Multiple sequence alignment - TraesCS5B01G400400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G400400 chr5B 100.000 2734 0 0 1 2734 577376391 577373658 0.000000e+00 5049.0
1 TraesCS5B01G400400 chr5B 79.464 224 38 8 80 299 622620583 622620364 4.720000e-33 152.0
2 TraesCS5B01G400400 chr5B 77.246 167 33 5 133 298 617049029 617048867 2.900000e-15 93.5
3 TraesCS5B01G400400 chr5B 96.970 33 1 0 43 75 577374333 577374301 3.800000e-04 56.5
4 TraesCS5B01G400400 chr5B 96.970 33 1 0 2059 2091 577376349 577376317 3.800000e-04 56.5
5 TraesCS5B01G400400 chr5D 86.943 1976 109 61 1 1947 469738760 469736905 0.000000e+00 2082.0
6 TraesCS5B01G400400 chr5D 91.960 398 21 5 2100 2494 469736578 469736189 5.150000e-152 547.0
7 TraesCS5B01G400400 chr5A 88.358 1151 53 27 830 1947 590696072 590694970 0.000000e+00 1308.0
8 TraesCS5B01G400400 chr5A 91.591 440 22 6 406 840 590696699 590696270 6.520000e-166 593.0
9 TraesCS5B01G400400 chr5A 88.562 306 18 9 2175 2475 590693682 590693389 3.350000e-94 355.0
10 TraesCS5B01G400400 chr5A 86.598 97 13 0 142 238 40926044 40925948 1.040000e-19 108.0
11 TraesCS5B01G400400 chr5A 87.931 58 6 1 2488 2544 590686754 590686697 1.760000e-07 67.6
12 TraesCS5B01G400400 chr3B 80.556 216 38 4 82 296 764240909 764241121 2.180000e-36 163.0
13 TraesCS5B01G400400 chr3B 77.723 202 38 5 84 282 130131973 130132170 1.720000e-22 117.0
14 TraesCS5B01G400400 chr4A 78.241 216 44 3 83 298 598048284 598048072 4.750000e-28 135.0
15 TraesCS5B01G400400 chrUn 79.891 184 32 3 118 298 311940028 311939847 2.210000e-26 130.0
16 TraesCS5B01G400400 chr6B 79.144 187 34 3 115 298 717633288 717633472 1.030000e-24 124.0
17 TraesCS5B01G400400 chr3A 79.720 143 28 1 154 296 60691659 60691800 4.820000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G400400 chr5B 577373658 577376391 2733 True 1720.666667 5049 97.980000 1 2734 3 chr5B.!!$R3 2733
1 TraesCS5B01G400400 chr5D 469736189 469738760 2571 True 1314.500000 2082 89.451500 1 2494 2 chr5D.!!$R1 2493
2 TraesCS5B01G400400 chr5A 590693389 590696699 3310 True 752.000000 1308 89.503667 406 2475 3 chr5A.!!$R3 2069

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
354 356 0.097674 GTGCGTTCACATGGATGAGC 59.902 55.0 0.0 0.0 42.66 4.26 F
1387 1646 0.031721 GACTCGGTTCGTCTGGTGTT 59.968 55.0 0.0 0.0 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1389 1648 0.109458 AACACTGCAATGCATGAGCG 60.109 50.0 8.91 13.92 46.23 5.03 R
2669 4134 0.027979 CTTCATTATGGCGTGGCGTG 59.972 55.0 0.00 0.00 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 9.696917 AATTACTTGATTTTGGCTAGTCAAAAG 57.303 29.630 31.96 23.36 45.84 2.27
61 62 5.662211 TTTTGGCTAGTCAAAAGACGTAC 57.338 39.130 27.12 0.00 40.41 3.67
62 63 4.595762 TTGGCTAGTCAAAAGACGTACT 57.404 40.909 7.46 0.00 0.00 2.73
63 64 5.710513 TTGGCTAGTCAAAAGACGTACTA 57.289 39.130 7.46 0.00 0.00 1.82
69 70 9.956720 GGCTAGTCAAAAGACGTACTATTATAA 57.043 33.333 0.00 0.00 0.00 0.98
80 81 9.947669 AGACGTACTATTATAATCTGTCAACAC 57.052 33.333 0.00 0.00 0.00 3.32
99 100 3.579586 ACACGTGGTTGGATAGTTAGGAA 59.420 43.478 21.57 0.00 0.00 3.36
109 110 4.042311 TGGATAGTTAGGAAAACAGTGGCA 59.958 41.667 0.00 0.00 0.00 4.92
112 113 6.152831 GGATAGTTAGGAAAACAGTGGCATTT 59.847 38.462 0.00 0.00 0.00 2.32
114 115 5.842907 AGTTAGGAAAACAGTGGCATTTTC 58.157 37.500 13.73 13.73 41.87 2.29
135 136 1.707427 AGCCCATCAAGGTTCAAGTCT 59.293 47.619 0.00 0.00 34.66 3.24
136 137 2.108952 AGCCCATCAAGGTTCAAGTCTT 59.891 45.455 0.00 0.00 34.66 3.01
137 138 3.330701 AGCCCATCAAGGTTCAAGTCTTA 59.669 43.478 0.00 0.00 34.66 2.10
140 141 5.749462 CCCATCAAGGTTCAAGTCTTAGAT 58.251 41.667 0.00 0.00 34.66 1.98
152 153 6.223852 TCAAGTCTTAGATTTGACACTGGTC 58.776 40.000 14.73 0.00 44.57 4.02
153 154 5.153950 AGTCTTAGATTTGACACTGGTCC 57.846 43.478 0.00 0.00 43.65 4.46
164 165 1.880027 ACACTGGTCCTCGCATTTTTC 59.120 47.619 0.00 0.00 0.00 2.29
166 167 2.095567 CACTGGTCCTCGCATTTTTCTG 60.096 50.000 0.00 0.00 0.00 3.02
176 178 8.925700 GTCCTCGCATTTTTCTGAATTTATTTT 58.074 29.630 0.00 0.00 0.00 1.82
190 192 6.209788 TGAATTTATTTTAGGCCTTTCGGTGT 59.790 34.615 12.58 0.00 0.00 4.16
195 197 0.887387 TAGGCCTTTCGGTGTTGTGC 60.887 55.000 12.58 0.00 0.00 4.57
201 203 0.375454 TTTCGGTGTTGTGCGTTCAG 59.625 50.000 0.00 0.00 0.00 3.02
205 207 1.355210 GTGTTGTGCGTTCAGTGGG 59.645 57.895 0.00 0.00 0.00 4.61
206 208 1.092921 GTGTTGTGCGTTCAGTGGGA 61.093 55.000 0.00 0.00 0.00 4.37
207 209 0.813610 TGTTGTGCGTTCAGTGGGAG 60.814 55.000 0.00 0.00 0.00 4.30
208 210 0.531974 GTTGTGCGTTCAGTGGGAGA 60.532 55.000 0.00 0.00 0.00 3.71
219 221 5.105716 CGTTCAGTGGGAGAAGATCTTTCTA 60.106 44.000 9.87 0.00 0.00 2.10
285 287 1.446272 GTCCCCGCTCAGTCTTTCG 60.446 63.158 0.00 0.00 0.00 3.46
295 297 0.318441 CAGTCTTTCGGAGGTGCTCA 59.682 55.000 0.00 0.00 31.08 4.26
296 298 1.066573 CAGTCTTTCGGAGGTGCTCAT 60.067 52.381 0.00 0.00 31.08 2.90
297 299 2.166459 CAGTCTTTCGGAGGTGCTCATA 59.834 50.000 0.00 0.00 31.08 2.15
298 300 3.034635 AGTCTTTCGGAGGTGCTCATAT 58.965 45.455 0.00 0.00 31.08 1.78
299 301 3.068873 AGTCTTTCGGAGGTGCTCATATC 59.931 47.826 0.00 0.00 31.08 1.63
300 302 3.068873 GTCTTTCGGAGGTGCTCATATCT 59.931 47.826 0.00 0.00 31.08 1.98
301 303 3.706594 TCTTTCGGAGGTGCTCATATCTT 59.293 43.478 0.00 0.00 31.08 2.40
302 304 4.162320 TCTTTCGGAGGTGCTCATATCTTT 59.838 41.667 0.00 0.00 31.08 2.52
303 305 3.735237 TCGGAGGTGCTCATATCTTTC 57.265 47.619 0.00 0.00 31.08 2.62
304 306 3.031013 TCGGAGGTGCTCATATCTTTCA 58.969 45.455 0.00 0.00 31.08 2.69
305 307 3.068732 TCGGAGGTGCTCATATCTTTCAG 59.931 47.826 0.00 0.00 31.08 3.02
306 308 3.068732 CGGAGGTGCTCATATCTTTCAGA 59.931 47.826 0.00 0.00 31.08 3.27
307 309 4.630111 GGAGGTGCTCATATCTTTCAGAG 58.370 47.826 0.00 0.00 31.08 3.35
308 310 4.502950 GGAGGTGCTCATATCTTTCAGAGG 60.503 50.000 0.00 0.00 31.08 3.69
309 311 4.036518 AGGTGCTCATATCTTTCAGAGGT 58.963 43.478 0.00 0.00 0.00 3.85
310 312 4.125703 GGTGCTCATATCTTTCAGAGGTG 58.874 47.826 0.00 0.00 0.00 4.00
311 313 3.559242 GTGCTCATATCTTTCAGAGGTGC 59.441 47.826 0.00 0.00 0.00 5.01
312 314 3.453717 TGCTCATATCTTTCAGAGGTGCT 59.546 43.478 0.00 0.00 0.00 4.40
313 315 4.057432 GCTCATATCTTTCAGAGGTGCTC 58.943 47.826 0.00 0.00 0.00 4.26
314 316 4.442612 GCTCATATCTTTCAGAGGTGCTCA 60.443 45.833 0.00 0.00 32.06 4.26
330 332 2.758423 TGCTCATAGATGTACGGTGTGT 59.242 45.455 0.00 0.00 0.00 3.72
336 338 1.881973 AGATGTACGGTGTGTGTACGT 59.118 47.619 0.00 0.00 44.00 3.57
346 348 3.276021 TGTGTACGTGCGTTCACAT 57.724 47.368 25.25 0.00 46.26 3.21
354 356 0.097674 GTGCGTTCACATGGATGAGC 59.902 55.000 0.00 0.00 42.66 4.26
369 371 4.202253 TGGATGAGCTTATGTATGAGCGTT 60.202 41.667 0.00 0.00 43.38 4.84
442 444 9.636965 GTGTTAAAGAAAATCTGCAAATTGAAC 57.363 29.630 0.00 0.00 0.00 3.18
492 494 0.107456 ATGCCTATCAAGCGTCCAGG 59.893 55.000 0.00 0.00 0.00 4.45
519 525 1.141053 CTCCAATGGCTACCCTACCAC 59.859 57.143 0.00 0.00 39.19 4.16
520 526 1.213296 CCAATGGCTACCCTACCACT 58.787 55.000 0.00 0.00 39.19 4.00
521 527 2.022820 TCCAATGGCTACCCTACCACTA 60.023 50.000 0.00 0.00 39.19 2.74
522 528 2.104281 CCAATGGCTACCCTACCACTAC 59.896 54.545 0.00 0.00 39.19 2.73
523 529 2.098618 ATGGCTACCCTACCACTACC 57.901 55.000 0.00 0.00 39.19 3.18
524 530 0.711782 TGGCTACCCTACCACTACCA 59.288 55.000 0.00 0.00 0.00 3.25
596 602 1.966451 CCGCCCCAAAGTCAGTCAC 60.966 63.158 0.00 0.00 0.00 3.67
603 609 0.947244 CAAAGTCAGTCACCCACAGC 59.053 55.000 0.00 0.00 0.00 4.40
638 647 0.188587 AGATCTAGATCCCACGGGCA 59.811 55.000 25.88 0.00 38.58 5.36
865 1091 3.055747 CGCCTCTCCTCTTTTTAAGACCT 60.056 47.826 0.00 0.00 33.12 3.85
866 1092 4.563786 CGCCTCTCCTCTTTTTAAGACCTT 60.564 45.833 0.00 0.00 33.12 3.50
869 1095 4.652822 TCTCCTCTTTTTAAGACCTTGGC 58.347 43.478 0.00 0.00 33.12 4.52
952 1188 3.715628 TTGAAGAAGCAAGAAACAGCC 57.284 42.857 0.00 0.00 0.00 4.85
978 1216 4.452733 CTCGTCGCCCCTGGTTCC 62.453 72.222 0.00 0.00 0.00 3.62
1092 1336 0.366871 CGACGGCGAACAAGATCAAG 59.633 55.000 16.62 0.00 40.82 3.02
1193 1437 4.479121 CGCGCGCGGTTACTTCAC 62.479 66.667 43.28 10.21 35.56 3.18
1194 1438 3.110178 GCGCGCGGTTACTTCACT 61.110 61.111 33.06 0.00 0.00 3.41
1195 1439 2.664436 GCGCGCGGTTACTTCACTT 61.664 57.895 33.06 0.00 0.00 3.16
1196 1440 1.857364 CGCGCGGTTACTTCACTTT 59.143 52.632 24.84 0.00 0.00 2.66
1208 1452 6.128715 GGTTACTTCACTTTACTCTTTACGCC 60.129 42.308 0.00 0.00 0.00 5.68
1209 1453 5.211174 ACTTCACTTTACTCTTTACGCCT 57.789 39.130 0.00 0.00 0.00 5.52
1210 1454 6.336842 ACTTCACTTTACTCTTTACGCCTA 57.663 37.500 0.00 0.00 0.00 3.93
1211 1455 6.388278 ACTTCACTTTACTCTTTACGCCTAG 58.612 40.000 0.00 0.00 0.00 3.02
1329 1573 2.143925 CTTTCTTTCTTTCTCCGCCGT 58.856 47.619 0.00 0.00 0.00 5.68
1339 1586 4.274459 TCTTTCTCCGCCGTAATACTCTAC 59.726 45.833 0.00 0.00 0.00 2.59
1340 1587 2.498167 TCTCCGCCGTAATACTCTACC 58.502 52.381 0.00 0.00 0.00 3.18
1341 1588 2.105477 TCTCCGCCGTAATACTCTACCT 59.895 50.000 0.00 0.00 0.00 3.08
1342 1589 2.483491 CTCCGCCGTAATACTCTACCTC 59.517 54.545 0.00 0.00 0.00 3.85
1343 1590 1.538950 CCGCCGTAATACTCTACCTCC 59.461 57.143 0.00 0.00 0.00 4.30
1344 1591 1.196354 CGCCGTAATACTCTACCTCCG 59.804 57.143 0.00 0.00 0.00 4.63
1345 1592 1.538950 GCCGTAATACTCTACCTCCGG 59.461 57.143 0.00 0.00 37.29 5.14
1346 1593 1.538950 CCGTAATACTCTACCTCCGGC 59.461 57.143 0.00 0.00 0.00 6.13
1347 1594 1.538950 CGTAATACTCTACCTCCGGCC 59.461 57.143 0.00 0.00 0.00 6.13
1348 1595 1.538950 GTAATACTCTACCTCCGGCCG 59.461 57.143 21.04 21.04 0.00 6.13
1349 1596 0.826672 AATACTCTACCTCCGGCCGG 60.827 60.000 39.13 39.13 0.00 6.13
1375 1634 2.936912 GCTGGCTGACTGACTCGGT 61.937 63.158 0.00 0.00 0.00 4.69
1376 1635 1.668294 CTGGCTGACTGACTCGGTT 59.332 57.895 0.00 0.00 0.00 4.44
1382 1641 0.591659 TGACTGACTCGGTTCGTCTG 59.408 55.000 0.00 0.00 36.69 3.51
1386 1645 1.105167 TGACTCGGTTCGTCTGGTGT 61.105 55.000 0.00 0.00 32.70 4.16
1387 1646 0.031721 GACTCGGTTCGTCTGGTGTT 59.968 55.000 0.00 0.00 0.00 3.32
1388 1647 0.249322 ACTCGGTTCGTCTGGTGTTG 60.249 55.000 0.00 0.00 0.00 3.33
1389 1648 1.557443 CTCGGTTCGTCTGGTGTTGC 61.557 60.000 0.00 0.00 0.00 4.17
1390 1649 2.935955 GGTTCGTCTGGTGTTGCG 59.064 61.111 0.00 0.00 0.00 4.85
1391 1650 2.248431 GTTCGTCTGGTGTTGCGC 59.752 61.111 0.00 0.00 0.00 6.09
1392 1651 2.108157 TTCGTCTGGTGTTGCGCT 59.892 55.556 9.73 0.00 0.00 5.92
1393 1652 1.954146 TTCGTCTGGTGTTGCGCTC 60.954 57.895 9.73 2.14 0.00 5.03
1394 1653 2.636778 TTCGTCTGGTGTTGCGCTCA 62.637 55.000 9.73 5.24 0.00 4.26
1395 1654 2.029288 CGTCTGGTGTTGCGCTCAT 61.029 57.895 9.73 0.00 0.00 2.90
1396 1655 1.499056 GTCTGGTGTTGCGCTCATG 59.501 57.895 9.73 3.66 0.00 3.07
1397 1656 2.177531 CTGGTGTTGCGCTCATGC 59.822 61.111 9.73 0.00 0.00 4.06
1398 1657 2.594013 TGGTGTTGCGCTCATGCA 60.594 55.556 9.73 0.00 44.61 3.96
1399 1658 1.929806 CTGGTGTTGCGCTCATGCAT 61.930 55.000 9.73 0.00 45.78 3.96
1747 2006 2.548280 CGGTCTAGTCTAGCCGATCTGA 60.548 54.545 25.91 0.00 43.39 3.27
1757 2016 0.676184 GCCGATCTGATCTGGTGCTA 59.324 55.000 21.21 0.00 0.00 3.49
1776 2035 1.217882 AGTTCCGAGCTCGTTTGTTG 58.782 50.000 32.41 17.32 37.74 3.33
1777 2036 0.935196 GTTCCGAGCTCGTTTGTTGT 59.065 50.000 32.41 0.00 37.74 3.32
1778 2037 1.329599 GTTCCGAGCTCGTTTGTTGTT 59.670 47.619 32.41 0.00 37.74 2.83
1783 2042 2.599848 CGAGCTCGTTTGTTGTTTGGAG 60.600 50.000 27.79 0.00 34.11 3.86
1785 2044 2.752903 AGCTCGTTTGTTGTTTGGAGTT 59.247 40.909 0.00 0.00 0.00 3.01
1788 2047 4.099380 TCGTTTGTTGTTTGGAGTTTCC 57.901 40.909 0.00 0.00 36.96 3.13
1825 2090 5.530915 TCATTTCTTTGGTGTGTGTTCCTAG 59.469 40.000 0.00 0.00 0.00 3.02
1826 2091 3.485463 TCTTTGGTGTGTGTTCCTAGG 57.515 47.619 0.82 0.82 0.00 3.02
1827 2092 3.042682 TCTTTGGTGTGTGTTCCTAGGA 58.957 45.455 7.62 7.62 0.00 2.94
1828 2093 3.650942 TCTTTGGTGTGTGTTCCTAGGAT 59.349 43.478 13.57 0.00 0.00 3.24
1829 2094 4.841813 TCTTTGGTGTGTGTTCCTAGGATA 59.158 41.667 13.57 1.81 0.00 2.59
1830 2095 4.819105 TTGGTGTGTGTTCCTAGGATAG 57.181 45.455 13.57 0.00 38.80 2.08
1862 2135 3.047877 GCCACGGACGTTCTTGGG 61.048 66.667 20.21 6.24 0.00 4.12
1866 2139 0.944311 CACGGACGTTCTTGGGTGAG 60.944 60.000 0.00 0.00 0.00 3.51
1888 2162 4.114997 GCGGTGTGGATTTGCGGG 62.115 66.667 0.00 0.00 0.00 6.13
1916 2190 1.064952 GGTTACCGGCGGATTGATTTG 59.935 52.381 35.78 2.05 0.00 2.32
1947 2221 0.681733 GAGTGCACTGGACTGGAGAA 59.318 55.000 27.27 0.00 0.00 2.87
1949 2223 1.701847 AGTGCACTGGACTGGAGAAAT 59.298 47.619 20.97 0.00 0.00 2.17
1952 2226 2.284190 GCACTGGACTGGAGAAATAGC 58.716 52.381 0.00 0.00 0.00 2.97
1953 2227 2.544685 CACTGGACTGGAGAAATAGCG 58.455 52.381 0.00 0.00 0.00 4.26
1954 2228 2.093973 CACTGGACTGGAGAAATAGCGT 60.094 50.000 0.00 0.00 0.00 5.07
1955 2229 3.130516 CACTGGACTGGAGAAATAGCGTA 59.869 47.826 0.00 0.00 0.00 4.42
1956 2230 3.130693 ACTGGACTGGAGAAATAGCGTAC 59.869 47.826 0.00 0.00 0.00 3.67
1957 2231 3.362706 TGGACTGGAGAAATAGCGTACT 58.637 45.455 0.00 0.00 0.00 2.73
1958 2232 4.529897 TGGACTGGAGAAATAGCGTACTA 58.470 43.478 0.00 0.00 0.00 1.82
2002 2281 2.407090 CGTTCATCAGTTGCTCTGTGA 58.593 47.619 8.75 8.87 43.97 3.58
2012 2291 4.447054 CAGTTGCTCTGTGAAGAAGTAGTG 59.553 45.833 2.20 0.00 39.17 2.74
2017 2296 6.002082 TGCTCTGTGAAGAAGTAGTGTACTA 58.998 40.000 0.00 0.00 38.26 1.82
2068 2417 3.712907 GGCGGGGTGGCTAGTCAA 61.713 66.667 0.00 0.00 40.72 3.18
2069 2418 2.349755 GCGGGGTGGCTAGTCAAA 59.650 61.111 0.00 0.00 0.00 2.69
2071 2420 1.305930 GCGGGGTGGCTAGTCAAAAG 61.306 60.000 0.00 0.00 0.00 2.27
2072 2421 0.323629 CGGGGTGGCTAGTCAAAAGA 59.676 55.000 0.00 0.00 0.00 2.52
2073 2422 1.822506 GGGGTGGCTAGTCAAAAGAC 58.177 55.000 0.00 0.00 0.00 3.01
2074 2423 1.439679 GGGTGGCTAGTCAAAAGACG 58.560 55.000 0.00 0.00 0.00 4.18
2075 2424 1.270678 GGGTGGCTAGTCAAAAGACGT 60.271 52.381 0.00 0.00 0.00 4.34
2077 2426 2.991866 GGTGGCTAGTCAAAAGACGTAC 59.008 50.000 0.00 0.00 0.00 3.67
2078 2427 3.305881 GGTGGCTAGTCAAAAGACGTACT 60.306 47.826 0.00 0.00 0.00 2.73
2079 2428 4.082571 GGTGGCTAGTCAAAAGACGTACTA 60.083 45.833 0.00 0.00 0.00 1.82
2080 2429 5.393896 GGTGGCTAGTCAAAAGACGTACTAT 60.394 44.000 0.00 0.00 0.00 2.12
2081 2430 6.098017 GTGGCTAGTCAAAAGACGTACTATT 58.902 40.000 0.00 0.00 0.00 1.73
2083 2432 7.919621 GTGGCTAGTCAAAAGACGTACTATTAT 59.080 37.037 0.00 0.00 0.00 1.28
2133 3439 2.764269 AGGATTTAGCTGCTACTGGGA 58.236 47.619 9.27 0.00 0.00 4.37
2140 3446 0.461961 GCTGCTACTGGGACCTAGTG 59.538 60.000 20.14 11.08 0.00 2.74
2286 3748 1.375908 CGAACCAGCCAAGCTAGCA 60.376 57.895 18.83 0.00 36.40 3.49
2325 3790 1.727467 GCGTTGGATACCACATGGC 59.273 57.895 0.00 0.00 39.32 4.40
2366 3831 2.435693 GGGGACAGAGGATCCACCG 61.436 68.421 15.82 2.11 44.74 4.94
2382 3847 2.159028 CCACCGGTTCCACATTTGTTTT 60.159 45.455 2.97 0.00 0.00 2.43
2401 3866 2.813908 ATCGCGACCCGTGCTTTC 60.814 61.111 12.93 0.00 37.28 2.62
2421 3886 0.609131 CCCGTCTTCATTTGTGGGCT 60.609 55.000 0.00 0.00 0.00 5.19
2485 3950 5.175859 CGTTGCTCATTAACTCCTTCCTAA 58.824 41.667 0.00 0.00 0.00 2.69
2487 3952 6.174049 GTTGCTCATTAACTCCTTCCTAAGT 58.826 40.000 0.00 0.00 0.00 2.24
2494 3959 8.705594 TCATTAACTCCTTCCTAAGTTCCTATG 58.294 37.037 0.00 0.00 37.02 2.23
2495 3960 5.959583 AACTCCTTCCTAAGTTCCTATGG 57.040 43.478 0.00 0.00 29.89 2.74
2496 3961 4.961585 ACTCCTTCCTAAGTTCCTATGGT 58.038 43.478 0.00 0.00 0.00 3.55
2497 3962 4.963628 ACTCCTTCCTAAGTTCCTATGGTC 59.036 45.833 0.00 0.00 0.00 4.02
2498 3963 4.296056 TCCTTCCTAAGTTCCTATGGTCC 58.704 47.826 0.00 0.00 0.00 4.46
2499 3964 4.015541 TCCTTCCTAAGTTCCTATGGTCCT 60.016 45.833 0.00 0.00 0.00 3.85
2500 3965 5.197189 TCCTTCCTAAGTTCCTATGGTCCTA 59.803 44.000 0.00 0.00 0.00 2.94
2501 3966 6.085416 CCTTCCTAAGTTCCTATGGTCCTAT 58.915 44.000 0.00 0.00 0.00 2.57
2502 3967 6.211785 CCTTCCTAAGTTCCTATGGTCCTATC 59.788 46.154 0.00 0.00 0.00 2.08
2503 3968 6.547396 TCCTAAGTTCCTATGGTCCTATCT 57.453 41.667 0.00 0.00 0.00 1.98
2504 3969 6.315714 TCCTAAGTTCCTATGGTCCTATCTG 58.684 44.000 0.00 0.00 0.00 2.90
2505 3970 5.482175 CCTAAGTTCCTATGGTCCTATCTGG 59.518 48.000 0.00 0.00 37.10 3.86
2506 3971 3.863086 AGTTCCTATGGTCCTATCTGGG 58.137 50.000 0.00 0.00 36.20 4.45
2507 3972 3.471306 AGTTCCTATGGTCCTATCTGGGA 59.529 47.826 0.00 0.00 36.20 4.37
2508 3973 4.077982 AGTTCCTATGGTCCTATCTGGGAA 60.078 45.833 0.00 0.00 37.10 3.97
2509 3974 3.858135 TCCTATGGTCCTATCTGGGAAC 58.142 50.000 0.00 0.00 43.04 3.62
2510 3975 2.563179 CCTATGGTCCTATCTGGGAACG 59.437 54.545 0.00 0.00 45.52 3.95
2511 3976 2.176247 ATGGTCCTATCTGGGAACGT 57.824 50.000 0.00 0.00 45.52 3.99
2512 3977 1.191535 TGGTCCTATCTGGGAACGTG 58.808 55.000 0.00 0.00 45.52 4.49
2513 3978 1.272816 TGGTCCTATCTGGGAACGTGA 60.273 52.381 0.00 0.00 45.52 4.35
2514 3979 1.829222 GGTCCTATCTGGGAACGTGAA 59.171 52.381 0.00 0.00 37.10 3.18
2515 3980 2.418334 GGTCCTATCTGGGAACGTGAAC 60.418 54.545 0.00 0.00 37.10 3.18
2516 3981 2.232941 GTCCTATCTGGGAACGTGAACA 59.767 50.000 0.00 0.00 37.10 3.18
2517 3982 2.901192 TCCTATCTGGGAACGTGAACAA 59.099 45.455 0.00 0.00 36.20 2.83
2518 3983 3.325425 TCCTATCTGGGAACGTGAACAAA 59.675 43.478 0.00 0.00 36.20 2.83
2519 3984 3.435671 CCTATCTGGGAACGTGAACAAAC 59.564 47.826 0.00 0.00 0.00 2.93
2520 3985 1.670791 TCTGGGAACGTGAACAAACC 58.329 50.000 0.00 0.00 0.00 3.27
2521 3986 1.065345 TCTGGGAACGTGAACAAACCA 60.065 47.619 0.00 0.00 0.00 3.67
2522 3987 1.746220 CTGGGAACGTGAACAAACCAA 59.254 47.619 0.00 0.00 0.00 3.67
2523 3988 1.746220 TGGGAACGTGAACAAACCAAG 59.254 47.619 0.00 0.00 0.00 3.61
2524 3989 1.066454 GGGAACGTGAACAAACCAAGG 59.934 52.381 0.00 0.00 0.00 3.61
2525 3990 1.535226 GGAACGTGAACAAACCAAGGC 60.535 52.381 0.00 0.00 0.00 4.35
2526 3991 1.133407 GAACGTGAACAAACCAAGGCA 59.867 47.619 0.00 0.00 0.00 4.75
2527 3992 0.454196 ACGTGAACAAACCAAGGCAC 59.546 50.000 0.00 0.00 0.00 5.01
2528 3993 0.248866 CGTGAACAAACCAAGGCACC 60.249 55.000 0.00 0.00 0.00 5.01
2529 3994 0.820871 GTGAACAAACCAAGGCACCA 59.179 50.000 0.00 0.00 0.00 4.17
2530 3995 1.110442 TGAACAAACCAAGGCACCAG 58.890 50.000 0.00 0.00 0.00 4.00
2531 3996 1.341482 TGAACAAACCAAGGCACCAGA 60.341 47.619 0.00 0.00 0.00 3.86
2532 3997 1.754226 GAACAAACCAAGGCACCAGAA 59.246 47.619 0.00 0.00 0.00 3.02
2533 3998 1.859302 ACAAACCAAGGCACCAGAAA 58.141 45.000 0.00 0.00 0.00 2.52
2534 3999 1.480545 ACAAACCAAGGCACCAGAAAC 59.519 47.619 0.00 0.00 0.00 2.78
2535 4000 1.480137 CAAACCAAGGCACCAGAAACA 59.520 47.619 0.00 0.00 0.00 2.83
2536 4001 1.402787 AACCAAGGCACCAGAAACAG 58.597 50.000 0.00 0.00 0.00 3.16
2537 4002 0.550914 ACCAAGGCACCAGAAACAGA 59.449 50.000 0.00 0.00 0.00 3.41
2538 4003 1.064017 ACCAAGGCACCAGAAACAGAA 60.064 47.619 0.00 0.00 0.00 3.02
2539 4004 1.610522 CCAAGGCACCAGAAACAGAAG 59.389 52.381 0.00 0.00 0.00 2.85
2540 4005 1.610522 CAAGGCACCAGAAACAGAAGG 59.389 52.381 0.00 0.00 0.00 3.46
2541 4006 0.111253 AGGCACCAGAAACAGAAGGG 59.889 55.000 0.00 0.00 0.00 3.95
2542 4007 0.895559 GGCACCAGAAACAGAAGGGG 60.896 60.000 0.00 0.00 0.00 4.79
2543 4008 0.895559 GCACCAGAAACAGAAGGGGG 60.896 60.000 0.00 0.00 0.00 5.40
2544 4009 0.771127 CACCAGAAACAGAAGGGGGA 59.229 55.000 0.00 0.00 0.00 4.81
2545 4010 1.144913 CACCAGAAACAGAAGGGGGAA 59.855 52.381 0.00 0.00 0.00 3.97
2546 4011 1.425448 ACCAGAAACAGAAGGGGGAAG 59.575 52.381 0.00 0.00 0.00 3.46
2547 4012 1.705186 CCAGAAACAGAAGGGGGAAGA 59.295 52.381 0.00 0.00 0.00 2.87
2548 4013 2.108250 CCAGAAACAGAAGGGGGAAGAA 59.892 50.000 0.00 0.00 0.00 2.52
2549 4014 3.436470 CCAGAAACAGAAGGGGGAAGAAA 60.436 47.826 0.00 0.00 0.00 2.52
2550 4015 4.215109 CAGAAACAGAAGGGGGAAGAAAA 58.785 43.478 0.00 0.00 0.00 2.29
2551 4016 4.835056 CAGAAACAGAAGGGGGAAGAAAAT 59.165 41.667 0.00 0.00 0.00 1.82
2552 4017 5.305386 CAGAAACAGAAGGGGGAAGAAAATT 59.695 40.000 0.00 0.00 0.00 1.82
2553 4018 5.540337 AGAAACAGAAGGGGGAAGAAAATTC 59.460 40.000 0.00 0.00 0.00 2.17
2554 4019 3.779444 ACAGAAGGGGGAAGAAAATTCC 58.221 45.455 0.00 0.00 37.86 3.01
2562 4027 1.202348 GGAAGAAAATTCCCCAGTGCG 59.798 52.381 0.00 0.00 32.48 5.34
2563 4028 1.202348 GAAGAAAATTCCCCAGTGCGG 59.798 52.381 0.00 0.00 0.00 5.69
2564 4029 0.404040 AGAAAATTCCCCAGTGCGGA 59.596 50.000 0.00 0.00 36.56 5.54
2565 4030 1.203001 AGAAAATTCCCCAGTGCGGAA 60.203 47.619 11.63 11.63 43.43 4.30
2566 4031 1.202348 GAAAATTCCCCAGTGCGGAAG 59.798 52.381 14.40 0.00 42.56 3.46
2594 4059 4.351874 TTTCCCTGAAACAGACAGTAGG 57.648 45.455 0.00 0.00 32.44 3.18
2595 4060 2.257207 TCCCTGAAACAGACAGTAGGG 58.743 52.381 0.00 0.00 42.71 3.53
2596 4061 2.158219 TCCCTGAAACAGACAGTAGGGA 60.158 50.000 5.74 5.74 46.06 4.20
2597 4062 2.028020 CCCTGAAACAGACAGTAGGGAC 60.028 54.545 0.00 0.00 43.64 4.46
2598 4063 2.028020 CCTGAAACAGACAGTAGGGACC 60.028 54.545 0.00 0.00 32.44 4.46
2599 4064 1.975680 TGAAACAGACAGTAGGGACCC 59.024 52.381 0.59 0.59 0.00 4.46
2600 4065 2.258109 GAAACAGACAGTAGGGACCCT 58.742 52.381 19.48 19.48 37.71 4.34
2601 4066 1.645710 AACAGACAGTAGGGACCCTG 58.354 55.000 24.42 10.14 34.61 4.45
2602 4067 0.252284 ACAGACAGTAGGGACCCTGG 60.252 60.000 24.42 14.55 34.61 4.45
2603 4068 0.252284 CAGACAGTAGGGACCCTGGT 60.252 60.000 24.42 17.70 34.61 4.00
2604 4069 1.006758 CAGACAGTAGGGACCCTGGTA 59.993 57.143 24.42 0.00 34.61 3.25
2605 4070 1.288335 AGACAGTAGGGACCCTGGTAG 59.712 57.143 24.42 12.36 34.61 3.18
2606 4071 1.287146 GACAGTAGGGACCCTGGTAGA 59.713 57.143 24.42 0.00 34.61 2.59
2607 4072 1.006878 ACAGTAGGGACCCTGGTAGAC 59.993 57.143 24.42 12.82 34.61 2.59
2608 4073 0.258194 AGTAGGGACCCTGGTAGACG 59.742 60.000 24.42 0.00 34.61 4.18
2609 4074 0.033699 GTAGGGACCCTGGTAGACGT 60.034 60.000 24.42 0.00 34.61 4.34
2610 4075 1.212935 GTAGGGACCCTGGTAGACGTA 59.787 57.143 24.42 0.00 34.61 3.57
2611 4076 0.258194 AGGGACCCTGGTAGACGTAG 59.742 60.000 13.95 0.00 29.57 3.51
2612 4077 1.390383 GGGACCCTGGTAGACGTAGC 61.390 65.000 2.09 0.00 0.00 3.58
2613 4078 0.682209 GGACCCTGGTAGACGTAGCA 60.682 60.000 0.00 0.00 35.36 3.49
2614 4079 0.455005 GACCCTGGTAGACGTAGCAC 59.545 60.000 0.00 0.00 33.10 4.40
2615 4080 0.251474 ACCCTGGTAGACGTAGCACA 60.251 55.000 0.00 0.00 33.10 4.57
2616 4081 0.892755 CCCTGGTAGACGTAGCACAA 59.107 55.000 0.00 0.00 33.10 3.33
2617 4082 1.403780 CCCTGGTAGACGTAGCACAAC 60.404 57.143 0.00 0.00 33.10 3.32
2619 4084 1.198408 CTGGTAGACGTAGCACAACGA 59.802 52.381 12.36 0.00 45.68 3.85
2620 4085 1.198408 TGGTAGACGTAGCACAACGAG 59.802 52.381 12.36 0.00 45.68 4.18
2621 4086 1.257539 GTAGACGTAGCACAACGAGC 58.742 55.000 12.36 5.01 45.68 5.03
2622 4087 1.135746 GTAGACGTAGCACAACGAGCT 60.136 52.381 12.36 10.76 45.68 4.09
2623 4088 0.314302 AGACGTAGCACAACGAGCTT 59.686 50.000 12.36 0.00 45.68 3.74
2624 4089 1.137513 GACGTAGCACAACGAGCTTT 58.862 50.000 12.36 0.00 45.68 3.51
2625 4090 2.030540 AGACGTAGCACAACGAGCTTTA 60.031 45.455 12.36 0.00 45.68 1.85
2626 4091 2.921754 GACGTAGCACAACGAGCTTTAT 59.078 45.455 12.36 0.00 45.68 1.40
2627 4092 2.666508 ACGTAGCACAACGAGCTTTATG 59.333 45.455 12.36 0.00 45.68 1.90
2628 4093 2.029244 CGTAGCACAACGAGCTTTATGG 59.971 50.000 0.00 0.00 45.68 2.74
2629 4094 2.472695 AGCACAACGAGCTTTATGGA 57.527 45.000 0.00 0.00 39.87 3.41
2630 4095 2.350522 AGCACAACGAGCTTTATGGAG 58.649 47.619 0.00 0.00 39.87 3.86
2631 4096 2.076863 GCACAACGAGCTTTATGGAGT 58.923 47.619 0.00 0.00 0.00 3.85
2632 4097 2.159653 GCACAACGAGCTTTATGGAGTG 60.160 50.000 0.00 0.00 0.00 3.51
2633 4098 3.067106 CACAACGAGCTTTATGGAGTGT 58.933 45.455 0.00 0.00 0.00 3.55
2634 4099 3.067106 ACAACGAGCTTTATGGAGTGTG 58.933 45.455 0.00 0.00 0.00 3.82
2635 4100 3.067106 CAACGAGCTTTATGGAGTGTGT 58.933 45.455 0.00 0.00 0.00 3.72
2636 4101 2.960819 ACGAGCTTTATGGAGTGTGTC 58.039 47.619 0.00 0.00 0.00 3.67
2637 4102 2.299013 ACGAGCTTTATGGAGTGTGTCA 59.701 45.455 0.00 0.00 0.00 3.58
2638 4103 3.055819 ACGAGCTTTATGGAGTGTGTCAT 60.056 43.478 0.00 0.00 0.00 3.06
2639 4104 4.159693 ACGAGCTTTATGGAGTGTGTCATA 59.840 41.667 0.00 0.00 0.00 2.15
2640 4105 4.504461 CGAGCTTTATGGAGTGTGTCATAC 59.496 45.833 0.00 0.00 0.00 2.39
2641 4106 5.419542 GAGCTTTATGGAGTGTGTCATACA 58.580 41.667 2.32 0.00 36.82 2.29
2642 4107 5.804639 AGCTTTATGGAGTGTGTCATACAA 58.195 37.500 2.32 0.00 41.89 2.41
2643 4108 5.877012 AGCTTTATGGAGTGTGTCATACAAG 59.123 40.000 2.32 0.00 41.89 3.16
2644 4109 5.874810 GCTTTATGGAGTGTGTCATACAAGA 59.125 40.000 2.32 0.00 41.89 3.02
2645 4110 6.183360 GCTTTATGGAGTGTGTCATACAAGAC 60.183 42.308 2.32 0.00 41.89 3.01
2646 4111 3.297830 TGGAGTGTGTCATACAAGACG 57.702 47.619 2.32 0.00 41.89 4.18
2647 4112 1.993370 GGAGTGTGTCATACAAGACGC 59.007 52.381 2.32 0.00 46.45 5.19
2651 4116 1.359848 GTGTCATACAAGACGCAGGG 58.640 55.000 0.00 0.00 45.77 4.45
2652 4117 0.391130 TGTCATACAAGACGCAGGGC 60.391 55.000 0.00 0.00 41.41 5.19
2666 4131 4.175337 GGGCGGATGCACCAGCTA 62.175 66.667 2.35 0.00 45.35 3.32
2667 4132 2.111878 GGCGGATGCACCAGCTAT 59.888 61.111 2.35 0.00 45.35 2.97
2668 4133 2.256591 GGCGGATGCACCAGCTATG 61.257 63.158 2.35 0.00 45.35 2.23
2669 4134 2.901292 GCGGATGCACCAGCTATGC 61.901 63.158 13.89 13.89 43.68 3.14
2674 4139 3.880846 GCACCAGCTATGCACGCC 61.881 66.667 15.48 0.00 42.88 5.68
2675 4140 2.436469 CACCAGCTATGCACGCCA 60.436 61.111 6.22 0.00 0.00 5.69
2676 4141 2.436646 ACCAGCTATGCACGCCAC 60.437 61.111 6.22 0.00 0.00 5.01
2677 4142 3.566853 CCAGCTATGCACGCCACG 61.567 66.667 6.22 0.00 0.00 4.94
2678 4143 4.228097 CAGCTATGCACGCCACGC 62.228 66.667 6.22 0.00 0.00 5.34
2681 4146 2.896854 CTATGCACGCCACGCCAT 60.897 61.111 0.00 0.00 0.00 4.40
2682 4147 1.594021 CTATGCACGCCACGCCATA 60.594 57.895 0.00 0.00 0.00 2.74
2683 4148 1.153349 TATGCACGCCACGCCATAA 60.153 52.632 0.00 0.00 0.00 1.90
2684 4149 0.533978 TATGCACGCCACGCCATAAT 60.534 50.000 0.00 0.00 0.00 1.28
2685 4150 2.024588 GCACGCCACGCCATAATG 59.975 61.111 0.00 0.00 0.00 1.90
2686 4151 2.468670 GCACGCCACGCCATAATGA 61.469 57.895 0.00 0.00 0.00 2.57
2687 4152 1.987704 GCACGCCACGCCATAATGAA 61.988 55.000 0.00 0.00 0.00 2.57
2688 4153 0.027979 CACGCCACGCCATAATGAAG 59.972 55.000 0.00 0.00 0.00 3.02
2689 4154 0.107897 ACGCCACGCCATAATGAAGA 60.108 50.000 0.00 0.00 0.00 2.87
2690 4155 1.229428 CGCCACGCCATAATGAAGAT 58.771 50.000 0.00 0.00 0.00 2.40
2691 4156 1.195448 CGCCACGCCATAATGAAGATC 59.805 52.381 0.00 0.00 0.00 2.75
2692 4157 2.221169 GCCACGCCATAATGAAGATCA 58.779 47.619 0.00 0.00 0.00 2.92
2693 4158 2.816087 GCCACGCCATAATGAAGATCAT 59.184 45.455 0.00 0.00 39.09 2.45
2709 4174 8.743085 TGAAGATCATTAGTAACCGTACTAGT 57.257 34.615 0.00 0.00 42.46 2.57
2710 4175 9.836864 TGAAGATCATTAGTAACCGTACTAGTA 57.163 33.333 0.00 0.00 42.46 1.82
2712 4177 9.844257 AAGATCATTAGTAACCGTACTAGTACT 57.156 33.333 26.36 13.84 42.46 2.73
2721 4186 9.289782 AGTAACCGTACTAGTACTAATTATGGG 57.710 37.037 26.36 19.86 38.87 4.00
2722 4187 7.530426 AACCGTACTAGTACTAATTATGGGG 57.470 40.000 26.36 19.27 34.04 4.96
2723 4188 6.852404 ACCGTACTAGTACTAATTATGGGGA 58.148 40.000 26.36 0.77 34.04 4.81
2724 4189 7.297614 ACCGTACTAGTACTAATTATGGGGAA 58.702 38.462 26.36 0.00 34.04 3.97
2725 4190 7.231519 ACCGTACTAGTACTAATTATGGGGAAC 59.768 40.741 26.36 1.87 34.04 3.62
2726 4191 7.231317 CCGTACTAGTACTAATTATGGGGAACA 59.769 40.741 26.36 0.00 34.04 3.18
2727 4192 8.078596 CGTACTAGTACTAATTATGGGGAACAC 58.921 40.741 26.36 1.19 34.04 3.32
2728 4193 7.047460 ACTAGTACTAATTATGGGGAACACG 57.953 40.000 3.76 0.00 0.00 4.49
2729 4194 6.835488 ACTAGTACTAATTATGGGGAACACGA 59.165 38.462 3.76 0.00 0.00 4.35
2730 4195 5.910614 AGTACTAATTATGGGGAACACGAC 58.089 41.667 0.00 0.00 0.00 4.34
2731 4196 5.659971 AGTACTAATTATGGGGAACACGACT 59.340 40.000 0.00 0.00 0.00 4.18
2732 4197 5.019785 ACTAATTATGGGGAACACGACTC 57.980 43.478 0.00 0.00 0.00 3.36
2733 4198 2.596904 ATTATGGGGAACACGACTCG 57.403 50.000 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 9.691362 GACTAGCCAAAATCAAGTAATTTCAAA 57.309 29.630 0.00 0.00 0.00 2.69
30 31 9.077885 TCTTTTGACTAGCCAAAATCAAGTAAT 57.922 29.630 16.03 0.00 42.81 1.89
55 56 8.889975 CGTGTTGACAGATTATAATAGTACGTC 58.110 37.037 0.00 2.41 0.00 4.34
61 62 8.420374 AACCACGTGTTGACAGATTATAATAG 57.580 34.615 15.65 0.00 35.31 1.73
80 81 4.998672 TGTTTTCCTAACTATCCAACCACG 59.001 41.667 0.00 0.00 0.00 4.94
91 92 5.362430 TGAAAATGCCACTGTTTTCCTAACT 59.638 36.000 7.78 0.00 41.38 2.24
94 95 4.261994 GCTGAAAATGCCACTGTTTTCCTA 60.262 41.667 7.78 0.00 41.38 2.94
109 110 3.509442 TGAACCTTGATGGGCTGAAAAT 58.491 40.909 0.00 0.00 41.11 1.82
112 113 2.158475 ACTTGAACCTTGATGGGCTGAA 60.158 45.455 0.00 0.00 41.11 3.02
114 115 1.815003 GACTTGAACCTTGATGGGCTG 59.185 52.381 0.00 0.00 41.11 4.85
135 136 3.616560 GCGAGGACCAGTGTCAAATCTAA 60.617 47.826 0.00 0.00 43.65 2.10
136 137 2.094182 GCGAGGACCAGTGTCAAATCTA 60.094 50.000 0.00 0.00 43.65 1.98
137 138 1.338200 GCGAGGACCAGTGTCAAATCT 60.338 52.381 0.00 0.00 43.65 2.40
140 141 0.396435 ATGCGAGGACCAGTGTCAAA 59.604 50.000 0.00 0.00 43.65 2.69
184 186 1.153529 ACTGAACGCACAACACCGA 60.154 52.632 0.00 0.00 0.00 4.69
190 192 0.179234 TTCTCCCACTGAACGCACAA 59.821 50.000 0.00 0.00 0.00 3.33
195 197 3.601443 AAGATCTTCTCCCACTGAACG 57.399 47.619 0.88 0.00 0.00 3.95
201 203 5.776173 TCGATAGAAAGATCTTCTCCCAC 57.224 43.478 8.78 0.00 46.15 4.61
240 242 7.545965 ATCATTTCTGAGATTTACGAAGTCGTT 59.454 33.333 12.14 0.00 41.74 3.85
242 244 6.871044 TCATTTCTGAGATTTACGAAGTCG 57.129 37.500 0.00 0.00 43.93 4.18
249 251 5.237344 CGGGGACATCATTTCTGAGATTTAC 59.763 44.000 0.00 0.00 34.12 2.01
251 253 4.202441 CGGGGACATCATTTCTGAGATTT 58.798 43.478 0.00 0.00 34.12 2.17
253 255 2.486191 GCGGGGACATCATTTCTGAGAT 60.486 50.000 0.00 0.00 34.12 2.75
259 261 1.303309 CTGAGCGGGGACATCATTTC 58.697 55.000 0.00 0.00 0.00 2.17
264 266 0.250513 AAAGACTGAGCGGGGACATC 59.749 55.000 0.00 0.00 0.00 3.06
285 287 4.502950 CCTCTGAAAGATATGAGCACCTCC 60.503 50.000 0.00 0.00 45.62 4.30
295 297 7.235193 ACATCTATGAGCACCTCTGAAAGATAT 59.765 37.037 0.00 0.00 45.62 1.63
296 298 6.552725 ACATCTATGAGCACCTCTGAAAGATA 59.447 38.462 0.00 0.00 45.62 1.98
297 299 5.366186 ACATCTATGAGCACCTCTGAAAGAT 59.634 40.000 0.00 0.00 45.62 2.40
298 300 4.713814 ACATCTATGAGCACCTCTGAAAGA 59.286 41.667 0.00 0.00 43.69 2.52
299 301 5.021033 ACATCTATGAGCACCTCTGAAAG 57.979 43.478 0.00 0.00 0.00 2.62
300 302 5.450550 CGTACATCTATGAGCACCTCTGAAA 60.451 44.000 0.00 0.00 0.00 2.69
301 303 4.036852 CGTACATCTATGAGCACCTCTGAA 59.963 45.833 0.00 0.00 0.00 3.02
302 304 3.565902 CGTACATCTATGAGCACCTCTGA 59.434 47.826 0.00 0.00 0.00 3.27
303 305 3.304996 CCGTACATCTATGAGCACCTCTG 60.305 52.174 0.00 0.00 0.00 3.35
304 306 2.887783 CCGTACATCTATGAGCACCTCT 59.112 50.000 0.00 0.00 0.00 3.69
305 307 2.623889 ACCGTACATCTATGAGCACCTC 59.376 50.000 0.00 0.00 0.00 3.85
306 308 2.362397 CACCGTACATCTATGAGCACCT 59.638 50.000 0.00 0.00 0.00 4.00
307 309 2.100916 ACACCGTACATCTATGAGCACC 59.899 50.000 0.00 0.00 0.00 5.01
308 310 3.116300 CACACCGTACATCTATGAGCAC 58.884 50.000 0.00 0.00 0.00 4.40
309 311 2.758423 ACACACCGTACATCTATGAGCA 59.242 45.455 0.00 0.00 0.00 4.26
310 312 3.116300 CACACACCGTACATCTATGAGC 58.884 50.000 0.00 0.00 0.00 4.26
311 313 4.371855 ACACACACCGTACATCTATGAG 57.628 45.455 0.00 0.00 0.00 2.90
312 314 4.201841 CGTACACACACCGTACATCTATGA 60.202 45.833 0.00 0.00 39.36 2.15
313 315 4.033019 CGTACACACACCGTACATCTATG 58.967 47.826 0.00 0.00 39.36 2.23
314 316 3.691118 ACGTACACACACCGTACATCTAT 59.309 43.478 0.00 0.00 39.36 1.98
336 338 0.036105 AGCTCATCCATGTGAACGCA 60.036 50.000 0.00 0.00 0.00 5.24
346 348 3.321968 ACGCTCATACATAAGCTCATCCA 59.678 43.478 0.00 0.00 36.35 3.41
354 356 5.663795 AGATGCAAACGCTCATACATAAG 57.336 39.130 0.00 0.00 0.00 1.73
438 440 2.409378 GCGTATTTCGAAAGTCGGTTCA 59.591 45.455 26.50 2.04 40.88 3.18
442 444 1.323534 CCAGCGTATTTCGAAAGTCGG 59.676 52.381 26.50 16.68 40.88 4.79
519 525 1.886313 CAGAGCCTGCGCATGGTAG 60.886 63.158 17.33 9.51 37.52 3.18
520 526 2.187685 CAGAGCCTGCGCATGGTA 59.812 61.111 17.33 0.00 37.52 3.25
521 527 4.025858 ACAGAGCCTGCGCATGGT 62.026 61.111 17.33 17.33 37.52 3.55
522 528 3.506096 CACAGAGCCTGCGCATGG 61.506 66.667 12.24 16.07 37.52 3.66
523 529 2.330372 AACACAGAGCCTGCGCATG 61.330 57.895 12.24 10.09 37.52 4.06
524 530 2.033141 AACACAGAGCCTGCGCAT 59.967 55.556 12.24 0.00 37.52 4.73
638 647 4.265056 GTGGTTGAGGGGCCGTGT 62.265 66.667 2.05 0.00 0.00 4.49
754 768 4.446413 ATCGTGGCCGTCCGTTCC 62.446 66.667 0.00 0.00 35.01 3.62
794 808 3.706373 GGAACTCTGGAGGCGCCA 61.706 66.667 31.54 10.29 46.96 5.69
795 809 3.672295 CTGGAACTCTGGAGGCGCC 62.672 68.421 21.89 21.89 37.10 6.53
796 810 2.125350 CTGGAACTCTGGAGGCGC 60.125 66.667 0.00 0.00 0.00 6.53
844 1070 4.561500 AGGTCTTAAAAAGAGGAGAGGC 57.438 45.455 0.00 0.00 38.41 4.70
966 1204 4.452733 GACGAGGAACCAGGGGCG 62.453 72.222 0.00 0.00 0.00 6.13
1191 1435 4.745649 AGCTAGGCGTAAAGAGTAAAGTG 58.254 43.478 0.00 0.00 0.00 3.16
1192 1436 5.402997 AAGCTAGGCGTAAAGAGTAAAGT 57.597 39.130 0.00 0.00 0.00 2.66
1193 1437 4.499758 CGAAGCTAGGCGTAAAGAGTAAAG 59.500 45.833 0.00 0.00 0.00 1.85
1194 1438 4.156556 TCGAAGCTAGGCGTAAAGAGTAAA 59.843 41.667 0.00 0.00 0.00 2.01
1195 1439 3.691118 TCGAAGCTAGGCGTAAAGAGTAA 59.309 43.478 0.00 0.00 0.00 2.24
1196 1440 3.273434 TCGAAGCTAGGCGTAAAGAGTA 58.727 45.455 0.00 0.00 0.00 2.59
1287 1531 2.278332 AGAAAGAAAGAAAGGCGGCT 57.722 45.000 5.25 5.25 0.00 5.52
1290 1534 6.499172 AGAAAGAAAGAAAGAAAGAAAGGCG 58.501 36.000 0.00 0.00 0.00 5.52
1291 1535 8.709386 AAAGAAAGAAAGAAAGAAAGAAAGGC 57.291 30.769 0.00 0.00 0.00 4.35
1365 1612 0.822532 ACCAGACGAACCGAGTCAGT 60.823 55.000 0.00 0.00 40.84 3.41
1375 1634 1.954146 GAGCGCAACACCAGACGAA 60.954 57.895 11.47 0.00 0.00 3.85
1376 1635 2.355837 GAGCGCAACACCAGACGA 60.356 61.111 11.47 0.00 0.00 4.20
1382 1641 1.074319 CAATGCATGAGCGCAACACC 61.074 55.000 11.47 5.27 46.87 4.16
1386 1645 1.153920 CTGCAATGCATGAGCGCAA 60.154 52.632 8.91 0.00 46.87 4.85
1388 1647 1.872234 CACTGCAATGCATGAGCGC 60.872 57.895 8.91 0.00 46.23 5.92
1389 1648 0.109458 AACACTGCAATGCATGAGCG 60.109 50.000 8.91 13.92 46.23 5.03
1390 1649 1.201647 AGAACACTGCAATGCATGAGC 59.798 47.619 8.91 15.41 38.13 4.26
1391 1650 3.688185 AGTAGAACACTGCAATGCATGAG 59.312 43.478 8.91 4.21 38.13 2.90
1392 1651 3.678289 AGTAGAACACTGCAATGCATGA 58.322 40.909 8.91 0.00 38.13 3.07
1393 1652 4.392754 TGTAGTAGAACACTGCAATGCATG 59.607 41.667 8.91 11.79 45.56 4.06
1394 1653 4.578871 TGTAGTAGAACACTGCAATGCAT 58.421 39.130 8.91 0.00 45.56 3.96
1395 1654 4.001618 TGTAGTAGAACACTGCAATGCA 57.998 40.909 7.99 7.99 45.56 3.96
1718 1977 0.465824 TAGACTAGACCGCCCTGAGC 60.466 60.000 0.00 0.00 38.52 4.26
1757 2016 1.217882 CAACAAACGAGCTCGGAACT 58.782 50.000 36.93 16.06 44.95 3.01
1776 2035 2.375014 TGGGGAAGGAAACTCCAAAC 57.625 50.000 0.00 0.00 42.68 2.93
1777 2036 3.628832 AATGGGGAAGGAAACTCCAAA 57.371 42.857 0.00 0.00 42.68 3.28
1778 2037 3.142028 AGAAATGGGGAAGGAAACTCCAA 59.858 43.478 0.00 0.00 42.68 3.53
1783 2042 5.745312 AATGAAGAAATGGGGAAGGAAAC 57.255 39.130 0.00 0.00 0.00 2.78
1785 2044 5.654370 AGAAATGAAGAAATGGGGAAGGAA 58.346 37.500 0.00 0.00 0.00 3.36
1788 2047 6.168389 CCAAAGAAATGAAGAAATGGGGAAG 58.832 40.000 0.00 0.00 0.00 3.46
1825 2090 2.549778 GCACTGCCATTCTCTCCTATCC 60.550 54.545 0.00 0.00 0.00 2.59
1826 2091 2.765122 GCACTGCCATTCTCTCCTATC 58.235 52.381 0.00 0.00 0.00 2.08
1827 2092 2.926778 GCACTGCCATTCTCTCCTAT 57.073 50.000 0.00 0.00 0.00 2.57
1841 2110 1.594293 AAGAACGTCCGTGGCACTG 60.594 57.895 16.72 9.65 0.00 3.66
1852 2121 2.674177 CGCTAATCTCACCCAAGAACGT 60.674 50.000 0.00 0.00 0.00 3.99
1862 2135 2.604046 ATCCACACCGCTAATCTCAC 57.396 50.000 0.00 0.00 0.00 3.51
1866 2139 1.268032 CGCAAATCCACACCGCTAATC 60.268 52.381 0.00 0.00 0.00 1.75
1916 2190 2.286294 CAGTGCACTCTTCACACTTGAC 59.714 50.000 18.64 0.00 42.59 3.18
1971 2245 5.231147 GCAACTGATGAACGCAAAGTTAAAA 59.769 36.000 0.00 0.00 44.35 1.52
1977 2256 2.225019 AGAGCAACTGATGAACGCAAAG 59.775 45.455 0.00 0.00 0.00 2.77
1979 2258 1.882912 AGAGCAACTGATGAACGCAA 58.117 45.000 0.00 0.00 0.00 4.85
1990 2269 4.100189 ACACTACTTCTTCACAGAGCAACT 59.900 41.667 0.00 0.00 0.00 3.16
2030 2309 0.895530 TGCCGAAACCACACCAAAAA 59.104 45.000 0.00 0.00 0.00 1.94
2035 2384 3.656045 CCGTGCCGAAACCACACC 61.656 66.667 0.00 0.00 32.85 4.16
2054 2403 1.822506 GTCTTTTGACTAGCCACCCC 58.177 55.000 0.00 0.00 45.55 4.95
2058 2407 5.909621 ATAGTACGTCTTTTGACTAGCCA 57.090 39.130 0.00 0.00 46.76 4.75
2088 3394 9.546428 CTAACCATCACATAATAATCAGTCACA 57.454 33.333 0.00 0.00 0.00 3.58
2101 3407 5.997746 GCAGCTAAATCCTAACCATCACATA 59.002 40.000 0.00 0.00 0.00 2.29
2102 3408 4.823989 GCAGCTAAATCCTAACCATCACAT 59.176 41.667 0.00 0.00 0.00 3.21
2103 3409 4.080356 AGCAGCTAAATCCTAACCATCACA 60.080 41.667 0.00 0.00 0.00 3.58
2104 3410 4.455606 AGCAGCTAAATCCTAACCATCAC 58.544 43.478 0.00 0.00 0.00 3.06
2105 3411 4.778213 AGCAGCTAAATCCTAACCATCA 57.222 40.909 0.00 0.00 0.00 3.07
2107 3413 5.455326 CCAGTAGCAGCTAAATCCTAACCAT 60.455 44.000 2.87 0.00 0.00 3.55
2109 3415 4.381411 CCAGTAGCAGCTAAATCCTAACC 58.619 47.826 2.87 0.00 0.00 2.85
2110 3416 4.101119 TCCCAGTAGCAGCTAAATCCTAAC 59.899 45.833 2.87 0.00 0.00 2.34
2119 3425 1.569548 ACTAGGTCCCAGTAGCAGCTA 59.430 52.381 0.00 0.00 0.00 3.32
2133 3439 4.521536 TGATAGGACTACTGCACTAGGT 57.478 45.455 5.52 0.00 0.00 3.08
2140 3446 1.000283 AGCGCATGATAGGACTACTGC 60.000 52.381 11.47 0.00 0.00 4.40
2224 3684 4.814294 CTGCCGGCCAGGTACGTC 62.814 72.222 26.77 0.00 43.70 4.34
2226 3686 4.077184 TTCTGCCGGCCAGGTACG 62.077 66.667 26.77 3.36 42.05 3.67
2227 3687 2.125106 CTTCTGCCGGCCAGGTAC 60.125 66.667 26.77 0.00 42.05 3.34
2228 3688 4.096003 GCTTCTGCCGGCCAGGTA 62.096 66.667 26.77 2.93 42.05 3.08
2286 3748 0.179089 GACGCATGTGATCTCCTGCT 60.179 55.000 14.43 9.07 32.48 4.24
2325 3790 1.724582 GATCCGCATTGAAACCGGGG 61.725 60.000 6.32 0.00 42.18 5.73
2366 3831 3.428534 GCGATGAAAACAAATGTGGAACC 59.571 43.478 0.00 0.00 34.36 3.62
2382 3847 3.583276 AAAGCACGGGTCGCGATGA 62.583 57.895 14.06 0.00 0.00 2.92
2401 3866 1.595093 GCCCACAAATGAAGACGGGG 61.595 60.000 0.00 0.00 37.16 5.73
2421 3886 2.760799 GCCATGCTCCATTGCCCA 60.761 61.111 0.00 0.00 0.00 5.36
2485 3950 3.471306 TCCCAGATAGGACCATAGGAACT 59.529 47.826 0.00 0.00 41.49 3.01
2487 3952 4.232091 GTTCCCAGATAGGACCATAGGAA 58.768 47.826 0.00 0.00 41.22 3.36
2494 3959 1.481871 TCACGTTCCCAGATAGGACC 58.518 55.000 0.00 0.00 41.22 4.46
2495 3960 2.232941 TGTTCACGTTCCCAGATAGGAC 59.767 50.000 0.00 0.00 41.22 3.85
2496 3961 2.531771 TGTTCACGTTCCCAGATAGGA 58.468 47.619 0.00 0.00 41.22 2.94
2497 3962 3.328382 TTGTTCACGTTCCCAGATAGG 57.672 47.619 0.00 0.00 37.03 2.57
2498 3963 3.435671 GGTTTGTTCACGTTCCCAGATAG 59.564 47.826 0.00 0.00 0.00 2.08
2499 3964 3.181453 TGGTTTGTTCACGTTCCCAGATA 60.181 43.478 0.00 0.00 0.00 1.98
2500 3965 2.227194 GGTTTGTTCACGTTCCCAGAT 58.773 47.619 0.00 0.00 0.00 2.90
2501 3966 1.065345 TGGTTTGTTCACGTTCCCAGA 60.065 47.619 0.00 0.00 0.00 3.86
2502 3967 1.384525 TGGTTTGTTCACGTTCCCAG 58.615 50.000 0.00 0.00 0.00 4.45
2503 3968 1.746220 CTTGGTTTGTTCACGTTCCCA 59.254 47.619 0.00 0.00 0.00 4.37
2504 3969 1.066454 CCTTGGTTTGTTCACGTTCCC 59.934 52.381 0.00 0.00 0.00 3.97
2505 3970 1.535226 GCCTTGGTTTGTTCACGTTCC 60.535 52.381 0.00 0.00 0.00 3.62
2506 3971 1.133407 TGCCTTGGTTTGTTCACGTTC 59.867 47.619 0.00 0.00 0.00 3.95
2507 3972 1.135228 GTGCCTTGGTTTGTTCACGTT 60.135 47.619 0.00 0.00 0.00 3.99
2508 3973 0.454196 GTGCCTTGGTTTGTTCACGT 59.546 50.000 0.00 0.00 0.00 4.49
2509 3974 0.248866 GGTGCCTTGGTTTGTTCACG 60.249 55.000 0.00 0.00 0.00 4.35
2510 3975 0.820871 TGGTGCCTTGGTTTGTTCAC 59.179 50.000 0.00 0.00 0.00 3.18
2511 3976 1.110442 CTGGTGCCTTGGTTTGTTCA 58.890 50.000 0.00 0.00 0.00 3.18
2512 3977 1.398692 TCTGGTGCCTTGGTTTGTTC 58.601 50.000 0.00 0.00 0.00 3.18
2513 3978 1.859302 TTCTGGTGCCTTGGTTTGTT 58.141 45.000 0.00 0.00 0.00 2.83
2514 3979 1.480545 GTTTCTGGTGCCTTGGTTTGT 59.519 47.619 0.00 0.00 0.00 2.83
2515 3980 1.480137 TGTTTCTGGTGCCTTGGTTTG 59.520 47.619 0.00 0.00 0.00 2.93
2516 3981 1.756538 CTGTTTCTGGTGCCTTGGTTT 59.243 47.619 0.00 0.00 0.00 3.27
2517 3982 1.064017 TCTGTTTCTGGTGCCTTGGTT 60.064 47.619 0.00 0.00 0.00 3.67
2518 3983 0.550914 TCTGTTTCTGGTGCCTTGGT 59.449 50.000 0.00 0.00 0.00 3.67
2519 3984 1.610522 CTTCTGTTTCTGGTGCCTTGG 59.389 52.381 0.00 0.00 0.00 3.61
2520 3985 1.610522 CCTTCTGTTTCTGGTGCCTTG 59.389 52.381 0.00 0.00 0.00 3.61
2521 3986 1.479389 CCCTTCTGTTTCTGGTGCCTT 60.479 52.381 0.00 0.00 0.00 4.35
2522 3987 0.111253 CCCTTCTGTTTCTGGTGCCT 59.889 55.000 0.00 0.00 0.00 4.75
2523 3988 0.895559 CCCCTTCTGTTTCTGGTGCC 60.896 60.000 0.00 0.00 0.00 5.01
2524 3989 0.895559 CCCCCTTCTGTTTCTGGTGC 60.896 60.000 0.00 0.00 0.00 5.01
2525 3990 0.771127 TCCCCCTTCTGTTTCTGGTG 59.229 55.000 0.00 0.00 0.00 4.17
2526 3991 1.425448 CTTCCCCCTTCTGTTTCTGGT 59.575 52.381 0.00 0.00 0.00 4.00
2527 3992 1.705186 TCTTCCCCCTTCTGTTTCTGG 59.295 52.381 0.00 0.00 0.00 3.86
2528 3993 3.508845 TTCTTCCCCCTTCTGTTTCTG 57.491 47.619 0.00 0.00 0.00 3.02
2529 3994 4.536295 TTTTCTTCCCCCTTCTGTTTCT 57.464 40.909 0.00 0.00 0.00 2.52
2530 3995 5.279506 GGAATTTTCTTCCCCCTTCTGTTTC 60.280 44.000 0.00 0.00 32.48 2.78
2531 3996 4.593206 GGAATTTTCTTCCCCCTTCTGTTT 59.407 41.667 0.00 0.00 32.48 2.83
2532 3997 4.160329 GGAATTTTCTTCCCCCTTCTGTT 58.840 43.478 0.00 0.00 32.48 3.16
2533 3998 3.779444 GGAATTTTCTTCCCCCTTCTGT 58.221 45.455 0.00 0.00 32.48 3.41
2542 4007 1.202348 CGCACTGGGGAATTTTCTTCC 59.798 52.381 0.00 0.00 37.86 3.46
2543 4008 1.202348 CCGCACTGGGGAATTTTCTTC 59.798 52.381 6.25 0.00 37.91 2.87
2544 4009 1.203001 TCCGCACTGGGGAATTTTCTT 60.203 47.619 12.34 0.00 41.69 2.52
2545 4010 0.404040 TCCGCACTGGGGAATTTTCT 59.596 50.000 12.34 0.00 41.69 2.52
2546 4011 2.955609 TCCGCACTGGGGAATTTTC 58.044 52.632 12.34 0.00 41.69 2.29
2571 4036 5.130350 CCTACTGTCTGTTTCAGGGAAAAA 58.870 41.667 0.00 0.00 37.25 1.94
2572 4037 4.445735 CCCTACTGTCTGTTTCAGGGAAAA 60.446 45.833 9.59 0.00 42.20 2.29
2573 4038 3.072476 CCCTACTGTCTGTTTCAGGGAAA 59.928 47.826 9.59 0.00 42.20 3.13
2574 4039 2.637872 CCCTACTGTCTGTTTCAGGGAA 59.362 50.000 9.59 0.00 42.20 3.97
2575 4040 2.158219 TCCCTACTGTCTGTTTCAGGGA 60.158 50.000 12.63 12.63 44.63 4.20
2576 4041 2.028020 GTCCCTACTGTCTGTTTCAGGG 60.028 54.545 9.08 9.08 41.39 4.45
2577 4042 2.028020 GGTCCCTACTGTCTGTTTCAGG 60.028 54.545 0.00 0.00 37.25 3.86
2578 4043 2.028020 GGGTCCCTACTGTCTGTTTCAG 60.028 54.545 0.00 0.00 38.68 3.02
2579 4044 1.975680 GGGTCCCTACTGTCTGTTTCA 59.024 52.381 0.00 0.00 0.00 2.69
2580 4045 2.028020 CAGGGTCCCTACTGTCTGTTTC 60.028 54.545 11.12 0.00 29.64 2.78
2581 4046 1.978580 CAGGGTCCCTACTGTCTGTTT 59.021 52.381 11.12 0.00 29.64 2.83
2582 4047 1.645710 CAGGGTCCCTACTGTCTGTT 58.354 55.000 11.12 0.00 29.64 3.16
2583 4048 0.252284 CCAGGGTCCCTACTGTCTGT 60.252 60.000 11.12 0.00 32.90 3.41
2584 4049 0.252284 ACCAGGGTCCCTACTGTCTG 60.252 60.000 11.12 0.00 32.90 3.51
2585 4050 1.288335 CTACCAGGGTCCCTACTGTCT 59.712 57.143 11.12 0.00 32.90 3.41
2586 4051 1.287146 TCTACCAGGGTCCCTACTGTC 59.713 57.143 11.12 0.00 32.90 3.51
2587 4052 1.006878 GTCTACCAGGGTCCCTACTGT 59.993 57.143 11.12 10.91 32.90 3.55
2588 4053 1.777941 GTCTACCAGGGTCCCTACTG 58.222 60.000 11.12 4.87 29.64 2.74
2589 4054 0.258194 CGTCTACCAGGGTCCCTACT 59.742 60.000 11.12 0.39 29.64 2.57
2590 4055 0.033699 ACGTCTACCAGGGTCCCTAC 60.034 60.000 11.12 3.66 29.64 3.18
2591 4056 1.492176 CTACGTCTACCAGGGTCCCTA 59.508 57.143 11.12 0.00 29.64 3.53
2592 4057 0.258194 CTACGTCTACCAGGGTCCCT 59.742 60.000 3.85 3.85 0.00 4.20
2593 4058 1.390383 GCTACGTCTACCAGGGTCCC 61.390 65.000 0.00 0.00 0.00 4.46
2594 4059 0.682209 TGCTACGTCTACCAGGGTCC 60.682 60.000 0.00 0.00 0.00 4.46
2595 4060 0.455005 GTGCTACGTCTACCAGGGTC 59.545 60.000 0.00 0.00 0.00 4.46
2596 4061 0.251474 TGTGCTACGTCTACCAGGGT 60.251 55.000 0.00 0.00 0.00 4.34
2597 4062 0.892755 TTGTGCTACGTCTACCAGGG 59.107 55.000 0.00 0.00 0.00 4.45
2598 4063 1.731424 CGTTGTGCTACGTCTACCAGG 60.731 57.143 0.00 0.00 36.80 4.45
2599 4064 1.198408 TCGTTGTGCTACGTCTACCAG 59.802 52.381 0.00 0.00 42.01 4.00
2600 4065 1.198408 CTCGTTGTGCTACGTCTACCA 59.802 52.381 0.00 0.00 42.01 3.25
2601 4066 1.892468 CTCGTTGTGCTACGTCTACC 58.108 55.000 0.00 0.00 42.01 3.18
2602 4067 1.135746 AGCTCGTTGTGCTACGTCTAC 60.136 52.381 0.00 0.00 42.01 2.59
2603 4068 1.162698 AGCTCGTTGTGCTACGTCTA 58.837 50.000 0.00 0.00 42.01 2.59
2604 4069 0.314302 AAGCTCGTTGTGCTACGTCT 59.686 50.000 0.00 3.07 42.01 4.18
2605 4070 1.137513 AAAGCTCGTTGTGCTACGTC 58.862 50.000 0.00 1.16 42.01 4.34
2606 4071 2.427232 TAAAGCTCGTTGTGCTACGT 57.573 45.000 0.00 0.00 42.01 3.57
2607 4072 2.029244 CCATAAAGCTCGTTGTGCTACG 59.971 50.000 0.00 0.11 40.22 3.51
2608 4073 3.259064 TCCATAAAGCTCGTTGTGCTAC 58.741 45.455 0.00 0.00 40.22 3.58
2609 4074 3.056107 ACTCCATAAAGCTCGTTGTGCTA 60.056 43.478 0.00 0.00 40.22 3.49
2610 4075 2.289694 ACTCCATAAAGCTCGTTGTGCT 60.290 45.455 0.00 0.00 43.32 4.40
2611 4076 2.076863 ACTCCATAAAGCTCGTTGTGC 58.923 47.619 0.00 0.00 0.00 4.57
2612 4077 3.067106 ACACTCCATAAAGCTCGTTGTG 58.933 45.455 0.00 0.00 0.00 3.33
2613 4078 3.067106 CACACTCCATAAAGCTCGTTGT 58.933 45.455 0.00 0.00 0.00 3.32
2614 4079 3.067106 ACACACTCCATAAAGCTCGTTG 58.933 45.455 0.00 0.00 0.00 4.10
2615 4080 3.244078 TGACACACTCCATAAAGCTCGTT 60.244 43.478 0.00 0.00 0.00 3.85
2616 4081 2.299013 TGACACACTCCATAAAGCTCGT 59.701 45.455 0.00 0.00 0.00 4.18
2617 4082 2.959516 TGACACACTCCATAAAGCTCG 58.040 47.619 0.00 0.00 0.00 5.03
2618 4083 5.419542 TGTATGACACACTCCATAAAGCTC 58.580 41.667 0.00 0.00 30.04 4.09
2619 4084 5.420725 TGTATGACACACTCCATAAAGCT 57.579 39.130 0.00 0.00 30.04 3.74
2620 4085 5.874810 TCTTGTATGACACACTCCATAAAGC 59.125 40.000 0.00 0.00 36.69 3.51
2621 4086 6.035005 CGTCTTGTATGACACACTCCATAAAG 59.965 42.308 0.00 0.00 36.69 1.85
2622 4087 5.867174 CGTCTTGTATGACACACTCCATAAA 59.133 40.000 0.00 0.00 36.69 1.40
2623 4088 5.407502 CGTCTTGTATGACACACTCCATAA 58.592 41.667 0.00 0.00 36.69 1.90
2624 4089 4.676986 GCGTCTTGTATGACACACTCCATA 60.677 45.833 0.00 0.00 36.69 2.74
2625 4090 3.849911 CGTCTTGTATGACACACTCCAT 58.150 45.455 0.00 0.00 36.69 3.41
2626 4091 2.609491 GCGTCTTGTATGACACACTCCA 60.609 50.000 0.00 0.00 36.69 3.86
2627 4092 1.993370 GCGTCTTGTATGACACACTCC 59.007 52.381 0.00 0.00 36.69 3.85
2628 4093 2.663602 CTGCGTCTTGTATGACACACTC 59.336 50.000 0.00 0.00 36.69 3.51
2629 4094 2.610479 CCTGCGTCTTGTATGACACACT 60.610 50.000 0.00 0.00 36.69 3.55
2630 4095 1.726791 CCTGCGTCTTGTATGACACAC 59.273 52.381 0.00 0.00 36.69 3.82
2631 4096 1.337728 CCCTGCGTCTTGTATGACACA 60.338 52.381 0.00 0.00 36.82 3.72
2632 4097 1.359848 CCCTGCGTCTTGTATGACAC 58.640 55.000 0.00 0.00 36.82 3.67
2633 4098 0.391130 GCCCTGCGTCTTGTATGACA 60.391 55.000 0.00 0.00 36.82 3.58
2634 4099 2.384203 GCCCTGCGTCTTGTATGAC 58.616 57.895 0.00 0.00 0.00 3.06
2635 4100 4.932789 GCCCTGCGTCTTGTATGA 57.067 55.556 0.00 0.00 0.00 2.15
2649 4114 3.482232 ATAGCTGGTGCATCCGCCC 62.482 63.158 10.01 0.00 41.05 6.13
2650 4115 2.111878 ATAGCTGGTGCATCCGCC 59.888 61.111 10.01 0.00 42.74 6.13
2651 4116 2.901292 GCATAGCTGGTGCATCCGC 61.901 63.158 17.82 5.05 42.08 5.54
2652 4117 1.524393 TGCATAGCTGGTGCATCCG 60.524 57.895 20.52 0.00 46.76 4.18
2653 4118 4.565360 TGCATAGCTGGTGCATCC 57.435 55.556 20.52 0.00 46.76 3.51
2657 4122 3.880846 GGCGTGCATAGCTGGTGC 61.881 66.667 16.39 16.39 42.81 5.01
2658 4123 2.436469 TGGCGTGCATAGCTGGTG 60.436 61.111 15.16 0.00 34.52 4.17
2659 4124 2.436646 GTGGCGTGCATAGCTGGT 60.437 61.111 15.16 0.00 34.52 4.00
2660 4125 3.566853 CGTGGCGTGCATAGCTGG 61.567 66.667 15.16 0.00 34.52 4.85
2661 4126 4.228097 GCGTGGCGTGCATAGCTG 62.228 66.667 15.16 8.11 34.52 4.24
2664 4129 1.157257 TTATGGCGTGGCGTGCATAG 61.157 55.000 0.00 0.00 0.00 2.23
2665 4130 0.533978 ATTATGGCGTGGCGTGCATA 60.534 50.000 0.00 0.00 0.00 3.14
2666 4131 1.823470 ATTATGGCGTGGCGTGCAT 60.823 52.632 0.00 0.00 0.00 3.96
2667 4132 2.437537 ATTATGGCGTGGCGTGCA 60.438 55.556 3.15 0.00 0.00 4.57
2668 4133 1.987704 TTCATTATGGCGTGGCGTGC 61.988 55.000 0.00 0.00 0.00 5.34
2669 4134 0.027979 CTTCATTATGGCGTGGCGTG 59.972 55.000 0.00 0.00 0.00 5.34
2670 4135 0.107897 TCTTCATTATGGCGTGGCGT 60.108 50.000 0.00 0.00 0.00 5.68
2671 4136 1.195448 GATCTTCATTATGGCGTGGCG 59.805 52.381 0.00 0.00 0.00 5.69
2672 4137 2.221169 TGATCTTCATTATGGCGTGGC 58.779 47.619 0.00 0.00 0.00 5.01
2673 4138 5.702670 ACTAATGATCTTCATTATGGCGTGG 59.297 40.000 9.67 1.40 45.21 4.94
2674 4139 6.791887 ACTAATGATCTTCATTATGGCGTG 57.208 37.500 9.67 1.96 45.21 5.34
2675 4140 7.387948 GGTTACTAATGATCTTCATTATGGCGT 59.612 37.037 9.67 7.42 45.21 5.68
2676 4141 7.411912 CGGTTACTAATGATCTTCATTATGGCG 60.412 40.741 9.67 2.81 45.21 5.69
2677 4142 7.387948 ACGGTTACTAATGATCTTCATTATGGC 59.612 37.037 9.67 3.13 45.21 4.40
2678 4143 8.833231 ACGGTTACTAATGATCTTCATTATGG 57.167 34.615 9.67 3.65 45.21 2.74
2683 4148 9.352191 ACTAGTACGGTTACTAATGATCTTCAT 57.648 33.333 0.00 0.00 39.78 2.57
2684 4149 8.743085 ACTAGTACGGTTACTAATGATCTTCA 57.257 34.615 0.00 0.00 39.78 3.02
2686 4151 9.844257 AGTACTAGTACGGTTACTAATGATCTT 57.156 33.333 23.87 1.22 39.78 2.40
2695 4160 9.289782 CCCATAATTAGTACTAGTACGGTTACT 57.710 37.037 23.87 12.25 41.69 2.24
2696 4161 8.515414 CCCCATAATTAGTACTAGTACGGTTAC 58.485 40.741 23.87 5.32 40.80 2.50
2697 4162 8.444783 TCCCCATAATTAGTACTAGTACGGTTA 58.555 37.037 23.87 21.65 40.80 2.85
2698 4163 7.297614 TCCCCATAATTAGTACTAGTACGGTT 58.702 38.462 23.87 20.53 40.80 4.44
2699 4164 6.852404 TCCCCATAATTAGTACTAGTACGGT 58.148 40.000 23.87 12.60 40.80 4.83
2700 4165 7.231317 TGTTCCCCATAATTAGTACTAGTACGG 59.769 40.741 23.87 17.31 40.80 4.02
2701 4166 8.078596 GTGTTCCCCATAATTAGTACTAGTACG 58.921 40.741 23.87 10.30 40.80 3.67
2702 4167 8.078596 CGTGTTCCCCATAATTAGTACTAGTAC 58.921 40.741 23.03 23.03 36.35 2.73
2703 4168 7.998383 TCGTGTTCCCCATAATTAGTACTAGTA 59.002 37.037 2.23 0.00 0.00 1.82
2704 4169 6.835488 TCGTGTTCCCCATAATTAGTACTAGT 59.165 38.462 0.00 0.00 0.00 2.57
2705 4170 7.014038 AGTCGTGTTCCCCATAATTAGTACTAG 59.986 40.741 2.23 0.00 0.00 2.57
2706 4171 6.835488 AGTCGTGTTCCCCATAATTAGTACTA 59.165 38.462 0.00 0.00 0.00 1.82
2707 4172 5.659971 AGTCGTGTTCCCCATAATTAGTACT 59.340 40.000 0.00 0.00 0.00 2.73
2708 4173 5.910614 AGTCGTGTTCCCCATAATTAGTAC 58.089 41.667 0.00 0.00 0.00 2.73
2709 4174 5.221106 CGAGTCGTGTTCCCCATAATTAGTA 60.221 44.000 3.82 0.00 0.00 1.82
2710 4175 4.441079 CGAGTCGTGTTCCCCATAATTAGT 60.441 45.833 3.82 0.00 0.00 2.24
2711 4176 4.049186 CGAGTCGTGTTCCCCATAATTAG 58.951 47.826 3.82 0.00 0.00 1.73
2712 4177 4.049546 CGAGTCGTGTTCCCCATAATTA 57.950 45.455 3.82 0.00 0.00 1.40
2713 4178 2.901249 CGAGTCGTGTTCCCCATAATT 58.099 47.619 3.82 0.00 0.00 1.40
2714 4179 2.596904 CGAGTCGTGTTCCCCATAAT 57.403 50.000 3.82 0.00 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.