0.00 0.00 1.40
2001 2613 8.411683 GTCTAGAATTCGATGTTTAGGACCTTA 58.588 37.037 0.00 0.00 0.00 2.69
2002 2614 7.093465 TGTCTAGAATTCGATGTTTAGGACCTT 60.093 37.037 0.00 0.00 0.00 3.50
2003 2615 6.380274 TGTCTAGAATTCGATGTTTAGGACCT 59.620 38.462 0.00 0.00 0.00 3.85
2004 2616 6.570692 TGTCTAGAATTCGATGTTTAGGACC 58.429 40.000 0.00 0.00 0.00 4.46
2006 2618 6.380274 ACCTGTCTAGAATTCGATGTTTAGGA 59.620 38.462 15.89 0.00 0.00 2.94
2007 2619 6.574350 ACCTGTCTAGAATTCGATGTTTAGG 58.426 40.000 0.00 6.30 0.00 2.69
2008 2620 9.021863 GTTACCTGTCTAGAATTCGATGTTTAG 57.978 37.037 0.00 0.00 0.00 1.85
2009 2621 8.746530 AGTTACCTGTCTAGAATTCGATGTTTA 58.253 33.333 0.00 0.00 0.00 2.01
2010 2622 7.545965 CAGTTACCTGTCTAGAATTCGATGTTT 59.454 37.037 0.00 0.00 33.80 2.83
2011 2623 7.036220 CAGTTACCTGTCTAGAATTCGATGTT 58.964 38.462 0.00 0.00 33.80 2.71
2012 2624 6.565234 CAGTTACCTGTCTAGAATTCGATGT 58.435 40.000 0.00 0.00 33.80 3.06
2013 2625 5.460419 GCAGTTACCTGTCTAGAATTCGATG 59.540 44.000 0.00 0.00 41.02 3.84
2044 2668 9.705103 TGACCACCAGTAGTATAAAGTAGTATT 57.295 33.333 0.00 0.00 0.00 1.89
2140 2770 6.244654 TGGTTCATCATTGGATTGTACTTCA 58.755 36.000 0.00 0.00 0.00 3.02
2147 2777 7.865889 CACTTATCATGGTTCATCATTGGATTG 59.134 37.037 0.00 0.00 0.00 2.67
2159 2789 8.035394 TCTTCTACTTGTCACTTATCATGGTTC 58.965 37.037 0.00 0.00 0.00 3.62
2165 2795 9.645059 CTGATTTCTTCTACTTGTCACTTATCA 57.355 33.333 0.00 0.00 0.00 2.15
2166 2796 9.646427 ACTGATTTCTTCTACTTGTCACTTATC 57.354 33.333 0.00 0.00 0.00 1.75
2168 2798 9.832445 AAACTGATTTCTTCTACTTGTCACTTA 57.168 29.630 0.00 0.00 0.00 2.24
2169 2799 8.738645 AAACTGATTTCTTCTACTTGTCACTT 57.261 30.769 0.00 0.00 0.00 3.16
2202 2832 9.623000 GGTAGGCTCAACTAAATAAAATTAGGA 57.377 33.333 0.00 0.00 37.24 2.94
2203 2833 9.403583 TGGTAGGCTCAACTAAATAAAATTAGG 57.596 33.333 0.00 0.00 37.24 2.69
2206 2836 9.700831 AGATGGTAGGCTCAACTAAATAAAATT 57.299 29.630 0.00 0.00 0.00 1.82
2207 2837 9.700831 AAGATGGTAGGCTCAACTAAATAAAAT 57.299 29.630 0.00 0.00 0.00 1.82
2208 2838 9.174166 GAAGATGGTAGGCTCAACTAAATAAAA 57.826 33.333 0.00 0.00 0.00 1.52
2209 2839 7.494625 CGAAGATGGTAGGCTCAACTAAATAAA 59.505 37.037 0.00 0.00 0.00 1.40
2210 2840 6.984474 CGAAGATGGTAGGCTCAACTAAATAA 59.016 38.462 0.00 0.00 0.00 1.40
2211 2841 6.097839 ACGAAGATGGTAGGCTCAACTAAATA 59.902 38.462 0.00 0.00 0.00 1.40
2212 2842 5.104900 ACGAAGATGGTAGGCTCAACTAAAT 60.105 40.000 0.00 0.00 0.00 1.40
2213 2843 4.222145 ACGAAGATGGTAGGCTCAACTAAA 59.778 41.667 0.00 0.00 0.00 1.85
2214 2844 3.767673 ACGAAGATGGTAGGCTCAACTAA 59.232 43.478 0.00 0.00 0.00 2.24
2215 2845 3.362706 ACGAAGATGGTAGGCTCAACTA 58.637 45.455 0.00 0.00 0.00 2.24
2216 2846 2.180276 ACGAAGATGGTAGGCTCAACT 58.820 47.619 0.00 0.00 0.00 3.16
2217 2847 2.674796 ACGAAGATGGTAGGCTCAAC 57.325 50.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.