Multiple sequence alignment - TraesCS5B01G409800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G409800 chr5B 100.000 2468 0 0 1 2468 584898448 584900915 0.000000e+00 4558
1 TraesCS5B01G409800 chr5B 92.241 116 7 2 2104 2218 611922820 611922706 1.960000e-36 163
2 TraesCS5B01G409800 chr5D 90.085 1644 79 32 323 1931 477320604 477322198 0.000000e+00 2056
3 TraesCS5B01G409800 chr5D 93.846 130 3 3 1979 2103 477322469 477322598 9.010000e-45 191
4 TraesCS5B01G409800 chr5A 88.281 1681 94 45 190 1820 596552030 596553657 0.000000e+00 1917
5 TraesCS5B01G409800 chr5A 86.957 207 15 4 2259 2465 596553929 596554123 3.190000e-54 222
6 TraesCS5B01G409800 chr5A 89.873 158 11 4 1948 2102 596553757 596553912 5.380000e-47 198
7 TraesCS5B01G409800 chr5A 93.103 116 6 2 2104 2218 340626362 340626248 4.220000e-38 169
8 TraesCS5B01G409800 chr5A 93.043 115 6 2 2105 2218 684628821 684628934 1.520000e-37 167
9 TraesCS5B01G409800 chr2A 93.103 116 6 2 2104 2218 549772819 549772933 4.220000e-38 169
10 TraesCS5B01G409800 chr2A 93.043 115 6 2 2104 2217 549760259 549760372 1.520000e-37 167
11 TraesCS5B01G409800 chr7B 93.043 115 6 2 2104 2217 707719259 707719146 1.520000e-37 167
12 TraesCS5B01G409800 chr6B 91.597 119 8 2 2101 2218 36133753 36133870 1.960000e-36 163
13 TraesCS5B01G409800 chr1A 92.241 116 7 2 2104 2218 329250131 329250245 1.960000e-36 163
14 TraesCS5B01G409800 chr3B 92.174 115 7 2 2105 2218 61536213 61536326 7.060000e-36 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G409800 chr5B 584898448 584900915 2467 False 4558.0 4558 100.000000 1 2468 1 chr5B.!!$F1 2467
1 TraesCS5B01G409800 chr5D 477320604 477322598 1994 False 1123.5 2056 91.965500 323 2103 2 chr5D.!!$F1 1780
2 TraesCS5B01G409800 chr5A 596552030 596554123 2093 False 779.0 1917 88.370333 190 2465 3 chr5A.!!$F2 2275

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.178767 TAGCTACGCCACTACCTCGA 59.821 55.0 0.0 0.0 0.0 4.04 F
23 24 0.248539 GCTACGCCACTACCTCGAAG 60.249 60.0 0.0 0.0 0.0 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1445 1487 0.815615 GCCCAAGGCCGACATCTTAG 60.816 60.000 0.0 0.0 44.06 2.18 R
1893 1969 1.068748 CAATATAGTCCCGTCGTCCCG 60.069 57.143 0.0 0.0 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.416901 GCTAGCTACGCCACTACCT 58.583 57.895 7.70 0.00 0.00 3.08
19 20 0.311477 GCTAGCTACGCCACTACCTC 59.689 60.000 7.70 0.00 0.00 3.85
20 21 0.587285 CTAGCTACGCCACTACCTCG 59.413 60.000 0.00 0.00 0.00 4.63
21 22 0.178767 TAGCTACGCCACTACCTCGA 59.821 55.000 0.00 0.00 0.00 4.04
22 23 0.679002 AGCTACGCCACTACCTCGAA 60.679 55.000 0.00 0.00 0.00 3.71
23 24 0.248539 GCTACGCCACTACCTCGAAG 60.249 60.000 0.00 0.00 0.00 3.79
24 25 0.381089 CTACGCCACTACCTCGAAGG 59.619 60.000 0.00 0.00 42.49 3.46
25 26 1.033746 TACGCCACTACCTCGAAGGG 61.034 60.000 5.98 0.00 40.58 3.95
26 27 2.348888 CGCCACTACCTCGAAGGGT 61.349 63.158 1.56 1.56 40.58 4.34
27 28 1.516423 GCCACTACCTCGAAGGGTC 59.484 63.158 0.00 0.00 40.58 4.46
28 29 1.957765 GCCACTACCTCGAAGGGTCC 61.958 65.000 0.00 0.00 40.58 4.46
29 30 0.324460 CCACTACCTCGAAGGGTCCT 60.324 60.000 0.00 0.00 40.58 3.85
30 31 1.558233 CACTACCTCGAAGGGTCCTT 58.442 55.000 1.27 1.27 40.58 3.36
31 32 1.477295 CACTACCTCGAAGGGTCCTTC 59.523 57.143 17.41 17.41 46.41 3.46
42 43 4.322057 AAGGGTCCTTCAATATGCAACT 57.678 40.909 0.00 0.00 0.00 3.16
43 44 3.891049 AGGGTCCTTCAATATGCAACTC 58.109 45.455 0.00 0.00 0.00 3.01
44 45 2.952310 GGGTCCTTCAATATGCAACTCC 59.048 50.000 0.00 0.00 0.00 3.85
45 46 3.372025 GGGTCCTTCAATATGCAACTCCT 60.372 47.826 0.00 0.00 0.00 3.69
46 47 4.141482 GGGTCCTTCAATATGCAACTCCTA 60.141 45.833 0.00 0.00 0.00 2.94
47 48 5.456763 GGGTCCTTCAATATGCAACTCCTAT 60.457 44.000 0.00 0.00 0.00 2.57
48 49 6.064717 GGTCCTTCAATATGCAACTCCTATT 58.935 40.000 0.00 0.00 0.00 1.73
49 50 6.547510 GGTCCTTCAATATGCAACTCCTATTT 59.452 38.462 0.00 0.00 0.00 1.40
50 51 7.719633 GGTCCTTCAATATGCAACTCCTATTTA 59.280 37.037 0.00 0.00 0.00 1.40
51 52 9.289782 GTCCTTCAATATGCAACTCCTATTTAT 57.710 33.333 0.00 0.00 0.00 1.40
52 53 9.866655 TCCTTCAATATGCAACTCCTATTTATT 57.133 29.630 0.00 0.00 0.00 1.40
61 62 9.660544 ATGCAACTCCTATTTATTTTATTCCCT 57.339 29.630 0.00 0.00 0.00 4.20
62 63 9.131791 TGCAACTCCTATTTATTTTATTCCCTC 57.868 33.333 0.00 0.00 0.00 4.30
63 64 8.577296 GCAACTCCTATTTATTTTATTCCCTCC 58.423 37.037 0.00 0.00 0.00 4.30
64 65 8.784043 CAACTCCTATTTATTTTATTCCCTCCG 58.216 37.037 0.00 0.00 0.00 4.63
65 66 8.042286 ACTCCTATTTATTTTATTCCCTCCGT 57.958 34.615 0.00 0.00 0.00 4.69
66 67 8.500238 ACTCCTATTTATTTTATTCCCTCCGTT 58.500 33.333 0.00 0.00 0.00 4.44
67 68 9.350951 CTCCTATTTATTTTATTCCCTCCGTTT 57.649 33.333 0.00 0.00 0.00 3.60
68 69 9.346005 TCCTATTTATTTTATTCCCTCCGTTTC 57.654 33.333 0.00 0.00 0.00 2.78
69 70 9.127277 CCTATTTATTTTATTCCCTCCGTTTCA 57.873 33.333 0.00 0.00 0.00 2.69
73 74 9.689501 TTTATTTTATTCCCTCCGTTTCATAGT 57.310 29.630 0.00 0.00 0.00 2.12
74 75 9.689501 TTATTTTATTCCCTCCGTTTCATAGTT 57.310 29.630 0.00 0.00 0.00 2.24
75 76 8.589701 ATTTTATTCCCTCCGTTTCATAGTTT 57.410 30.769 0.00 0.00 0.00 2.66
76 77 8.411991 TTTTATTCCCTCCGTTTCATAGTTTT 57.588 30.769 0.00 0.00 0.00 2.43
77 78 8.411991 TTTATTCCCTCCGTTTCATAGTTTTT 57.588 30.769 0.00 0.00 0.00 1.94
78 79 5.699097 TTCCCTCCGTTTCATAGTTTTTG 57.301 39.130 0.00 0.00 0.00 2.44
79 80 4.721132 TCCCTCCGTTTCATAGTTTTTGT 58.279 39.130 0.00 0.00 0.00 2.83
80 81 4.758165 TCCCTCCGTTTCATAGTTTTTGTC 59.242 41.667 0.00 0.00 0.00 3.18
81 82 4.517453 CCCTCCGTTTCATAGTTTTTGTCA 59.483 41.667 0.00 0.00 0.00 3.58
82 83 5.183140 CCCTCCGTTTCATAGTTTTTGTCAT 59.817 40.000 0.00 0.00 0.00 3.06
83 84 6.086222 CCTCCGTTTCATAGTTTTTGTCATG 58.914 40.000 0.00 0.00 0.00 3.07
84 85 6.007936 TCCGTTTCATAGTTTTTGTCATGG 57.992 37.500 0.00 0.00 0.00 3.66
85 86 5.533154 TCCGTTTCATAGTTTTTGTCATGGT 59.467 36.000 0.00 0.00 0.00 3.55
86 87 6.039941 TCCGTTTCATAGTTTTTGTCATGGTT 59.960 34.615 0.00 0.00 0.00 3.67
87 88 6.699642 CCGTTTCATAGTTTTTGTCATGGTTT 59.300 34.615 0.00 0.00 0.00 3.27
88 89 7.223777 CCGTTTCATAGTTTTTGTCATGGTTTT 59.776 33.333 0.00 0.00 0.00 2.43
89 90 9.239002 CGTTTCATAGTTTTTGTCATGGTTTTA 57.761 29.630 0.00 0.00 0.00 1.52
93 94 9.959749 TCATAGTTTTTGTCATGGTTTTAGTTC 57.040 29.630 0.00 0.00 0.00 3.01
94 95 9.191995 CATAGTTTTTGTCATGGTTTTAGTTCC 57.808 33.333 0.00 0.00 0.00 3.62
95 96 7.176589 AGTTTTTGTCATGGTTTTAGTTCCA 57.823 32.000 0.00 0.00 38.14 3.53
96 97 7.616313 AGTTTTTGTCATGGTTTTAGTTCCAA 58.384 30.769 0.00 0.00 37.27 3.53
97 98 7.763985 AGTTTTTGTCATGGTTTTAGTTCCAAG 59.236 33.333 0.00 0.00 37.27 3.61
98 99 6.783708 TTTGTCATGGTTTTAGTTCCAAGT 57.216 33.333 0.00 0.00 37.27 3.16
99 100 6.783708 TTGTCATGGTTTTAGTTCCAAGTT 57.216 33.333 0.00 0.00 37.27 2.66
100 101 7.883391 TTGTCATGGTTTTAGTTCCAAGTTA 57.117 32.000 0.00 0.00 37.27 2.24
101 102 7.883391 TGTCATGGTTTTAGTTCCAAGTTAA 57.117 32.000 0.00 0.00 37.27 2.01
102 103 8.294954 TGTCATGGTTTTAGTTCCAAGTTAAA 57.705 30.769 0.00 0.00 37.27 1.52
103 104 8.192110 TGTCATGGTTTTAGTTCCAAGTTAAAC 58.808 33.333 0.00 1.71 37.27 2.01
104 105 8.410912 GTCATGGTTTTAGTTCCAAGTTAAACT 58.589 33.333 7.68 7.68 39.07 2.66
105 106 9.629878 TCATGGTTTTAGTTCCAAGTTAAACTA 57.370 29.630 8.08 6.12 37.02 2.24
113 114 7.242914 AGTTCCAAGTTAAACTAAAGTCACG 57.757 36.000 1.91 0.00 34.05 4.35
114 115 7.043565 AGTTCCAAGTTAAACTAAAGTCACGA 58.956 34.615 0.00 0.00 34.05 4.35
115 116 7.713942 AGTTCCAAGTTAAACTAAAGTCACGAT 59.286 33.333 0.00 0.00 34.05 3.73
116 117 8.981647 GTTCCAAGTTAAACTAAAGTCACGATA 58.018 33.333 0.00 0.00 0.00 2.92
117 118 9.545105 TTCCAAGTTAAACTAAAGTCACGATAA 57.455 29.630 0.00 0.00 0.00 1.75
118 119 9.199982 TCCAAGTTAAACTAAAGTCACGATAAG 57.800 33.333 0.00 0.00 0.00 1.73
119 120 9.199982 CCAAGTTAAACTAAAGTCACGATAAGA 57.800 33.333 0.00 0.00 0.00 2.10
153 154 8.593492 ACAAATGGAGTATTTTGAAAGAAAGC 57.407 30.769 2.69 0.00 36.87 3.51
154 155 8.424133 ACAAATGGAGTATTTTGAAAGAAAGCT 58.576 29.630 2.69 0.00 36.87 3.74
155 156 9.264719 CAAATGGAGTATTTTGAAAGAAAGCTT 57.735 29.630 0.00 0.00 36.87 3.74
156 157 9.481340 AAATGGAGTATTTTGAAAGAAAGCTTC 57.519 29.630 0.00 0.00 35.47 3.86
157 158 7.823745 TGGAGTATTTTGAAAGAAAGCTTCT 57.176 32.000 0.00 0.00 43.15 2.85
167 168 4.647564 AAGAAAGCTTCTTCCCATGAGA 57.352 40.909 0.00 0.00 46.62 3.27
168 169 4.647564 AGAAAGCTTCTTCCCATGAGAA 57.352 40.909 0.00 0.00 36.36 2.87
169 170 4.990526 AGAAAGCTTCTTCCCATGAGAAA 58.009 39.130 0.00 0.00 36.36 2.52
170 171 5.388654 AGAAAGCTTCTTCCCATGAGAAAA 58.611 37.500 0.00 0.00 36.36 2.29
171 172 5.476254 AGAAAGCTTCTTCCCATGAGAAAAG 59.524 40.000 0.00 1.29 36.36 2.27
172 173 4.647564 AGCTTCTTCCCATGAGAAAAGA 57.352 40.909 12.62 5.84 33.10 2.52
173 174 4.587891 AGCTTCTTCCCATGAGAAAAGAG 58.412 43.478 12.62 3.95 33.10 2.85
174 175 4.288105 AGCTTCTTCCCATGAGAAAAGAGA 59.712 41.667 12.62 0.00 33.10 3.10
175 176 4.635324 GCTTCTTCCCATGAGAAAAGAGAG 59.365 45.833 12.62 8.60 33.10 3.20
176 177 4.833478 TCTTCCCATGAGAAAAGAGAGG 57.167 45.455 0.00 0.00 0.00 3.69
177 178 4.429505 TCTTCCCATGAGAAAAGAGAGGA 58.570 43.478 0.00 0.00 0.00 3.71
178 179 4.469227 TCTTCCCATGAGAAAAGAGAGGAG 59.531 45.833 0.00 0.00 0.00 3.69
179 180 4.066578 TCCCATGAGAAAAGAGAGGAGA 57.933 45.455 0.00 0.00 0.00 3.71
180 181 4.429505 TCCCATGAGAAAAGAGAGGAGAA 58.570 43.478 0.00 0.00 0.00 2.87
181 182 4.846367 TCCCATGAGAAAAGAGAGGAGAAA 59.154 41.667 0.00 0.00 0.00 2.52
182 183 5.310594 TCCCATGAGAAAAGAGAGGAGAAAA 59.689 40.000 0.00 0.00 0.00 2.29
183 184 5.647225 CCCATGAGAAAAGAGAGGAGAAAAG 59.353 44.000 0.00 0.00 0.00 2.27
184 185 6.471146 CCATGAGAAAAGAGAGGAGAAAAGA 58.529 40.000 0.00 0.00 0.00 2.52
185 186 6.371271 CCATGAGAAAAGAGAGGAGAAAAGAC 59.629 42.308 0.00 0.00 0.00 3.01
186 187 5.859495 TGAGAAAAGAGAGGAGAAAAGACC 58.141 41.667 0.00 0.00 0.00 3.85
187 188 4.888917 AGAAAAGAGAGGAGAAAAGACCG 58.111 43.478 0.00 0.00 0.00 4.79
188 189 3.686916 AAAGAGAGGAGAAAAGACCGG 57.313 47.619 0.00 0.00 0.00 5.28
193 194 2.077627 GAGGAGAAAAGACCGGAAAGC 58.922 52.381 9.46 0.00 0.00 3.51
196 197 3.055747 AGGAGAAAAGACCGGAAAGCTAG 60.056 47.826 9.46 0.00 0.00 3.42
212 213 4.559862 AGCTAGTGTAAGCAGGTGAAAT 57.440 40.909 0.00 0.00 45.30 2.17
224 225 5.865085 AGCAGGTGAAATGTACTCAAAGTA 58.135 37.500 0.00 0.00 0.00 2.24
230 231 9.216117 AGGTGAAATGTACTCAAAGTAATGTAC 57.784 33.333 0.00 0.00 31.62 2.90
231 232 8.166706 GGTGAAATGTACTCAAAGTAATGTACG 58.833 37.037 0.00 0.00 38.35 3.67
232 233 8.918658 GTGAAATGTACTCAAAGTAATGTACGA 58.081 33.333 0.00 0.00 38.35 3.43
233 234 9.478768 TGAAATGTACTCAAAGTAATGTACGAA 57.521 29.630 0.00 0.00 38.35 3.85
236 237 8.644318 ATGTACTCAAAGTAATGTACGAATCC 57.356 34.615 0.00 0.00 38.35 3.01
238 239 8.255206 TGTACTCAAAGTAATGTACGAATCCAT 58.745 33.333 0.00 0.00 38.35 3.41
239 240 7.772332 ACTCAAAGTAATGTACGAATCCATC 57.228 36.000 0.00 0.00 0.00 3.51
241 242 8.041323 ACTCAAAGTAATGTACGAATCCATCTT 58.959 33.333 0.00 0.00 0.00 2.40
242 243 8.420374 TCAAAGTAATGTACGAATCCATCTTC 57.580 34.615 0.00 0.00 0.00 2.87
244 245 9.529325 CAAAGTAATGTACGAATCCATCTTCTA 57.471 33.333 0.00 0.00 0.00 2.10
246 247 9.751542 AAGTAATGTACGAATCCATCTTCTAAG 57.248 33.333 0.00 0.00 0.00 2.18
248 249 9.915629 GTAATGTACGAATCCATCTTCTAAGAT 57.084 33.333 0.00 0.00 46.30 2.40
250 251 9.915629 AATGTACGAATCCATCTTCTAAGATAC 57.084 33.333 4.93 0.00 43.65 2.24
251 252 7.582352 TGTACGAATCCATCTTCTAAGATACG 58.418 38.462 4.93 8.57 43.65 3.06
271 272 3.557185 ACGTAGTACGAGCACGAATCATA 59.443 43.478 28.47 0.00 46.05 2.15
272 273 4.212847 ACGTAGTACGAGCACGAATCATAT 59.787 41.667 28.47 0.00 46.05 1.78
273 274 4.549980 CGTAGTACGAGCACGAATCATATG 59.450 45.833 17.85 0.00 46.05 1.78
274 275 4.830826 AGTACGAGCACGAATCATATGA 57.169 40.909 11.40 8.10 42.66 2.15
275 276 5.378292 AGTACGAGCACGAATCATATGAT 57.622 39.130 12.62 12.62 42.66 2.45
276 277 5.773575 AGTACGAGCACGAATCATATGATT 58.226 37.500 27.19 27.19 46.54 2.57
277 278 4.979564 ACGAGCACGAATCATATGATTG 57.020 40.909 30.86 23.65 44.14 2.67
280 281 2.481568 AGCACGAATCATATGATTGGCG 59.518 45.455 30.86 28.05 44.14 5.69
281 282 2.480037 GCACGAATCATATGATTGGCGA 59.520 45.455 30.76 3.97 44.14 5.54
308 311 2.599659 ACCGTCCGTCGTTATCTTTTC 58.400 47.619 0.00 0.00 37.94 2.29
310 313 1.007729 CGTCCGTCGTTATCTTTTCGC 60.008 52.381 0.00 0.00 34.52 4.70
311 314 1.987770 GTCCGTCGTTATCTTTTCGCA 59.012 47.619 0.00 0.00 0.00 5.10
312 315 1.987770 TCCGTCGTTATCTTTTCGCAC 59.012 47.619 0.00 0.00 0.00 5.34
314 317 2.027688 CCGTCGTTATCTTTTCGCACTC 59.972 50.000 0.00 0.00 0.00 3.51
315 318 2.915463 CGTCGTTATCTTTTCGCACTCT 59.085 45.455 0.00 0.00 0.00 3.24
316 319 3.241364 CGTCGTTATCTTTTCGCACTCTG 60.241 47.826 0.00 0.00 0.00 3.35
317 320 2.666508 TCGTTATCTTTTCGCACTCTGC 59.333 45.455 0.00 0.00 40.69 4.26
318 321 2.411748 CGTTATCTTTTCGCACTCTGCA 59.588 45.455 0.00 0.00 45.36 4.41
481 486 0.390340 GCAGTCGCTCACAGGATCAA 60.390 55.000 0.00 0.00 34.30 2.57
489 494 1.662629 CTCACAGGATCAATCACACGC 59.337 52.381 0.00 0.00 0.00 5.34
493 498 2.027745 ACAGGATCAATCACACGCTCTT 60.028 45.455 0.00 0.00 0.00 2.85
588 594 1.747709 CTCCGTCTAGAAGACCGGAA 58.252 55.000 19.27 7.30 42.65 4.30
787 821 4.596585 CACCCCACCACCACCACC 62.597 72.222 0.00 0.00 0.00 4.61
789 823 3.826822 CCCCACCACCACCACCAA 61.827 66.667 0.00 0.00 0.00 3.67
803 837 1.217882 CACCAAAGACGCTCGAAACT 58.782 50.000 0.00 0.00 0.00 2.66
815 849 0.841289 TCGAAACTCCAACCCAACCT 59.159 50.000 0.00 0.00 0.00 3.50
827 861 4.535781 CAACCCAACCTAATCCATCATCA 58.464 43.478 0.00 0.00 0.00 3.07
837 871 5.045066 CCTAATCCATCATCACCATCATCCT 60.045 44.000 0.00 0.00 0.00 3.24
884 918 0.617413 CCTGATCCTCCAGTGCTGTT 59.383 55.000 0.00 0.00 32.43 3.16
908 942 2.862738 TCACAGCGTCCGTGATAGA 58.137 52.632 0.00 0.00 38.45 1.98
910 944 0.733150 CACAGCGTCCGTGATAGAGA 59.267 55.000 0.00 0.00 36.43 3.10
911 945 1.018148 ACAGCGTCCGTGATAGAGAG 58.982 55.000 0.00 0.00 0.00 3.20
912 946 1.018148 CAGCGTCCGTGATAGAGAGT 58.982 55.000 0.00 0.00 0.00 3.24
913 947 1.018148 AGCGTCCGTGATAGAGAGTG 58.982 55.000 0.00 0.00 0.00 3.51
921 962 3.004210 CCGTGATAGAGAGTGTGATCCTG 59.996 52.174 0.00 0.00 0.00 3.86
933 974 3.816367 GATCCTGCGCCTGGTAGCC 62.816 68.421 4.18 0.00 0.00 3.93
980 1022 2.363147 AGGGAGAGTGGGTCGAGC 60.363 66.667 5.93 5.93 0.00 5.03
1445 1487 2.919971 GGAAGTCTCACTGCCACAC 58.080 57.895 0.00 0.00 43.85 3.82
1446 1488 0.394565 GGAAGTCTCACTGCCACACT 59.605 55.000 0.00 0.00 43.85 3.55
1450 1492 2.598565 AGTCTCACTGCCACACTAAGA 58.401 47.619 0.00 0.00 0.00 2.10
1530 1579 2.250031 TCAGGTCATGCTTGCCAAAAT 58.750 42.857 13.04 0.00 0.00 1.82
1556 1605 1.274447 CATGCTGCTCCGATCCATCTA 59.726 52.381 0.00 0.00 0.00 1.98
1567 1616 5.560724 TCCGATCCATCTAAAATTGGGATC 58.439 41.667 8.55 8.55 46.72 3.36
1583 1632 7.814264 ATTGGGATCTTGAGCTTGTAAATAG 57.186 36.000 0.00 0.00 0.00 1.73
1584 1633 5.126067 TGGGATCTTGAGCTTGTAAATAGC 58.874 41.667 0.00 0.00 38.93 2.97
1634 1683 7.886696 TGTGTAATTTGCTTGTTTCGTTTTAC 58.113 30.769 0.00 0.00 0.00 2.01
1640 1689 3.246699 TGCTTGTTTCGTTTTACTCTCGG 59.753 43.478 0.00 0.00 0.00 4.63
1787 1836 3.496131 GATTGAAAGCGCGGGCGA 61.496 61.111 19.46 4.51 46.35 5.54
1828 1903 2.162008 CACGATGAATGGCATGTCACAA 59.838 45.455 0.00 0.00 37.34 3.33
1858 1934 4.758674 ACATCAGTTGTCTTGACATTCCTG 59.241 41.667 4.18 10.54 30.89 3.86
1871 1947 2.484287 ATTCCTGTTGCCACCCCGAG 62.484 60.000 0.00 0.00 0.00 4.63
1893 1969 2.139118 GCATTTGATACTCTCGGGCTC 58.861 52.381 0.00 0.00 0.00 4.70
1894 1970 2.398498 CATTTGATACTCTCGGGCTCG 58.602 52.381 0.00 0.00 37.82 5.03
1895 1971 0.744874 TTTGATACTCTCGGGCTCGG 59.255 55.000 5.94 0.00 36.95 4.63
1896 1972 1.107538 TTGATACTCTCGGGCTCGGG 61.108 60.000 5.94 0.68 38.44 5.14
1897 1973 1.228184 GATACTCTCGGGCTCGGGA 60.228 63.158 9.02 9.02 44.58 5.14
1898 1974 1.517210 GATACTCTCGGGCTCGGGAC 61.517 65.000 3.17 0.00 41.53 4.46
1958 2034 1.654105 CGAAACGGAATTCCAGTCGAG 59.346 52.381 25.92 12.68 36.11 4.04
1959 2035 2.685100 GAAACGGAATTCCAGTCGAGT 58.315 47.619 24.09 9.75 35.14 4.18
1960 2036 2.833631 AACGGAATTCCAGTCGAGTT 57.166 45.000 24.09 14.96 35.14 3.01
1961 2037 2.833631 ACGGAATTCCAGTCGAGTTT 57.166 45.000 24.09 0.00 35.14 2.66
1962 2038 3.947910 ACGGAATTCCAGTCGAGTTTA 57.052 42.857 24.09 0.00 35.14 2.01
1963 2039 3.582780 ACGGAATTCCAGTCGAGTTTAC 58.417 45.455 24.09 0.00 35.14 2.01
1964 2040 3.006110 ACGGAATTCCAGTCGAGTTTACA 59.994 43.478 24.09 0.00 35.14 2.41
1965 2041 3.367025 CGGAATTCCAGTCGAGTTTACAC 59.633 47.826 24.09 0.00 35.14 2.90
2056 2358 8.517056 TCATAAGTCTATGAACGTGTCAAACTA 58.483 33.333 0.00 0.00 40.80 2.24
2103 2409 6.809689 TCCGTACCTTATAATTGCATCATACG 59.190 38.462 0.00 0.00 33.35 3.06
2104 2410 6.588756 CCGTACCTTATAATTGCATCATACGT 59.411 38.462 0.00 0.00 32.04 3.57
2105 2411 7.756272 CCGTACCTTATAATTGCATCATACGTA 59.244 37.037 0.00 0.00 32.04 3.57
2106 2412 8.581263 CGTACCTTATAATTGCATCATACGTAC 58.419 37.037 0.00 0.00 0.00 3.67
2107 2413 9.635520 GTACCTTATAATTGCATCATACGTACT 57.364 33.333 0.00 0.00 0.00 2.73
2108 2414 8.758633 ACCTTATAATTGCATCATACGTACTC 57.241 34.615 0.00 0.00 0.00 2.59
2109 2415 7.817962 ACCTTATAATTGCATCATACGTACTCC 59.182 37.037 0.00 0.00 0.00 3.85
2110 2416 7.277981 CCTTATAATTGCATCATACGTACTCCC 59.722 40.741 0.00 0.00 0.00 4.30
2111 2417 4.689612 AATTGCATCATACGTACTCCCT 57.310 40.909 0.00 0.00 0.00 4.20
2112 2418 3.728076 TTGCATCATACGTACTCCCTC 57.272 47.619 0.00 0.00 0.00 4.30
2113 2419 1.961394 TGCATCATACGTACTCCCTCC 59.039 52.381 0.00 0.00 0.00 4.30
2114 2420 1.068472 GCATCATACGTACTCCCTCCG 60.068 57.143 0.00 0.00 0.00 4.63
2115 2421 2.228059 CATCATACGTACTCCCTCCGT 58.772 52.381 0.00 0.00 38.53 4.69
2116 2422 1.959042 TCATACGTACTCCCTCCGTC 58.041 55.000 0.00 0.00 36.12 4.79
2117 2423 0.950116 CATACGTACTCCCTCCGTCC 59.050 60.000 0.00 0.00 36.12 4.79
2118 2424 0.533755 ATACGTACTCCCTCCGTCCG 60.534 60.000 0.00 0.00 36.12 4.79
2119 2425 1.613317 TACGTACTCCCTCCGTCCGA 61.613 60.000 0.00 0.00 36.12 4.55
2120 2426 1.746615 CGTACTCCCTCCGTCCGAA 60.747 63.158 0.00 0.00 0.00 4.30
2121 2427 1.308069 CGTACTCCCTCCGTCCGAAA 61.308 60.000 0.00 0.00 0.00 3.46
2122 2428 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
2123 2429 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
2124 2430 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2125 2431 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2126 2432 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2127 2433 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2128 2434 3.364549 TCCCTCCGTCCGAAAATACTTA 58.635 45.455 0.00 0.00 0.00 2.24
2129 2435 3.962718 TCCCTCCGTCCGAAAATACTTAT 59.037 43.478 0.00 0.00 0.00 1.73
2130 2436 4.038402 TCCCTCCGTCCGAAAATACTTATC 59.962 45.833 0.00 0.00 0.00 1.75
2131 2437 3.979495 CCTCCGTCCGAAAATACTTATCG 59.021 47.826 0.00 0.00 36.39 2.92
2132 2438 3.374745 TCCGTCCGAAAATACTTATCGC 58.625 45.455 0.00 0.00 35.35 4.58
2133 2439 2.152489 CCGTCCGAAAATACTTATCGCG 59.848 50.000 0.00 0.00 35.35 5.87
2134 2440 3.038017 CGTCCGAAAATACTTATCGCGA 58.962 45.455 13.09 13.09 35.35 5.87
2135 2441 3.483196 CGTCCGAAAATACTTATCGCGAA 59.517 43.478 15.24 0.00 35.35 4.70
2136 2442 4.027458 CGTCCGAAAATACTTATCGCGAAA 60.027 41.667 15.24 8.23 35.35 3.46
2137 2443 5.499017 CGTCCGAAAATACTTATCGCGAAAA 60.499 40.000 15.24 0.44 35.35 2.29
2138 2444 6.416514 GTCCGAAAATACTTATCGCGAAAAT 58.583 36.000 15.24 0.00 35.35 1.82
2139 2445 6.353582 GTCCGAAAATACTTATCGCGAAAATG 59.646 38.462 15.24 9.48 35.35 2.32
2140 2446 5.619607 CCGAAAATACTTATCGCGAAAATGG 59.380 40.000 15.24 4.60 35.35 3.16
2141 2447 6.415702 CGAAAATACTTATCGCGAAAATGGA 58.584 36.000 15.24 3.82 0.00 3.41
2142 2448 6.353582 CGAAAATACTTATCGCGAAAATGGAC 59.646 38.462 15.24 0.00 0.00 4.02
2143 2449 4.966850 ATACTTATCGCGAAAATGGACG 57.033 40.909 15.24 0.00 0.00 4.79
2144 2450 2.613691 ACTTATCGCGAAAATGGACGT 58.386 42.857 15.24 0.00 0.00 4.34
2145 2451 3.772932 ACTTATCGCGAAAATGGACGTA 58.227 40.909 15.24 0.00 0.00 3.57
2146 2452 4.365723 ACTTATCGCGAAAATGGACGTAT 58.634 39.130 15.24 0.00 0.00 3.06
2147 2453 4.443394 ACTTATCGCGAAAATGGACGTATC 59.557 41.667 15.24 0.00 0.00 2.24
2148 2454 2.572191 TCGCGAAAATGGACGTATCT 57.428 45.000 6.20 0.00 0.00 1.98
2149 2455 3.696281 TCGCGAAAATGGACGTATCTA 57.304 42.857 6.20 0.00 0.00 1.98
2150 2456 3.624900 TCGCGAAAATGGACGTATCTAG 58.375 45.455 6.20 0.00 0.00 2.43
2151 2457 3.313249 TCGCGAAAATGGACGTATCTAGA 59.687 43.478 6.20 0.00 0.00 2.43
2152 2458 3.421231 CGCGAAAATGGACGTATCTAGAC 59.579 47.826 0.00 0.00 0.00 2.59
2199 2505 9.541724 TTCATTTTTATTCATTTCTTCGACGAG 57.458 29.630 0.00 0.00 0.00 4.18
2200 2506 8.717821 TCATTTTTATTCATTTCTTCGACGAGT 58.282 29.630 0.00 0.00 0.00 4.18
2201 2507 9.967245 CATTTTTATTCATTTCTTCGACGAGTA 57.033 29.630 0.00 0.00 0.00 2.59
2206 2512 6.642683 TTCATTTCTTCGACGAGTATTTCC 57.357 37.500 0.00 0.00 0.00 3.13
2207 2513 5.716094 TCATTTCTTCGACGAGTATTTCCA 58.284 37.500 0.00 0.00 0.00 3.53
2208 2514 5.805486 TCATTTCTTCGACGAGTATTTCCAG 59.195 40.000 0.00 0.00 0.00 3.86
2209 2515 5.381174 TTTCTTCGACGAGTATTTCCAGA 57.619 39.130 0.00 0.00 0.00 3.86
2210 2516 4.352600 TCTTCGACGAGTATTTCCAGAC 57.647 45.455 0.00 0.00 0.00 3.51
2211 2517 2.819422 TCGACGAGTATTTCCAGACG 57.181 50.000 0.00 0.00 0.00 4.18
2212 2518 1.399440 TCGACGAGTATTTCCAGACGG 59.601 52.381 0.00 0.00 0.00 4.79
2213 2519 1.399440 CGACGAGTATTTCCAGACGGA 59.601 52.381 0.00 0.00 40.60 4.69
2214 2520 2.539142 CGACGAGTATTTCCAGACGGAG 60.539 54.545 0.00 0.00 44.10 4.63
2215 2521 1.749634 ACGAGTATTTCCAGACGGAGG 59.250 52.381 0.00 0.00 44.10 4.30
2216 2522 1.067212 CGAGTATTTCCAGACGGAGGG 59.933 57.143 0.00 0.00 44.10 4.30
2217 2523 2.385803 GAGTATTTCCAGACGGAGGGA 58.614 52.381 0.00 0.00 44.10 4.20
2218 2524 2.101082 GAGTATTTCCAGACGGAGGGAC 59.899 54.545 0.00 0.00 44.10 4.46
2219 2525 1.829222 GTATTTCCAGACGGAGGGACA 59.171 52.381 0.00 0.00 44.10 4.02
2220 2526 1.358152 ATTTCCAGACGGAGGGACAA 58.642 50.000 0.00 0.00 44.10 3.18
2221 2527 1.133363 TTTCCAGACGGAGGGACAAA 58.867 50.000 0.00 0.00 44.10 2.83
2234 2540 2.698274 AGGGACAAACAAACAACATCCC 59.302 45.455 0.00 0.00 44.05 3.85
2235 2541 2.432510 GGGACAAACAAACAACATCCCA 59.567 45.455 1.44 0.00 43.33 4.37
2236 2542 3.118592 GGGACAAACAAACAACATCCCAA 60.119 43.478 1.44 0.00 43.33 4.12
2237 2543 4.119136 GGACAAACAAACAACATCCCAAG 58.881 43.478 0.00 0.00 0.00 3.61
2238 2544 3.530535 ACAAACAAACAACATCCCAAGC 58.469 40.909 0.00 0.00 0.00 4.01
2239 2545 3.055530 ACAAACAAACAACATCCCAAGCA 60.056 39.130 0.00 0.00 0.00 3.91
2240 2546 3.457610 AACAAACAACATCCCAAGCAG 57.542 42.857 0.00 0.00 0.00 4.24
2241 2547 2.665165 ACAAACAACATCCCAAGCAGA 58.335 42.857 0.00 0.00 0.00 4.26
2242 2548 3.030291 ACAAACAACATCCCAAGCAGAA 58.970 40.909 0.00 0.00 0.00 3.02
2243 2549 3.181476 ACAAACAACATCCCAAGCAGAAC 60.181 43.478 0.00 0.00 0.00 3.01
2244 2550 1.238439 ACAACATCCCAAGCAGAACG 58.762 50.000 0.00 0.00 0.00 3.95
2245 2551 0.109597 CAACATCCCAAGCAGAACGC 60.110 55.000 0.00 0.00 42.91 4.84
2246 2552 1.244019 AACATCCCAAGCAGAACGCC 61.244 55.000 0.00 0.00 44.04 5.68
2247 2553 1.675310 CATCCCAAGCAGAACGCCA 60.675 57.895 0.00 0.00 44.04 5.69
2248 2554 1.074775 ATCCCAAGCAGAACGCCAA 59.925 52.632 0.00 0.00 44.04 4.52
2249 2555 1.244019 ATCCCAAGCAGAACGCCAAC 61.244 55.000 0.00 0.00 44.04 3.77
2250 2556 2.192861 CCCAAGCAGAACGCCAACA 61.193 57.895 0.00 0.00 44.04 3.33
2251 2557 1.008538 CCAAGCAGAACGCCAACAC 60.009 57.895 0.00 0.00 44.04 3.32
2252 2558 1.008538 CAAGCAGAACGCCAACACC 60.009 57.895 0.00 0.00 44.04 4.16
2253 2559 1.453015 AAGCAGAACGCCAACACCA 60.453 52.632 0.00 0.00 44.04 4.17
2254 2560 1.034838 AAGCAGAACGCCAACACCAA 61.035 50.000 0.00 0.00 44.04 3.67
2255 2561 1.299089 GCAGAACGCCAACACCAAC 60.299 57.895 0.00 0.00 32.94 3.77
2256 2562 1.010125 CAGAACGCCAACACCAACG 60.010 57.895 0.00 0.00 0.00 4.10
2257 2563 1.153329 AGAACGCCAACACCAACGA 60.153 52.632 0.00 0.00 0.00 3.85
2287 2593 7.867305 TCTATTCTACTGAGTTCAGATTCGT 57.133 36.000 15.63 0.00 46.59 3.85
2290 2596 4.971008 TCTACTGAGTTCAGATTCGTTCG 58.029 43.478 15.63 0.00 46.59 3.95
2303 2609 7.088272 TCAGATTCGTTCGTTGAAAGAGAATA 58.912 34.615 0.00 0.00 32.44 1.75
2334 2640 2.032550 CGGCTTAGATTGCATTGGACAG 59.967 50.000 0.00 0.00 0.00 3.51
2388 2694 3.041946 AGGTGGAGTTATCCTGGACATC 58.958 50.000 0.00 0.00 46.80 3.06
2390 2696 3.070302 GGTGGAGTTATCCTGGACATCTC 59.930 52.174 0.00 0.93 46.80 2.75
2400 2706 2.762887 CCTGGACATCTCTAGCTTCACA 59.237 50.000 0.00 0.00 0.00 3.58
2419 2725 4.097741 TCACATTTTGGTGAAGTGGAGTTG 59.902 41.667 0.00 0.00 44.34 3.16
2421 2727 4.339247 ACATTTTGGTGAAGTGGAGTTGAG 59.661 41.667 0.00 0.00 29.86 3.02
2422 2728 3.924114 TTTGGTGAAGTGGAGTTGAGA 57.076 42.857 0.00 0.00 0.00 3.27
2423 2729 4.437682 TTTGGTGAAGTGGAGTTGAGAT 57.562 40.909 0.00 0.00 0.00 2.75
2424 2730 5.560722 TTTGGTGAAGTGGAGTTGAGATA 57.439 39.130 0.00 0.00 0.00 1.98
2425 2731 5.762179 TTGGTGAAGTGGAGTTGAGATAT 57.238 39.130 0.00 0.00 0.00 1.63
2426 2732 5.762179 TGGTGAAGTGGAGTTGAGATATT 57.238 39.130 0.00 0.00 0.00 1.28
2430 2736 7.125659 TGGTGAAGTGGAGTTGAGATATTGATA 59.874 37.037 0.00 0.00 0.00 2.15
2432 2738 9.553064 GTGAAGTGGAGTTGAGATATTGATATT 57.447 33.333 0.00 0.00 0.00 1.28
2436 2742 6.939163 GTGGAGTTGAGATATTGATATTGGCT 59.061 38.462 0.00 0.00 0.00 4.75
2440 2746 9.149225 GAGTTGAGATATTGATATTGGCTAGTG 57.851 37.037 0.00 0.00 0.00 2.74
2465 2771 6.983890 GCATTTTGGTGAAGTTAGAAAAAGGA 59.016 34.615 0.00 0.00 0.00 3.36
2466 2772 7.657354 GCATTTTGGTGAAGTTAGAAAAAGGAT 59.343 33.333 0.00 0.00 0.00 3.24
2467 2773 8.981647 CATTTTGGTGAAGTTAGAAAAAGGATG 58.018 33.333 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.381089 CCTTCGAGGTAGTGGCGTAG 59.619 60.000 0.00 0.00 0.00 3.51
6 7 1.033746 CCCTTCGAGGTAGTGGCGTA 61.034 60.000 0.00 0.00 31.93 4.42
7 8 2.348888 CCCTTCGAGGTAGTGGCGT 61.349 63.158 0.00 0.00 31.93 5.68
8 9 2.280823 GACCCTTCGAGGTAGTGGCG 62.281 65.000 0.00 0.00 41.42 5.69
9 10 1.516423 GACCCTTCGAGGTAGTGGC 59.484 63.158 0.00 0.00 41.42 5.01
10 11 0.324460 AGGACCCTTCGAGGTAGTGG 60.324 60.000 0.00 0.00 41.42 4.00
11 12 1.477295 GAAGGACCCTTCGAGGTAGTG 59.523 57.143 12.51 0.00 41.42 2.74
12 13 1.849977 GAAGGACCCTTCGAGGTAGT 58.150 55.000 12.51 0.00 41.42 2.73
21 22 4.273318 GAGTTGCATATTGAAGGACCCTT 58.727 43.478 0.04 0.04 39.23 3.95
22 23 3.372025 GGAGTTGCATATTGAAGGACCCT 60.372 47.826 0.00 0.00 0.00 4.34
23 24 2.952310 GGAGTTGCATATTGAAGGACCC 59.048 50.000 0.00 0.00 0.00 4.46
24 25 3.891049 AGGAGTTGCATATTGAAGGACC 58.109 45.455 0.00 0.00 0.00 4.46
25 26 7.573968 AAATAGGAGTTGCATATTGAAGGAC 57.426 36.000 0.00 0.00 34.03 3.85
26 27 9.866655 AATAAATAGGAGTTGCATATTGAAGGA 57.133 29.630 0.00 0.00 34.03 3.36
35 36 9.660544 AGGGAATAAAATAAATAGGAGTTGCAT 57.339 29.630 0.00 0.00 0.00 3.96
36 37 9.131791 GAGGGAATAAAATAAATAGGAGTTGCA 57.868 33.333 0.00 0.00 0.00 4.08
37 38 8.577296 GGAGGGAATAAAATAAATAGGAGTTGC 58.423 37.037 0.00 0.00 0.00 4.17
38 39 8.784043 CGGAGGGAATAAAATAAATAGGAGTTG 58.216 37.037 0.00 0.00 0.00 3.16
39 40 8.500238 ACGGAGGGAATAAAATAAATAGGAGTT 58.500 33.333 0.00 0.00 0.00 3.01
40 41 8.042286 ACGGAGGGAATAAAATAAATAGGAGT 57.958 34.615 0.00 0.00 0.00 3.85
41 42 8.919777 AACGGAGGGAATAAAATAAATAGGAG 57.080 34.615 0.00 0.00 0.00 3.69
42 43 9.346005 GAAACGGAGGGAATAAAATAAATAGGA 57.654 33.333 0.00 0.00 0.00 2.94
43 44 9.127277 TGAAACGGAGGGAATAAAATAAATAGG 57.873 33.333 0.00 0.00 0.00 2.57
47 48 9.689501 ACTATGAAACGGAGGGAATAAAATAAA 57.310 29.630 0.00 0.00 0.00 1.40
48 49 9.689501 AACTATGAAACGGAGGGAATAAAATAA 57.310 29.630 0.00 0.00 0.00 1.40
49 50 9.689501 AAACTATGAAACGGAGGGAATAAAATA 57.310 29.630 0.00 0.00 0.00 1.40
50 51 8.589701 AAACTATGAAACGGAGGGAATAAAAT 57.410 30.769 0.00 0.00 0.00 1.82
51 52 8.411991 AAAACTATGAAACGGAGGGAATAAAA 57.588 30.769 0.00 0.00 0.00 1.52
52 53 8.301002 CAAAAACTATGAAACGGAGGGAATAAA 58.699 33.333 0.00 0.00 0.00 1.40
53 54 7.449086 ACAAAAACTATGAAACGGAGGGAATAA 59.551 33.333 0.00 0.00 0.00 1.40
54 55 6.943718 ACAAAAACTATGAAACGGAGGGAATA 59.056 34.615 0.00 0.00 0.00 1.75
55 56 5.773176 ACAAAAACTATGAAACGGAGGGAAT 59.227 36.000 0.00 0.00 0.00 3.01
56 57 5.134661 ACAAAAACTATGAAACGGAGGGAA 58.865 37.500 0.00 0.00 0.00 3.97
57 58 4.721132 ACAAAAACTATGAAACGGAGGGA 58.279 39.130 0.00 0.00 0.00 4.20
58 59 4.517453 TGACAAAAACTATGAAACGGAGGG 59.483 41.667 0.00 0.00 0.00 4.30
59 60 5.682943 TGACAAAAACTATGAAACGGAGG 57.317 39.130 0.00 0.00 0.00 4.30
60 61 6.086222 CCATGACAAAAACTATGAAACGGAG 58.914 40.000 0.00 0.00 0.00 4.63
61 62 5.533154 ACCATGACAAAAACTATGAAACGGA 59.467 36.000 0.00 0.00 0.00 4.69
62 63 5.768317 ACCATGACAAAAACTATGAAACGG 58.232 37.500 0.00 0.00 0.00 4.44
63 64 7.692908 AAACCATGACAAAAACTATGAAACG 57.307 32.000 0.00 0.00 0.00 3.60
67 68 9.959749 GAACTAAAACCATGACAAAAACTATGA 57.040 29.630 0.00 0.00 0.00 2.15
68 69 9.191995 GGAACTAAAACCATGACAAAAACTATG 57.808 33.333 0.00 0.00 0.00 2.23
69 70 8.919145 TGGAACTAAAACCATGACAAAAACTAT 58.081 29.630 0.00 0.00 0.00 2.12
70 71 8.294954 TGGAACTAAAACCATGACAAAAACTA 57.705 30.769 0.00 0.00 0.00 2.24
71 72 7.176589 TGGAACTAAAACCATGACAAAAACT 57.823 32.000 0.00 0.00 0.00 2.66
72 73 7.547722 ACTTGGAACTAAAACCATGACAAAAAC 59.452 33.333 0.00 0.00 36.02 2.43
73 74 7.616313 ACTTGGAACTAAAACCATGACAAAAA 58.384 30.769 0.00 0.00 36.02 1.94
74 75 7.176589 ACTTGGAACTAAAACCATGACAAAA 57.823 32.000 0.00 0.00 36.02 2.44
75 76 6.783708 ACTTGGAACTAAAACCATGACAAA 57.216 33.333 0.00 0.00 36.02 2.83
76 77 6.783708 AACTTGGAACTAAAACCATGACAA 57.216 33.333 0.00 0.00 36.02 3.18
77 78 7.883391 TTAACTTGGAACTAAAACCATGACA 57.117 32.000 0.00 0.00 36.02 3.58
78 79 8.410912 AGTTTAACTTGGAACTAAAACCATGAC 58.589 33.333 0.00 0.00 34.52 3.06
79 80 8.528044 AGTTTAACTTGGAACTAAAACCATGA 57.472 30.769 0.00 0.00 34.52 3.07
87 88 8.819974 CGTGACTTTAGTTTAACTTGGAACTAA 58.180 33.333 1.94 4.98 43.07 2.24
88 89 8.196771 TCGTGACTTTAGTTTAACTTGGAACTA 58.803 33.333 1.94 0.00 37.32 2.24
89 90 7.043565 TCGTGACTTTAGTTTAACTTGGAACT 58.956 34.615 1.94 0.00 39.32 3.01
90 91 7.237920 TCGTGACTTTAGTTTAACTTGGAAC 57.762 36.000 1.94 0.00 0.00 3.62
91 92 9.545105 TTATCGTGACTTTAGTTTAACTTGGAA 57.455 29.630 1.94 0.00 0.00 3.53
92 93 9.199982 CTTATCGTGACTTTAGTTTAACTTGGA 57.800 33.333 1.94 0.00 0.00 3.53
93 94 9.199982 TCTTATCGTGACTTTAGTTTAACTTGG 57.800 33.333 1.94 0.00 0.00 3.61
127 128 9.045223 GCTTTCTTTCAAAATACTCCATTTGTT 57.955 29.630 0.00 0.00 36.93 2.83
128 129 8.424133 AGCTTTCTTTCAAAATACTCCATTTGT 58.576 29.630 0.00 0.00 36.93 2.83
129 130 8.822652 AGCTTTCTTTCAAAATACTCCATTTG 57.177 30.769 0.00 0.00 36.93 2.32
130 131 9.481340 GAAGCTTTCTTTCAAAATACTCCATTT 57.519 29.630 0.00 0.00 33.77 2.32
131 132 8.864087 AGAAGCTTTCTTTCAAAATACTCCATT 58.136 29.630 0.00 0.00 36.36 3.16
132 133 8.414629 AGAAGCTTTCTTTCAAAATACTCCAT 57.585 30.769 0.00 0.00 36.36 3.41
133 134 7.823745 AGAAGCTTTCTTTCAAAATACTCCA 57.176 32.000 0.00 0.00 36.36 3.86
147 148 4.647564 TTCTCATGGGAAGAAGCTTTCT 57.352 40.909 3.16 0.00 43.15 2.52
148 149 5.474876 TCTTTTCTCATGGGAAGAAGCTTTC 59.525 40.000 18.11 0.00 0.00 2.62
149 150 5.388654 TCTTTTCTCATGGGAAGAAGCTTT 58.611 37.500 18.11 0.00 0.00 3.51
150 151 4.990526 TCTTTTCTCATGGGAAGAAGCTT 58.009 39.130 18.11 0.00 0.00 3.74
151 152 4.288105 TCTCTTTTCTCATGGGAAGAAGCT 59.712 41.667 18.11 0.00 0.00 3.74
152 153 4.583871 TCTCTTTTCTCATGGGAAGAAGC 58.416 43.478 18.11 0.00 0.00 3.86
153 154 5.046014 TCCTCTCTTTTCTCATGGGAAGAAG 60.046 44.000 8.30 14.12 0.00 2.85
154 155 4.846367 TCCTCTCTTTTCTCATGGGAAGAA 59.154 41.667 8.30 5.58 0.00 2.52
155 156 4.429505 TCCTCTCTTTTCTCATGGGAAGA 58.570 43.478 8.30 2.93 0.00 2.87
156 157 4.469227 TCTCCTCTCTTTTCTCATGGGAAG 59.531 45.833 8.30 0.00 0.00 3.46
157 158 4.429505 TCTCCTCTCTTTTCTCATGGGAA 58.570 43.478 3.16 3.16 0.00 3.97
158 159 4.066578 TCTCCTCTCTTTTCTCATGGGA 57.933 45.455 0.00 0.00 0.00 4.37
159 160 4.833478 TTCTCCTCTCTTTTCTCATGGG 57.167 45.455 0.00 0.00 0.00 4.00
160 161 6.371271 GTCTTTTCTCCTCTCTTTTCTCATGG 59.629 42.308 0.00 0.00 0.00 3.66
161 162 6.371271 GGTCTTTTCTCCTCTCTTTTCTCATG 59.629 42.308 0.00 0.00 0.00 3.07
162 163 6.472016 GGTCTTTTCTCCTCTCTTTTCTCAT 58.528 40.000 0.00 0.00 0.00 2.90
163 164 5.509840 CGGTCTTTTCTCCTCTCTTTTCTCA 60.510 44.000 0.00 0.00 0.00 3.27
164 165 4.926832 CGGTCTTTTCTCCTCTCTTTTCTC 59.073 45.833 0.00 0.00 0.00 2.87
165 166 4.262678 CCGGTCTTTTCTCCTCTCTTTTCT 60.263 45.833 0.00 0.00 0.00 2.52
166 167 3.997681 CCGGTCTTTTCTCCTCTCTTTTC 59.002 47.826 0.00 0.00 0.00 2.29
167 168 3.646637 TCCGGTCTTTTCTCCTCTCTTTT 59.353 43.478 0.00 0.00 0.00 2.27
168 169 3.240302 TCCGGTCTTTTCTCCTCTCTTT 58.760 45.455 0.00 0.00 0.00 2.52
169 170 2.890814 TCCGGTCTTTTCTCCTCTCTT 58.109 47.619 0.00 0.00 0.00 2.85
170 171 2.606751 TCCGGTCTTTTCTCCTCTCT 57.393 50.000 0.00 0.00 0.00 3.10
171 172 3.591023 CTTTCCGGTCTTTTCTCCTCTC 58.409 50.000 0.00 0.00 0.00 3.20
172 173 2.289756 GCTTTCCGGTCTTTTCTCCTCT 60.290 50.000 0.00 0.00 0.00 3.69
173 174 2.077627 GCTTTCCGGTCTTTTCTCCTC 58.922 52.381 0.00 0.00 0.00 3.71
174 175 1.700186 AGCTTTCCGGTCTTTTCTCCT 59.300 47.619 0.00 0.00 0.00 3.69
175 176 2.186532 AGCTTTCCGGTCTTTTCTCC 57.813 50.000 0.00 0.00 0.00 3.71
176 177 3.680458 CACTAGCTTTCCGGTCTTTTCTC 59.320 47.826 0.00 0.00 0.00 2.87
177 178 3.071167 ACACTAGCTTTCCGGTCTTTTCT 59.929 43.478 0.00 0.00 0.00 2.52
178 179 3.400255 ACACTAGCTTTCCGGTCTTTTC 58.600 45.455 0.00 0.00 0.00 2.29
179 180 3.487120 ACACTAGCTTTCCGGTCTTTT 57.513 42.857 0.00 0.00 0.00 2.27
180 181 4.566987 CTTACACTAGCTTTCCGGTCTTT 58.433 43.478 0.00 0.00 0.00 2.52
181 182 3.616802 GCTTACACTAGCTTTCCGGTCTT 60.617 47.826 0.00 0.00 38.15 3.01
182 183 2.094130 GCTTACACTAGCTTTCCGGTCT 60.094 50.000 0.00 0.00 38.15 3.85
183 184 2.269172 GCTTACACTAGCTTTCCGGTC 58.731 52.381 0.00 0.00 38.15 4.79
184 185 1.621814 TGCTTACACTAGCTTTCCGGT 59.378 47.619 0.00 0.00 41.76 5.28
185 186 2.271800 CTGCTTACACTAGCTTTCCGG 58.728 52.381 0.00 0.00 41.76 5.14
186 187 2.271800 CCTGCTTACACTAGCTTTCCG 58.728 52.381 0.00 0.00 41.76 4.30
187 188 3.003480 CACCTGCTTACACTAGCTTTCC 58.997 50.000 0.00 0.00 41.76 3.13
188 189 3.926616 TCACCTGCTTACACTAGCTTTC 58.073 45.455 0.00 0.00 41.76 2.62
193 194 6.398918 AGTACATTTCACCTGCTTACACTAG 58.601 40.000 0.00 0.00 0.00 2.57
196 197 4.994852 TGAGTACATTTCACCTGCTTACAC 59.005 41.667 0.00 0.00 0.00 2.90
212 213 7.604549 TGGATTCGTACATTACTTTGAGTACA 58.395 34.615 0.00 0.00 37.32 2.90
224 225 9.915629 GTATCTTAGAAGATGGATTCGTACATT 57.084 33.333 13.87 0.00 45.01 2.71
230 231 7.808672 ACTACGTATCTTAGAAGATGGATTCG 58.191 38.462 13.87 11.93 45.01 3.34
232 233 8.719648 CGTACTACGTATCTTAGAAGATGGATT 58.280 37.037 13.87 0.51 39.36 3.01
233 234 8.093307 TCGTACTACGTATCTTAGAAGATGGAT 58.907 37.037 13.87 3.07 42.22 3.41
234 235 7.436933 TCGTACTACGTATCTTAGAAGATGGA 58.563 38.462 13.87 0.00 42.22 3.41
236 237 7.095732 TGCTCGTACTACGTATCTTAGAAGATG 60.096 40.741 13.87 2.30 42.22 2.90
238 239 6.199908 GTGCTCGTACTACGTATCTTAGAAGA 59.800 42.308 8.42 0.00 43.14 2.87
239 240 6.354080 GTGCTCGTACTACGTATCTTAGAAG 58.646 44.000 8.42 0.00 43.14 2.85
241 242 4.442403 CGTGCTCGTACTACGTATCTTAGA 59.558 45.833 8.42 0.00 43.14 2.10
242 243 4.442403 TCGTGCTCGTACTACGTATCTTAG 59.558 45.833 8.17 0.00 43.14 2.18
244 245 3.190079 TCGTGCTCGTACTACGTATCTT 58.810 45.455 8.17 0.00 43.14 2.40
245 246 2.814269 TCGTGCTCGTACTACGTATCT 58.186 47.619 8.17 0.00 43.14 1.98
246 247 3.575858 TTCGTGCTCGTACTACGTATC 57.424 47.619 8.17 0.72 43.14 2.24
248 249 2.929398 TGATTCGTGCTCGTACTACGTA 59.071 45.455 8.17 0.00 43.14 3.57
250 251 2.447089 TGATTCGTGCTCGTACTACG 57.553 50.000 8.17 1.93 44.19 3.51
251 252 5.686834 TCATATGATTCGTGCTCGTACTAC 58.313 41.667 8.17 0.00 38.33 2.73
257 258 3.424039 GCCAATCATATGATTCGTGCTCG 60.424 47.826 24.94 13.50 42.41 5.03
277 278 1.663702 CGGACGGTAATGGATCGCC 60.664 63.158 0.00 0.00 0.00 5.54
280 281 3.174790 CGACGGACGGTAATGGATC 57.825 57.895 0.00 0.00 38.46 3.36
310 313 2.661566 CGTCGGTGCTTGCAGAGTG 61.662 63.158 0.00 0.00 0.00 3.51
311 314 2.356313 CGTCGGTGCTTGCAGAGT 60.356 61.111 0.00 0.00 0.00 3.24
312 315 3.114616 CCGTCGGTGCTTGCAGAG 61.115 66.667 2.08 0.00 0.00 3.35
317 320 3.853330 CATCGCCGTCGGTGCTTG 61.853 66.667 20.16 15.19 40.20 4.01
481 486 0.108804 CACCGGTAAGAGCGTGTGAT 60.109 55.000 6.87 0.00 40.23 3.06
489 494 0.389948 GTCTGGTGCACCGGTAAGAG 60.390 60.000 37.57 24.84 43.01 2.85
493 498 2.203728 AGGTCTGGTGCACCGGTA 60.204 61.111 37.57 24.29 43.01 4.02
588 594 1.704070 GTTGGTGCACGTTGTTTTGT 58.296 45.000 11.45 0.00 0.00 2.83
747 781 1.376812 CCTTCTTGTACCGGTGGCC 60.377 63.158 19.93 5.50 0.00 5.36
748 782 2.038837 GCCTTCTTGTACCGGTGGC 61.039 63.158 19.93 16.17 0.00 5.01
787 821 1.497991 TGGAGTTTCGAGCGTCTTTG 58.502 50.000 0.00 0.00 0.00 2.77
788 822 1.865340 GTTGGAGTTTCGAGCGTCTTT 59.135 47.619 0.00 0.00 0.00 2.52
789 823 1.499049 GTTGGAGTTTCGAGCGTCTT 58.501 50.000 0.00 0.00 0.00 3.01
803 837 2.922955 TGATGGATTAGGTTGGGTTGGA 59.077 45.455 0.00 0.00 0.00 3.53
815 849 5.548836 TGAGGATGATGGTGATGATGGATTA 59.451 40.000 0.00 0.00 0.00 1.75
827 861 6.069088 TGGTTTAATAAGGTGAGGATGATGGT 60.069 38.462 0.00 0.00 0.00 3.55
837 871 5.509332 GCGGGTTTTTGGTTTAATAAGGTGA 60.509 40.000 0.00 0.00 0.00 4.02
908 942 1.986757 AGGCGCAGGATCACACTCT 60.987 57.895 10.83 0.00 0.00 3.24
910 944 2.267006 CAGGCGCAGGATCACACT 59.733 61.111 10.83 0.00 0.00 3.55
911 945 2.238847 TACCAGGCGCAGGATCACAC 62.239 60.000 22.95 0.00 0.00 3.82
912 946 1.960040 CTACCAGGCGCAGGATCACA 61.960 60.000 22.95 3.80 0.00 3.58
913 947 1.227380 CTACCAGGCGCAGGATCAC 60.227 63.158 22.95 0.00 0.00 3.06
947 988 1.205064 CCTGCAAGAACGAACGCTG 59.795 57.895 0.00 0.00 34.07 5.18
1017 1059 3.730761 CACAGCCACCGCAGCTTC 61.731 66.667 0.00 0.00 38.95 3.86
1274 1316 2.190313 GCACGGCATGGAGATGGA 59.810 61.111 0.00 0.00 0.00 3.41
1423 1465 1.298014 GGCAGTGAGACTTCCTGGG 59.702 63.158 0.00 0.00 28.46 4.45
1445 1487 0.815615 GCCCAAGGCCGACATCTTAG 60.816 60.000 0.00 0.00 44.06 2.18
1446 1488 1.223487 GCCCAAGGCCGACATCTTA 59.777 57.895 0.00 0.00 44.06 2.10
1530 1579 1.739466 GATCGGAGCAGCATGAACAAA 59.261 47.619 0.00 0.00 39.69 2.83
1556 1605 6.916360 TTACAAGCTCAAGATCCCAATTTT 57.084 33.333 0.00 0.00 0.00 1.82
1567 1616 5.725110 ATCGTGCTATTTACAAGCTCAAG 57.275 39.130 0.00 0.00 40.73 3.02
1583 1632 2.158957 TGAATTCCTCCCTGTATCGTGC 60.159 50.000 2.27 0.00 0.00 5.34
1584 1633 3.819564 TGAATTCCTCCCTGTATCGTG 57.180 47.619 2.27 0.00 0.00 4.35
1634 1683 6.182039 TGATTTTTGAAGCATAACCGAGAG 57.818 37.500 0.00 0.00 0.00 3.20
1640 1689 5.422145 AGCCCATGATTTTTGAAGCATAAC 58.578 37.500 0.00 0.00 0.00 1.89
1766 1815 2.009888 CCCGCGCTTTCAATCTCTC 58.990 57.895 5.56 0.00 0.00 3.20
1797 1846 2.520465 ATTCATCGTGTGCCCGCTCA 62.520 55.000 0.00 0.00 0.00 4.26
1798 1847 1.815421 ATTCATCGTGTGCCCGCTC 60.815 57.895 0.00 0.00 0.00 5.03
1871 1947 1.884235 CCCGAGAGTATCAAATGCCC 58.116 55.000 0.00 0.00 37.82 5.36
1893 1969 1.068748 CAATATAGTCCCGTCGTCCCG 60.069 57.143 0.00 0.00 0.00 5.14
1894 1970 2.233271 TCAATATAGTCCCGTCGTCCC 58.767 52.381 0.00 0.00 0.00 4.46
1895 1971 5.831702 ATATCAATATAGTCCCGTCGTCC 57.168 43.478 0.00 0.00 0.00 4.79
1896 1972 6.264088 GGAATATCAATATAGTCCCGTCGTC 58.736 44.000 1.35 0.00 43.88 4.20
1897 1973 6.205101 GGAATATCAATATAGTCCCGTCGT 57.795 41.667 1.35 0.00 43.88 4.34
1898 1974 7.890859 GACTGGAATATCAATATAGTCCCGTCG 60.891 44.444 15.63 0.00 46.96 5.12
1938 2014 1.654105 CTCGACTGGAATTCCGTTTCG 59.346 52.381 25.31 25.31 39.43 3.46
1939 2015 2.685100 ACTCGACTGGAATTCCGTTTC 58.315 47.619 19.57 13.58 39.43 2.78
1940 2016 2.833631 ACTCGACTGGAATTCCGTTT 57.166 45.000 19.57 6.01 39.43 3.60
1942 2018 2.833631 AAACTCGACTGGAATTCCGT 57.166 45.000 19.57 18.68 39.43 4.69
1944 2020 4.566987 AGTGTAAACTCGACTGGAATTCC 58.433 43.478 18.17 18.17 0.00 3.01
1946 2022 6.342338 ACTAGTGTAAACTCGACTGGAATT 57.658 37.500 0.00 0.00 0.00 2.17
1947 2023 5.979288 ACTAGTGTAAACTCGACTGGAAT 57.021 39.130 0.00 0.00 0.00 3.01
1948 2024 5.779529 AACTAGTGTAAACTCGACTGGAA 57.220 39.130 0.00 0.00 0.00 3.53
1949 2025 5.779529 AAACTAGTGTAAACTCGACTGGA 57.220 39.130 0.00 0.00 0.00 3.86
1950 2026 6.441274 TGTAAACTAGTGTAAACTCGACTGG 58.559 40.000 0.00 0.00 0.00 4.00
1951 2027 7.919313 TTGTAAACTAGTGTAAACTCGACTG 57.081 36.000 0.00 0.00 0.00 3.51
1953 2029 7.784760 CGTTTTGTAAACTAGTGTAAACTCGAC 59.215 37.037 0.00 0.00 0.00 4.20
1955 2031 6.567512 GCGTTTTGTAAACTAGTGTAAACTCG 59.432 38.462 0.00 5.36 0.00 4.18
1956 2032 7.581600 CAGCGTTTTGTAAACTAGTGTAAACTC 59.418 37.037 0.00 0.00 0.00 3.01
1958 2034 6.139638 GCAGCGTTTTGTAAACTAGTGTAAAC 59.860 38.462 0.00 0.00 0.00 2.01
1959 2035 6.037391 AGCAGCGTTTTGTAAACTAGTGTAAA 59.963 34.615 0.00 0.00 0.00 2.01
1960 2036 5.524646 AGCAGCGTTTTGTAAACTAGTGTAA 59.475 36.000 0.00 0.00 0.00 2.41
1961 2037 5.051816 AGCAGCGTTTTGTAAACTAGTGTA 58.948 37.500 0.00 0.00 0.00 2.90
1962 2038 3.875134 AGCAGCGTTTTGTAAACTAGTGT 59.125 39.130 0.00 0.00 0.00 3.55
1963 2039 4.468095 AGCAGCGTTTTGTAAACTAGTG 57.532 40.909 0.00 0.00 0.00 2.74
1964 2040 4.450080 GGTAGCAGCGTTTTGTAAACTAGT 59.550 41.667 0.00 0.00 0.00 2.57
1965 2041 4.449743 TGGTAGCAGCGTTTTGTAAACTAG 59.550 41.667 0.00 0.00 0.00 2.57
2031 2332 7.582435 AGTTTGACACGTTCATAGACTTATG 57.418 36.000 0.00 0.00 38.41 1.90
2103 2409 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
2104 2410 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2105 2411 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2106 2412 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2107 2413 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2108 2414 2.685850 AAGTATTTTCGGACGGAGGG 57.314 50.000 0.00 0.00 0.00 4.30
2109 2415 3.979495 CGATAAGTATTTTCGGACGGAGG 59.021 47.826 0.00 0.00 44.05 4.30
2118 2424 6.353582 CGTCCATTTTCGCGATAAGTATTTTC 59.646 38.462 10.88 0.00 0.00 2.29
2119 2425 6.183360 ACGTCCATTTTCGCGATAAGTATTTT 60.183 34.615 10.88 0.00 0.00 1.82
2120 2426 5.292589 ACGTCCATTTTCGCGATAAGTATTT 59.707 36.000 10.88 0.00 0.00 1.40
2121 2427 4.807304 ACGTCCATTTTCGCGATAAGTATT 59.193 37.500 10.88 0.00 0.00 1.89
2122 2428 4.365723 ACGTCCATTTTCGCGATAAGTAT 58.634 39.130 10.88 0.00 0.00 2.12
2123 2429 3.772932 ACGTCCATTTTCGCGATAAGTA 58.227 40.909 10.88 0.00 0.00 2.24
2124 2430 2.613691 ACGTCCATTTTCGCGATAAGT 58.386 42.857 10.88 2.26 0.00 2.24
2125 2431 4.680110 AGATACGTCCATTTTCGCGATAAG 59.320 41.667 10.88 5.76 0.00 1.73
2126 2432 4.613944 AGATACGTCCATTTTCGCGATAA 58.386 39.130 10.88 12.88 0.00 1.75
2127 2433 4.233123 AGATACGTCCATTTTCGCGATA 57.767 40.909 10.88 0.90 0.00 2.92
2128 2434 3.093717 AGATACGTCCATTTTCGCGAT 57.906 42.857 10.88 0.00 0.00 4.58
2129 2435 2.572191 AGATACGTCCATTTTCGCGA 57.428 45.000 3.71 3.71 0.00 5.87
2130 2436 3.421231 GTCTAGATACGTCCATTTTCGCG 59.579 47.826 0.00 0.00 0.00 5.87
2131 2437 3.421231 CGTCTAGATACGTCCATTTTCGC 59.579 47.826 0.00 0.00 38.07 4.70
2173 2479 9.541724 CTCGTCGAAGAAATGAATAAAAATGAA 57.458 29.630 1.95 0.00 39.69 2.57
2174 2480 8.717821 ACTCGTCGAAGAAATGAATAAAAATGA 58.282 29.630 1.95 0.00 39.69 2.57
2175 2481 8.880768 ACTCGTCGAAGAAATGAATAAAAATG 57.119 30.769 1.95 0.00 39.69 2.32
2180 2486 8.814235 GGAAATACTCGTCGAAGAAATGAATAA 58.186 33.333 1.95 0.00 39.69 1.40
2181 2487 7.977293 TGGAAATACTCGTCGAAGAAATGAATA 59.023 33.333 1.95 0.00 39.69 1.75
2182 2488 6.816640 TGGAAATACTCGTCGAAGAAATGAAT 59.183 34.615 1.95 0.00 39.69 2.57
2183 2489 6.160684 TGGAAATACTCGTCGAAGAAATGAA 58.839 36.000 1.95 0.00 39.69 2.57
2184 2490 5.716094 TGGAAATACTCGTCGAAGAAATGA 58.284 37.500 1.95 0.00 39.69 2.57
2185 2491 5.805486 TCTGGAAATACTCGTCGAAGAAATG 59.195 40.000 1.95 0.00 39.69 2.32
2186 2492 5.805994 GTCTGGAAATACTCGTCGAAGAAAT 59.194 40.000 1.95 0.00 39.69 2.17
2187 2493 5.159209 GTCTGGAAATACTCGTCGAAGAAA 58.841 41.667 1.95 0.00 39.69 2.52
2188 2494 4.670992 CGTCTGGAAATACTCGTCGAAGAA 60.671 45.833 1.95 0.00 39.69 2.52
2189 2495 3.181513 CGTCTGGAAATACTCGTCGAAGA 60.182 47.826 0.03 0.03 0.00 2.87
2190 2496 3.099362 CGTCTGGAAATACTCGTCGAAG 58.901 50.000 0.00 0.00 0.00 3.79
2191 2497 2.159476 CCGTCTGGAAATACTCGTCGAA 60.159 50.000 0.00 0.00 37.49 3.71
2192 2498 1.399440 CCGTCTGGAAATACTCGTCGA 59.601 52.381 0.00 0.00 37.49 4.20
2193 2499 1.399440 TCCGTCTGGAAATACTCGTCG 59.601 52.381 0.00 0.00 42.85 5.12
2194 2500 2.223525 CCTCCGTCTGGAAATACTCGTC 60.224 54.545 0.00 0.00 45.87 4.20
2195 2501 1.749634 CCTCCGTCTGGAAATACTCGT 59.250 52.381 0.00 0.00 45.87 4.18
2196 2502 1.067212 CCCTCCGTCTGGAAATACTCG 59.933 57.143 0.00 0.00 45.87 4.18
2197 2503 2.101082 GTCCCTCCGTCTGGAAATACTC 59.899 54.545 0.00 0.00 45.87 2.59
2198 2504 2.108970 GTCCCTCCGTCTGGAAATACT 58.891 52.381 0.00 0.00 45.87 2.12
2199 2505 1.829222 TGTCCCTCCGTCTGGAAATAC 59.171 52.381 0.00 0.00 45.87 1.89
2200 2506 2.241281 TGTCCCTCCGTCTGGAAATA 57.759 50.000 0.00 0.00 45.87 1.40
2201 2507 1.358152 TTGTCCCTCCGTCTGGAAAT 58.642 50.000 0.00 0.00 45.87 2.17
2202 2508 1.133363 TTTGTCCCTCCGTCTGGAAA 58.867 50.000 0.00 0.00 45.87 3.13
2203 2509 0.395312 GTTTGTCCCTCCGTCTGGAA 59.605 55.000 0.00 0.00 45.87 3.53
2204 2510 0.761323 TGTTTGTCCCTCCGTCTGGA 60.761 55.000 0.00 0.00 43.88 3.86
2205 2511 0.107831 TTGTTTGTCCCTCCGTCTGG 59.892 55.000 0.00 0.00 0.00 3.86
2206 2512 1.602377 GTTTGTTTGTCCCTCCGTCTG 59.398 52.381 0.00 0.00 0.00 3.51
2207 2513 1.210967 TGTTTGTTTGTCCCTCCGTCT 59.789 47.619 0.00 0.00 0.00 4.18
2208 2514 1.670791 TGTTTGTTTGTCCCTCCGTC 58.329 50.000 0.00 0.00 0.00 4.79
2209 2515 1.746787 GTTGTTTGTTTGTCCCTCCGT 59.253 47.619 0.00 0.00 0.00 4.69
2210 2516 1.746220 TGTTGTTTGTTTGTCCCTCCG 59.254 47.619 0.00 0.00 0.00 4.63
2211 2517 3.243737 GGATGTTGTTTGTTTGTCCCTCC 60.244 47.826 0.00 0.00 0.00 4.30
2212 2518 3.243737 GGGATGTTGTTTGTTTGTCCCTC 60.244 47.826 0.00 0.00 40.49 4.30
2213 2519 2.698274 GGGATGTTGTTTGTTTGTCCCT 59.302 45.455 0.00 0.00 40.49 4.20
2214 2520 2.432510 TGGGATGTTGTTTGTTTGTCCC 59.567 45.455 0.00 0.00 43.26 4.46
2215 2521 3.810310 TGGGATGTTGTTTGTTTGTCC 57.190 42.857 0.00 0.00 0.00 4.02
2216 2522 3.555547 GCTTGGGATGTTGTTTGTTTGTC 59.444 43.478 0.00 0.00 0.00 3.18
2217 2523 3.055530 TGCTTGGGATGTTGTTTGTTTGT 60.056 39.130 0.00 0.00 0.00 2.83
2218 2524 3.529533 TGCTTGGGATGTTGTTTGTTTG 58.470 40.909 0.00 0.00 0.00 2.93
2219 2525 3.450457 TCTGCTTGGGATGTTGTTTGTTT 59.550 39.130 0.00 0.00 0.00 2.83
2220 2526 3.030291 TCTGCTTGGGATGTTGTTTGTT 58.970 40.909 0.00 0.00 0.00 2.83
2221 2527 2.665165 TCTGCTTGGGATGTTGTTTGT 58.335 42.857 0.00 0.00 0.00 2.83
2234 2540 1.008538 GGTGTTGGCGTTCTGCTTG 60.009 57.895 0.00 0.00 45.43 4.01
2235 2541 1.034838 TTGGTGTTGGCGTTCTGCTT 61.035 50.000 0.00 0.00 45.43 3.91
2236 2542 1.453015 TTGGTGTTGGCGTTCTGCT 60.453 52.632 0.00 0.00 45.43 4.24
2237 2543 1.299089 GTTGGTGTTGGCGTTCTGC 60.299 57.895 0.00 0.00 45.38 4.26
2238 2544 1.010125 CGTTGGTGTTGGCGTTCTG 60.010 57.895 0.00 0.00 0.00 3.02
2239 2545 0.745128 TTCGTTGGTGTTGGCGTTCT 60.745 50.000 0.00 0.00 0.00 3.01
2240 2546 0.099082 TTTCGTTGGTGTTGGCGTTC 59.901 50.000 0.00 0.00 0.00 3.95
2241 2547 0.179158 GTTTCGTTGGTGTTGGCGTT 60.179 50.000 0.00 0.00 0.00 4.84
2242 2548 1.306642 TGTTTCGTTGGTGTTGGCGT 61.307 50.000 0.00 0.00 0.00 5.68
2243 2549 0.179161 TTGTTTCGTTGGTGTTGGCG 60.179 50.000 0.00 0.00 0.00 5.69
2244 2550 2.124122 GATTGTTTCGTTGGTGTTGGC 58.876 47.619 0.00 0.00 0.00 4.52
2245 2551 3.708563 AGATTGTTTCGTTGGTGTTGG 57.291 42.857 0.00 0.00 0.00 3.77
2246 2552 6.668323 AGAATAGATTGTTTCGTTGGTGTTG 58.332 36.000 0.00 0.00 0.00 3.33
2247 2553 6.877611 AGAATAGATTGTTTCGTTGGTGTT 57.122 33.333 0.00 0.00 0.00 3.32
2248 2554 7.117812 CAGTAGAATAGATTGTTTCGTTGGTGT 59.882 37.037 0.00 0.00 0.00 4.16
2249 2555 7.330946 TCAGTAGAATAGATTGTTTCGTTGGTG 59.669 37.037 0.00 0.00 0.00 4.17
2250 2556 7.383687 TCAGTAGAATAGATTGTTTCGTTGGT 58.616 34.615 0.00 0.00 0.00 3.67
2251 2557 7.545965 ACTCAGTAGAATAGATTGTTTCGTTGG 59.454 37.037 0.00 0.00 0.00 3.77
2252 2558 8.467402 ACTCAGTAGAATAGATTGTTTCGTTG 57.533 34.615 0.00 0.00 0.00 4.10
2253 2559 9.141400 GAACTCAGTAGAATAGATTGTTTCGTT 57.859 33.333 0.00 0.00 0.00 3.85
2254 2560 8.304596 TGAACTCAGTAGAATAGATTGTTTCGT 58.695 33.333 0.00 0.00 0.00 3.85
2255 2561 8.689251 TGAACTCAGTAGAATAGATTGTTTCG 57.311 34.615 0.00 0.00 0.00 3.46
2256 2562 9.862371 TCTGAACTCAGTAGAATAGATTGTTTC 57.138 33.333 6.61 0.00 44.12 2.78
2284 2590 4.682860 GTGGTATTCTCTTTCAACGAACGA 59.317 41.667 0.14 0.00 0.00 3.85
2287 2593 4.753107 GTGGTGGTATTCTCTTTCAACGAA 59.247 41.667 0.00 0.00 0.00 3.85
2290 2596 5.560183 CGTTGTGGTGGTATTCTCTTTCAAC 60.560 44.000 0.00 0.00 0.00 3.18
2303 2609 0.690762 ATCTAAGCCGTTGTGGTGGT 59.309 50.000 0.00 0.00 41.21 4.16
2362 2668 5.491078 TGTCCAGGATAACTCCACCTATTTT 59.509 40.000 0.00 0.00 44.79 1.82
2366 2672 3.769189 TGTCCAGGATAACTCCACCTA 57.231 47.619 0.00 0.00 44.79 3.08
2369 2675 3.964031 AGAGATGTCCAGGATAACTCCAC 59.036 47.826 17.02 0.00 44.79 4.02
2372 2678 5.076873 AGCTAGAGATGTCCAGGATAACTC 58.923 45.833 13.85 13.85 0.00 3.01
2373 2679 5.073437 AGCTAGAGATGTCCAGGATAACT 57.927 43.478 0.00 0.00 0.00 2.24
2374 2680 5.303078 TGAAGCTAGAGATGTCCAGGATAAC 59.697 44.000 0.00 0.00 0.00 1.89
2375 2681 5.303078 GTGAAGCTAGAGATGTCCAGGATAA 59.697 44.000 0.00 0.00 0.00 1.75
2376 2682 4.830046 GTGAAGCTAGAGATGTCCAGGATA 59.170 45.833 0.00 0.00 0.00 2.59
2377 2683 3.640967 GTGAAGCTAGAGATGTCCAGGAT 59.359 47.826 0.00 0.00 0.00 3.24
2400 2706 4.792068 TCTCAACTCCACTTCACCAAAAT 58.208 39.130 0.00 0.00 0.00 1.82
2411 2717 6.939163 AGCCAATATCAATATCTCAACTCCAC 59.061 38.462 0.00 0.00 0.00 4.02
2419 2725 8.503458 AATGCACTAGCCAATATCAATATCTC 57.497 34.615 0.00 0.00 41.13 2.75
2421 2727 9.350357 CAAAATGCACTAGCCAATATCAATATC 57.650 33.333 0.00 0.00 41.13 1.63
2422 2728 8.308931 CCAAAATGCACTAGCCAATATCAATAT 58.691 33.333 0.00 0.00 41.13 1.28
2423 2729 7.287466 ACCAAAATGCACTAGCCAATATCAATA 59.713 33.333 0.00 0.00 41.13 1.90
2424 2730 6.098695 ACCAAAATGCACTAGCCAATATCAAT 59.901 34.615 0.00 0.00 41.13 2.57
2425 2731 5.421693 ACCAAAATGCACTAGCCAATATCAA 59.578 36.000 0.00 0.00 41.13 2.57
2426 2732 4.955450 ACCAAAATGCACTAGCCAATATCA 59.045 37.500 0.00 0.00 41.13 2.15
2430 2736 3.164268 TCACCAAAATGCACTAGCCAAT 58.836 40.909 0.00 0.00 41.13 3.16
2432 2738 2.284754 TCACCAAAATGCACTAGCCA 57.715 45.000 0.00 0.00 41.13 4.75
2436 2742 7.575414 TTTCTAACTTCACCAAAATGCACTA 57.425 32.000 0.00 0.00 0.00 2.74
2440 2746 6.983890 TCCTTTTTCTAACTTCACCAAAATGC 59.016 34.615 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.