>input_sequence_79302
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-ATGAGCCCGGGGAGCGGGAAGCTGCGGTGGCTGTGGAGGGCGCCGGCGCGGGCGTTCGGCCGCGCGCGGGACTTCTACG
TGCGGAGCATCACGGGGTGCGCGCGCTACGTCCCGGCCGACGCGGCCTTCGGCGCCTATCCGGTGCTCGTGCCCGCGCCG
CTGTCCAGGAGCCAGAGCTGCGGCTCCGGCGCCGACTATGGCGGCGAGGAGGACCTCCGGGAGCTCATCCGAGCGGCCTC
GCAGAGGCGCGAAGGCGAGCAGCAGCGGCAGGCCGTCCATCTCCATGCCGTGCCCAGGAGCCAGAGCGTGGCGGGGGCGG
CGTCCATGGCGCCGATCGACGAGGACGCGCCGTGCGAGTTCGCCGGCGGCGCGGGCGCCACGCTCTACTCCCGCAGCCAG
AGCTACGCCGGCGGGGCCATGGGGCCCAGGAAGTCTCACTGCCACACTAAGATGTCGGCCTTGGGCTGA-----------
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>chr5B_1_TraesCS5B01G409800
GCTAGCTACGCCACTACCTCGAAGGGTCCTTCAATATGCAACTCCTATTTATTTTATTCCCTCCGTTTCATAGTTTTTGT
CATGGTTTTAGTTCCAAGTTAAACTAAAGTCACGATAAGAATTATGAAACAAATGGAGTATTTTGAAAGAAAGCTTCTTC
CCATGAGAAAAGAGAGGAGAAAAGACCGGAAAGCTAGTGTAAGCAGGTGAAATGTACTCAAAGTAATGTACGAATCCATC
TTCTAAGATACGTAGTACGAGCACGAATCATATGATTGGCGA--TCCATTACCGTCCGTCGTTATCTTTTCGCACTCTGC
A-AGCACCGACGGCGATGCCACGATGGCCACCAGACGCCAAACAGTCACGCGAATGCACCCGGCAGCGGAACCATCCAAG
CAGTCACGTCAAACTCCACCAGAAAAAGGCCAGCGTTTCTTTT-CCATTCTCAAATCCGGAAAGGCGCAGTCGCTCACAG
GATCAATCACACGCTCTTACCGGTGCACCAGACCTCATGGCTGGCTGAGTCACACCGCCAACTCACGCCCCTA-TCCGGT
GCTGTGTTGACCCGCTCCGTCTAGAAGACCGGAACAAAACAACGTGCACCAACGCGAGACGCCGAGTCGGCAACGTCGCC
GCC------------------------GTGGTGACCGCGCGCAGTTTCGCCCACTCCGCACTGGCGCGGAGGTCGTCCCC
GTCACCTACCATCCAC----ACCCGCGCCCCCCCCCCCGGCCCCGGCCCCGGCTCCCACCGGCCACCGGTACAAGAAGGC
GGCCACCCCACCACCACCACCAAAGACGCTCGAAACTCCAACCCAACCTAATCCATCATCACCATCATCCTCACCTTATT
AAACCAAAAACCCGCGCACCTGATCCTCCAGTGCTGTTCGCCATCACAGCGTCCGTGATAGAGAGTG-------TGATCC
TGCGCCTGGTAGCCCGGGGAGCAGGCGCAGCGTTCG-TTCTTGCAGGGAGAGTGGGTCGAGCGATCGGTCGGGAGGGTGG
CATGAGCCCGGGGAGCGGGAAGCTGCGGTGGCTGTGGAGGGCGCCGGCGCGGGCGTTCGGCCGCGCGCGGGACTTCTACG
TGCGGAGCATCACGGGGTGCGCGCGCTACGTCCCGGCCGACGCGGCCTTCGGCGCCTATCCGGTGCTCGTGCCCGCGCCG
CTGTCCAGGAGCCAGAGCTGCGGCTCCGGCGCCGACTATGGCGGCGAGGAGGACCTCCGGGAGCTCATCCGAGCGGCCTC
GCAGAGGCGCGAAGGCGAGCAGCAGCGGCAGGCCGTCCATCTCCATGCCGTGCCCAGGAGCCAGAGCGTGGCGGGGGCGG
CGTCCATGGCGCCGATCGACGAGGACGCGCCGTGCGAGTTCGCCGGCGGCGCGGGCGCCACGCTCTACTCCCGCAGCCAG
AGCTACGCCGGCGGGGCCATGGGGCCCAGGAAGTCTCACTGCCACACTAAGATGTCGGCCTTGGGCTGAGCTAGCTGCCG
TGCCGGCTGCTCCTGGACTGCTCGTGTGTGATCAGGT-------CATGCTTGCCAAAATTTGTTCATGCTGCTCCGATCC
ATCTAAAATTGGGATCTTGAGCTTGTAAATAGCACGATACAGGGAGGAATTCATGCATGTGTAATTTGCTTGTTTCGTTT
TACTCTCGGTTATGCTTCAAAAATCATGGGCTCCATGGTCATTCTCTTGTCTCTTGCTTGCATTGAAATGCCGGAATGAT
CATACAGTATAGATATTTGCAACTTGCCACCCACCGCCGGGTCACCGGTCACACGAGAGATTGAAAGCGCGGGCGATGCC
GTTCTTGAGCGGGCACACGATGAATGGC--------------------------ATGTCACAAGC-GCAGACATCAGTTG
TCTTGACATTCCTGTTGCCACCCCGAGGGCATTTGATACTCTCGGGCTCGGGACGACGGGACTATATTGATATTCCAGTC
GAGTTTTTTTTTCCGAAACGGAATTCCAGTCGAGTTTACAC---------------------------------------
-----------TAGTTTACAAAA---------------------------------------------------------
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------------------------------------CGCTGCTACCACCAAAGTTCGCAAGTCAT-TTTTTT-AGCCTAG
ATCAAGTCCATC-ATAAGTCTATGAACGTGTCAAACTAGTCAATTTTT-TCGTCTTTGACTCCGTAC---CTTATAATTG
CATCATACGTACTCCCTCCGTCCGAAAATACTTATCGCGAAAATGGACGTATCTAGACGTATTTTAGTTCTAGATACATT
CATTTTTATTCATTTCTTCGACGAGTATTTCCAGACGGAGGGACAAACAAACAACATCCCAAGCAGAACGCCAACACCAA
CGAAACAATCTATTCTACTGAGTTCAGATTCGTTCGTTGAAAGAGAATACCACCACAACGGCTTAGATTGCATTGGACAG
CTTAACTCCACAGTTTTATTAGAAAAAAAAATAGGTGGAGTTATCCTGGACATCTCTAGCTTCACATTTTGGTGAAGTGG
AGTTGAGATATTGATATTGGCTAGTGCATTTTGGTGAAGTTAGAAAAAGGATG
>chr5A_190
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-----------------------------AAAGATACTGTAAGCAGGTGAAACGTACTCAAAGTTATGTATAGTACGAAT
TCATGTAAAA--TAGTAGGAGCACGAATCATGATTGGCGCTGCCTCCATTACCGTCCGTCGTTATCTTTTTGGCATTCCG
CGAGCACCGACGGCGATGCCACGATGGCCACCAAACGCCAAACAGTCACGCGAATGCGCTCGGCAGCGGAACCATCCAAG
CAGTCACGTCAAACTCCACCAGAAAAAGGCCAGCGTTTCTTTTTCCCTTCTCAAATCCGGAAAGGCGCAGTCGCTCACAG
GATCA-TCACACCGTCTCACCGGTGCACCAGACCTCGTGGCTGTCTGAGTCACACCGCCAACTCACGCCCCTA-TCCGGT
GATGT-------------GTCTAGAAGACCGGAGCAAACCAACGTGCACCTACGCGGGACGCCGTCTCGGCCACGTCGCC
GCCGGAAGGAATACAGGGGATGCCACTGTGGTGACCGCGCGCAGTTTCGCCCACTCCGCACTGCCGCGGAGGTCGTCCCC
GTCACCTACCATCCAC----ACCCACGCGCCACG----------GG-CCCGGCTC-------CCACCGGTACAAGAAGGC
GGCCACCCCACCACCACCAC---AGACGCTCGAAACCCCAACCCAACCAAATCCATCATCGCCATCATCCCCACCTTATT
AAACCAAAG-CCCGCGCACCTGATCCTCCAGTGCTGTCCGCCATCACAGCGTCCGTGATAGTGCTGTGATCCGCTGATCC
TTCGCCTGGTAGCTCGGGGAGCAGGCGTAGCGTTCGTTTCTTGCAGGGAGAGTGGGTCGAGTGATCGGGCGGGCGGGTGG
CATGAGCCCGGGGAGCGGCAAGCTGCGGTGGCTGTGGAGGGCGCCGGCGCGGGCGTTCGGCCGCGCGCGGGACTTCTACG
TGCGGAGCATCACGGGGTGCGCGCGCTACGTCCCCGCCGACGCGGCCTTCGGCGCCTACCCGGTGCTCGTGCCCGCGCCG
CTGCCCAGGAGCCAGAGCTGCGGCTCCGGCGCCGACTACGGCGGCGAGGAGGACCTCCGGGAGCTCATCCGCGCGGCCTC
GCAGAGGCGCGATGTCGAGCAGCGGCGGCAGGCCGACCATCTCCATGCCGTGCCCAGGAGCCAGGGCGTGGCGGGGGCGG
CGTCCATGGCGCCGATCGACGAGGACGCGCCGTGCGAGTTCGCCGCTGGTGCGGGCGCCACGCTCTACTCCCGCAGTCAG
AGCTACGCCGGCGGGGCCATGGGGGCCAGGAAGTCTCACTGCCACAGCAAGGTGTCGGCCTTGGGCTGAGCTAGC-----
CGCCGGCTGCTCCTCAACTGCTCGTGTGTGATCAGGTTTCAGGTCATGCTTGCCAAAAATTGTTCATGTTGCTCCGATCC
ATCTGAAATTGGGATTTTCAGCTTGTAAATAT---GATACAGGGAGGAATTCATGCATGCGTAATTTGGTTGTTTCCTTG
TAGGCTCGATTATGCTTCAAAAATCATGGGCTCCATGGTCATTCTCTAGTACCTTGCTTGCAATGAAATGCCGGAATGAT
CATACAGTGTAGATATTTGCAACTCGCCACCCACCGCTGGGTCACCGGTCGCCCAAGAGATTGAAAGCGCGGGCGGTGCC
GTTCCGTAGCGGGCACACGATGAATGGCGACATGATTTT-CCAGTACATGGACCATGTCACATGCGGCAGACATCACTTG
TCTTGACATTCGTATTGCCA---------CATTTGATACTCTCGGGT--------------CTATATTGATATTCCAGTC
GAGTTTGCGTTAGTTTAC--------------------------------------------------------------
---------------------AA---------------------------------------------------------
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------------------------------------CGCTGCTACCGCCAAAGTTCACAAGTCAT-TTTTTTTAGCTTAG
ATCAGGTTCATAAATAGGTCTATGAACGTGTCAAACTTGTCAATTTTTCTCGTCTTTGACTCCGTAC---CTTATAATTG
CATCATAG------------------------------------------------------------------------
-----------------------------------------------CAAACAACATCCGCC------------------
---AACAATCTATTCTACTGAGTTCAGATACGCTCATTGAAAGAGAATGCCACCACAACGGCTTAGATTGCATTGGACAA
CTTAACTCCACAGTTTTATTAGAAAAATAAAGAGTTG------TCCTGGACATGTGTAGCTTCACGTTTTGGTGAACTGG
AGTTCA------GATGTCGGCCAGTTCATTTTGGTGAAGTTAGAAAAAGG---
>chr5D_323
ACAGAA--------------------------------------------------------------------------
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-----------GGCGATGCCACAATGGCCACCAGACGCCAAACAGTCACGAGAATACACCCGGCAACGGAACCATCCAAG
CAGTCACGTCAAGCTCCACCAGAAAAAGGCCAGCGTTTCTTTT-CCATTCTCAAATCCGGAAAGGCACAGTCGCTCACAA
GATCA-TCACACGGTCTCACCGGTGCACCAGACCTTAC----GGCTGAGTCACACCGCCAACTCACGCTCCTAATCCGGT
GCCGTGTTGACCCGCTCCGTCTAGAAGACCGGAGCAAAACAACGTGCACCAACGCGAAACGCCGAGTCGGCAACGTCGCC
GCC------------------------GTGGTGACCGCGCGCAGTTTCGCCCACTCCGCACTGGCGCGGAGGTCGTCCCC
GTCACCTACCATCCATCCATACCCGCGCGCCATG----------GGCCCCGGCTC-------CCACCGGTACAAGAAGGC
GGCCACCCCACCACCACCAG---AGACGCTCGAAACGCCAACCCAACCAAATCCATCATCGCCATCATCCCCACCTTATT
AAACCAAAAACCCGCGAACCTGATCCTCCAGTGCTGTCCGCCATCACAGCGTCCGTGATAGTGTTGTGATCCGCTGATCA
TTCGC-TGTTAGCTCGCGGAGCAAGC-TAGCGTTCGTTTCTTGCAGGGAGAGTG---------ATCGGTCGGGCGGGTGG
CATGAGCCCGGGGAGCGGCAAGCTGCGGTGGCTGTGGAGGGCGCCGGCGCGGGCGTTCGGGCGCGCGCGGGACTTCTACG
TGCGGAGCATCACGGGGTGCGCGCGCTACGTCCCCGCCGACGCGGCCTTCGGCGCCTACCCGGTGCTCGTGCCCGCGCCG
CTGCCAAGGAGCCAGAGCTGCGGCTCTGGCGCCGACTATGGCGGCGAGGAGGACCTCCGGGAGCTCATCCGCGCGGCCTC
GCAGAGGCGCGACGGCGAGCAGCAGCGGCAGGCCGACCGTCTCCATGCCGTGCCCAGGAGCCAGAGCGTGGCGGGGGCGG
CGTCCATGGCGCCGATCGACGAGGACGCGCCGTGCGAGTTCGCCGCCGGCGCGGGCGCCACGCTCTACTCCCGCAGCCAG
AGCTACGCCGGCGGCGCCATGGGGGCCAGGAAGTCTCACTGCCACAGCAAGGCGTCGGTCTTGGGCTGAGCTAGC-----
TGCCGGCTGCTCCTGGACTGCTCGTGTGTGA-------TCAGGTCATGCTTGCCAAAAATTGTTCATGCCGCTCCGATCC
ATCTGAAATTGGGATTTTGAGCTTGTAAAT---ACGATACAGGGAGGAATTCATGCATGTGTAATTTGCTTGCTTCGTTT
TAGTCTCGATTATGCTTCAAAAATCGTGGGCTCCATGGTCATTCTCTTGTCTCTTGCTTGCATTGAAATGCCGGAATGAT
CATACAGTATAGATATTTGCAACTTGCCACCTACCGCTGGGTCACCGGTCACACAAGAGATTGAAAGCGCGGGCGGTGCC
GTTCTGTAGCGGGCGCACGATGAATGGCGACATGATTTTTCCAGTACGTGGACCATGCCACATGC-GCAGACATCAGTGG
TCTT-ACATTCGTATTGCCACCCCGAAGGCATTTGATACTCTCGGGCT--------CGGGACTATATTGATATTCCAGTC
GAGTTTACACTACTCCATCCGTCCCATAATATAAGAGCGTTTTTGACACTACAAGTGTAAAAAACGCTCTTATATTATGG
GACGGAGGGAGTAGTTTACAAAACGCTGCTACAGTGGCGGCTCCAGGAATTTGCAACCGGGTATTCATATGTATTCATTT
TGTCAAAATCATTGTTGTTTTTTTGAAAATTATCACTTTTATCAAAATCAACACTGTTTTGTAAAAATCATGGGTATTCA
CATGAAGACCCAAGAATACCCCTAGCGCCGCCCCTGCGCTGCTACCACCAAAGTTCGCAAGTCATCTTTTTT-AGCTTAG
ATCAAGTCCATA-ATAAGTCTATGAACGTGTCAAACTTGTCAATTTTTCTCGTCTTTGACTCCGTACCTGCTTATAATTG
CATCATAC------------------------------------------------------------------------
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>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S--S---------------S-----------S-----SSSSS-S-SS
-SS-SSS-S-SS-----S-------------SSSSSSS--SS----------------------------S-SSS-SSSS
S-------------------------------------------------------------------------------
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-----S-------S---S--------------------------------------------------------------
---------------------------------S----------------------------------------------
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----------------------------S--S-SSSSSSSSSSS-----------SSSSSSS------------------
--------------------SSS-------------S-----------S-----------S---------S---------
-------------------------------------S-----------------------S-SSSS-------------
-S-----------S-------------S---------------------------------S-----------S------
------------------S-------------------------------------------------------------
----------------------------------S-----------------------S---------------------
---S-------------------------------------------------------------------S--------
------------S----------------------S--------------------------------------------
---------------------------------------------S----------------------------------
------------------------S---------------------SS---S-----------------------SSSSS
----------------------------------------------------------S---------------------
----S----------S---------------SS-----------------------------------------------
--S-----S-----------------------------------------------------------------------
-------------------------------------S----------------S--------------------S----
-----SS-------------------------------------------------------S-----------------
-----------S-S------------S---------------------SSSSSSSS------------------------
------SSS--S-SSS-S-S-SSSSSS-S-SS-SSSSSSSS---------------------------------------
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----------------------------------------------------------------------------S---
-----------S-------------------------S------------------------------------------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------SSSSSSSSSSSSSSSSSSSSS
SSS--------------------------S--S--S------------S------------------------------S
---------------------------S---S--S--SSSSSS----------S-S---------S----------S---
----S-SSSSSS---S-S---S---S------------------------SSS
>forward_22
--TAGCTACGCCACTACCTCGA----------------------------------------------------------
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>reverse_1487
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----------------------------------------------CTAAGATGTCGGCCTTGGGC--------------
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>forward_24
----GCTACGCCACTACCTCGAAG--------------------------------------------------------
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>reverse_1969
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------------------------------------------------CGGGACGACGGGACTATATTG-----------
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