Multiple sequence alignment - TraesCS5B01G398700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G398700 chr5B 100.000 2492 0 0 1 2492 576220459 576222950 0.000000e+00 4602.0
1 TraesCS5B01G398700 chr5B 86.897 580 49 12 901 1458 576213362 576213936 2.100000e-175 625.0
2 TraesCS5B01G398700 chr5B 95.582 249 9 2 1699 1945 296167358 296167606 4.990000e-107 398.0
3 TraesCS5B01G398700 chr5B 92.075 265 17 4 1448 1709 528372237 528371974 1.090000e-98 370.0
4 TraesCS5B01G398700 chr5B 82.009 428 70 6 1001 1426 576242874 576243296 8.480000e-95 357.0
5 TraesCS5B01G398700 chr5B 100.000 33 0 0 1944 1976 514278412 514278444 7.440000e-06 62.1
6 TraesCS5B01G398700 chr3B 94.385 748 37 2 1 748 819311750 819311008 0.000000e+00 1144.0
7 TraesCS5B01G398700 chr3B 96.653 239 7 1 1708 1945 744785435 744785673 1.800000e-106 396.0
8 TraesCS5B01G398700 chr3B 80.806 521 85 14 1460 1971 709126494 709125980 6.460000e-106 394.0
9 TraesCS5B01G398700 chr3B 94.444 36 2 0 713 748 150934716 150934681 3.460000e-04 56.5
10 TraesCS5B01G398700 chr5D 92.393 723 48 5 739 1458 469241628 469242346 0.000000e+00 1024.0
11 TraesCS5B01G398700 chr5D 88.419 544 41 9 936 1458 469235328 469235870 9.720000e-179 636.0
12 TraesCS5B01G398700 chr5D 83.178 428 65 6 1001 1426 469269540 469269962 3.890000e-103 385.0
13 TraesCS5B01G398700 chr5D 87.912 91 10 1 1963 2053 469242341 469242430 3.390000e-19 106.0
14 TraesCS5B01G398700 chr5D 94.231 52 3 0 2370 2421 497851552 497851603 2.050000e-11 80.5
15 TraesCS5B01G398700 chr5D 100.000 39 0 0 1933 1971 67293923 67293961 3.440000e-09 73.1
16 TraesCS5B01G398700 chr5A 90.820 512 38 7 954 1458 589315564 589316073 0.000000e+00 676.0
17 TraesCS5B01G398700 chr5A 93.725 255 15 1 1456 1709 523569713 523569459 5.030000e-102 381.0
18 TraesCS5B01G398700 chr5A 82.944 428 63 7 1001 1426 589366368 589366787 6.510000e-101 377.0
19 TraesCS5B01G398700 chr5A 93.359 256 16 1 1455 1709 699772273 699772018 6.510000e-101 377.0
20 TraesCS5B01G398700 chr5A 83.173 416 63 5 1001 1414 589334674 589335084 8.420000e-100 374.0
21 TraesCS5B01G398700 chr5A 92.395 263 16 4 1450 1709 696474966 696475227 3.030000e-99 372.0
22 TraesCS5B01G398700 chr2D 79.578 759 110 26 1 747 6968346 6969071 3.700000e-138 501.0
23 TraesCS5B01G398700 chr4D 78.411 755 113 26 1 746 214999685 215000398 1.760000e-121 446.0
24 TraesCS5B01G398700 chr4D 93.182 44 2 1 1928 1971 482049015 482049057 2.070000e-06 63.9
25 TraesCS5B01G398700 chr4D 96.875 32 1 0 1944 1975 101633542 101633573 1.000000e-03 54.7
26 TraesCS5B01G398700 chr4D 100.000 29 0 0 1944 1972 461307884 461307912 1.000000e-03 54.7
27 TraesCS5B01G398700 chr6B 97.071 239 6 1 1708 1945 206666635 206666873 3.860000e-108 401.0
28 TraesCS5B01G398700 chr6B 93.676 253 15 1 1458 1709 567540533 567540785 6.510000e-101 377.0
29 TraesCS5B01G398700 chr6B 84.507 142 17 3 1 138 562546515 562546655 4.320000e-28 135.0
30 TraesCS5B01G398700 chr7B 96.653 239 7 1 1708 1945 127339193 127338955 1.800000e-106 396.0
31 TraesCS5B01G398700 chr7B 96.653 239 7 1 1708 1945 563089524 563089762 1.800000e-106 396.0
32 TraesCS5B01G398700 chr7B 92.058 277 19 3 1695 1969 656189664 656189389 1.080000e-103 387.0
33 TraesCS5B01G398700 chr7B 82.637 311 51 3 995 1304 120792101 120791793 3.160000e-69 272.0
34 TraesCS5B01G398700 chr4B 96.653 239 7 1 1708 1945 359759484 359759722 1.800000e-106 396.0
35 TraesCS5B01G398700 chr4B 95.565 248 8 3 1701 1945 19892571 19892324 6.460000e-106 394.0
36 TraesCS5B01G398700 chr4B 93.676 253 15 1 1458 1709 534409913 534409661 6.510000e-101 377.0
37 TraesCS5B01G398700 chr4B 100.000 30 0 0 1944 1973 428180431 428180460 3.460000e-04 56.5
38 TraesCS5B01G398700 chr4B 94.286 35 1 1 1944 1978 572559356 572559323 4.000000e-03 52.8
39 TraesCS5B01G398700 chr4A 92.803 264 17 2 1448 1709 572648983 572648720 5.030000e-102 381.0
40 TraesCS5B01G398700 chr4A 97.143 35 1 0 1944 1978 452592759 452592725 2.680000e-05 60.2
41 TraesCS5B01G398700 chr1B 93.725 255 15 1 1456 1709 91870187 91869933 5.030000e-102 381.0
42 TraesCS5B01G398700 chr3A 93.676 253 15 1 1458 1709 82480012 82479760 6.510000e-101 377.0
43 TraesCS5B01G398700 chr7D 79.237 472 66 15 995 1458 160015643 160015196 1.450000e-77 300.0
44 TraesCS5B01G398700 chr7D 95.238 42 2 0 1932 1973 636760648 636760689 1.600000e-07 67.6
45 TraesCS5B01G398700 chr7D 100.000 32 0 0 1941 1972 114375350 114375381 2.680000e-05 60.2
46 TraesCS5B01G398700 chr2B 97.297 37 1 0 1933 1969 163424582 163424546 2.070000e-06 63.9
47 TraesCS5B01G398700 chr6A 100.000 32 0 0 1941 1972 428932820 428932789 2.680000e-05 60.2
48 TraesCS5B01G398700 chr1D 100.000 32 0 0 1941 1972 411908266 411908235 2.680000e-05 60.2
49 TraesCS5B01G398700 chr1A 100.000 32 0 0 1941 1972 336012080 336012049 2.680000e-05 60.2
50 TraesCS5B01G398700 chr1A 97.143 35 1 0 1941 1975 465769926 465769892 2.680000e-05 60.2
51 TraesCS5B01G398700 chr1A 100.000 31 0 0 1944 1974 513209165 513209135 9.630000e-05 58.4
52 TraesCS5B01G398700 chrUn 96.970 33 1 0 1944 1976 60597049 60597081 3.460000e-04 56.5
53 TraesCS5B01G398700 chrUn 100.000 28 0 0 1944 1971 47459779 47459752 4.000000e-03 52.8
54 TraesCS5B01G398700 chrUn 100.000 28 0 0 1944 1971 220163689 220163716 4.000000e-03 52.8
55 TraesCS5B01G398700 chrUn 100.000 28 0 0 1944 1971 288038468 288038495 4.000000e-03 52.8
56 TraesCS5B01G398700 chrUn 100.000 28 0 0 1944 1971 302184192 302184165 4.000000e-03 52.8
57 TraesCS5B01G398700 chrUn 100.000 28 0 0 1944 1971 339660388 339660415 4.000000e-03 52.8
58 TraesCS5B01G398700 chrUn 100.000 28 0 0 1944 1971 339662951 339662978 4.000000e-03 52.8
59 TraesCS5B01G398700 chr2A 90.476 42 4 0 707 748 400984003 400984044 3.460000e-04 56.5
60 TraesCS5B01G398700 chr2A 90.476 42 4 0 707 748 402972076 402972117 3.460000e-04 56.5
61 TraesCS5B01G398700 chr6D 100.000 29 0 0 1944 1972 132145602 132145630 1.000000e-03 54.7
62 TraesCS5B01G398700 chr6D 100.000 29 0 0 1944 1972 155386538 155386510 1.000000e-03 54.7
63 TraesCS5B01G398700 chr6D 100.000 29 0 0 1944 1972 205134473 205134445 1.000000e-03 54.7
64 TraesCS5B01G398700 chr6D 100.000 29 0 0 1944 1972 327465045 327465073 1.000000e-03 54.7
65 TraesCS5B01G398700 chr6D 96.875 32 1 0 1944 1975 390380247 390380216 1.000000e-03 54.7
66 TraesCS5B01G398700 chr6D 96.875 32 0 1 1941 1971 192895728 192895697 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G398700 chr5B 576220459 576222950 2491 False 4602 4602 100.0000 1 2492 1 chr5B.!!$F4 2491
1 TraesCS5B01G398700 chr5B 576213362 576213936 574 False 625 625 86.8970 901 1458 1 chr5B.!!$F3 557
2 TraesCS5B01G398700 chr3B 819311008 819311750 742 True 1144 1144 94.3850 1 748 1 chr3B.!!$R3 747
3 TraesCS5B01G398700 chr3B 709125980 709126494 514 True 394 394 80.8060 1460 1971 1 chr3B.!!$R2 511
4 TraesCS5B01G398700 chr5D 469235328 469235870 542 False 636 636 88.4190 936 1458 1 chr5D.!!$F2 522
5 TraesCS5B01G398700 chr5D 469241628 469242430 802 False 565 1024 90.1525 739 2053 2 chr5D.!!$F5 1314
6 TraesCS5B01G398700 chr5A 589315564 589316073 509 False 676 676 90.8200 954 1458 1 chr5A.!!$F1 504
7 TraesCS5B01G398700 chr2D 6968346 6969071 725 False 501 501 79.5780 1 747 1 chr2D.!!$F1 746
8 TraesCS5B01G398700 chr4D 214999685 215000398 713 False 446 446 78.4110 1 746 1 chr4D.!!$F2 745

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
711 712 0.106918 AGGCTCAAAACACCGTGGAA 60.107 50.0 3.03 0.0 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2429 2882 0.03759 AGCCTCTGTCGACTCAGACT 59.962 55.0 17.92 7.19 41.47 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.215742 TATCCGCCGCCTCCAACG 62.216 66.667 0.00 0.00 0.00 4.10
93 94 2.952245 GCATCTCATCCATGCGCC 59.048 61.111 4.18 0.00 37.51 6.53
135 136 6.757010 GCTTTTCTAGATCCAATCTTACACGA 59.243 38.462 0.00 0.00 40.76 4.35
167 168 2.061848 TCAGTTGTGAAATGGGGAGGA 58.938 47.619 0.00 0.00 0.00 3.71
170 171 1.539827 GTTGTGAAATGGGGAGGAACG 59.460 52.381 0.00 0.00 0.00 3.95
189 190 2.882876 GCGGTACAGCTTCGAGGA 59.117 61.111 10.99 0.00 0.00 3.71
228 229 0.172803 GGAGTACAGTACAGTGGGCG 59.827 60.000 13.37 0.00 0.00 6.13
232 233 1.475280 GTACAGTACAGTGGGCGATGA 59.525 52.381 5.79 0.00 0.00 2.92
234 235 1.337823 ACAGTACAGTGGGCGATGAAC 60.338 52.381 0.00 0.00 0.00 3.18
315 316 8.442632 AATAAAATAGTAAAGAAGGGGCGTAC 57.557 34.615 0.00 0.00 0.00 3.67
360 361 2.494918 GTACCGAGGCAGACGCAT 59.505 61.111 0.00 0.00 41.24 4.73
389 390 3.936203 AAACTCGCCGGCTGGACA 61.936 61.111 26.68 0.00 37.49 4.02
496 497 1.658596 GATAGCATTGCGAACGACACA 59.341 47.619 2.38 0.00 0.00 3.72
506 507 1.072348 CGAACGACACACTGAACGAAC 60.072 52.381 0.00 0.00 0.00 3.95
525 526 4.467084 GGCCCGTGCGGAGAATGA 62.467 66.667 12.71 0.00 38.85 2.57
536 537 3.250762 TGCGGAGAATGAGAAGTGTTTTG 59.749 43.478 0.00 0.00 0.00 2.44
539 540 4.752101 CGGAGAATGAGAAGTGTTTTGACT 59.248 41.667 0.00 0.00 0.00 3.41
540 541 5.333645 CGGAGAATGAGAAGTGTTTTGACTG 60.334 44.000 0.00 0.00 0.00 3.51
541 542 5.049129 GGAGAATGAGAAGTGTTTTGACTGG 60.049 44.000 0.00 0.00 0.00 4.00
542 543 5.684704 AGAATGAGAAGTGTTTTGACTGGA 58.315 37.500 0.00 0.00 0.00 3.86
543 544 5.529060 AGAATGAGAAGTGTTTTGACTGGAC 59.471 40.000 0.00 0.00 0.00 4.02
544 545 3.541632 TGAGAAGTGTTTTGACTGGACC 58.458 45.455 0.00 0.00 0.00 4.46
545 546 3.199946 TGAGAAGTGTTTTGACTGGACCT 59.800 43.478 0.00 0.00 0.00 3.85
546 547 3.545703 AGAAGTGTTTTGACTGGACCTG 58.454 45.455 0.00 0.00 0.00 4.00
547 548 2.348411 AGTGTTTTGACTGGACCTGG 57.652 50.000 3.15 0.00 0.00 4.45
548 549 1.133792 AGTGTTTTGACTGGACCTGGG 60.134 52.381 0.00 0.00 0.00 4.45
549 550 0.467290 TGTTTTGACTGGACCTGGGC 60.467 55.000 0.00 0.00 0.00 5.36
550 551 1.152830 TTTTGACTGGACCTGGGCC 59.847 57.895 13.16 13.16 0.00 5.80
551 552 1.360393 TTTTGACTGGACCTGGGCCT 61.360 55.000 21.75 0.00 0.00 5.19
552 553 1.360393 TTTGACTGGACCTGGGCCTT 61.360 55.000 21.75 6.55 0.00 4.35
553 554 1.360393 TTGACTGGACCTGGGCCTTT 61.360 55.000 21.75 6.12 0.00 3.11
554 555 1.303643 GACTGGACCTGGGCCTTTG 60.304 63.158 21.75 12.42 0.00 2.77
555 556 1.774217 ACTGGACCTGGGCCTTTGA 60.774 57.895 21.75 0.00 0.00 2.69
556 557 1.142688 ACTGGACCTGGGCCTTTGAT 61.143 55.000 21.75 0.00 0.00 2.57
557 558 0.682209 CTGGACCTGGGCCTTTGATG 60.682 60.000 21.75 0.00 0.00 3.07
558 559 1.380380 GGACCTGGGCCTTTGATGG 60.380 63.158 12.69 0.00 0.00 3.51
565 566 4.579127 GCCTTTGATGGCCCGTAT 57.421 55.556 0.00 0.00 46.82 3.06
566 567 3.717842 GCCTTTGATGGCCCGTATA 57.282 52.632 0.00 0.00 46.82 1.47
567 568 2.200373 GCCTTTGATGGCCCGTATAT 57.800 50.000 0.00 0.00 46.82 0.86
568 569 1.812571 GCCTTTGATGGCCCGTATATG 59.187 52.381 0.00 0.00 46.82 1.78
569 570 2.436417 CCTTTGATGGCCCGTATATGG 58.564 52.381 0.00 3.74 0.00 2.74
570 571 2.039746 CCTTTGATGGCCCGTATATGGA 59.960 50.000 12.92 0.00 0.00 3.41
571 572 3.338249 CTTTGATGGCCCGTATATGGAG 58.662 50.000 12.92 4.02 0.00 3.86
572 573 2.319025 TGATGGCCCGTATATGGAGA 57.681 50.000 12.92 0.00 0.00 3.71
573 574 2.179427 TGATGGCCCGTATATGGAGAG 58.821 52.381 12.92 0.00 0.00 3.20
574 575 1.482593 GATGGCCCGTATATGGAGAGG 59.517 57.143 12.92 0.00 0.00 3.69
575 576 0.544357 TGGCCCGTATATGGAGAGGG 60.544 60.000 12.92 2.75 44.72 4.30
576 577 0.252103 GGCCCGTATATGGAGAGGGA 60.252 60.000 12.92 0.00 44.70 4.20
577 578 0.896226 GCCCGTATATGGAGAGGGAC 59.104 60.000 12.92 0.00 44.70 4.46
578 579 1.174783 CCCGTATATGGAGAGGGACG 58.825 60.000 12.92 0.00 44.70 4.79
579 580 1.174783 CCGTATATGGAGAGGGACGG 58.825 60.000 4.85 0.00 43.27 4.79
580 581 1.174783 CGTATATGGAGAGGGACGGG 58.825 60.000 0.00 0.00 0.00 5.28
581 582 1.271762 CGTATATGGAGAGGGACGGGA 60.272 57.143 0.00 0.00 0.00 5.14
582 583 2.448453 GTATATGGAGAGGGACGGGAG 58.552 57.143 0.00 0.00 0.00 4.30
583 584 0.543174 ATATGGAGAGGGACGGGAGC 60.543 60.000 0.00 0.00 0.00 4.70
584 585 1.656092 TATGGAGAGGGACGGGAGCT 61.656 60.000 0.00 0.00 0.00 4.09
585 586 2.835895 GGAGAGGGACGGGAGCTC 60.836 72.222 4.71 4.71 0.00 4.09
586 587 3.213402 GAGAGGGACGGGAGCTCG 61.213 72.222 7.83 0.00 0.00 5.03
591 592 2.516460 GGACGGGAGCTCGCTCTA 60.516 66.667 26.13 0.00 42.38 2.43
592 593 2.716864 GACGGGAGCTCGCTCTAC 59.283 66.667 26.13 12.03 42.38 2.59
593 594 2.045242 ACGGGAGCTCGCTCTACA 60.045 61.111 26.13 0.00 42.38 2.74
594 595 1.448922 GACGGGAGCTCGCTCTACAT 61.449 60.000 26.13 6.71 42.38 2.29
595 596 0.179026 ACGGGAGCTCGCTCTACATA 60.179 55.000 26.13 0.00 42.38 2.29
596 597 0.519519 CGGGAGCTCGCTCTACATAG 59.480 60.000 26.13 6.45 42.38 2.23
597 598 0.242555 GGGAGCTCGCTCTACATAGC 59.757 60.000 22.62 0.00 42.38 2.97
598 599 0.955178 GGAGCTCGCTCTACATAGCA 59.045 55.000 17.48 0.00 42.91 3.49
599 600 1.068610 GGAGCTCGCTCTACATAGCAG 60.069 57.143 17.48 0.00 42.91 4.24
600 601 0.313672 AGCTCGCTCTACATAGCAGC 59.686 55.000 10.35 10.35 42.91 5.25
603 604 3.943967 GCTCTACATAGCAGCGGC 58.056 61.111 0.00 0.00 42.30 6.53
604 605 1.666234 GCTCTACATAGCAGCGGCC 60.666 63.158 4.82 0.00 42.30 6.13
605 606 1.005630 CTCTACATAGCAGCGGCCC 60.006 63.158 4.82 0.00 42.56 5.80
606 607 1.748329 CTCTACATAGCAGCGGCCCA 61.748 60.000 4.82 0.00 42.56 5.36
607 608 1.595382 CTACATAGCAGCGGCCCAC 60.595 63.158 4.82 0.00 42.56 4.61
623 624 2.573869 ACGAGATGGTGCGTGGAG 59.426 61.111 0.00 0.00 39.56 3.86
634 635 4.717629 CGTGGAGCGCCTGAACGA 62.718 66.667 11.60 0.00 36.38 3.85
635 636 3.112709 GTGGAGCGCCTGAACGAC 61.113 66.667 8.34 0.00 34.06 4.34
636 637 4.717629 TGGAGCGCCTGAACGACG 62.718 66.667 8.34 0.00 34.06 5.12
637 638 4.415332 GGAGCGCCTGAACGACGA 62.415 66.667 2.29 0.00 34.06 4.20
638 639 3.173240 GAGCGCCTGAACGACGAC 61.173 66.667 2.29 0.00 34.06 4.34
639 640 4.719369 AGCGCCTGAACGACGACC 62.719 66.667 2.29 0.00 34.06 4.79
643 644 4.430765 CCTGAACGACGACCCGGG 62.431 72.222 22.25 22.25 0.00 5.73
644 645 3.367743 CTGAACGACGACCCGGGA 61.368 66.667 32.02 0.00 0.00 5.14
645 646 2.911509 TGAACGACGACCCGGGAA 60.912 61.111 32.02 0.00 0.00 3.97
646 647 2.126189 GAACGACGACCCGGGAAG 60.126 66.667 32.02 22.66 0.00 3.46
647 648 2.598394 AACGACGACCCGGGAAGA 60.598 61.111 32.02 0.00 0.00 2.87
648 649 2.809266 GAACGACGACCCGGGAAGAC 62.809 65.000 32.02 18.92 0.00 3.01
649 650 3.060615 CGACGACCCGGGAAGACT 61.061 66.667 32.02 2.86 0.00 3.24
650 651 2.572284 GACGACCCGGGAAGACTG 59.428 66.667 32.02 12.04 0.00 3.51
651 652 2.995574 ACGACCCGGGAAGACTGG 60.996 66.667 32.02 8.20 45.92 4.00
656 657 3.717294 CCGGGAAGACTGGGGGTG 61.717 72.222 0.00 0.00 42.34 4.61
657 658 2.606519 CGGGAAGACTGGGGGTGA 60.607 66.667 0.00 0.00 0.00 4.02
658 659 1.995626 CGGGAAGACTGGGGGTGAT 60.996 63.158 0.00 0.00 0.00 3.06
659 660 1.915983 GGGAAGACTGGGGGTGATC 59.084 63.158 0.00 0.00 0.00 2.92
660 661 0.621862 GGGAAGACTGGGGGTGATCT 60.622 60.000 0.00 0.00 0.00 2.75
661 662 1.344087 GGGAAGACTGGGGGTGATCTA 60.344 57.143 0.00 0.00 0.00 1.98
662 663 1.763545 GGAAGACTGGGGGTGATCTAC 59.236 57.143 0.00 0.00 0.00 2.59
663 664 2.467880 GAAGACTGGGGGTGATCTACA 58.532 52.381 0.00 0.00 0.00 2.74
664 665 2.877154 AGACTGGGGGTGATCTACAT 57.123 50.000 0.00 0.00 0.00 2.29
665 666 2.683768 AGACTGGGGGTGATCTACATC 58.316 52.381 0.00 0.00 0.00 3.06
666 667 1.341531 GACTGGGGGTGATCTACATCG 59.658 57.143 0.00 0.00 0.00 3.84
667 668 1.343075 ACTGGGGGTGATCTACATCGT 60.343 52.381 0.00 0.00 0.00 3.73
668 669 2.091499 ACTGGGGGTGATCTACATCGTA 60.091 50.000 0.00 0.00 0.00 3.43
669 670 2.296471 CTGGGGGTGATCTACATCGTAC 59.704 54.545 0.00 0.00 0.00 3.67
670 671 1.268899 GGGGGTGATCTACATCGTACG 59.731 57.143 9.53 9.53 0.00 3.67
671 672 1.335689 GGGGTGATCTACATCGTACGC 60.336 57.143 11.24 0.00 0.00 4.42
672 673 1.662309 GGGTGATCTACATCGTACGCG 60.662 57.143 11.24 3.53 39.92 6.01
682 683 1.061411 TCGTACGCGAAGTGATCCG 59.939 57.895 15.93 2.61 44.92 4.18
683 684 1.937846 CGTACGCGAAGTGATCCGG 60.938 63.158 15.93 0.00 43.07 5.14
684 685 2.103538 TACGCGAAGTGATCCGGC 59.896 61.111 15.93 0.00 43.07 6.13
688 689 4.514577 CGAAGTGATCCGGCGGCT 62.515 66.667 23.83 13.03 0.00 5.52
689 690 2.586357 GAAGTGATCCGGCGGCTC 60.586 66.667 23.83 22.87 0.00 4.70
690 691 3.077556 AAGTGATCCGGCGGCTCT 61.078 61.111 27.66 15.41 0.00 4.09
691 692 3.376935 AAGTGATCCGGCGGCTCTG 62.377 63.158 27.66 2.36 0.00 3.35
692 693 3.838271 GTGATCCGGCGGCTCTGA 61.838 66.667 27.66 9.10 0.00 3.27
693 694 3.531207 TGATCCGGCGGCTCTGAG 61.531 66.667 27.66 0.00 0.00 3.35
694 695 4.292178 GATCCGGCGGCTCTGAGG 62.292 72.222 23.83 0.00 0.00 3.86
699 700 4.087892 GGCGGCTCTGAGGCTCAA 62.088 66.667 25.94 8.73 38.85 3.02
700 701 2.046892 GCGGCTCTGAGGCTCAAA 60.047 61.111 25.94 4.12 38.85 2.69
701 702 1.672356 GCGGCTCTGAGGCTCAAAA 60.672 57.895 25.94 8.78 38.85 2.44
702 703 1.916697 GCGGCTCTGAGGCTCAAAAC 61.917 60.000 25.94 9.96 38.85 2.43
703 704 0.603707 CGGCTCTGAGGCTCAAAACA 60.604 55.000 25.94 1.98 38.85 2.83
704 705 0.877743 GGCTCTGAGGCTCAAAACAC 59.122 55.000 22.52 6.41 37.85 3.32
705 706 0.877743 GCTCTGAGGCTCAAAACACC 59.122 55.000 19.29 0.47 0.00 4.16
706 707 1.151668 CTCTGAGGCTCAAAACACCG 58.848 55.000 19.29 4.98 0.00 4.94
707 708 0.468226 TCTGAGGCTCAAAACACCGT 59.532 50.000 19.29 0.00 0.00 4.83
708 709 0.588252 CTGAGGCTCAAAACACCGTG 59.412 55.000 19.29 0.00 0.00 4.94
709 710 0.817634 TGAGGCTCAAAACACCGTGG 60.818 55.000 16.28 0.00 0.00 4.94
710 711 0.534203 GAGGCTCAAAACACCGTGGA 60.534 55.000 10.25 0.00 0.00 4.02
711 712 0.106918 AGGCTCAAAACACCGTGGAA 60.107 50.000 3.03 0.00 0.00 3.53
712 713 0.310854 GGCTCAAAACACCGTGGAAG 59.689 55.000 3.03 0.00 0.00 3.46
713 714 0.317854 GCTCAAAACACCGTGGAAGC 60.318 55.000 3.03 0.91 0.00 3.86
714 715 1.308998 CTCAAAACACCGTGGAAGCT 58.691 50.000 3.03 0.00 0.00 3.74
715 716 1.264288 CTCAAAACACCGTGGAAGCTC 59.736 52.381 3.03 0.00 0.00 4.09
716 717 0.310854 CAAAACACCGTGGAAGCTCC 59.689 55.000 3.03 0.00 36.96 4.70
717 718 1.164041 AAAACACCGTGGAAGCTCCG 61.164 55.000 3.03 0.00 40.17 4.63
718 719 2.319890 AAACACCGTGGAAGCTCCGT 62.320 55.000 3.03 0.00 40.17 4.69
719 720 2.738521 CACCGTGGAAGCTCCGTG 60.739 66.667 0.00 0.00 40.17 4.94
720 721 4.003788 ACCGTGGAAGCTCCGTGG 62.004 66.667 0.00 0.00 40.17 4.94
721 722 4.003788 CCGTGGAAGCTCCGTGGT 62.004 66.667 0.00 0.00 40.17 4.16
722 723 2.642254 CCGTGGAAGCTCCGTGGTA 61.642 63.158 0.00 0.00 40.17 3.25
723 724 1.153823 CGTGGAAGCTCCGTGGTAG 60.154 63.158 0.00 0.00 40.17 3.18
724 725 1.448013 GTGGAAGCTCCGTGGTAGC 60.448 63.158 0.00 0.00 40.17 3.58
725 726 2.187163 GGAAGCTCCGTGGTAGCC 59.813 66.667 0.00 0.00 41.02 3.93
726 727 2.187163 GAAGCTCCGTGGTAGCCC 59.813 66.667 0.00 0.00 41.02 5.19
727 728 2.284699 AAGCTCCGTGGTAGCCCT 60.285 61.111 0.00 0.00 41.02 5.19
728 729 2.579684 GAAGCTCCGTGGTAGCCCTG 62.580 65.000 0.00 0.00 41.02 4.45
729 730 3.391382 GCTCCGTGGTAGCCCTGT 61.391 66.667 0.00 0.00 33.73 4.00
730 731 2.955881 GCTCCGTGGTAGCCCTGTT 61.956 63.158 0.00 0.00 33.73 3.16
731 732 1.610554 GCTCCGTGGTAGCCCTGTTA 61.611 60.000 0.00 0.00 33.73 2.41
732 733 1.120530 CTCCGTGGTAGCCCTGTTAT 58.879 55.000 0.00 0.00 0.00 1.89
733 734 2.313317 CTCCGTGGTAGCCCTGTTATA 58.687 52.381 0.00 0.00 0.00 0.98
734 735 2.034124 TCCGTGGTAGCCCTGTTATAC 58.966 52.381 0.00 0.00 0.00 1.47
735 736 2.037144 CCGTGGTAGCCCTGTTATACT 58.963 52.381 0.00 0.00 0.00 2.12
736 737 2.223971 CCGTGGTAGCCCTGTTATACTG 60.224 54.545 0.00 0.00 0.00 2.74
737 738 2.429610 CGTGGTAGCCCTGTTATACTGT 59.570 50.000 0.00 0.00 0.00 3.55
738 739 3.118884 CGTGGTAGCCCTGTTATACTGTT 60.119 47.826 0.00 0.00 0.00 3.16
739 740 4.622220 CGTGGTAGCCCTGTTATACTGTTT 60.622 45.833 0.00 0.00 0.00 2.83
740 741 4.874396 GTGGTAGCCCTGTTATACTGTTTC 59.126 45.833 0.00 0.00 0.00 2.78
741 742 4.781087 TGGTAGCCCTGTTATACTGTTTCT 59.219 41.667 0.00 0.00 0.00 2.52
742 743 5.105064 TGGTAGCCCTGTTATACTGTTTCTC 60.105 44.000 0.00 0.00 0.00 2.87
743 744 5.105064 GGTAGCCCTGTTATACTGTTTCTCA 60.105 44.000 0.00 0.00 0.00 3.27
744 745 5.499004 AGCCCTGTTATACTGTTTCTCAA 57.501 39.130 0.00 0.00 0.00 3.02
745 746 6.067217 AGCCCTGTTATACTGTTTCTCAAT 57.933 37.500 0.00 0.00 0.00 2.57
746 747 6.485171 AGCCCTGTTATACTGTTTCTCAATT 58.515 36.000 0.00 0.00 0.00 2.32
747 748 6.599638 AGCCCTGTTATACTGTTTCTCAATTC 59.400 38.462 0.00 0.00 0.00 2.17
748 749 6.374333 GCCCTGTTATACTGTTTCTCAATTCA 59.626 38.462 0.00 0.00 0.00 2.57
749 750 7.626452 GCCCTGTTATACTGTTTCTCAATTCAC 60.626 40.741 0.00 0.00 0.00 3.18
750 751 7.390440 CCCTGTTATACTGTTTCTCAATTCACA 59.610 37.037 0.00 0.00 0.00 3.58
751 752 8.446273 CCTGTTATACTGTTTCTCAATTCACAG 58.554 37.037 0.00 0.00 42.08 3.66
760 761 4.422073 TCTCAATTCACAGGCCGAATAT 57.578 40.909 4.96 0.00 32.79 1.28
872 873 5.105957 ACGCAGAAATGCCAAAATGTATACA 60.106 36.000 8.27 8.27 0.00 2.29
882 883 2.032680 AATGTATACAAACGCGCCCT 57.967 45.000 10.14 0.00 0.00 5.19
887 888 1.632046 ATACAAACGCGCCCTTGTCG 61.632 55.000 21.22 0.00 37.05 4.35
888 889 2.696409 TACAAACGCGCCCTTGTCGA 62.696 55.000 21.22 6.38 37.05 4.20
902 903 1.006825 TGTCGATCGGTCTGCGTTTG 61.007 55.000 16.41 0.00 0.00 2.93
924 925 0.678395 CCTCTCTGGCTACATCGCAT 59.322 55.000 0.00 0.00 0.00 4.73
932 933 2.223900 TGGCTACATCGCATTGAGAGAG 60.224 50.000 0.00 0.00 0.00 3.20
1143 1148 2.515523 CCCATCCGCAAGCTCCTG 60.516 66.667 0.00 0.00 0.00 3.86
1307 1333 4.899239 GCTCATCAGGGCGACGGG 62.899 72.222 0.00 0.00 0.00 5.28
1337 1661 0.315251 GAAAAGAAGGTGCAGTGGCC 59.685 55.000 0.00 0.00 40.13 5.36
1377 1825 3.939939 TGCTGCTTCCAGGTCGCA 61.940 61.111 0.00 5.50 39.54 5.10
1458 1906 1.611965 GCTCAGGATTCCCCAGCTT 59.388 57.895 13.85 0.00 36.44 3.74
1478 1926 6.102897 GCTTAGGCTAATCATAGTGGAGAA 57.897 41.667 7.54 0.00 35.22 2.87
1542 1990 7.983166 TTATTACCTTCATAGTGGGTAGTGT 57.017 36.000 0.00 0.00 37.00 3.55
1544 1992 3.786553 ACCTTCATAGTGGGTAGTGTCA 58.213 45.455 0.00 0.00 0.00 3.58
1550 1998 6.901081 TCATAGTGGGTAGTGTCATAGATG 57.099 41.667 0.00 0.00 0.00 2.90
1552 2000 6.265422 TCATAGTGGGTAGTGTCATAGATGTG 59.735 42.308 0.00 0.00 0.00 3.21
1556 2004 5.128171 GTGGGTAGTGTCATAGATGTGGTAA 59.872 44.000 0.00 0.00 0.00 2.85
1608 2056 7.602517 AGACTCATTATATATTGGAAAGCGC 57.397 36.000 0.00 0.00 0.00 5.92
1614 2063 8.882736 TCATTATATATTGGAAAGCGCTATGTG 58.117 33.333 12.05 1.43 0.00 3.21
1616 2065 9.618890 ATTATATATTGGAAAGCGCTATGTGAT 57.381 29.630 12.05 5.51 0.00 3.06
1621 2070 3.202906 GGAAAGCGCTATGTGATGGTAA 58.797 45.455 12.05 0.00 0.00 2.85
1651 2100 9.732130 ATTATGTTATTCTATTTGCCTCTCTCC 57.268 33.333 0.00 0.00 0.00 3.71
1654 2103 6.384015 TGTTATTCTATTTGCCTCTCTCCTCA 59.616 38.462 0.00 0.00 0.00 3.86
1659 2108 6.821388 TCTATTTGCCTCTCTCCTCATTAAC 58.179 40.000 0.00 0.00 0.00 2.01
1661 2110 6.814954 ATTTGCCTCTCTCCTCATTAACTA 57.185 37.500 0.00 0.00 0.00 2.24
1662 2111 6.814954 TTTGCCTCTCTCCTCATTAACTAT 57.185 37.500 0.00 0.00 0.00 2.12
1663 2112 6.814954 TTGCCTCTCTCCTCATTAACTATT 57.185 37.500 0.00 0.00 0.00 1.73
1672 2121 6.767902 TCTCCTCATTAACTATTTGCCACATC 59.232 38.462 0.00 0.00 0.00 3.06
1674 2123 6.318648 TCCTCATTAACTATTTGCCACATCAC 59.681 38.462 0.00 0.00 0.00 3.06
1678 2127 6.849085 TTAACTATTTGCCACATCACCATT 57.151 33.333 0.00 0.00 0.00 3.16
1681 2130 6.849085 ACTATTTGCCACATCACCATTTTA 57.151 33.333 0.00 0.00 0.00 1.52
1682 2131 6.630071 ACTATTTGCCACATCACCATTTTAC 58.370 36.000 0.00 0.00 0.00 2.01
1683 2132 5.743636 ATTTGCCACATCACCATTTTACT 57.256 34.783 0.00 0.00 0.00 2.24
1684 2133 5.543507 TTTGCCACATCACCATTTTACTT 57.456 34.783 0.00 0.00 0.00 2.24
1686 2135 6.849085 TTGCCACATCACCATTTTACTTAT 57.151 33.333 0.00 0.00 0.00 1.73
1687 2136 6.206395 TGCCACATCACCATTTTACTTATG 57.794 37.500 0.00 0.00 0.00 1.90
1688 2137 5.714333 TGCCACATCACCATTTTACTTATGT 59.286 36.000 0.00 0.00 0.00 2.29
1689 2138 6.035843 GCCACATCACCATTTTACTTATGTG 58.964 40.000 0.00 0.00 41.35 3.21
1691 2140 6.035843 CACATCACCATTTTACTTATGTGGC 58.964 40.000 0.00 0.00 39.19 5.01
1693 2142 6.380846 ACATCACCATTTTACTTATGTGGCAT 59.619 34.615 0.00 0.00 33.24 4.40
1694 2143 6.449635 TCACCATTTTACTTATGTGGCATC 57.550 37.500 0.00 0.00 33.24 3.91
1695 2144 6.186957 TCACCATTTTACTTATGTGGCATCT 58.813 36.000 0.00 0.00 33.24 2.90
1696 2145 7.342581 TCACCATTTTACTTATGTGGCATCTA 58.657 34.615 0.00 0.00 33.24 1.98
1697 2146 7.998383 TCACCATTTTACTTATGTGGCATCTAT 59.002 33.333 0.00 0.00 33.24 1.98
1698 2147 8.077991 CACCATTTTACTTATGTGGCATCTATG 58.922 37.037 0.00 0.00 33.24 2.23
1699 2148 7.779798 ACCATTTTACTTATGTGGCATCTATGT 59.220 33.333 0.00 0.00 33.24 2.29
1700 2149 8.632679 CCATTTTACTTATGTGGCATCTATGTT 58.367 33.333 0.00 0.00 0.00 2.71
1703 2152 9.899661 TTTTACTTATGTGGCATCTATGTTACT 57.100 29.630 0.00 0.00 0.00 2.24
1716 2166 8.895737 GCATCTATGTTACTATCTACTACCTCC 58.104 40.741 0.00 0.00 0.00 4.30
1723 2173 1.135094 ATCTACTACCTCCGTCCGGA 58.865 55.000 0.00 0.00 42.90 5.14
1740 2190 3.722627 TCCGGATTTATTGGTCCCCATTA 59.277 43.478 0.00 0.00 31.53 1.90
1813 2264 8.109391 CGCATGTCACCAAACATTATATTTTTG 58.891 33.333 0.00 0.00 37.78 2.44
1935 2387 3.297736 AGAGGACCTATAAACCAGGACG 58.702 50.000 0.00 0.00 36.61 4.79
1947 2399 1.287146 ACCAGGACGGAGGTAGTATGT 59.713 52.381 0.00 0.00 36.07 2.29
1951 2403 4.205587 CAGGACGGAGGTAGTATGTTACT 58.794 47.826 0.00 0.00 42.68 2.24
1961 2413 6.919158 AGGTAGTATGTTACTCCCACTATGA 58.081 40.000 0.02 0.00 37.26 2.15
2018 2471 0.543277 TGCCTGCTCCACCTCATTAG 59.457 55.000 0.00 0.00 0.00 1.73
2031 2484 8.073467 TCCACCTCATTAGTTTTCTTGTTTTT 57.927 30.769 0.00 0.00 0.00 1.94
2054 2507 6.605471 TTCCATGTCTACTGATGTACTTGT 57.395 37.500 0.00 0.00 0.00 3.16
2055 2508 6.605471 TCCATGTCTACTGATGTACTTGTT 57.395 37.500 0.00 0.00 0.00 2.83
2056 2509 7.004555 TCCATGTCTACTGATGTACTTGTTT 57.995 36.000 0.00 0.00 0.00 2.83
2058 2511 6.650807 CCATGTCTACTGATGTACTTGTTTGT 59.349 38.462 0.00 0.00 0.00 2.83
2059 2512 7.817478 CCATGTCTACTGATGTACTTGTTTGTA 59.183 37.037 0.00 0.00 0.00 2.41
2060 2513 9.371136 CATGTCTACTGATGTACTTGTTTGTAT 57.629 33.333 0.00 0.00 0.00 2.29
2063 2516 8.033038 GTCTACTGATGTACTTGTTTGTATGGA 58.967 37.037 0.00 0.00 0.00 3.41
2064 2517 8.033038 TCTACTGATGTACTTGTTTGTATGGAC 58.967 37.037 0.00 0.00 0.00 4.02
2066 2519 7.903145 ACTGATGTACTTGTTTGTATGGACTA 58.097 34.615 0.00 0.00 0.00 2.59
2067 2520 8.540388 ACTGATGTACTTGTTTGTATGGACTAT 58.460 33.333 0.00 0.00 0.00 2.12
2069 2522 8.536175 TGATGTACTTGTTTGTATGGACTATGA 58.464 33.333 0.00 0.00 0.00 2.15
2070 2523 9.378551 GATGTACTTGTTTGTATGGACTATGAA 57.621 33.333 0.00 0.00 0.00 2.57
2071 2524 8.771920 TGTACTTGTTTGTATGGACTATGAAG 57.228 34.615 0.00 0.00 0.00 3.02
2072 2525 6.743575 ACTTGTTTGTATGGACTATGAAGC 57.256 37.500 0.00 0.00 0.00 3.86
2073 2526 5.351465 ACTTGTTTGTATGGACTATGAAGCG 59.649 40.000 0.00 0.00 0.00 4.68
2074 2527 4.827692 TGTTTGTATGGACTATGAAGCGT 58.172 39.130 0.00 0.00 0.00 5.07
2075 2528 5.968254 TGTTTGTATGGACTATGAAGCGTA 58.032 37.500 0.00 0.00 0.00 4.42
2076 2529 6.578944 TGTTTGTATGGACTATGAAGCGTAT 58.421 36.000 0.00 0.00 0.00 3.06
2077 2530 6.478673 TGTTTGTATGGACTATGAAGCGTATG 59.521 38.462 0.00 0.00 0.00 2.39
2078 2531 6.399639 TTGTATGGACTATGAAGCGTATGA 57.600 37.500 0.00 0.00 0.00 2.15
2079 2532 6.399639 TGTATGGACTATGAAGCGTATGAA 57.600 37.500 0.00 0.00 0.00 2.57
2080 2533 6.993079 TGTATGGACTATGAAGCGTATGAAT 58.007 36.000 0.00 0.00 0.00 2.57
2081 2534 8.117813 TGTATGGACTATGAAGCGTATGAATA 57.882 34.615 0.00 0.00 0.00 1.75
2082 2535 8.581578 TGTATGGACTATGAAGCGTATGAATAA 58.418 33.333 0.00 0.00 0.00 1.40
2083 2536 9.077674 GTATGGACTATGAAGCGTATGAATAAG 57.922 37.037 0.00 0.00 0.00 1.73
2084 2537 7.050970 TGGACTATGAAGCGTATGAATAAGT 57.949 36.000 0.00 0.00 0.00 2.24
2085 2538 7.497595 TGGACTATGAAGCGTATGAATAAGTT 58.502 34.615 0.00 0.00 0.00 2.66
2086 2539 8.635328 TGGACTATGAAGCGTATGAATAAGTTA 58.365 33.333 0.00 0.00 0.00 2.24
2087 2540 9.472361 GGACTATGAAGCGTATGAATAAGTTAA 57.528 33.333 0.00 0.00 0.00 2.01
2113 2566 9.825972 ATTTGAAGATACCGAATAAATTATGCG 57.174 29.630 6.40 6.40 36.96 4.73
2114 2567 8.596271 TTGAAGATACCGAATAAATTATGCGA 57.404 30.769 14.54 0.00 39.62 5.10
2115 2568 8.596271 TGAAGATACCGAATAAATTATGCGAA 57.404 30.769 14.54 3.30 39.62 4.70
2116 2569 9.214957 TGAAGATACCGAATAAATTATGCGAAT 57.785 29.630 14.54 7.72 39.62 3.34
2117 2570 9.690434 GAAGATACCGAATAAATTATGCGAATC 57.310 33.333 14.54 14.90 39.62 2.52
2118 2571 8.771920 AGATACCGAATAAATTATGCGAATCA 57.228 30.769 14.54 0.00 39.62 2.57
2119 2572 9.214957 AGATACCGAATAAATTATGCGAATCAA 57.785 29.630 14.54 0.00 39.62 2.57
2120 2573 9.988350 GATACCGAATAAATTATGCGAATCAAT 57.012 29.630 14.54 1.38 39.62 2.57
2123 2576 8.999431 ACCGAATAAATTATGCGAATCAATACT 58.001 29.630 14.54 0.00 39.62 2.12
2124 2577 9.825972 CCGAATAAATTATGCGAATCAATACTT 57.174 29.630 14.54 0.00 39.62 2.24
2130 2583 9.638239 AAATTATGCGAATCAATACTTGTTTGT 57.362 25.926 0.00 0.00 0.00 2.83
2131 2584 8.619146 ATTATGCGAATCAATACTTGTTTGTG 57.381 30.769 0.00 0.00 0.00 3.33
2132 2585 5.431420 TGCGAATCAATACTTGTTTGTGT 57.569 34.783 0.00 0.00 0.00 3.72
2133 2586 5.448438 TGCGAATCAATACTTGTTTGTGTC 58.552 37.500 0.00 0.00 0.00 3.67
2134 2587 5.238432 TGCGAATCAATACTTGTTTGTGTCT 59.762 36.000 0.00 0.00 0.00 3.41
2135 2588 5.565259 GCGAATCAATACTTGTTTGTGTCTG 59.435 40.000 0.00 0.00 0.00 3.51
2136 2589 6.565811 GCGAATCAATACTTGTTTGTGTCTGA 60.566 38.462 0.00 0.00 0.00 3.27
2137 2590 7.521529 CGAATCAATACTTGTTTGTGTCTGAT 58.478 34.615 0.00 0.00 0.00 2.90
2138 2591 8.017373 CGAATCAATACTTGTTTGTGTCTGATT 58.983 33.333 0.00 0.00 34.57 2.57
2139 2592 9.683069 GAATCAATACTTGTTTGTGTCTGATTT 57.317 29.630 0.00 0.00 32.63 2.17
2140 2593 9.683069 AATCAATACTTGTTTGTGTCTGATTTC 57.317 29.630 0.00 0.00 29.10 2.17
2141 2594 7.648142 TCAATACTTGTTTGTGTCTGATTTCC 58.352 34.615 0.00 0.00 0.00 3.13
2142 2595 4.918810 ACTTGTTTGTGTCTGATTTCCC 57.081 40.909 0.00 0.00 0.00 3.97
2143 2596 4.536765 ACTTGTTTGTGTCTGATTTCCCT 58.463 39.130 0.00 0.00 0.00 4.20
2144 2597 4.339247 ACTTGTTTGTGTCTGATTTCCCTG 59.661 41.667 0.00 0.00 0.00 4.45
2145 2598 2.622942 TGTTTGTGTCTGATTTCCCTGC 59.377 45.455 0.00 0.00 0.00 4.85
2146 2599 2.622942 GTTTGTGTCTGATTTCCCTGCA 59.377 45.455 0.00 0.00 0.00 4.41
2147 2600 2.655090 TGTGTCTGATTTCCCTGCAA 57.345 45.000 0.00 0.00 0.00 4.08
2148 2601 3.159213 TGTGTCTGATTTCCCTGCAAT 57.841 42.857 0.00 0.00 0.00 3.56
2149 2602 4.299586 TGTGTCTGATTTCCCTGCAATA 57.700 40.909 0.00 0.00 0.00 1.90
2150 2603 4.858850 TGTGTCTGATTTCCCTGCAATAT 58.141 39.130 0.00 0.00 0.00 1.28
2151 2604 5.263599 TGTGTCTGATTTCCCTGCAATATT 58.736 37.500 0.00 0.00 0.00 1.28
2152 2605 5.357878 TGTGTCTGATTTCCCTGCAATATTC 59.642 40.000 0.00 0.00 0.00 1.75
2153 2606 5.591877 GTGTCTGATTTCCCTGCAATATTCT 59.408 40.000 0.00 0.00 0.00 2.40
2154 2607 6.767902 GTGTCTGATTTCCCTGCAATATTCTA 59.232 38.462 0.00 0.00 0.00 2.10
2155 2608 6.767902 TGTCTGATTTCCCTGCAATATTCTAC 59.232 38.462 0.00 0.00 0.00 2.59
2156 2609 6.205658 GTCTGATTTCCCTGCAATATTCTACC 59.794 42.308 0.00 0.00 0.00 3.18
2157 2610 6.101734 TCTGATTTCCCTGCAATATTCTACCT 59.898 38.462 0.00 0.00 0.00 3.08
2158 2611 6.672593 TGATTTCCCTGCAATATTCTACCTT 58.327 36.000 0.00 0.00 0.00 3.50
2159 2612 7.125391 TGATTTCCCTGCAATATTCTACCTTT 58.875 34.615 0.00 0.00 0.00 3.11
2160 2613 7.619302 TGATTTCCCTGCAATATTCTACCTTTT 59.381 33.333 0.00 0.00 0.00 2.27
2161 2614 7.404671 TTTCCCTGCAATATTCTACCTTTTC 57.595 36.000 0.00 0.00 0.00 2.29
2162 2615 6.327386 TCCCTGCAATATTCTACCTTTTCT 57.673 37.500 0.00 0.00 0.00 2.52
2163 2616 7.446106 TCCCTGCAATATTCTACCTTTTCTA 57.554 36.000 0.00 0.00 0.00 2.10
2164 2617 8.045720 TCCCTGCAATATTCTACCTTTTCTAT 57.954 34.615 0.00 0.00 0.00 1.98
2165 2618 8.502738 TCCCTGCAATATTCTACCTTTTCTATT 58.497 33.333 0.00 0.00 0.00 1.73
2166 2619 9.136323 CCCTGCAATATTCTACCTTTTCTATTT 57.864 33.333 0.00 0.00 0.00 1.40
2195 2648 9.159470 CTTCATTCTTTTGAGACTTTTCGTTAC 57.841 33.333 0.00 0.00 0.00 2.50
2197 2650 8.335356 TCATTCTTTTGAGACTTTTCGTTACAG 58.665 33.333 0.00 0.00 0.00 2.74
2199 2652 7.230466 TCTTTTGAGACTTTTCGTTACAGTC 57.770 36.000 0.00 0.00 37.76 3.51
2202 2655 8.706492 TTTTGAGACTTTTCGTTACAGTCTTA 57.294 30.769 4.89 0.00 45.93 2.10
2205 2658 8.158169 TGAGACTTTTCGTTACAGTCTTACTA 57.842 34.615 4.89 0.00 45.93 1.82
2210 2663 9.978044 ACTTTTCGTTACAGTCTTACTAAATCT 57.022 29.630 0.00 0.00 0.00 2.40
2212 2665 9.970395 TTTTCGTTACAGTCTTACTAAATCTCA 57.030 29.630 0.00 0.00 0.00 3.27
2213 2666 9.970395 TTTCGTTACAGTCTTACTAAATCTCAA 57.030 29.630 0.00 0.00 0.00 3.02
2214 2667 8.961294 TCGTTACAGTCTTACTAAATCTCAAC 57.039 34.615 0.00 0.00 0.00 3.18
2215 2668 8.025445 TCGTTACAGTCTTACTAAATCTCAACC 58.975 37.037 0.00 0.00 0.00 3.77
2216 2669 7.008086 CGTTACAGTCTTACTAAATCTCAACCG 59.992 40.741 0.00 0.00 0.00 4.44
2217 2670 6.585695 ACAGTCTTACTAAATCTCAACCGA 57.414 37.500 0.00 0.00 0.00 4.69
2218 2671 6.388278 ACAGTCTTACTAAATCTCAACCGAC 58.612 40.000 0.00 0.00 0.00 4.79
2219 2672 6.208994 ACAGTCTTACTAAATCTCAACCGACT 59.791 38.462 0.00 0.00 0.00 4.18
2220 2673 7.392673 ACAGTCTTACTAAATCTCAACCGACTA 59.607 37.037 0.00 0.00 0.00 2.59
2221 2674 8.242053 CAGTCTTACTAAATCTCAACCGACTAA 58.758 37.037 0.00 0.00 0.00 2.24
2222 2675 8.460428 AGTCTTACTAAATCTCAACCGACTAAG 58.540 37.037 0.00 0.00 0.00 2.18
2223 2676 8.457261 GTCTTACTAAATCTCAACCGACTAAGA 58.543 37.037 0.00 0.00 0.00 2.10
2224 2677 8.457261 TCTTACTAAATCTCAACCGACTAAGAC 58.543 37.037 0.00 0.00 0.00 3.01
2225 2678 6.837471 ACTAAATCTCAACCGACTAAGACT 57.163 37.500 0.00 0.00 0.00 3.24
2226 2679 7.229581 ACTAAATCTCAACCGACTAAGACTT 57.770 36.000 0.00 0.00 0.00 3.01
2227 2680 7.091443 ACTAAATCTCAACCGACTAAGACTTG 58.909 38.462 0.00 0.00 0.00 3.16
2228 2681 3.936372 TCTCAACCGACTAAGACTTGG 57.064 47.619 0.00 0.00 0.00 3.61
2229 2682 3.228453 TCTCAACCGACTAAGACTTGGT 58.772 45.455 3.54 3.54 33.45 3.67
2230 2683 3.640029 TCTCAACCGACTAAGACTTGGTT 59.360 43.478 5.60 3.93 43.41 3.67
2231 2684 4.828939 TCTCAACCGACTAAGACTTGGTTA 59.171 41.667 5.60 0.00 40.80 2.85
2232 2685 5.479375 TCTCAACCGACTAAGACTTGGTTAT 59.521 40.000 5.60 0.00 40.80 1.89
2233 2686 5.475719 TCAACCGACTAAGACTTGGTTATG 58.524 41.667 5.60 3.78 40.80 1.90
2234 2687 5.011329 TCAACCGACTAAGACTTGGTTATGT 59.989 40.000 5.60 1.49 40.80 2.29
2235 2688 5.069501 ACCGACTAAGACTTGGTTATGTC 57.930 43.478 5.60 0.83 0.00 3.06
2236 2689 4.771054 ACCGACTAAGACTTGGTTATGTCT 59.229 41.667 5.60 0.00 41.52 3.41
2237 2690 5.105837 ACCGACTAAGACTTGGTTATGTCTC 60.106 44.000 5.60 0.00 39.58 3.36
2238 2691 5.105877 CCGACTAAGACTTGGTTATGTCTCA 60.106 44.000 5.60 0.00 39.58 3.27
2239 2692 6.387465 CGACTAAGACTTGGTTATGTCTCAA 58.613 40.000 5.60 0.00 39.58 3.02
2240 2693 7.036220 CGACTAAGACTTGGTTATGTCTCAAT 58.964 38.462 5.60 0.00 39.58 2.57
2241 2694 7.221067 CGACTAAGACTTGGTTATGTCTCAATC 59.779 40.741 5.60 0.00 39.58 2.67
2242 2695 7.036220 ACTAAGACTTGGTTATGTCTCAATCG 58.964 38.462 0.00 0.00 39.58 3.34
2243 2696 5.661056 AGACTTGGTTATGTCTCAATCGA 57.339 39.130 0.00 0.00 36.84 3.59
2244 2697 6.227298 AGACTTGGTTATGTCTCAATCGAT 57.773 37.500 0.00 0.00 36.84 3.59
2245 2698 7.348080 AGACTTGGTTATGTCTCAATCGATA 57.652 36.000 0.00 0.00 36.84 2.92
2246 2699 7.957002 AGACTTGGTTATGTCTCAATCGATAT 58.043 34.615 0.00 0.00 36.84 1.63
2247 2700 8.424918 AGACTTGGTTATGTCTCAATCGATATT 58.575 33.333 0.00 0.00 36.84 1.28
2248 2701 9.692749 GACTTGGTTATGTCTCAATCGATATTA 57.307 33.333 0.00 0.00 0.00 0.98
2278 2731 6.915544 TGAGATCTTACATCAAATCTGTGC 57.084 37.500 0.00 0.00 0.00 4.57
2279 2732 6.408869 TGAGATCTTACATCAAATCTGTGCA 58.591 36.000 0.00 0.00 0.00 4.57
2280 2733 6.880529 TGAGATCTTACATCAAATCTGTGCAA 59.119 34.615 0.00 0.00 0.00 4.08
2281 2734 7.391275 TGAGATCTTACATCAAATCTGTGCAAA 59.609 33.333 0.00 0.00 0.00 3.68
2282 2735 8.114331 AGATCTTACATCAAATCTGTGCAAAA 57.886 30.769 0.00 0.00 0.00 2.44
2283 2736 8.746530 AGATCTTACATCAAATCTGTGCAAAAT 58.253 29.630 0.00 0.00 0.00 1.82
2316 2769 8.740123 TTAAATTTGTGTTTAGGTCTCAGTCA 57.260 30.769 0.00 0.00 0.00 3.41
2317 2770 7.639113 AAATTTGTGTTTAGGTCTCAGTCAA 57.361 32.000 0.00 0.00 0.00 3.18
2318 2771 6.619801 ATTTGTGTTTAGGTCTCAGTCAAC 57.380 37.500 0.00 0.00 0.00 3.18
2319 2772 5.353394 TTGTGTTTAGGTCTCAGTCAACT 57.647 39.130 0.00 0.00 0.00 3.16
2320 2773 4.693283 TGTGTTTAGGTCTCAGTCAACTG 58.307 43.478 3.69 3.69 45.08 3.16
2333 2786 5.914085 CAGTCAACTGAGTCTTAACCAAG 57.086 43.478 4.05 0.00 46.59 3.61
2334 2787 5.360591 CAGTCAACTGAGTCTTAACCAAGT 58.639 41.667 4.05 0.00 46.59 3.16
2335 2788 5.463724 CAGTCAACTGAGTCTTAACCAAGTC 59.536 44.000 4.05 0.00 46.59 3.01
2336 2789 5.364157 AGTCAACTGAGTCTTAACCAAGTCT 59.636 40.000 0.00 0.00 33.56 3.24
2337 2790 5.692654 GTCAACTGAGTCTTAACCAAGTCTC 59.307 44.000 5.15 5.15 43.27 3.36
2342 2795 6.419484 TGAGTCTTAACCAAGTCTCAATCA 57.581 37.500 10.51 0.00 46.80 2.57
2343 2796 6.826668 TGAGTCTTAACCAAGTCTCAATCAA 58.173 36.000 10.51 0.00 46.80 2.57
2344 2797 6.931281 TGAGTCTTAACCAAGTCTCAATCAAG 59.069 38.462 10.51 0.00 46.80 3.02
2345 2798 6.234177 AGTCTTAACCAAGTCTCAATCAAGG 58.766 40.000 0.00 0.00 33.20 3.61
2346 2799 6.043243 AGTCTTAACCAAGTCTCAATCAAGGA 59.957 38.462 0.00 0.00 33.20 3.36
2347 2800 6.710744 GTCTTAACCAAGTCTCAATCAAGGAA 59.289 38.462 0.00 0.00 33.20 3.36
2348 2801 7.228706 GTCTTAACCAAGTCTCAATCAAGGAAA 59.771 37.037 0.00 0.00 33.20 3.13
2349 2802 7.777910 TCTTAACCAAGTCTCAATCAAGGAAAA 59.222 33.333 0.00 0.00 33.20 2.29
2350 2803 6.790232 AACCAAGTCTCAATCAAGGAAAAA 57.210 33.333 0.00 0.00 0.00 1.94
2386 2839 8.396390 AGATAAATATTGCATGAATCTCGATGC 58.604 33.333 0.00 0.00 44.42 3.91
2392 2845 4.485024 GCATGAATCTCGATGCAAGATT 57.515 40.909 11.11 11.11 44.21 2.40
2393 2846 5.602458 GCATGAATCTCGATGCAAGATTA 57.398 39.130 11.24 2.94 42.17 1.75
2394 2847 5.993891 GCATGAATCTCGATGCAAGATTAA 58.006 37.500 11.24 5.76 42.17 1.40
2395 2848 6.432936 GCATGAATCTCGATGCAAGATTAAA 58.567 36.000 11.24 4.99 42.17 1.52
2396 2849 7.082602 GCATGAATCTCGATGCAAGATTAAAT 58.917 34.615 11.24 6.73 42.17 1.40
2397 2850 7.060748 GCATGAATCTCGATGCAAGATTAAATG 59.939 37.037 19.20 19.20 42.17 2.32
2398 2851 7.790823 TGAATCTCGATGCAAGATTAAATGA 57.209 32.000 11.24 0.00 42.17 2.57
2399 2852 8.212317 TGAATCTCGATGCAAGATTAAATGAA 57.788 30.769 11.24 0.00 42.17 2.57
2400 2853 8.843262 TGAATCTCGATGCAAGATTAAATGAAT 58.157 29.630 11.24 0.00 42.17 2.57
2419 2872 9.823647 AAATGAATATAACATCGACTGAGACTT 57.176 29.630 0.00 0.00 0.00 3.01
2427 2880 9.737427 ATAACATCGACTGAGACTTAATTAGTG 57.263 33.333 0.00 0.00 37.17 2.74
2428 2881 7.392494 ACATCGACTGAGACTTAATTAGTGA 57.608 36.000 0.00 0.00 37.17 3.41
2429 2882 7.827701 ACATCGACTGAGACTTAATTAGTGAA 58.172 34.615 0.00 0.00 37.17 3.18
2430 2883 7.971168 ACATCGACTGAGACTTAATTAGTGAAG 59.029 37.037 0.00 0.00 37.17 3.02
2431 2884 7.450124 TCGACTGAGACTTAATTAGTGAAGT 57.550 36.000 0.00 0.00 37.17 3.01
2439 2892 7.728580 GACTTAATTAGTGAAGTCTGAGTCG 57.271 40.000 7.99 0.00 45.34 4.18
2440 2893 7.450124 ACTTAATTAGTGAAGTCTGAGTCGA 57.550 36.000 0.00 0.00 35.19 4.20
2441 2894 7.306953 ACTTAATTAGTGAAGTCTGAGTCGAC 58.693 38.462 7.70 7.70 35.19 4.20
2442 2895 5.707242 AATTAGTGAAGTCTGAGTCGACA 57.293 39.130 19.50 0.00 36.38 4.35
2443 2896 4.750952 TTAGTGAAGTCTGAGTCGACAG 57.249 45.455 19.50 7.56 36.38 3.51
2444 2897 2.852449 AGTGAAGTCTGAGTCGACAGA 58.148 47.619 19.50 10.09 43.39 3.41
2445 2898 2.811431 AGTGAAGTCTGAGTCGACAGAG 59.189 50.000 19.50 12.66 45.67 3.35
2446 2899 2.095466 GTGAAGTCTGAGTCGACAGAGG 60.095 54.545 19.50 4.98 45.67 3.69
2447 2900 0.885196 AAGTCTGAGTCGACAGAGGC 59.115 55.000 19.50 13.96 45.67 4.70
2448 2901 0.037590 AGTCTGAGTCGACAGAGGCT 59.962 55.000 19.50 16.07 45.67 4.58
2449 2902 0.885196 GTCTGAGTCGACAGAGGCTT 59.115 55.000 19.50 0.00 45.67 4.35
2450 2903 2.085320 GTCTGAGTCGACAGAGGCTTA 58.915 52.381 19.50 0.00 45.67 3.09
2451 2904 2.096819 GTCTGAGTCGACAGAGGCTTAG 59.903 54.545 19.50 1.95 45.67 2.18
2452 2905 2.027100 TCTGAGTCGACAGAGGCTTAGA 60.027 50.000 19.50 4.50 41.21 2.10
2453 2906 2.750166 CTGAGTCGACAGAGGCTTAGAA 59.250 50.000 19.50 0.00 39.94 2.10
2454 2907 2.488545 TGAGTCGACAGAGGCTTAGAAC 59.511 50.000 19.50 0.00 0.00 3.01
2455 2908 2.488545 GAGTCGACAGAGGCTTAGAACA 59.511 50.000 19.50 0.00 0.00 3.18
2456 2909 2.891580 AGTCGACAGAGGCTTAGAACAA 59.108 45.455 19.50 0.00 0.00 2.83
2457 2910 2.987821 GTCGACAGAGGCTTAGAACAAC 59.012 50.000 11.55 0.00 0.00 3.32
2458 2911 2.891580 TCGACAGAGGCTTAGAACAACT 59.108 45.455 0.00 0.00 0.00 3.16
2459 2912 4.077108 TCGACAGAGGCTTAGAACAACTA 58.923 43.478 0.00 0.00 0.00 2.24
2460 2913 4.705507 TCGACAGAGGCTTAGAACAACTAT 59.294 41.667 0.00 0.00 0.00 2.12
2461 2914 5.185249 TCGACAGAGGCTTAGAACAACTATT 59.815 40.000 0.00 0.00 0.00 1.73
2462 2915 6.376299 TCGACAGAGGCTTAGAACAACTATTA 59.624 38.462 0.00 0.00 0.00 0.98
2463 2916 7.068348 TCGACAGAGGCTTAGAACAACTATTAT 59.932 37.037 0.00 0.00 0.00 1.28
2464 2917 7.707035 CGACAGAGGCTTAGAACAACTATTATT 59.293 37.037 0.00 0.00 0.00 1.40
2465 2918 9.384764 GACAGAGGCTTAGAACAACTATTATTT 57.615 33.333 0.00 0.00 0.00 1.40
2466 2919 9.740710 ACAGAGGCTTAGAACAACTATTATTTT 57.259 29.630 0.00 0.00 0.00 1.82
2468 2921 9.959721 AGAGGCTTAGAACAACTATTATTTTCA 57.040 29.630 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.864686 CTTTCATCGGTGGCGGCG 61.865 66.667 0.51 0.51 0.00 6.46
105 106 6.573712 AGATTGGATCTAGAAAAGCTCCTT 57.426 37.500 10.06 0.00 40.59 3.36
135 136 4.782019 TCACAACTGAAGCAAAAACTGT 57.218 36.364 0.00 0.00 0.00 3.55
167 168 3.110178 GAAGCTGTACCGCGCGTT 61.110 61.111 29.95 18.87 34.40 4.84
170 171 3.248171 CTCGAAGCTGTACCGCGC 61.248 66.667 0.00 0.00 34.40 6.86
189 190 1.552337 CTCCTACATGCGCCTCCATAT 59.448 52.381 4.18 0.00 0.00 1.78
228 229 1.202568 CGCGCCATCGATGTTCATC 59.797 57.895 23.27 7.34 38.10 2.92
271 272 2.594303 CCCACCTTGCAGCGTTCA 60.594 61.111 0.00 0.00 0.00 3.18
315 316 2.797156 CTCGCCATGTAATCTTCTTCCG 59.203 50.000 0.00 0.00 0.00 4.30
353 354 4.083110 AGTTTGTACTACACGTATGCGTCT 60.083 41.667 5.66 0.00 40.36 4.18
360 361 2.412716 CGGCGAGTTTGTACTACACGTA 60.413 50.000 0.00 0.00 33.84 3.57
404 405 1.522092 GTCCTCCATCCGTGATGCA 59.478 57.895 8.01 0.00 38.59 3.96
436 437 1.812686 TTCCTGTTCCTCGGTCCGTG 61.813 60.000 11.88 8.95 0.00 4.94
496 497 2.030562 CGGGCCAGTTCGTTCAGT 59.969 61.111 4.39 0.00 0.00 3.41
506 507 4.473520 ATTCTCCGCACGGGCCAG 62.474 66.667 2.82 1.85 36.38 4.85
517 518 5.049129 CCAGTCAAAACACTTCTCATTCTCC 60.049 44.000 0.00 0.00 0.00 3.71
518 519 5.760253 TCCAGTCAAAACACTTCTCATTCTC 59.240 40.000 0.00 0.00 0.00 2.87
519 520 5.529060 GTCCAGTCAAAACACTTCTCATTCT 59.471 40.000 0.00 0.00 0.00 2.40
525 526 3.545703 CAGGTCCAGTCAAAACACTTCT 58.454 45.455 0.00 0.00 0.00 2.85
536 537 1.303643 CAAAGGCCCAGGTCCAGTC 60.304 63.158 0.00 0.00 0.00 3.51
539 540 1.383799 CATCAAAGGCCCAGGTCCA 59.616 57.895 0.00 0.00 0.00 4.02
540 541 1.380380 CCATCAAAGGCCCAGGTCC 60.380 63.158 0.00 0.00 0.00 4.46
541 542 4.344237 CCATCAAAGGCCCAGGTC 57.656 61.111 0.00 0.00 0.00 3.85
549 550 2.039746 TCCATATACGGGCCATCAAAGG 59.960 50.000 4.39 0.00 0.00 3.11
550 551 3.007940 TCTCCATATACGGGCCATCAAAG 59.992 47.826 4.39 0.00 0.00 2.77
551 552 2.976185 TCTCCATATACGGGCCATCAAA 59.024 45.455 4.39 0.00 0.00 2.69
552 553 2.567169 CTCTCCATATACGGGCCATCAA 59.433 50.000 4.39 0.00 0.00 2.57
553 554 2.179427 CTCTCCATATACGGGCCATCA 58.821 52.381 4.39 0.00 0.00 3.07
554 555 1.482593 CCTCTCCATATACGGGCCATC 59.517 57.143 4.39 0.00 0.00 3.51
555 556 1.573108 CCTCTCCATATACGGGCCAT 58.427 55.000 4.39 0.00 0.00 4.40
556 557 0.544357 CCCTCTCCATATACGGGCCA 60.544 60.000 4.39 0.00 0.00 5.36
557 558 0.252103 TCCCTCTCCATATACGGGCC 60.252 60.000 0.00 0.00 34.84 5.80
558 559 0.896226 GTCCCTCTCCATATACGGGC 59.104 60.000 0.00 0.00 34.84 6.13
559 560 1.174783 CGTCCCTCTCCATATACGGG 58.825 60.000 0.00 0.00 36.21 5.28
560 561 1.174783 CCGTCCCTCTCCATATACGG 58.825 60.000 0.00 0.00 43.20 4.02
561 562 1.174783 CCCGTCCCTCTCCATATACG 58.825 60.000 0.00 0.00 0.00 3.06
562 563 2.448453 CTCCCGTCCCTCTCCATATAC 58.552 57.143 0.00 0.00 0.00 1.47
563 564 1.272536 GCTCCCGTCCCTCTCCATATA 60.273 57.143 0.00 0.00 0.00 0.86
564 565 0.543174 GCTCCCGTCCCTCTCCATAT 60.543 60.000 0.00 0.00 0.00 1.78
565 566 1.152525 GCTCCCGTCCCTCTCCATA 60.153 63.158 0.00 0.00 0.00 2.74
566 567 2.444895 GCTCCCGTCCCTCTCCAT 60.445 66.667 0.00 0.00 0.00 3.41
567 568 3.663815 GAGCTCCCGTCCCTCTCCA 62.664 68.421 0.87 0.00 0.00 3.86
568 569 2.835895 GAGCTCCCGTCCCTCTCC 60.836 72.222 0.87 0.00 0.00 3.71
569 570 3.213402 CGAGCTCCCGTCCCTCTC 61.213 72.222 8.47 0.00 0.00 3.20
574 575 2.516460 TAGAGCGAGCTCCCGTCC 60.516 66.667 20.15 0.00 43.70 4.79
575 576 1.448922 ATGTAGAGCGAGCTCCCGTC 61.449 60.000 20.15 9.65 43.70 4.79
576 577 0.179026 TATGTAGAGCGAGCTCCCGT 60.179 55.000 20.15 14.67 43.70 5.28
577 578 0.519519 CTATGTAGAGCGAGCTCCCG 59.480 60.000 20.15 0.00 43.70 5.14
578 579 0.242555 GCTATGTAGAGCGAGCTCCC 59.757 60.000 20.15 12.35 43.70 4.30
579 580 0.955178 TGCTATGTAGAGCGAGCTCC 59.045 55.000 20.15 7.79 45.99 4.70
580 581 1.665735 GCTGCTATGTAGAGCGAGCTC 60.666 57.143 16.63 16.63 45.99 4.09
581 582 0.313672 GCTGCTATGTAGAGCGAGCT 59.686 55.000 0.00 0.00 45.99 4.09
582 583 2.807878 GCTGCTATGTAGAGCGAGC 58.192 57.895 0.00 7.01 45.99 5.03
586 587 1.666234 GGCCGCTGCTATGTAGAGC 60.666 63.158 0.00 0.00 43.16 4.09
587 588 1.005630 GGGCCGCTGCTATGTAGAG 60.006 63.158 0.00 0.00 37.74 2.43
588 589 1.760480 TGGGCCGCTGCTATGTAGA 60.760 57.895 0.00 0.00 37.74 2.59
589 590 1.595382 GTGGGCCGCTGCTATGTAG 60.595 63.158 10.52 0.00 37.74 2.74
590 591 2.504032 GTGGGCCGCTGCTATGTA 59.496 61.111 10.52 0.00 37.74 2.29
591 592 4.838152 CGTGGGCCGCTGCTATGT 62.838 66.667 16.24 0.00 37.74 2.29
592 593 4.529219 TCGTGGGCCGCTGCTATG 62.529 66.667 16.24 0.00 37.74 2.23
593 594 4.227134 CTCGTGGGCCGCTGCTAT 62.227 66.667 16.24 0.00 37.74 2.97
606 607 2.573869 CTCCACGCACCATCTCGT 59.426 61.111 0.00 0.00 39.79 4.18
607 608 2.887568 GCTCCACGCACCATCTCG 60.888 66.667 0.00 0.00 38.92 4.04
608 609 2.887568 CGCTCCACGCACCATCTC 60.888 66.667 0.00 0.00 39.08 2.75
618 619 3.112709 GTCGTTCAGGCGCTCCAC 61.113 66.667 7.64 0.00 33.74 4.02
619 620 4.717629 CGTCGTTCAGGCGCTCCA 62.718 66.667 7.64 0.00 42.71 3.86
626 627 4.430765 CCCGGGTCGTCGTTCAGG 62.431 72.222 14.18 0.00 0.00 3.86
627 628 2.814183 CTTCCCGGGTCGTCGTTCAG 62.814 65.000 22.86 0.00 0.00 3.02
628 629 2.911509 TTCCCGGGTCGTCGTTCA 60.912 61.111 22.86 0.00 0.00 3.18
629 630 2.126189 CTTCCCGGGTCGTCGTTC 60.126 66.667 22.86 0.00 0.00 3.95
630 631 2.598394 TCTTCCCGGGTCGTCGTT 60.598 61.111 22.86 0.00 0.00 3.85
631 632 3.368571 GTCTTCCCGGGTCGTCGT 61.369 66.667 22.86 0.00 0.00 4.34
632 633 3.060615 AGTCTTCCCGGGTCGTCG 61.061 66.667 22.86 5.65 0.00 5.12
633 634 2.572284 CAGTCTTCCCGGGTCGTC 59.428 66.667 22.86 10.46 0.00 4.20
634 635 2.995574 CCAGTCTTCCCGGGTCGT 60.996 66.667 22.86 0.00 0.00 4.34
635 636 3.771160 CCCAGTCTTCCCGGGTCG 61.771 72.222 22.86 13.05 35.03 4.79
636 637 3.400054 CCCCAGTCTTCCCGGGTC 61.400 72.222 22.86 9.88 38.40 4.46
639 640 3.717294 CACCCCCAGTCTTCCCGG 61.717 72.222 0.00 0.00 0.00 5.73
640 641 1.972660 GATCACCCCCAGTCTTCCCG 61.973 65.000 0.00 0.00 0.00 5.14
641 642 0.621862 AGATCACCCCCAGTCTTCCC 60.622 60.000 0.00 0.00 0.00 3.97
642 643 1.763545 GTAGATCACCCCCAGTCTTCC 59.236 57.143 0.00 0.00 0.00 3.46
643 644 2.467880 TGTAGATCACCCCCAGTCTTC 58.532 52.381 0.00 0.00 0.00 2.87
644 645 2.642171 TGTAGATCACCCCCAGTCTT 57.358 50.000 0.00 0.00 0.00 3.01
645 646 2.683768 GATGTAGATCACCCCCAGTCT 58.316 52.381 0.00 0.00 0.00 3.24
646 647 1.341531 CGATGTAGATCACCCCCAGTC 59.658 57.143 0.29 0.00 0.00 3.51
647 648 1.343075 ACGATGTAGATCACCCCCAGT 60.343 52.381 0.29 0.00 0.00 4.00
648 649 1.414158 ACGATGTAGATCACCCCCAG 58.586 55.000 0.29 0.00 0.00 4.45
649 650 2.313317 GTACGATGTAGATCACCCCCA 58.687 52.381 0.29 0.00 0.00 4.96
650 651 1.268899 CGTACGATGTAGATCACCCCC 59.731 57.143 10.44 0.00 0.00 5.40
651 652 1.335689 GCGTACGATGTAGATCACCCC 60.336 57.143 21.65 0.00 0.00 4.95
652 653 1.662309 CGCGTACGATGTAGATCACCC 60.662 57.143 21.65 0.00 43.93 4.61
653 654 1.262417 TCGCGTACGATGTAGATCACC 59.738 52.381 21.65 0.00 45.12 4.02
654 655 2.657960 TCGCGTACGATGTAGATCAC 57.342 50.000 21.65 0.00 45.12 3.06
665 666 1.937846 CCGGATCACTTCGCGTACG 60.938 63.158 11.84 11.84 42.01 3.67
666 667 2.228914 GCCGGATCACTTCGCGTAC 61.229 63.158 5.05 0.00 0.00 3.67
667 668 2.103538 GCCGGATCACTTCGCGTA 59.896 61.111 5.05 0.00 0.00 4.42
671 672 4.514577 AGCCGCCGGATCACTTCG 62.515 66.667 7.68 0.00 0.00 3.79
672 673 2.586357 GAGCCGCCGGATCACTTC 60.586 66.667 17.84 0.00 38.12 3.01
673 674 3.077556 AGAGCCGCCGGATCACTT 61.078 61.111 24.76 0.00 41.08 3.16
674 675 3.842923 CAGAGCCGCCGGATCACT 61.843 66.667 24.76 1.74 41.08 3.41
675 676 3.781770 CTCAGAGCCGCCGGATCAC 62.782 68.421 24.76 0.00 41.08 3.06
676 677 3.531207 CTCAGAGCCGCCGGATCA 61.531 66.667 24.76 2.25 41.08 2.92
677 678 4.292178 CCTCAGAGCCGCCGGATC 62.292 72.222 14.68 14.68 38.56 3.36
682 683 3.612247 TTTGAGCCTCAGAGCCGCC 62.612 63.158 0.00 0.00 0.00 6.13
683 684 1.672356 TTTTGAGCCTCAGAGCCGC 60.672 57.895 0.00 0.00 0.00 6.53
684 685 0.603707 TGTTTTGAGCCTCAGAGCCG 60.604 55.000 0.00 0.00 0.00 5.52
685 686 0.877743 GTGTTTTGAGCCTCAGAGCC 59.122 55.000 0.00 0.00 0.00 4.70
686 687 0.877743 GGTGTTTTGAGCCTCAGAGC 59.122 55.000 0.00 0.00 0.00 4.09
687 688 1.151668 CGGTGTTTTGAGCCTCAGAG 58.848 55.000 0.00 0.00 0.00 3.35
688 689 0.468226 ACGGTGTTTTGAGCCTCAGA 59.532 50.000 0.00 0.00 0.00 3.27
689 690 0.588252 CACGGTGTTTTGAGCCTCAG 59.412 55.000 0.00 0.00 0.00 3.35
690 691 0.817634 CCACGGTGTTTTGAGCCTCA 60.818 55.000 7.45 0.00 0.00 3.86
691 692 0.534203 TCCACGGTGTTTTGAGCCTC 60.534 55.000 7.45 0.00 0.00 4.70
692 693 0.106918 TTCCACGGTGTTTTGAGCCT 60.107 50.000 7.45 0.00 0.00 4.58
693 694 0.310854 CTTCCACGGTGTTTTGAGCC 59.689 55.000 7.45 0.00 0.00 4.70
694 695 0.317854 GCTTCCACGGTGTTTTGAGC 60.318 55.000 7.45 5.26 0.00 4.26
695 696 1.264288 GAGCTTCCACGGTGTTTTGAG 59.736 52.381 7.45 0.00 0.00 3.02
696 697 1.305201 GAGCTTCCACGGTGTTTTGA 58.695 50.000 7.45 0.00 0.00 2.69
697 698 0.310854 GGAGCTTCCACGGTGTTTTG 59.689 55.000 7.45 0.00 36.28 2.44
698 699 1.164041 CGGAGCTTCCACGGTGTTTT 61.164 55.000 7.45 0.00 35.91 2.43
699 700 1.597027 CGGAGCTTCCACGGTGTTT 60.597 57.895 7.45 0.00 35.91 2.83
700 701 2.030562 CGGAGCTTCCACGGTGTT 59.969 61.111 7.45 0.00 35.91 3.32
701 702 3.231736 ACGGAGCTTCCACGGTGT 61.232 61.111 7.45 0.00 35.91 4.16
702 703 2.738521 CACGGAGCTTCCACGGTG 60.739 66.667 0.00 0.00 35.91 4.94
703 704 4.003788 CCACGGAGCTTCCACGGT 62.004 66.667 0.00 0.00 35.91 4.83
704 705 2.558554 CTACCACGGAGCTTCCACGG 62.559 65.000 0.00 0.00 35.91 4.94
705 706 1.153823 CTACCACGGAGCTTCCACG 60.154 63.158 0.00 0.00 35.91 4.94
706 707 1.448013 GCTACCACGGAGCTTCCAC 60.448 63.158 0.00 0.00 35.91 4.02
707 708 2.656069 GGCTACCACGGAGCTTCCA 61.656 63.158 0.00 0.00 39.98 3.53
708 709 2.187163 GGCTACCACGGAGCTTCC 59.813 66.667 0.00 0.00 39.98 3.46
709 710 2.187163 GGGCTACCACGGAGCTTC 59.813 66.667 0.00 0.00 39.98 3.86
710 711 2.284699 AGGGCTACCACGGAGCTT 60.285 61.111 0.00 0.00 39.98 3.74
711 712 3.077556 CAGGGCTACCACGGAGCT 61.078 66.667 0.00 0.00 39.98 4.09
712 713 1.610554 TAACAGGGCTACCACGGAGC 61.611 60.000 0.00 0.00 40.13 4.70
713 714 1.120530 ATAACAGGGCTACCACGGAG 58.879 55.000 0.00 0.00 40.13 4.63
714 715 2.034124 GTATAACAGGGCTACCACGGA 58.966 52.381 0.00 0.00 40.13 4.69
715 716 2.037144 AGTATAACAGGGCTACCACGG 58.963 52.381 0.00 0.00 40.13 4.94
716 717 2.429610 ACAGTATAACAGGGCTACCACG 59.570 50.000 0.00 0.00 40.13 4.94
717 718 4.482952 AACAGTATAACAGGGCTACCAC 57.517 45.455 0.00 0.00 40.13 4.16
718 719 4.781087 AGAAACAGTATAACAGGGCTACCA 59.219 41.667 0.00 0.00 40.13 3.25
719 720 5.105064 TGAGAAACAGTATAACAGGGCTACC 60.105 44.000 0.00 0.00 0.00 3.18
720 721 5.974108 TGAGAAACAGTATAACAGGGCTAC 58.026 41.667 0.00 0.00 0.00 3.58
721 722 6.614694 TTGAGAAACAGTATAACAGGGCTA 57.385 37.500 0.00 0.00 0.00 3.93
722 723 5.499004 TTGAGAAACAGTATAACAGGGCT 57.501 39.130 0.00 0.00 0.00 5.19
723 724 6.374333 TGAATTGAGAAACAGTATAACAGGGC 59.626 38.462 0.00 0.00 0.00 5.19
724 725 7.390440 TGTGAATTGAGAAACAGTATAACAGGG 59.610 37.037 0.00 0.00 0.00 4.45
725 726 8.322906 TGTGAATTGAGAAACAGTATAACAGG 57.677 34.615 0.00 0.00 0.00 4.00
726 727 8.446273 CCTGTGAATTGAGAAACAGTATAACAG 58.554 37.037 0.00 0.00 38.68 3.16
727 728 7.094805 GCCTGTGAATTGAGAAACAGTATAACA 60.095 37.037 0.00 0.00 38.68 2.41
728 729 7.244192 GCCTGTGAATTGAGAAACAGTATAAC 58.756 38.462 0.00 0.00 38.68 1.89
729 730 6.374333 GGCCTGTGAATTGAGAAACAGTATAA 59.626 38.462 0.00 0.00 38.68 0.98
730 731 5.880332 GGCCTGTGAATTGAGAAACAGTATA 59.120 40.000 0.00 0.00 38.68 1.47
731 732 4.702131 GGCCTGTGAATTGAGAAACAGTAT 59.298 41.667 0.00 0.00 38.68 2.12
732 733 4.072131 GGCCTGTGAATTGAGAAACAGTA 58.928 43.478 0.00 0.00 38.68 2.74
733 734 2.887152 GGCCTGTGAATTGAGAAACAGT 59.113 45.455 0.00 0.00 38.68 3.55
734 735 2.095567 CGGCCTGTGAATTGAGAAACAG 60.096 50.000 0.00 0.00 39.78 3.16
735 736 1.879380 CGGCCTGTGAATTGAGAAACA 59.121 47.619 0.00 0.00 0.00 2.83
736 737 2.151202 TCGGCCTGTGAATTGAGAAAC 58.849 47.619 0.00 0.00 0.00 2.78
737 738 2.559698 TCGGCCTGTGAATTGAGAAA 57.440 45.000 0.00 0.00 0.00 2.52
738 739 2.559698 TTCGGCCTGTGAATTGAGAA 57.440 45.000 0.00 0.00 0.00 2.87
739 740 2.787473 ATTCGGCCTGTGAATTGAGA 57.213 45.000 0.00 0.00 32.25 3.27
740 741 4.024556 GTCATATTCGGCCTGTGAATTGAG 60.025 45.833 9.30 2.05 37.28 3.02
741 742 3.876914 GTCATATTCGGCCTGTGAATTGA 59.123 43.478 9.30 9.75 37.28 2.57
742 743 3.003689 GGTCATATTCGGCCTGTGAATTG 59.996 47.826 9.30 8.07 37.28 2.32
743 744 3.214328 GGTCATATTCGGCCTGTGAATT 58.786 45.455 9.30 0.00 37.28 2.17
744 745 2.172505 TGGTCATATTCGGCCTGTGAAT 59.827 45.455 0.00 5.33 39.32 2.57
745 746 1.557371 TGGTCATATTCGGCCTGTGAA 59.443 47.619 0.00 0.00 0.00 3.18
746 747 1.134521 GTGGTCATATTCGGCCTGTGA 60.135 52.381 0.00 0.00 0.00 3.58
747 748 1.299541 GTGGTCATATTCGGCCTGTG 58.700 55.000 0.00 0.00 0.00 3.66
748 749 0.180406 GGTGGTCATATTCGGCCTGT 59.820 55.000 0.00 0.00 0.00 4.00
749 750 0.535102 GGGTGGTCATATTCGGCCTG 60.535 60.000 0.00 0.00 0.00 4.85
750 751 1.705997 GGGGTGGTCATATTCGGCCT 61.706 60.000 0.00 0.00 0.00 5.19
751 752 1.228154 GGGGTGGTCATATTCGGCC 60.228 63.158 0.00 0.00 0.00 6.13
760 761 2.842801 CACATGTGGGGGTGGTCA 59.157 61.111 18.51 0.00 0.00 4.02
808 809 1.804326 CGTCGTTTCCGCGGAGAAT 60.804 57.895 29.20 0.00 32.58 2.40
842 843 3.667087 GCATTTCTGCGTGGTCCA 58.333 55.556 0.00 0.00 38.92 4.02
872 873 2.358247 ATCGACAAGGGCGCGTTT 60.358 55.556 8.43 0.00 0.00 3.60
882 883 0.319211 AAACGCAGACCGATCGACAA 60.319 50.000 18.66 0.00 41.02 3.18
887 888 0.997196 GGTACAAACGCAGACCGATC 59.003 55.000 0.00 0.00 41.02 3.69
888 889 0.606604 AGGTACAAACGCAGACCGAT 59.393 50.000 0.00 0.00 41.02 4.18
891 892 1.272769 AGAGAGGTACAAACGCAGACC 59.727 52.381 0.00 0.00 0.00 3.85
892 893 2.329379 CAGAGAGGTACAAACGCAGAC 58.671 52.381 0.00 0.00 0.00 3.51
902 903 1.001158 GCGATGTAGCCAGAGAGGTAC 60.001 57.143 0.00 0.00 40.61 3.34
924 925 4.500545 GCACACACTCTCTTTCTCTCTCAA 60.501 45.833 0.00 0.00 0.00 3.02
932 933 1.230324 GTGGGCACACACTCTCTTTC 58.770 55.000 15.95 0.00 46.90 2.62
1307 1333 3.556298 TTCTTTTCCCCGGACGCCC 62.556 63.158 0.73 0.00 0.00 6.13
1320 1644 1.531602 GGGCCACTGCACCTTCTTT 60.532 57.895 4.39 0.00 40.13 2.52
1350 1674 3.044059 GAAGCAGCACGCCATGGTC 62.044 63.158 14.67 4.79 44.04 4.02
1373 1821 2.202743 CGCCGAGATTCCTTGCGA 60.203 61.111 5.64 0.00 42.63 5.10
1437 1885 1.445095 CTGGGGAATCCTGAGCGAG 59.555 63.158 0.00 0.00 36.68 5.03
1458 1906 8.958060 AGTTATTCTCCACTATGATTAGCCTA 57.042 34.615 0.00 0.00 0.00 3.93
1517 1965 8.562949 ACACTACCCACTATGAAGGTAATAAT 57.437 34.615 0.00 0.00 35.76 1.28
1521 1969 5.335261 TGACACTACCCACTATGAAGGTAA 58.665 41.667 0.00 0.00 35.76 2.85
1527 1975 6.265422 CACATCTATGACACTACCCACTATGA 59.735 42.308 0.00 0.00 0.00 2.15
1528 1976 6.450545 CACATCTATGACACTACCCACTATG 58.549 44.000 0.00 0.00 0.00 2.23
1535 1983 6.216801 TGTTACCACATCTATGACACTACC 57.783 41.667 0.00 0.00 0.00 3.18
1536 1984 8.630917 ACTATGTTACCACATCTATGACACTAC 58.369 37.037 0.00 0.00 43.06 2.73
1541 1989 8.813643 GGTAACTATGTTACCACATCTATGAC 57.186 38.462 25.78 3.29 43.06 3.06
1582 2030 9.151471 GCGCTTTCCAATATATAATGAGTCTAA 57.849 33.333 0.00 0.00 0.00 2.10
1583 2031 8.531982 AGCGCTTTCCAATATATAATGAGTCTA 58.468 33.333 2.64 0.00 0.00 2.59
1585 2033 7.602517 AGCGCTTTCCAATATATAATGAGTC 57.397 36.000 2.64 0.00 0.00 3.36
1586 2034 9.102757 CATAGCGCTTTCCAATATATAATGAGT 57.897 33.333 18.68 0.00 0.00 3.41
1587 2035 9.102757 ACATAGCGCTTTCCAATATATAATGAG 57.897 33.333 18.68 0.00 0.00 2.90
1588 2036 8.882736 CACATAGCGCTTTCCAATATATAATGA 58.117 33.333 18.68 0.00 0.00 2.57
1589 2037 8.882736 TCACATAGCGCTTTCCAATATATAATG 58.117 33.333 18.68 10.96 0.00 1.90
1590 2038 9.618890 ATCACATAGCGCTTTCCAATATATAAT 57.381 29.630 18.68 0.00 0.00 1.28
1591 2039 8.882736 CATCACATAGCGCTTTCCAATATATAA 58.117 33.333 18.68 0.00 0.00 0.98
1594 2042 5.643348 CCATCACATAGCGCTTTCCAATATA 59.357 40.000 18.68 0.00 0.00 0.86
1595 2043 4.456911 CCATCACATAGCGCTTTCCAATAT 59.543 41.667 18.68 0.00 0.00 1.28
1596 2044 3.814842 CCATCACATAGCGCTTTCCAATA 59.185 43.478 18.68 0.00 0.00 1.90
1597 2045 2.620115 CCATCACATAGCGCTTTCCAAT 59.380 45.455 18.68 0.00 0.00 3.16
1598 2046 2.016318 CCATCACATAGCGCTTTCCAA 58.984 47.619 18.68 0.00 0.00 3.53
1599 2047 1.065491 ACCATCACATAGCGCTTTCCA 60.065 47.619 18.68 0.00 0.00 3.53
1600 2048 1.668419 ACCATCACATAGCGCTTTCC 58.332 50.000 18.68 0.00 0.00 3.13
1601 2049 3.621268 TGTTACCATCACATAGCGCTTTC 59.379 43.478 18.68 0.00 0.00 2.62
1603 2051 3.260475 TGTTACCATCACATAGCGCTT 57.740 42.857 18.68 0.00 0.00 4.68
1605 2053 5.862924 AATATGTTACCATCACATAGCGC 57.137 39.130 0.00 0.00 39.83 5.92
1606 2054 8.479313 ACATAATATGTTACCATCACATAGCG 57.521 34.615 0.00 0.00 41.63 4.26
1625 2074 9.732130 GGAGAGAGGCAAATAGAATAACATAAT 57.268 33.333 0.00 0.00 0.00 1.28
1626 2075 8.938883 AGGAGAGAGGCAAATAGAATAACATAA 58.061 33.333 0.00 0.00 0.00 1.90
1634 2083 5.965033 AATGAGGAGAGAGGCAAATAGAA 57.035 39.130 0.00 0.00 0.00 2.10
1636 2085 6.825610 AGTTAATGAGGAGAGAGGCAAATAG 58.174 40.000 0.00 0.00 0.00 1.73
1639 2088 6.814954 ATAGTTAATGAGGAGAGAGGCAAA 57.185 37.500 0.00 0.00 0.00 3.68
1640 2089 6.814954 AATAGTTAATGAGGAGAGAGGCAA 57.185 37.500 0.00 0.00 0.00 4.52
1641 2090 6.586344 CAAATAGTTAATGAGGAGAGAGGCA 58.414 40.000 0.00 0.00 0.00 4.75
1642 2091 5.468409 GCAAATAGTTAATGAGGAGAGAGGC 59.532 44.000 0.00 0.00 0.00 4.70
1643 2092 5.994668 GGCAAATAGTTAATGAGGAGAGAGG 59.005 44.000 0.00 0.00 0.00 3.69
1651 2100 6.095300 TGGTGATGTGGCAAATAGTTAATGAG 59.905 38.462 0.00 0.00 0.00 2.90
1654 2103 7.422465 AATGGTGATGTGGCAAATAGTTAAT 57.578 32.000 0.00 0.00 0.00 1.40
1659 2108 6.866480 AGTAAAATGGTGATGTGGCAAATAG 58.134 36.000 0.00 0.00 0.00 1.73
1661 2110 5.743636 AGTAAAATGGTGATGTGGCAAAT 57.256 34.783 0.00 0.00 0.00 2.32
1662 2111 5.543507 AAGTAAAATGGTGATGTGGCAAA 57.456 34.783 0.00 0.00 0.00 3.68
1663 2112 6.210385 ACATAAGTAAAATGGTGATGTGGCAA 59.790 34.615 0.00 0.00 0.00 4.52
1672 2121 6.455360 AGATGCCACATAAGTAAAATGGTG 57.545 37.500 0.00 0.00 32.71 4.17
1674 2123 8.169977 ACATAGATGCCACATAAGTAAAATGG 57.830 34.615 0.00 0.00 0.00 3.16
1681 2130 9.094578 AGATAGTAACATAGATGCCACATAAGT 57.905 33.333 0.00 0.00 0.00 2.24
1684 2133 9.755122 AGTAGATAGTAACATAGATGCCACATA 57.245 33.333 0.00 0.00 0.00 2.29
1686 2135 9.011095 GTAGTAGATAGTAACATAGATGCCACA 57.989 37.037 0.00 0.00 0.00 4.17
1687 2136 8.460428 GGTAGTAGATAGTAACATAGATGCCAC 58.540 40.741 0.00 0.00 0.00 5.01
1688 2137 8.391699 AGGTAGTAGATAGTAACATAGATGCCA 58.608 37.037 0.00 0.00 0.00 4.92
1689 2138 8.810990 AGGTAGTAGATAGTAACATAGATGCC 57.189 38.462 0.00 0.00 0.00 4.40
1690 2139 8.895737 GGAGGTAGTAGATAGTAACATAGATGC 58.104 40.741 0.00 0.00 0.00 3.91
1691 2140 9.100554 CGGAGGTAGTAGATAGTAACATAGATG 57.899 40.741 0.00 0.00 0.00 2.90
1693 2142 8.200024 ACGGAGGTAGTAGATAGTAACATAGA 57.800 38.462 0.00 0.00 0.00 1.98
1694 2143 7.548780 GGACGGAGGTAGTAGATAGTAACATAG 59.451 44.444 0.00 0.00 0.00 2.23
1695 2144 7.390027 GGACGGAGGTAGTAGATAGTAACATA 58.610 42.308 0.00 0.00 0.00 2.29
1696 2145 6.237154 GGACGGAGGTAGTAGATAGTAACAT 58.763 44.000 0.00 0.00 0.00 2.71
1697 2146 5.615289 GGACGGAGGTAGTAGATAGTAACA 58.385 45.833 0.00 0.00 0.00 2.41
1698 2147 4.688413 CGGACGGAGGTAGTAGATAGTAAC 59.312 50.000 0.00 0.00 0.00 2.50
1699 2148 4.262635 CCGGACGGAGGTAGTAGATAGTAA 60.263 50.000 4.40 0.00 37.50 2.24
1700 2149 3.259374 CCGGACGGAGGTAGTAGATAGTA 59.741 52.174 4.40 0.00 37.50 1.82
1701 2150 2.038295 CCGGACGGAGGTAGTAGATAGT 59.962 54.545 4.40 0.00 37.50 2.12
1702 2151 2.301296 TCCGGACGGAGGTAGTAGATAG 59.699 54.545 9.76 0.00 39.76 2.08
1703 2152 2.329267 TCCGGACGGAGGTAGTAGATA 58.671 52.381 9.76 0.00 39.76 1.98
1704 2153 1.135094 TCCGGACGGAGGTAGTAGAT 58.865 55.000 9.76 0.00 39.76 1.98
1705 2154 2.607811 TCCGGACGGAGGTAGTAGA 58.392 57.895 9.76 0.00 39.76 2.59
1716 2166 1.589803 GGGACCAATAAATCCGGACG 58.410 55.000 6.12 0.00 35.67 4.79
1740 2190 8.980596 TCTATGGTCAAAATTTGGCAGAAATAT 58.019 29.630 12.62 0.01 36.88 1.28
1776 2227 4.294232 TGGTGACATGCGTAAACATTTTG 58.706 39.130 0.00 0.00 33.40 2.44
1785 2236 7.561021 AATATAATGTTTGGTGACATGCGTA 57.439 32.000 0.00 0.00 40.03 4.42
1836 2287 7.493320 GCATGCCAAGAAAAATTATCTCATTGA 59.507 33.333 6.36 0.00 0.00 2.57
1847 2298 7.690952 AATGTTAATGCATGCCAAGAAAAAT 57.309 28.000 16.68 0.47 0.00 1.82
1853 2304 5.866335 ACAAAATGTTAATGCATGCCAAG 57.134 34.783 16.68 0.64 0.00 3.61
1854 2305 6.933521 ACTAACAAAATGTTAATGCATGCCAA 59.066 30.769 16.68 3.67 41.70 4.52
1915 2367 2.364647 CCGTCCTGGTTTATAGGTCCTC 59.635 54.545 0.00 0.00 36.67 3.71
1916 2368 2.023695 TCCGTCCTGGTTTATAGGTCCT 60.024 50.000 0.00 0.00 39.52 3.85
1947 2399 2.116238 GGCTGGTCATAGTGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
1951 2403 2.561209 TAAGGCTGGTCATAGTGGGA 57.439 50.000 0.00 0.00 0.00 4.37
1981 2433 1.192534 GCACCTTTGTCGTCGAAGAAG 59.807 52.381 10.76 4.25 39.69 2.85
2031 2484 6.605471 ACAAGTACATCAGTAGACATGGAA 57.395 37.500 0.00 0.00 0.00 3.53
2038 2491 8.033038 GTCCATACAAACAAGTACATCAGTAGA 58.967 37.037 0.00 0.00 0.00 2.59
2047 2500 7.464178 CGCTTCATAGTCCATACAAACAAGTAC 60.464 40.741 0.00 0.00 0.00 2.73
2054 2507 6.811954 TCATACGCTTCATAGTCCATACAAA 58.188 36.000 0.00 0.00 0.00 2.83
2055 2508 6.399639 TCATACGCTTCATAGTCCATACAA 57.600 37.500 0.00 0.00 0.00 2.41
2056 2509 6.399639 TTCATACGCTTCATAGTCCATACA 57.600 37.500 0.00 0.00 0.00 2.29
2058 2511 8.803235 ACTTATTCATACGCTTCATAGTCCATA 58.197 33.333 0.00 0.00 0.00 2.74
2059 2512 7.671302 ACTTATTCATACGCTTCATAGTCCAT 58.329 34.615 0.00 0.00 0.00 3.41
2060 2513 7.050970 ACTTATTCATACGCTTCATAGTCCA 57.949 36.000 0.00 0.00 0.00 4.02
2087 2540 9.825972 CGCATAATTTATTCGGTATCTTCAAAT 57.174 29.630 1.18 0.00 0.00 2.32
2088 2541 9.047371 TCGCATAATTTATTCGGTATCTTCAAA 57.953 29.630 8.27 0.00 0.00 2.69
2089 2542 8.596271 TCGCATAATTTATTCGGTATCTTCAA 57.404 30.769 8.27 0.00 0.00 2.69
2090 2543 8.596271 TTCGCATAATTTATTCGGTATCTTCA 57.404 30.769 8.27 0.00 0.00 3.02
2091 2544 9.690434 GATTCGCATAATTTATTCGGTATCTTC 57.310 33.333 8.27 0.00 0.00 2.87
2092 2545 9.214957 TGATTCGCATAATTTATTCGGTATCTT 57.785 29.630 16.58 0.00 0.00 2.40
2093 2546 8.771920 TGATTCGCATAATTTATTCGGTATCT 57.228 30.769 16.58 1.00 0.00 1.98
2094 2547 9.988350 ATTGATTCGCATAATTTATTCGGTATC 57.012 29.630 8.27 10.88 0.00 2.24
2097 2550 8.999431 AGTATTGATTCGCATAATTTATTCGGT 58.001 29.630 8.27 0.00 0.00 4.69
2098 2551 9.825972 AAGTATTGATTCGCATAATTTATTCGG 57.174 29.630 8.27 0.00 0.00 4.30
2118 2571 6.777580 AGGGAAATCAGACACAAACAAGTATT 59.222 34.615 0.00 0.00 0.00 1.89
2119 2572 6.207417 CAGGGAAATCAGACACAAACAAGTAT 59.793 38.462 0.00 0.00 0.00 2.12
2120 2573 5.530915 CAGGGAAATCAGACACAAACAAGTA 59.469 40.000 0.00 0.00 0.00 2.24
2121 2574 4.339247 CAGGGAAATCAGACACAAACAAGT 59.661 41.667 0.00 0.00 0.00 3.16
2122 2575 4.794003 GCAGGGAAATCAGACACAAACAAG 60.794 45.833 0.00 0.00 0.00 3.16
2123 2576 3.068024 GCAGGGAAATCAGACACAAACAA 59.932 43.478 0.00 0.00 0.00 2.83
2124 2577 2.622942 GCAGGGAAATCAGACACAAACA 59.377 45.455 0.00 0.00 0.00 2.83
2125 2578 2.622942 TGCAGGGAAATCAGACACAAAC 59.377 45.455 0.00 0.00 0.00 2.93
2126 2579 2.942804 TGCAGGGAAATCAGACACAAA 58.057 42.857 0.00 0.00 0.00 2.83
2127 2580 2.655090 TGCAGGGAAATCAGACACAA 57.345 45.000 0.00 0.00 0.00 3.33
2128 2581 2.655090 TTGCAGGGAAATCAGACACA 57.345 45.000 0.00 0.00 0.00 3.72
2129 2582 5.591877 AGAATATTGCAGGGAAATCAGACAC 59.408 40.000 0.00 0.00 0.00 3.67
2130 2583 5.759059 AGAATATTGCAGGGAAATCAGACA 58.241 37.500 0.00 0.00 0.00 3.41
2131 2584 6.205658 GGTAGAATATTGCAGGGAAATCAGAC 59.794 42.308 0.00 0.00 0.00 3.51
2132 2585 6.101734 AGGTAGAATATTGCAGGGAAATCAGA 59.898 38.462 0.00 0.00 0.00 3.27
2133 2586 6.302269 AGGTAGAATATTGCAGGGAAATCAG 58.698 40.000 0.00 0.00 0.00 2.90
2134 2587 6.266131 AGGTAGAATATTGCAGGGAAATCA 57.734 37.500 0.00 0.00 0.00 2.57
2135 2588 7.588497 AAAGGTAGAATATTGCAGGGAAATC 57.412 36.000 0.00 0.00 0.00 2.17
2136 2589 7.841222 AGAAAAGGTAGAATATTGCAGGGAAAT 59.159 33.333 0.00 0.00 0.00 2.17
2137 2590 7.182060 AGAAAAGGTAGAATATTGCAGGGAAA 58.818 34.615 0.00 0.00 0.00 3.13
2138 2591 6.731467 AGAAAAGGTAGAATATTGCAGGGAA 58.269 36.000 0.00 0.00 0.00 3.97
2139 2592 6.327386 AGAAAAGGTAGAATATTGCAGGGA 57.673 37.500 0.00 0.00 0.00 4.20
2140 2593 8.697507 AATAGAAAAGGTAGAATATTGCAGGG 57.302 34.615 0.00 0.00 0.00 4.45
2165 2618 9.289303 CGAAAAGTCTCAAAAGAATGAAGAAAA 57.711 29.630 0.00 0.00 31.93 2.29
2166 2619 8.458843 ACGAAAAGTCTCAAAAGAATGAAGAAA 58.541 29.630 0.00 0.00 31.93 2.52
2167 2620 7.985476 ACGAAAAGTCTCAAAAGAATGAAGAA 58.015 30.769 0.00 0.00 31.93 2.52
2168 2621 7.553881 ACGAAAAGTCTCAAAAGAATGAAGA 57.446 32.000 0.00 0.00 31.93 2.87
2169 2622 9.159470 GTAACGAAAAGTCTCAAAAGAATGAAG 57.841 33.333 0.00 0.00 31.93 3.02
2170 2623 8.670135 TGTAACGAAAAGTCTCAAAAGAATGAA 58.330 29.630 0.00 0.00 31.93 2.57
2171 2624 8.203937 TGTAACGAAAAGTCTCAAAAGAATGA 57.796 30.769 0.00 0.00 31.93 2.57
2172 2625 8.122952 ACTGTAACGAAAAGTCTCAAAAGAATG 58.877 33.333 0.00 0.00 31.93 2.67
2173 2626 8.209917 ACTGTAACGAAAAGTCTCAAAAGAAT 57.790 30.769 0.00 0.00 31.93 2.40
2174 2627 7.548075 AGACTGTAACGAAAAGTCTCAAAAGAA 59.452 33.333 8.87 0.00 45.89 2.52
2175 2628 7.039882 AGACTGTAACGAAAAGTCTCAAAAGA 58.960 34.615 8.87 0.00 45.89 2.52
2176 2629 7.235430 AGACTGTAACGAAAAGTCTCAAAAG 57.765 36.000 8.87 0.00 45.89 2.27
2184 2637 9.978044 AGATTTAGTAAGACTGTAACGAAAAGT 57.022 29.630 0.00 0.00 0.00 2.66
2186 2639 9.970395 TGAGATTTAGTAAGACTGTAACGAAAA 57.030 29.630 0.00 0.00 0.00 2.29
2187 2640 9.970395 TTGAGATTTAGTAAGACTGTAACGAAA 57.030 29.630 0.00 0.00 0.00 3.46
2189 2642 8.025445 GGTTGAGATTTAGTAAGACTGTAACGA 58.975 37.037 0.00 0.00 0.00 3.85
2195 2648 6.622549 AGTCGGTTGAGATTTAGTAAGACTG 58.377 40.000 0.00 0.00 34.46 3.51
2197 2650 8.457261 TCTTAGTCGGTTGAGATTTAGTAAGAC 58.543 37.037 0.00 0.00 0.00 3.01
2199 2652 8.460428 AGTCTTAGTCGGTTGAGATTTAGTAAG 58.540 37.037 0.00 0.00 0.00 2.34
2202 2655 6.837471 AGTCTTAGTCGGTTGAGATTTAGT 57.163 37.500 0.00 0.00 0.00 2.24
2205 2658 5.221661 ACCAAGTCTTAGTCGGTTGAGATTT 60.222 40.000 0.00 0.00 0.00 2.17
2209 2662 3.662247 ACCAAGTCTTAGTCGGTTGAG 57.338 47.619 0.00 0.00 0.00 3.02
2210 2663 5.011329 ACATAACCAAGTCTTAGTCGGTTGA 59.989 40.000 12.98 1.87 40.15 3.18
2211 2664 5.235516 ACATAACCAAGTCTTAGTCGGTTG 58.764 41.667 12.98 3.68 40.15 3.77
2212 2665 5.245526 AGACATAACCAAGTCTTAGTCGGTT 59.754 40.000 9.36 9.36 42.12 4.44
2213 2666 4.771054 AGACATAACCAAGTCTTAGTCGGT 59.229 41.667 0.00 0.00 42.12 4.69
2214 2667 5.105877 TGAGACATAACCAAGTCTTAGTCGG 60.106 44.000 0.00 0.00 44.61 4.79
2215 2668 5.950883 TGAGACATAACCAAGTCTTAGTCG 58.049 41.667 0.00 0.00 44.61 4.18
2216 2669 7.221067 CGATTGAGACATAACCAAGTCTTAGTC 59.779 40.741 0.00 0.00 44.61 2.59
2217 2670 7.036220 CGATTGAGACATAACCAAGTCTTAGT 58.964 38.462 0.00 0.00 44.61 2.24
2218 2671 7.258441 TCGATTGAGACATAACCAAGTCTTAG 58.742 38.462 0.00 0.00 44.61 2.18
2219 2672 7.165460 TCGATTGAGACATAACCAAGTCTTA 57.835 36.000 0.00 0.00 44.61 2.10
2220 2673 6.037786 TCGATTGAGACATAACCAAGTCTT 57.962 37.500 0.00 0.00 44.61 3.01
2222 2675 8.594881 AATATCGATTGAGACATAACCAAGTC 57.405 34.615 1.71 0.00 35.02 3.01
2252 2705 9.049523 GCACAGATTTGATGTAAGATCTCAATA 57.950 33.333 0.00 0.00 0.00 1.90
2253 2706 7.555195 TGCACAGATTTGATGTAAGATCTCAAT 59.445 33.333 0.00 0.00 0.00 2.57
2254 2707 6.880529 TGCACAGATTTGATGTAAGATCTCAA 59.119 34.615 0.00 0.00 0.00 3.02
2255 2708 6.408869 TGCACAGATTTGATGTAAGATCTCA 58.591 36.000 0.00 0.00 0.00 3.27
2256 2709 6.915544 TGCACAGATTTGATGTAAGATCTC 57.084 37.500 0.00 0.00 0.00 2.75
2257 2710 7.692460 TTTGCACAGATTTGATGTAAGATCT 57.308 32.000 0.00 0.00 0.00 2.75
2258 2711 8.922058 ATTTTGCACAGATTTGATGTAAGATC 57.078 30.769 0.00 0.00 0.00 2.75
2290 2743 9.179909 TGACTGAGACCTAAACACAAATTTAAA 57.820 29.630 0.00 0.00 0.00 1.52
2291 2744 8.740123 TGACTGAGACCTAAACACAAATTTAA 57.260 30.769 0.00 0.00 0.00 1.52
2292 2745 8.617809 GTTGACTGAGACCTAAACACAAATTTA 58.382 33.333 0.00 0.00 0.00 1.40
2293 2746 7.339466 AGTTGACTGAGACCTAAACACAAATTT 59.661 33.333 0.00 0.00 0.00 1.82
2294 2747 6.828785 AGTTGACTGAGACCTAAACACAAATT 59.171 34.615 0.00 0.00 0.00 1.82
2295 2748 6.260936 CAGTTGACTGAGACCTAAACACAAAT 59.739 38.462 5.19 0.00 46.59 2.32
2296 2749 5.584649 CAGTTGACTGAGACCTAAACACAAA 59.415 40.000 5.19 0.00 46.59 2.83
2297 2750 5.116180 CAGTTGACTGAGACCTAAACACAA 58.884 41.667 5.19 0.00 46.59 3.33
2298 2751 4.693283 CAGTTGACTGAGACCTAAACACA 58.307 43.478 5.19 0.00 46.59 3.72
2310 2763 5.128827 ACTTGGTTAAGACTCAGTTGACTGA 59.871 40.000 12.83 12.83 42.35 3.41
2311 2764 5.360591 ACTTGGTTAAGACTCAGTTGACTG 58.639 41.667 4.77 4.77 39.94 3.51
2312 2765 5.364157 AGACTTGGTTAAGACTCAGTTGACT 59.636 40.000 0.00 0.00 34.57 3.41
2313 2766 5.602628 AGACTTGGTTAAGACTCAGTTGAC 58.397 41.667 0.00 0.00 34.57 3.18
2314 2767 5.871396 AGACTTGGTTAAGACTCAGTTGA 57.129 39.130 0.00 0.00 34.57 3.18
2321 2774 6.043243 TCCTTGATTGAGACTTGGTTAAGACT 59.957 38.462 0.00 0.00 40.70 3.24
2322 2775 6.231211 TCCTTGATTGAGACTTGGTTAAGAC 58.769 40.000 0.00 0.00 37.36 3.01
2323 2776 6.433847 TCCTTGATTGAGACTTGGTTAAGA 57.566 37.500 0.00 0.00 37.36 2.10
2324 2777 7.510549 TTTCCTTGATTGAGACTTGGTTAAG 57.489 36.000 0.00 0.00 39.86 1.85
2325 2778 7.889873 TTTTCCTTGATTGAGACTTGGTTAA 57.110 32.000 0.00 0.00 0.00 2.01
2326 2779 7.889873 TTTTTCCTTGATTGAGACTTGGTTA 57.110 32.000 0.00 0.00 0.00 2.85
2327 2780 6.790232 TTTTTCCTTGATTGAGACTTGGTT 57.210 33.333 0.00 0.00 0.00 3.67
2360 2813 8.396390 GCATCGAGATTCATGCAATATTTATCT 58.604 33.333 1.67 0.00 44.18 1.98
2361 2814 8.544409 GCATCGAGATTCATGCAATATTTATC 57.456 34.615 1.67 0.00 44.18 1.75
2371 2824 4.485024 AATCTTGCATCGAGATTCATGC 57.515 40.909 6.34 0.00 39.58 4.06
2372 2825 8.287503 TCATTTAATCTTGCATCGAGATTCATG 58.712 33.333 13.99 15.71 41.90 3.07
2373 2826 8.387190 TCATTTAATCTTGCATCGAGATTCAT 57.613 30.769 13.99 6.82 41.90 2.57
2374 2827 7.790823 TCATTTAATCTTGCATCGAGATTCA 57.209 32.000 13.99 2.99 41.90 2.57
2393 2846 9.823647 AAGTCTCAGTCGATGTTATATTCATTT 57.176 29.630 0.00 0.00 0.00 2.32
2401 2854 9.737427 CACTAATTAAGTCTCAGTCGATGTTAT 57.263 33.333 0.00 0.00 35.76 1.89
2402 2855 8.953313 TCACTAATTAAGTCTCAGTCGATGTTA 58.047 33.333 0.00 0.00 35.76 2.41
2403 2856 7.827701 TCACTAATTAAGTCTCAGTCGATGTT 58.172 34.615 0.00 0.00 35.76 2.71
2404 2857 7.392494 TCACTAATTAAGTCTCAGTCGATGT 57.608 36.000 0.00 0.00 35.76 3.06
2405 2858 7.971168 ACTTCACTAATTAAGTCTCAGTCGATG 59.029 37.037 0.00 0.00 35.76 3.84
2406 2859 8.057536 ACTTCACTAATTAAGTCTCAGTCGAT 57.942 34.615 0.00 0.00 35.76 3.59
2407 2860 7.450124 ACTTCACTAATTAAGTCTCAGTCGA 57.550 36.000 0.00 0.00 35.76 4.20
2408 2861 7.728580 GACTTCACTAATTAAGTCTCAGTCG 57.271 40.000 10.35 0.00 45.26 4.18
2416 2869 7.040617 TGTCGACTCAGACTTCACTAATTAAGT 60.041 37.037 17.92 0.00 41.47 2.24
2417 2870 7.306213 TGTCGACTCAGACTTCACTAATTAAG 58.694 38.462 17.92 0.00 41.47 1.85
2418 2871 7.174426 TCTGTCGACTCAGACTTCACTAATTAA 59.826 37.037 17.92 0.00 41.47 1.40
2419 2872 6.653740 TCTGTCGACTCAGACTTCACTAATTA 59.346 38.462 17.92 0.00 41.47 1.40
2420 2873 5.473846 TCTGTCGACTCAGACTTCACTAATT 59.526 40.000 17.92 0.00 41.47 1.40
2421 2874 5.004448 TCTGTCGACTCAGACTTCACTAAT 58.996 41.667 17.92 0.00 41.47 1.73
2422 2875 4.386711 TCTGTCGACTCAGACTTCACTAA 58.613 43.478 17.92 0.00 41.47 2.24
2423 2876 3.997681 CTCTGTCGACTCAGACTTCACTA 59.002 47.826 17.92 0.00 41.47 2.74
2424 2877 2.811431 CTCTGTCGACTCAGACTTCACT 59.189 50.000 17.92 0.00 41.47 3.41
2425 2878 2.095466 CCTCTGTCGACTCAGACTTCAC 60.095 54.545 17.92 0.00 41.47 3.18
2426 2879 2.155279 CCTCTGTCGACTCAGACTTCA 58.845 52.381 17.92 0.00 41.47 3.02
2427 2880 1.135517 GCCTCTGTCGACTCAGACTTC 60.136 57.143 17.92 0.00 41.47 3.01
2428 2881 0.885196 GCCTCTGTCGACTCAGACTT 59.115 55.000 17.92 0.00 41.47 3.01
2429 2882 0.037590 AGCCTCTGTCGACTCAGACT 59.962 55.000 17.92 7.19 41.47 3.24
2430 2883 0.885196 AAGCCTCTGTCGACTCAGAC 59.115 55.000 17.92 4.87 39.20 3.51
2431 2884 2.027100 TCTAAGCCTCTGTCGACTCAGA 60.027 50.000 17.92 11.18 41.40 3.27
2432 2885 2.360844 TCTAAGCCTCTGTCGACTCAG 58.639 52.381 17.92 11.81 36.85 3.35
2433 2886 2.488545 GTTCTAAGCCTCTGTCGACTCA 59.511 50.000 17.92 1.79 0.00 3.41
2434 2887 2.488545 TGTTCTAAGCCTCTGTCGACTC 59.511 50.000 17.92 0.99 0.00 3.36
2435 2888 2.515854 TGTTCTAAGCCTCTGTCGACT 58.484 47.619 17.92 0.00 0.00 4.18
2436 2889 2.987821 GTTGTTCTAAGCCTCTGTCGAC 59.012 50.000 9.11 9.11 0.00 4.20
2437 2890 2.891580 AGTTGTTCTAAGCCTCTGTCGA 59.108 45.455 0.00 0.00 0.00 4.20
2438 2891 3.305398 AGTTGTTCTAAGCCTCTGTCG 57.695 47.619 0.00 0.00 0.00 4.35
2439 2892 8.950208 AATAATAGTTGTTCTAAGCCTCTGTC 57.050 34.615 0.00 0.00 31.94 3.51
2440 2893 9.740710 AAAATAATAGTTGTTCTAAGCCTCTGT 57.259 29.630 0.00 0.00 31.94 3.41
2442 2895 9.959721 TGAAAATAATAGTTGTTCTAAGCCTCT 57.040 29.630 0.00 0.00 31.94 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.