>input_sequence_78503
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--------------------------------------------ATGGCCGGCGCGGCGCCCCACGTCATGGTGCTGCCA
TTCCCGGCGCAGGGCCACGTCACCCCGCTCATGGAGCTGTCGCACCGCCTCGTCGACCACGGCCTCCAGGTCACCTTCGT
CTGCACCGAGCCCATCCGCAAGCTCCTGCTCGACGCCCTCGCCCA---------------------CGGCGGGGAGGCGC
TGGACGGCATCCGCCTCGTCTTCGTACCGGACGGCCTGGCCGACGGCGACAGCCACAGGGACCTGGGCAAGGTCCTGGCC
GGGGTCTTGGGACGCGTGCCGGGCTACGTGGAGGAGCTCATCAGGGCGACGGGGGCGTCCGGGGA---------------
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-------------------------------------------AAAGAAGGTGCAGTGGCCCGTCGCCGAGGCGACCATG
GCGTGCTGCTTC--------------------------------------------------------------------
--------------------------------------------------------CAGGTCGCAAGGAATCTCGGCGTC
CGGGTCGCTTCAGTCTGCCCGTCGTCCGCGGCGTGCCTTGTCACCTCGCTCAGGATTCCCCAGCTTAGGCTAATCATAGT
GGAGAATAACTTAGACTAG-------------------------------------------------------------
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----------------------------------------------------------------
>chr5B_1_TraesCS5B01G398700
AGGTGTCGGTATCCGCCGCCTCCAACGCATGCGCCGCCACCGATGAAAGGAGCTTCTCGAGATCCAATCTTGCGCAGCAT
CTCATCCATGCGCCGCCGCCGCTGAAAGGAGCTTTTCTAGATCCAATCTTACACGACAGTTTTTGCTTCAGTTGTGAAAT
GGGGAGGAACGCGCGGTACAGCTTCGAGGATATGGAGGCGCATGTAGGAGGAGTACAGTACAGTGGGCGATGAACATCGA
TGGCGCGGCCGGCCGCCGCAGCCGCCATGGATGAACGCTGCAAGGTGGGGAATAAAATAGTAAAGAAGGGGCGTACGGAA
GAAGATTACATGGCGAGTGGAGGGTACCGAGGCAGACGCATACGTGTAGTACAAACTCGCCGGCTGGACAGAGAACCACG
GCGGTGCATCACGGATGGAGGACCACGGCGGTGCATCACGGACCGAGGAACAGGAAACGAAGAGGTCGACGGGAGGGATA
GCATTGCGAACGACACACTGAACGAACTGGCCCGTGCGGAGAATGAGAAGTGTTTTGACTGGACCTGGGCCTTTGATGGC
CCGTATATGGAGAGGGACGGGAGCTCGCTCTACATAGCAGCGGCCCACGAGATGGTGCGTGGAGCGCCTGAACGACGACC
CGGGAAGACTGGGGGTGATCTACATCGTACGCGAAGTGATCCGGCGGCTCTGAGGCTCAAAACACCGTGGAAGCTCCGTG
GTAGCCCTGTTATACTGTTTCTCAATTCACAGGCCGAATATGACCACCCCCACATGTGGCCAACGGAACAAGGAGACGGT
TTATCCTTATTCTCCGCGGAAACGACGAGAACGGCCAGCGTGTGGACCACGCAGAAATGCCAAAATGTATACAAACGCGC
CCTTGTCGATCGGTCTGCGTTTGTACCTCTCTGGCTACATCGCATTGAGAGAGAAAGAGAGTGTGTGCCCACGCTGCCGC
AGTTGTACACTGCCTGT----CCAACTCGACCGGCGAATCGGCGATGGCCGGCGCGGCGCCCCACGTCATGGTGCTGCCA
TTCCCGGCGCAGGGCCACGTCACCCCGCTCATGGAGCTGTCGCACCGCCTCGTCGACCACGGCCTCCAGGTCACCTTCGT
CTGCACCGAGCCCATCCGCAAGCTCCTGCTCGACGCCCTCGCCCA---------------------CGGCGGGGAGGCGC
TGGACGGCATCCGCCTCGTCTTCGTACCGGACGGCCTGGCCGACGGCGACAGCCACAGGGACCTGGGCAAGGTCCTGGCC
GGGGTCTTGGGACGCGTGCCGGGCTACGTGGAGGAGCTCATCAGGGCGACGGGGGCGTCCGGGGA---------------
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-------------------------------------------AAAGAAGGTGCAGTGGCCCGTCGCCGAGGCGACCATG
GCGTGCTGCTTC--------------------------------------------------------------------
--------------------------------------------------------CAGGTCGCAAGGAATCTCGGCGTC
CGGGTCGCTTCAGTCTGCCCGTCGTCCGCGGCGTGCCTTGTCACCTCGCTCAGGATTCCCCAGCTTAGGCTAATCATAGT
GGAGAATAACTTAGACTAGTAACATACATATGTTATTAGTCTATATTATTACCTTCATAGTGGGTAGTGTCATAGATGTG
GTAACATAGTTACCTTCATTTATTACTTTTTAGACTCATTATATATTGGAAAGCGC-TATGTGATGGTAACATATTATGT
TATTCTATTTGCCTCTCTCCTCATTAACTATTTGCCACATCACCATTTTACTTATGTGGCATCTATGTTACTATC-TACT
ACCTCCGTCCGGATTTATTGGTCCCCATTATATTTC-TGCCAAATTTTGACCATAGATTAAACTAACAAAATGTTTACGC
ATGTCACCAAACATTATATTTTTGAAAACTATGTTCAAATACGAATTCAATGAGATAATTTTTCT-TGGCATGCATTAAC
ATTTTGTTAGTTAAATACTTAGTCAAAATTTGACACAAACTATAAAGAGGACCTATAAACCAGGACGGAGGTAGTATGTT
ACTCCCACTATGACCAGCCTTATACAGGATGGCTTCTTCGACGACAAA-GGTGCCTGCTCCACCTCATTAGTTTTCTTGT
TTTTTCCATGTCTACTGATGTACTTGTTTGTATGGACTATGAAGCGTATGAATAAGTTAATTTGAAGATACCGAATAAAT
TATGCGAATCAATACTTGTTTGTGTCTGATTTCCCTGCAATATTCTACCTTTTCTATTTTTCTTCATTCTTTTGAGACTT
TTCGTTACAGTCTTACTAAATCTCAACCGACTAAGACTTGGTTATGTCTCAATCGATATTATATTATTGAGATCTTACAT
CAAATCTGTGCAAAATATATATTTTAAATTTGTGTTTAGGTCTCAGTCAACTGAGTCTTAACCAAGTCTCAATCAAGGAA
AAAAAATTAAAAAGATAAATATTGCATGAATCTCGATGCAAGATTAAATGAATATAACATCGACTGAGACTTAATTAGTG
AAGTCTGAGTCGACAGAGGCTTAGAACAACTATTATTTTCATTTTCCTTGTTTTTTACATGTTT
>chr3B_1
AGGTGTCGGTATCCGCCGCCTCCAACCCATGTGCCGCCACCGATGAAAGGAGCTTCTCGAGATCCAATCTTGCGCAGCAT
CTCATCCATGCGCTGCCGCCGCTGAGAGGAGCTTTTCTAGATCCAATCTTACACGGCAGTTTTTGCTTCAGTTGTGAAAT
GGGGAGGGACACGCGGTACAGCTTCGAGGGTATGGAGGCGCATGTAGGAGGAGTACAGTACAGTGGGCAATGGAAATCGA
TGGCGCGGCCGGCCGCCGCAGCCGCCATGGAGGAACGCTGCAAGGTGGGGAATAAAATAGTAAAGAAGGGGCGTATGGAA
GAAGATTACATGGCGAGTGGAGGGTACCGAGGCGGACGCAGACGTGTAGTACAAACTCGCCGGCTGGACGGAGAACCACG
GCGGCGCATCACGGATGGAGGACCACGGCGGTGCATTACGGACCGAGGAACAGGAAACGAAGAGGTCGACGGGAGGGATA
GCATTGCGAACGACACCCTGAACGAATTGGCCCGTGC---GAATGGGAAGTGTTTTAAC---------------------
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---------------------------------------------------------------------------TGGAC
CTGGGCCTTTGATGGCCCGTATACGGAGAGGGACGGGAGCTCGCTCTGCAGAGCAGCAGCCCGCGAGACGGTGCGTGGAG
CGCCGGA-------------------------------------------------------------------------
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-----------------------------------------------------------------ACGACCTGGG-----
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---------------------------------------GAAGACTGGGGGTGATCTACATCGTACGCT-AAGTGATCCA
ATGGCTCTGAGGCTCAAAACACCGTGGAGGCTCCGTGGTAGC--------------------------------------
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CCCGTTATACTGTTTCTCAATTC---------------------------------------------------------
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>chr2D_1
AGGTAT--------------------------------------------------------------------------
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----CGGTATCTGCCTCCTCCAATCCATGCC--------CCGTCGCCGCTAGCTGAAAGGACCTTCCCGAGGTCCAATCT
TGCGCGAC--------------------------ATCTCATCCATGCGCCGCCGCCGCTGAAAGGAGCTTTTCGAGATCC
TTCTTAGGCGTCAGTTTTTGCTTCAGTTTCAAATTGGAAGTGACGCGCGGTACAGCTGCGAGAGTATGGAGAAGGATGTA
GGAGGAGTACAGCTGGCCATGGACGTTGCCGGCGCAGCTGTCCGCCGCAGCTGCCATGGAGGAACGCTGCAAGATGGGAA
ATTAAAAACAGTAAAAAGGGGCCTAT---GGAGGAACACATAGAGAGTAGAGGGTATCGACGCGGAGATAGACCTGTAGT
AGAGAGTCGCCGACGGGACAGATGACGACGGCGGCGCATCACGGATGAAGGAACGGTGGCGCATCGTGGACCGAGGAACA
GTAAACGAAGAGATCGAGGGAACGGGATAGGGTTGTGAACACACTGGACCACCTGCCCCCATGTGAATGGGAAGTTGGAC
CTGGGCCTTTGATGGCCCGAATACGGAGAGGGACGGGAGCTCGCTCTGCAGAGCAGCGGCCCAGGAGACGGTGCGTCGAG
CGCCAGG-------------------------------------------------------------------------
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-----------------------------------------------------------------ACGACCTGGG-----
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---------------------------------------AACGACTGA-GGTGATCTACATCGTAAGTTCTAGTGATCCG
ACGGCTGACAGCCTGAAAACACTGTGGAGGCTCGGTGGTAGC--------------------------------------
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TGCGTTATATTGTTTCTCGATT----------------------------------------------------------
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>chr4D_1
AGGTGT--------------------------------------------------------------------------
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----CGGTATCTGCCTCCTCCAATCCATGCC--------CCGCCGCCGCTAGCTGAAAGGACCTTCCCGAGGTCCAATCT
TGCACGAC--------------------------ATCTCATCCATGCGCCGCCGCCGCTGAAAGGAGCTTTTCGAGATCC
TTCTTACGCGGCAGTTTTTGCTTCAGTTTCAAATTGGAAGTGACGCGCGGTACAACTGCGAGAGTATGGAGAAGGATGTA
GGAGGAGTACAGCCAGCCATGGACGTCGCCGGCGCAGCTGTCCGCCGCAGCTGCCATGGAGGAACGCTGCAAGATGGGAA
ATTAAAAACAGTAAAAAGGGGCCTACAGAGGAAGAATACATAGAGAGTAGAGGGTGCCAACGCGGAGATAGACCTGTAGT
AGAGAGTCGCCGACGGGATAGATGACCACGGCGGCGCATCACGGATGAATGAACGGTGGCTCATCGTGGACCGAGGAACA
CTAAACGAAGAGGTCGAGGGAACGGGATAGCGCTGTGAATACACTGGACCACCTGCCCCGTGC-GAATGGGAAGTTGGAC
CTGGGCCTTTGATGGCCCGAATACGGAGAGGGAAGGGAGCTCGCTCCGCAGAGCAGCGGCCCGCGAGATGGTGTATGGAG
CGCCAGG-------------------------------------------------------------------------
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-----------------------------------------------------------------ATGACATGGG-----
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---------------------------------------GACGACTGA-GGTGAT-------------TCAAGTGATCAG
ACGGCTAGCAGGCTGAAAACACTGTGGAGGCTGGGTGTTAGC--------------------------------------
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TACGTTATACTGTTTCTCAAT-----------------------------------------------------------
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----------------------------------------------------------------
>chr5D_739
TTCTCACTCACAGGCC----------------------------------------------------------------
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--------------------------------GCCGAATACGACCACCCCCACATGTGGCCAACGGAACAAGGAGACGGT
TTATCCTTCTTCTCCGCGGAAACGACGAGAACGGCCAGCGTGCGGACGACGCAGAAATGCCAAAATGTATAC-AACGCGC
CCATGTCAGTC--TCTGCGTCTCTACCTCTCTGGCTACATCGCACTGAGAGATAAAGAGAGTGTGTGCCCACGCTGCCGC
AGCTGTACACCGCCTGT----CCAACTCGACCGGCGAATCGGCGATGGCCGGCGCGGCGCCTCACGTCATGGTGCTGCCG
TTCCCGGCGCAGGGCCACGTCACCCCGCTCATGGAGCTGTCGCACCGCCTCGTCGACCACGGCCTTCGGGTCACCTTCGT
CTGCACCGAGCCCATCCGCAAGCTTCTTCTCGATGCCCTCGCCGA---------------------CAACAAGAAGGCGC
TGGACGGCATCCGCCTCGTCTCCGTACCGGACGGTCTGGCCGACGGCGACAGCCACAGGGACCTAGGCAAGGTCCTGGCG
GGGGTCTTGGGGCGCGTGCCGGGCTACGTGGAGGAGCTCATCAGGAAGGCGGAGGCGTCCGAGGA---------------
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-------------------------------------------GAAGAAGGTGCGGTGGCTCGTCGCCGACGCCACCATG
GCGTGCTGCTTC--------------------------------------------------------------------
--------------------------------------------------------CAGGCCGCGAGGAGTCTCGGCGTC
CGGGTCGCTTCCGTCTGCCCGTCGTCCGCGGCGTGCCTTGTCACGTCGCTTAGGATTCCCCAGCTC--------------
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---------------------ATACAGGATGGTTTCTTCGACGACAAA-GGTGCCTGCTCCACTGCATTAATTTTCTTGT
TTTATCCATGCTTACTGCTATACTT-------------------------------------------------------
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>chr5B_901
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--------------------TTCTACCGCTCTGGCTACAGCGCACCGAGAG----AGTGAGAGAGTGCCCACGCTGCCGC
TAC-GCACATTGCCTGCCCAGCCAGCCCGACCGGCGAATCGGCGATGGCCGGCGCGGCGCCCCACGTCATGGTGCTGCCG
TTCCCGGCGCAGGGCCACGTCACCCCGCTCATGGAGCTCTCGCACCGCCTCGTCGACCACGGCTTCCAGGTCACCTTCGT
CTGCACCGAGCCCATCCACAAGCTCCTTCTTGACGCCCTGCAGCAGAACGCCCACAGCGGCAGA---GGCGATGAGGCGC
TGGATGGGATCCGCCTGGTCTCCATACCGGACGGCCTGGCCGACGGCGACAGCCGCAGGGACCTAGGCAAGGTCCTGGCC
GGGGTCTCGGGGCGCGTGCCGGCCTACGTGGAGGAGCTCATCAGGGAGACGGAGGCGTCCGGGAA---------------
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-------------------------------------------GAGGAAGGTGCAGTGGCTCGTCGCCGACTCCACCATG
GCGTGCTGCTAC--------------------------------------------------------------------
--------------------------------------------------------CAGGCCGCGAGGAACCTCGGCGTC
CGGGTCGCCTCCGTCTGCCCGGCGTCCGCGGCGTGCCTTGTCACGTCGCTTAGGATTCCTCAGCT---------------
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>chr5D_936
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-------------------------------------------------------AGAGAGTGAGTGGCCACGCTCCCGC
TAA-GCACATTGCCTGT----CCAGCCCTTCCGGCGAATCGGCGATGGCCGGCGCGGCGCCGCACGTCATGGTGCTGCCG
TTCCCGGCGCAGGGCCACGTCACCCCGCTCATGGAGCTGTCGCACCGCCTCGTCGACCACGGCTTCCAGGTCACCTTCGT
CTGCACCGAGCCCATCCACAAGCTCCTTCTTGACGCCCTGCAGCGGGACGCCGACGGCGACAGCGGCGGCGGTGAGGCGC
TGGACGGGATCCGCCTCGTCTCCATACCGGACGGCCTGGCCGACGGCGACAGCCGCAGGGACCTAGGCAAGGTCCTGGCC
GGGGTCTTGGGGCGCGTGCCGGGCTACGTGGTGGAGCTCATCAGGGCGACGGAGGCGTCCGGGGA---------------
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-------------------------------------------GAGGAAGGTGCGGTGGCTCGTCGCCGACTCCACCATG
GCGTGCTGCTAC--------------------------------------------------------------------
--------------------------------------------------------CAGGCCGCGAGGGATCTCGGCGTC
CGGGTCGCCTCCGTCTGCCCGGCGTCCGCGGCGTGCCTTGTCACGTCGCTCAGGATTCCCCAGCT---------------
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>chr5A_954
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-------------------------------------------------------------------------CTGCCGC
TGC-GCACATTGCCTGT----TCAGCCCGACCGGCGAACCGGCCATGGCCGGGGCGGCGCCCCACGTCATGGTGCTGCCG
TTCCCGGCGCAGGGCCACGTCACCCCGCTCATGGAGCTCTCGCACCGCCTCGTCGACCACGGCCTCCAGGTCACCTTCGT
CTGCACCGAGCCCATCCACAAGCTCCTTCTCGACGCCCTGCCGCGGAA---------------CGGCGGCGGCGAGGCGC
TGGACGGGATCCGCCTGGTCTCCGTACCGGACGGCCTGGCCGACGGCGACAGCCGCAGGGACCTAGGCAAGGTCCTGGCC
GGGGTCTTGGGGCGCGTGCCGGGCCACGTGGCGGAGCTCATCAGGGAGACGGAGGCGTCCGGGGA---------------
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-------------------------------------------GAGGAAGGTGCGGTGGCTCGTCGCCGACTCCACCATG
GCGTGCTGCTTC--------------------------------------------------------------------
--------------------------------------------------------CAGGCCGCGAGGAATCTCGGCGTC
CGGGTCGCCTCCGTCTGCCCGGCGTCCGCGGCGTGCCTTGCCACGTCGCTCAGGATTCCCCAGCT---------------
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>chr3B_1460
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------------------------------------------------------------------AGGCTGGTCATAGT
GGGGAGTAACTTAGACTAGTAACATGCATATGTTACTAGTTTATGTTACTACCTCTATAGTGCATAGTACCTTAGAT-TA
GTATCATAGGTGGTCTCATTTATTGCCATGCATGACACATAGTAGCATCACATTTATTATGTTACGGTATCTACCTATGT
TACTATAACCATCTCTCTCTTCCTTAATTGCCTGCCACATAAGCATGTTTGCGAGTCCCAAGTGCATGATACTACTTACT
ACCTCTGTCCGGGTTTATTGGTCCCCATTGTATTTCGTGCCAAATTTTGACCATAGATTAAACTAAGAAAATGTTCACGC
ATGTCACCAAACATTATATTTTTCAAAACTATGTTCAAATACGAATCCAATGAGATATTTTTTTCATGACATGCATTAAC
ATTTTGTTAGTTAAATCTTTAGTCAAAATTTGGCACAAACTATAAAAGGGACCTATAAACCAGGACAGAGGTAGTATGCT
ACCCCCACTATGGCCAGCCTTA----------------------------------------------------------
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----------------------------------------------------------------
>SNPs
--------------------------S----S------------------------------------------------
-------------S-----------S-----------------------------S------------------------
-------S--S------------------S--------------------------------------S---S-S-----
-------------------------------S-------------------------------------------S----
---------------------------------S------S----------------------------S----------
----S-------------------------------S-------------------------------------------
----------------S---------S----------SSS-----S----------S--SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S---------------------------------------
--------S---------------------------------S----S------------------------S-------
--S----SS--SS---------S---------------------S-------S---------------------------
--S----------------------------------------------------------------------------S
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
---------------------S------------------------------------------S---------------
-----------S----------------------------------------S---------------------------
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-------------------------------------------S----------------S---------S--S------
--------------------------------------------------------------------------------
------------------------------------------------------------S---S---------------
-----------S--------------------------------S--------------------S-----SS-------
--S--S-------------------S---------S----S---S---S-----SS------SS----SS-S-----S-S
---S-----S-SSSS---------S-SS-SS-SSSSSSS--SSSSSSSS-S-SSSS------S-S----S-SSSS-----
--S-S--SSSSS-------S--S----S-SSS--------S-S---S--SSSS-SSSSSS-SSSSSSSSSSSSS------
-----S------S----------------S------------------------------------S--------S----
-----------------------S----------------------S----------S-----SS---S-----------
----------------SS--------------S-------------SS------------------S-----------S-
--S---------S-------------------S------------------------------SS-----S---------
---S------S--------S------SSS-SSS--SS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
-S-----S-S-S--S--S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_712
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----------------------------------------------------AGGCTCAAAACACCGTGGAA--------
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>reverse_2882
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-AGTCTGAGTCGACAGAGGCT-------------------------------------------
