>input_sequence_70335
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-------------------------------------------ATGGAGCGGCGGAGGGCTGCGTGGGCCGCGGTGCTGG
TGGCGGTGGCCGCGTGCGCGGCGCTGCCGGCGACGACGACGGCGAACAAGATCAAGGTCAACTGGTTGCCCAACACCAAC
TACTCCGGCTGGGAGCAGGAGCACGGCCCCTTCTACAAGGGCGACTGGCTCGGTACGTGCGCGCGCGGTTACTTCACTTT
ACTCTTTACGCCTAGCTTCGAGCTCGAGCTCGAGCCCAGCCGCCGCCAGCAGATCTGGTCGCCGGAGCGCGGCCGCGGAA
GGAGATGCGAAGCCGCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCCGCCGTAA---TACTCTACCTCCGGCCGGCCGG
CCGGCTGGCTGACTGACT------------CGGTTCGTCTGGTGTTGCGCTCATGCATTGCAGTGTTCTACTACACGGCG
GGGCAGGCGGACGTGGTGGAGGTGAACGAGTCCGGGTACAACCGGTGCGACGCCAGCAACGCCATCTACAACTACAGCAA
GGGCCGCAGCTTCGCCTTCGAGCTCAACGAGACCAAGACCTACTACTTCATCTGCAGCTTCGGCTACTGCCCCGGCGGGA
TGCGGCTGGCCATCAAGTCCCAGAAGCTGCCGCCGCCGTCGCCGCCGCCCTCCGCGCAGCACCACCGCTCCGCCGCGCTC
GCCGGGCCGCGCGCCGGGGTCGCCCTCTACGCCGCCGTCGCCGTCCTCGCCGCGCTGCTCAGGGCGGTCTAG--------
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>chr5B_1_TraesCS5B01G400400
GAGTTCTTTTGGATTTTGTTACTATTTGAAATTACTTGATTTTGGCTAGTCAAAAGACGTACTATTATAATCTGTCAACA
CGTGGTTGGATAGTTAGGAAAACAGTGGCATTTTCAGCCCATCAAGGTTCAAGTCTTAGATTTGACACTGGTCCTCGCAT
TTTTCTG-AATTTATTTTAGGCCTTTCGGTGTTGTGCGTTCAGTGGGAGAAGATCTTTCTATCGACTACGAAGACGTCTG
TAACGACTTCGTAAATCTCAGAAATGATGTCCCCGCTCAGTCTTTCGGAGGTGCTCATATCTTTCAGAGGTGCTCATAGA
TGTACGGTGTGTGTACGTGCGTTCACATGGATGAGCTTATGTATGAGCGTTTGCATCTATGATGTATATAATGTGTTTCA
TCTATGATGTATATAATGTGTTAAAGAAAATCTGCAAATTGAACCGACTTTCGAAATACGCTGGGATGGCTGCCATGCCT
ATCAAGCGTCCAGGCCACTCCTCCAATGG----CTACCCTACCACTACCATGCGCAGGCTCTGTGTTGCGATGTTGCAAA
TCGACGCCGGCGGCCACACGCTCCCGCCCCAAAGTCAGTCACCCACAGCCGAACGCGCCAC---GGTAGATCTAGATCCC
ACGGGCACACGGCCCCTC-AACCACG----CGCGCGCACCGGCCCGGCGACCGTGGCCCGAGACCGCGCCGCACCGTGCG
CAGGCACCACCCGACCGCACGGCCGCGACCCACCGCCCCAGGATCCGGGAACGGACGGCCACGATGGCGTCTCCCCGGCA
CACCGCCTGGCGCCTCCAGAGTTCCAGACTCCTGCCTG----GACC----------------------------------
--------------------------------------------------------------------------------
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--------------CCGCTCCCACGTGCCGCCTCTCCTCTTTTTAAGACCTTGGCCAGGCCGGCCACCGTCCCATCCCA-
------CCACC---TTCCTCCTCTGCCCCCGCCCAGCTCGTTCCATTTTGAAGAAGCAAGAAACAGCCGCGC--ACATCT
CGTCGCCCCTGGTTCCTCGTCGGACGAGGAAGAGGC------GATGGAGCGGCGGAGGGCTGCGTGGGCCGCGGTGCTGG
TGGCGGTGGCCGCGTGCGCGGCGCTGCCGGCGACGACGACGGCGAACAAGATCAAGGTCAACTGGTTGCCCAACACCAAC
TACTCCGGCTGGGAGCAGGAGCACGGCCCCTTCTACAAGGGCGACTGGCTCGGTACGTGCGCGCGCGGTTACTTCACTTT
ACTCTTTACGCCTAGCTTCGAGCTCGAGCTCGAGCCCAGCCGCCGCCAGCAGATCTGGTCGCCGGAGCGCGGCCGCGGAA
GGAGATGCGAAGCCGCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCCGCCGTAA---TACTCTACCTCCGGCCGGCCGG
CCGGCTGGCTGACTGACT------------CGGTTCGTCTGGTGTTGCGCTCATGCATTGCAGTGTTCTACTACACGGCG
GGGCAGGCGGACGTGGTGGAGGTGAACGAGTCCGGGTACAACCGGTGCGACGCCAGCAACGCCATCTACAACTACAGCAA
GGGCCGCAGCTTCGCCTTCGAGCTCAACGAGACCAAGACCTACTACTTCATCTGCAGCTTCGGCTACTGCCCCGGCGGGA
TGCGGCTGGCCATCAAGTCCCAGAAGCTGCCGCCGCCGTCGCCGCCGCCCTCCGCGCAGCACCACCGCTCCGCCGCGCTC
GCCGGGCCGCGCGCCGGGGTCGCCCTCTACGCCGCCGTCGCCGTCCTCGCCGCGCTGCTCAGGGCGGTCTAGTCTAGCCG
ATCTGATCTGGTGCTAGTTCCGAGCTCGTTTGTTGTTTGGAGTTTCC------TTCCCCATTTCTTCATTTCTTTGGTGT
GTGTTCCTAGGATAGGA----GAGAATGGCAGTGCCACGGACG----TTCTTGGGTGAG-ATTAGCGGTGTGGATTTGCG
GGACCAAATGGTTACCGGCGGATTGATTTGTCAAGTGTGAAGAGTGCACTGGACTGGAGAAATAGCGTACTATTTTTTTG
GTTTT-----TTTAACTTTGCGTTCATCAGTTGCTCTGTGAAGAAGTAGTGTACTATTTTTTGGTTTTT-----------
-----------------------------------------------------------TTTTGGTGTGGTTTCGGCACG
GCGGGGTGGCTAGTCAAAAGACGTACTATTAT------------------------------------------------
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-----------------------------AATATGTGACTGATTATTATGTGATGGTTAGGATTTAGCTGCTACTGGGAC
CTAGTGCAGTAGTCCTATCATGCGCTAACTGCTCGTCTTAAATAAGAAGTTCCCCA------------------------
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--------------------------------------------------CAGAGATCGGCCAGTGACCGGCCTGAGGAC
GGGGACGTACCTGGCCGGCAGAAGCCAAGGCAGGA--TGCGGCACGGCGCGAACCAGCCAAGCTAGCAGCAGGAGATCAC
ATGCGTCCGCGTTGGAT---ACCACATGGCCCCGGTTTCAATGCGGATCGCAGGGGACAGAGGATCCACCGGTTCCACAT
TTGTTTTCATCGCGACCCGTGCTTTCCCCGTCTTCATTTGTGGGCTGGGCAATGGAGCATGGCGGAGCGTCTACGACACG
GACTTGCGTTGCTCATTAACTCCTTCCTAAGTTCCTATGGTCCTATCTGGGAACGTGAACAAACCAAGGCACCAGAAACA
GAAGGGGGAAGAAAATTCCCCAGTGCGGAAGCATTTTTTTCCCTGAAACAGACAGTAGGGACCCTGGTAGACGTAGCACA
ACGAGCTTTATGGAGTGTGTCATACAAGACGCAGGGCGGATGCACCAGCTATGCACGCCACGCCATAATGAAGATCATTA
GTAACCGTACTAGTACTAATTATGGGGAACACGACTCG
>chr5D_1
GAGTTCTTTTGGATTCTGTTACTACTTGAAGTTACTTGATTTTGGCTAGTCAAAACACGTA---TTATAGTATGTCAACA
TGTGGTTGGATGGT-AGGAGAACAGTGGCCTTCTTAGCCCATCAAGGTTCAAGTC---GAGTTGACACTGGTGTTCGCAT
TTTTTTTTAATTTATTTCAGCCCTTCCGGTGATGTGTGTTCATTGG----AGATCTTTCTGTCGACTACGAAGATGTATG
TGATGACTTCATCAGTCTCA-AAATAATGTCCCCGCTCAGTCTTTCAGAGGTGCTCG-------------------TAGA
TGTACGGTGTGCGTACGGGCGTTCACAAGGATGAGTTTATGTATGAGCGTCTGCATCTATGATGTATATAATGTGTTAA-
----------------------AAAGAAAACCTGCAAATCGAATCGACTTTCGAAATACGCTGGGACGGCTGCCATGCCC
ATCAAGCGTCCAGACCACTCCTCCAATGG----CTACCCTACCA------TGCGCAGGCTCCGTGTCGCGATGTTGCAAA
TCGACGCCGGCGGCCACACGCTCCCGCCCCAAAGTCAGTCA-CCACAGGCGAACGCGCCACGGTGGTAGATCTAGATCCC
ACGGGCGCACGGCCCCTC-AACCACGGACGCGCACGCACCGGCCCGGCGACCGTGGCCCGAGACCGCGCCGCGCCGTGCG
CAGGCACCACCCGACCGCACGGCCGCGACCCACCACCCCAGGATCCGCGAACGGACGGCCACGATGGCGTCTCCCGGGCA
CAC-------CGCCTCCAGAGTTCCAGACTCCTTCCTGCCTGGACC----------------------------------
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--------------CCGCTCCCACGTGCCCCCTCTCCTCTTTTTAAGACCGCGGTCAGGCCGGCCACCGTCCCATCCCA-
------CCACCACCTTCCTCCTCTGCCCCCGCCCAGCTCGTTCCATTTTGAAGAAGCAAGAAACAGCAGCGCGCACATCT
CGCTGCTCGA-------CGTCGTCGGAGGAAGAGGCGAGGGTGATGGAGCGGCGGAGGGCTGCATGGGCCGCGGTGCTGG
TGGCGGTGGCCGCGTGCGCGGCGCTGCCGGCGAAGACGACGGCGAACAAGATCAAAGTCAACTGGTTGCCCAACACCAAC
TACTCCGGCTGGGAGCAGGAGCACGGGCCCTTCTACAAGGGCGACTGGCTCGGTACGCACGCGCGCGGTTACTTTT----
-CTTTATACGC----CTTCGAGCTCGAGCGCGAGCCCACCCGCCGCCAGCAGATCTGGTCGCCGGAGCGCGGCCGCGGAA
GGAGATGCGAGGC-------CTTTCTTTCTTTCTTTCTCG--------GCCCAAA---TACTCTAATCT-------CCGG
CCGGCTGGCTGGCTGACT------------CGGGGCGTCTTGTGCGTG----------TGCAGTGTTCTACTACACGGCG
GGGCAGGCGGACGTGGTGGAGGTGAACGAGTCCGGGTACAACCGGTGCGACGCCAGCAACGCCATCTACAACTACAGCAA
GGGCCGCAGCTTCGCCTTCGAGCTCAACGAGACCAAGACCTACTACTTCATCTGCAGCTTCGGCTACTGCCCCGGCGGGA
TGCGCCTGGCCATCAAGTCCCAGAAGCTGCCGCCGCCGTCGCCGCCGCCCTCCGCGCAGCACCACCGCTCCGCCGCGCTC
GCCGGCCCGCGCGCCGGGGTCGCCCTCTACGCCGCCGTCGCCGTCCTCGCCGCGCTCCTCAGGGCGGTCTAGCCTAGCCG
ATCTGGTCTGGT-----TTCCGAGTTCGTTTGTTTGATGGATTGTTTGG-AGTTTCCCCATTTCTTCATTTCTTTGGTGT
GTGTTCCTAATCCTAGGCTAGGAGAGTGGTAGTGCCACGGGCA----TTCTTGGTTGAC---TAGCGGTGTGGATTTGCG
GAACCAAATGGTTACCGGCGGATTGATTTATCAAGTGTGAAGAGTGCACTGGACTGGAGAGAAAGAAACTGTTTCTACGC
TACTGATTAGTTTAAATCTATGTTCATTGGTTGCGCTGTGGAGAAGTATACTACTTCCTCGGTAAAGAAATATAAGAGCA
TTTGGAGTAGTGATCTAAATGCTCCTACGTTTCTACATTTCTTTATTGAGGGAGTAGTATTTTTGTATGGTTTCGGCACG
GCTGGGCGGCTGGCCCGTACCACCAGCCGGAATTTGCGCGCGTAAACAAAATTGCGGATGCCGTGCAGAAAACG--CGTC
GAGTGCCGAAATTTCAACAC------------------------------------------------------------
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-------------------------------------------------------------------------TGAACGA
CCGAACCAGCGCTGGTATGTGGATGCGGCAGTAGGTGGCTGATTATCCGAGGGT--TTAGGATTGAGCTGCTACTGGGGC
CTAGTCCAGTAGTCCTATCATGCGCTAACTGCCCGTCTTAAATAAGAAGCTCCCCA------------------------
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--------------------------------------------------CAGAGATCGGCCGGTGACCGGCCTGAGGAC
GG------ACCTGGCCGGCAGAAGCCAAGGCAGGAGGTGCGGCACTGCGCGAACCAGCCAAGCTAGCGGCAGGAGATCAC
ATGCGTTCGCGTTGGAT---ACCACATGG-ACCGGTTTCAATGCGGATCGCAGGGGACAGAGGATCCACCAGCTCCACAT
TTGTTTACATCGCGACCCGTGCTTT-GCCGTCTTCATTTGTGGGCAGGGCAATGGAGCATGGCGGAGCGTCTACGACACG
GACTTGCGTTGCTCATCAACTCCTTCCTATGCTCCTAT------------------------------------------
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>chr5A_406
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------ATGTATACAATGTGTTGAAGAAAATCAGCAAATCGAATCGACTTTCGAAATACGCTGGGATGGCCGCCATGCCT
ATCAAGCGTCCAGACCACTCCACCAGTGGCTACCTACCCTACCA------TGCGCAGGCTCTGTGTTGCGATGTTGCAGA
CCGACGCCGGCGGCCACACGCTCCCGCCCCAAAGTCAGTCA-CCACAGGCGAACGCACCAC---GGTAGATCTAGATCCC
ACGGGCGCACGGCCCCTCCAACCACGGATGCGCGCGCACCGGCCCGGCGACCGTGCGCCGAGACCGCGCCGCGCCGTGCG
CAGGCACCACCCGACCGCACGGCGGCGACCCACCACCGCAGGATCCGCGAACGGGCGGCCACGATGGCGTCTCCCCGGCA
CAC-------CGCCTCCAGAGTTCCAGACTCCTGCCTG----GACCCCGCTCCCACGGGAAAAAAATTCTATGAGACCAG
GTCTCACGGATTAGCAGGTGAGACCCATCCTAATGGATGACACATGACATTCACAAATCACAAAGCATCCACTCCACCCC
TCACCTGAAACCAGGGGAGGAGAGATTAGATGCTTTGTGATTTGTGAATGCCACATGTCATTTATCAGGACGGGTCTCAC
CTGATTTATATGATCCGCTCCCACGTGCCCCCTCTCCTCTTTTTAAGACCGCGGTCAGGCCGGCCACCGTCCCATCCCAT
CCCATCCCACCACCTTCCTCCTCTGCCCCCGCCCAGCGCGTTCCATTTT---GAAGCAGGAAACAGCAGCGCGCACATCT
CACTGTCCCTGGTTCGTCGTCCGACGAGGAAGAGGCGAGGGTGATGGAGCGGCGGAGGGCTGCGTGGGCCGCGGTGCTGG
TGGCGGTGGCCGCGTGCGCGGCGCTGCCGGCGACGACGACGGCGAACAAGATCAAAGTCAACTGGCTGCCCAACACCAAC
TACTCCGGCTGGGAGCAGGAGCACGGGCCCTTCTACAAGGGCGACTGGCTCGGTACGT----------------------
ACTCTTTACGC----CTTGGAGCTCGAGCTGTAGCCCAGCCGCCGCCAGCAGATCTGGTCGCCGGAGCGCGGCCGCGGAA
GGAAATGCGAGGC-------CTTTCTTTCTTTCTTTCTTTCTTTCTCCGCCGCCGTATTACTCTAATCT-------CCGG
CCGGCCGGCTGGCTGACTGACTGACTGACTCGGGGCGTCTTGTGCACA----------TGCAGTGTTCTACTACACGGCG
GGGCAGGCGGACGTGGTGGAGGTGAACGAGTCCGGGTACAACCGGTGCGACGCCAGCAACGCCATCTACAACTACAGCAA
GGGCCGCAGCTTCGCCTTCGAGCTCAACGAGACCAAGACCTACTACTTCATCTGCAGCTTCGGCTACTGCCCCGGCGGGA
TGCGGCTGGCCATCAAGTCCCAGAACCTGCCGCCGCCGTCGCCGCCGCCCTCCGCGCAGCACCACCGCTCCGCCGCGCTC
GCCGGGCCGCGCGCCGGGGTCGCCCTCTACGCCGCCGTCGCCGTCCTCGCCGCGCTCCTCAGGGCGGTCTAGTGTAGCCG
GTCTGGC-----GCTGGTTCTGAGCTCGTTTGTTTGATGGATTGGCTCGAAGTTTCCCCATTTCTTCATTTCTTTGGTGC
GTGTGTG-----CTAGGATAGCAGAGTGGTAGTGCCACGGGCGGGCGTTCTTGGTTGATTATTAGCGGTGTGGATTTGCG
GAACCAAATGGTTACCGGCGCTTTGATTTATCAAGTGTGAGGAGTGCACTGGACTGGAGAGG-AGAAACTGTTTCTATGC
TAATGATGATTTGTT---------------TTGCTCTGTGGAGAAGTAGTACTCTCTTTTTCGGGGTGCTATCA------
------------------------------------------------------------------GTGACTTCGGCACG
GCTGGGCGGCTGGCCCGTACCACCAGCTGGAATTTGCGCGCGTAAACAAAATTGCACATGCCGTGCAGAAAACGCTCGAC
GAGTGCCGAGATTTCAACATTGAGAGCATCTCCGGCCGTTGGTCTCTCAGGAGGCGCAAAAAAACGCTTCATGAGGCGAG
CCGGCGCAAAACGCACGCTGGGGTATAATGTCACTTAGTTGCGGCGCCCACGGATTTTGTGAAAGTTAAAGTGCAGCATA
AATATGACACAAATTCAATCATTTTCAGCGAGTTCATACATATTTCGGCAAGTTCAAACCAAATTCAACCAAACACGGCG
ACAGTTCATACATATTTAAAACATTTTACAAAAAAGAAAAAACACACTACTAGGCCTGTCGTCTCCCTCGCCTCGCCGCT
CGTCGCCATTCTACATGCCGAAGAGGCTGTAGAACCGCGTGTAGCCGCAGTCGTCGTCGCCCCCGCTGCGGCCGCTGTCT
CTGCTGCAACCCTCCCCCGGTTGGCGCGGCGGGTTGGACGGTCCGGGAGCGTCCTCGTCGTCGTCGCTGTCGAGGATCAC
GACGCATGGCTGCCTCGTCTACGCGTGGCATGCGCGGGGACGCGCGTCGTCACGCCGTCCGTGAGGCATCAATAGCGGAG
GCTGACCGGCGGGGCAGCGCGCGACAGCTTTGGCATTGATTCGCCGCGGGAAACGAGGCGATGAGGACGACGAAGCGGCG
AGAAGCGAGACGAGTCGCTGGCAAGGAGGGCCCGCGACTCTTTCATGCCAAAAACGATTCGCCCAGCGCAACCGAGCGCC
CCCAGCGCGCCGGGTTCGGGTTGGGTCCGCCTGCGCCATTTTCAGTCCAAGCCGGCGAAAATTAAACCCTTGAGACGCGA
CTGGGTCGATTTTTTTACACCAACAACCGAAAACTTGCCTGGGGCCTTGTTGAGGGCGTGAATGGACATGCTTTGAATGA
CCGAACCAGCGTTGGTATGCGAATGCGGAAATAGGTGGCTGATTATCTGACGGT--TAGG--------------------
-------------------ATACGCTATCTGCTCGTCTTAAATACTTCTTCCGTCTGAAAATACTTATCATTAAAATGAA
TAAAAGATAATGTATTTAGATGTCATCAAAATAAATAAAAAATATATCTAGATATATATTAATTTTAAATATATTTCTTT
TTATCTATTTTAATGATAAATATTTTCGGACGGAGGAAATAGAAGCTGTCCACAGATCGGCCAGTGACCGGCTTGAGGAC
CT------GACTGGCCGGCAAAAGCCAGGGCAGGAGCGGCGGCACGGTGCGAACCAGCCAAGCTAGCGGTAGGAGATCAC
ATGCGTCCGCGTTGGATACCACCACATGG-CCCGGTTTCAATGCGGATCGCAGGG-ACAGAGGATCCACTAGTTCCACAT
TTGTTTACGTCGCGACCCGTGCTTT-CCCGTCTTCATTTGTGGGCAGGGCAATGGAGCATGGCGGAGCGTCTACGACACG
GACTTGCGTTGCTCGTTAA-------------------------------------------------------------
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>SNPs
---------------S--------S-----S------------------------S-----SSS-----S-S--------
S----------S--S----S---------S--S-S--------------------SSS--S-----------SS------
----S-S----------S--S----S-----S----S-----S---SSSS----------S-------------S--S--
-S-S------S-S-S-----S----S--------------------S---------SSSSSSSSSSSSSSSSSSSS----
-----------S-----S---------S-------S--------------S--------------------------SSS
SSSSSS-------S-------------------------S---S------------------------------------
-------------S------------------------------SSSSSS------------------------------
-----------------------------------------S------S-------------------------------
------S-----------------------------------------------------------------S-------
----------------------------------S------------S--------------------------------
---SSSSSSS----------------------------------------------------------------------
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-----------------------------S--------------------SS--S-------------------------
-------------------------------------------------------------------S------------
--SS-----------S----------------------------------------------------------------
-------------------------------------------------------S------------------------
--------------------------S-------------------------------S---------------SSSSSS
-----------SSSS-----------------------------------------------------------------
----------S--SSSSSSS--------------------------------S------------SSSSSSSSSSS----
-----------S---------------------SS-----S---SSSSSSSSSSSSSS----------------------
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--------------------------------------------------------S-----------------------
-----S---------S------------------SSS----S-S--S---------------------------------
---------SSSSSS-S--------S---S----------S-------------S---S---------------------
-S---------------------------S------------------------------S-S--SSSSSSS--S-S-SS
SSS-S----------S-S-SS------SS-----------S---------S----S-----S--SS-SS-----------
---------------------------------------------------------------S----------------
--S---S----S-S-SSS-SSSSS-SSSSS-S------------------------------------------------
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---------------------------------S---S--------SSSSS-S-SS--------S-------------S-
-----S--------------------------------------------------------------------------
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--SSSSSS-----------------------------------------------------------S------------
-----------------------------S----------------------------------------S---------
------S------------------S-------------------S----------------------------------
-----------------------------S-S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_356
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----------------GTGCGTTCACATGGATGAGC--------------------------------------------
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>reverse_1648
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-----------------------------------------------CGCTCATGCATTGCAGTGTT-------------
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>forward_1646
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--------------------------GACTCGGTTCGTCTGGTGTT----------------------------------
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>reverse_4134
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-----------------------------------------------------CACGCCACGCCATAATGAAG-------
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