Multiple sequence alignment - TraesCS5B01G395400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G395400 chr5B 100.000 2637 0 0 1 2637 572856813 572854177 0.000000e+00 4870
1 TraesCS5B01G395400 chr5D 91.451 2082 86 34 453 2496 465449378 465447351 0.000000e+00 2774
2 TraesCS5B01G395400 chr5D 91.384 2031 88 39 669 2637 465449185 465447180 0.000000e+00 2700
3 TraesCS5B01G395400 chr5D 86.058 416 35 10 1 401 465467432 465467025 2.430000e-115 425
4 TraesCS5B01G395400 chr5A 90.976 1485 86 20 668 2110 585739776 585738298 0.000000e+00 1956
5 TraesCS5B01G395400 chr5A 84.841 409 36 10 1 390 585742208 585741807 3.180000e-104 388
6 TraesCS5B01G395400 chr5A 83.191 351 22 20 2123 2457 585738152 585737823 1.190000e-73 287
7 TraesCS5B01G395400 chr5A 90.141 142 7 6 546 682 585739869 585739730 7.500000e-41 178
8 TraesCS5B01G395400 chr5A 87.903 124 11 1 441 560 585741637 585741514 2.740000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G395400 chr5B 572854177 572856813 2636 True 4870.0 4870 100.0000 1 2637 1 chr5B.!!$R1 2636
1 TraesCS5B01G395400 chr5D 465447180 465449378 2198 True 2737.0 2774 91.4175 453 2637 2 chr5D.!!$R2 2184
2 TraesCS5B01G395400 chr5A 585737823 585742208 4385 True 590.4 1956 87.4104 1 2457 5 chr5A.!!$R1 2456

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
654 2464 0.10212 CAAAAACCAGGCGCACTTCA 59.898 50.0 10.83 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2084 3941 0.251341 AGCCGCCTCCTTGACAAAAT 60.251 50.0 0.0 0.0 0.0 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 6.212993 TCAAGGAAGGGATGAGATCATAGATG 59.787 42.308 0.00 0.00 36.57 2.90
41 42 5.663631 AGGAAGGGATGAGATCATAGATGT 58.336 41.667 0.00 0.00 36.57 3.06
44 45 6.013898 GGAAGGGATGAGATCATAGATGTCAA 60.014 42.308 10.32 0.00 36.57 3.18
49 50 8.484575 GGGATGAGATCATAGATGTCAATGTAT 58.515 37.037 10.32 0.00 36.57 2.29
162 163 9.236006 CTTACTGGATTCCCTAATGATTAATGG 57.764 37.037 0.00 0.00 0.00 3.16
172 173 9.713684 TCCCTAATGATTAATGGAAAAATGACT 57.286 29.630 0.00 0.00 0.00 3.41
179 194 7.840716 TGATTAATGGAAAAATGACTCATCCCT 59.159 33.333 0.00 0.00 0.00 4.20
182 197 5.779241 TGGAAAAATGACTCATCCCTACT 57.221 39.130 0.00 0.00 0.00 2.57
256 274 5.806654 ATTTGTTAGCCCAAACAATGACT 57.193 34.783 9.60 0.00 45.91 3.41
263 281 3.146066 GCCCAAACAATGACTCACTACA 58.854 45.455 0.00 0.00 0.00 2.74
277 295 7.438564 TGACTCACTACAAGTGTTGCTTAATA 58.561 34.615 6.93 0.00 46.03 0.98
284 302 2.153680 GTGTTGCTTAATACACGGCG 57.846 50.000 4.80 4.80 35.77 6.46
292 310 2.502213 TAATACACGGCGTGATCTGG 57.498 50.000 42.65 18.81 36.96 3.86
298 316 1.519455 CGGCGTGATCTGGGAAGAC 60.519 63.158 0.00 0.00 0.00 3.01
308 326 6.986817 CGTGATCTGGGAAGACTACATTATTT 59.013 38.462 0.00 0.00 0.00 1.40
309 327 8.141909 CGTGATCTGGGAAGACTACATTATTTA 58.858 37.037 0.00 0.00 0.00 1.40
332 350 2.859165 AATTCGCTCTTCTGGGTTGA 57.141 45.000 0.00 0.00 0.00 3.18
336 354 2.925724 TCGCTCTTCTGGGTTGAAAAA 58.074 42.857 0.00 0.00 0.00 1.94
368 386 1.396301 CTGTTCGAGGAAGCTTCATGC 59.604 52.381 27.02 14.28 43.29 4.06
384 402 0.321671 ATGCGCGCCCATAGTATTCT 59.678 50.000 30.77 0.00 0.00 2.40
390 408 3.553096 CGCGCCCATAGTATTCTCTTCTT 60.553 47.826 0.00 0.00 0.00 2.52
391 409 4.381411 GCGCCCATAGTATTCTCTTCTTT 58.619 43.478 0.00 0.00 0.00 2.52
392 410 5.539048 GCGCCCATAGTATTCTCTTCTTTA 58.461 41.667 0.00 0.00 0.00 1.85
393 411 5.989777 GCGCCCATAGTATTCTCTTCTTTAA 59.010 40.000 0.00 0.00 0.00 1.52
394 412 6.651225 GCGCCCATAGTATTCTCTTCTTTAAT 59.349 38.462 0.00 0.00 0.00 1.40
395 413 7.360438 GCGCCCATAGTATTCTCTTCTTTAATG 60.360 40.741 0.00 0.00 0.00 1.90
397 415 9.998106 GCCCATAGTATTCTCTTCTTTAATGTA 57.002 33.333 0.00 0.00 0.00 2.29
475 615 8.246908 TGCAAAATCAAAATCTGAATAGCTTG 57.753 30.769 0.00 0.00 37.67 4.01
653 2463 0.597377 CCAAAAACCAGGCGCACTTC 60.597 55.000 10.83 0.00 0.00 3.01
654 2464 0.102120 CAAAAACCAGGCGCACTTCA 59.898 50.000 10.83 0.00 0.00 3.02
655 2465 0.102300 AAAAACCAGGCGCACTTCAC 59.898 50.000 10.83 0.00 0.00 3.18
656 2466 0.751643 AAAACCAGGCGCACTTCACT 60.752 50.000 10.83 0.00 0.00 3.41
657 2467 1.166531 AAACCAGGCGCACTTCACTC 61.167 55.000 10.83 0.00 0.00 3.51
658 2468 3.114616 CCAGGCGCACTTCACTCG 61.115 66.667 10.83 0.00 0.00 4.18
664 2474 3.525059 CGCACTTCACTCGCAAAAA 57.475 47.368 0.00 0.00 0.00 1.94
892 2707 5.221087 CCTCTTCAGTTCTTATCCGGAGTAC 60.221 48.000 11.34 0.06 0.00 2.73
977 2793 0.547712 CACCTCTCCTCCCTTTCCCA 60.548 60.000 0.00 0.00 0.00 4.37
1099 2916 4.156182 GGCGTTGTAGTATTTGTTTCTGC 58.844 43.478 0.00 0.00 0.00 4.26
1159 2977 2.525629 TTGAGGTGGTGCCGGAGA 60.526 61.111 5.05 0.00 43.70 3.71
1346 3165 1.078918 CTGGTGCGCATGAAGGAGA 60.079 57.895 15.91 0.00 0.00 3.71
1507 3335 2.677228 CCGACCAAGCCCAAGGAT 59.323 61.111 0.00 0.00 0.00 3.24
1510 3338 1.915078 CGACCAAGCCCAAGGATCCT 61.915 60.000 9.02 9.02 0.00 3.24
1519 3347 1.626356 CCAAGGATCCTGAGGCCGAA 61.626 60.000 17.02 0.00 0.00 4.30
1522 3350 2.439104 GGATCCTGAGGCCGAAGCT 61.439 63.158 3.84 0.00 39.73 3.74
1555 3410 2.930562 AAGGCCAAGACCGCTCCT 60.931 61.111 5.01 0.00 33.69 3.69
1556 3411 1.612442 AAGGCCAAGACCGCTCCTA 60.612 57.895 5.01 0.00 33.69 2.94
1648 3503 4.500116 GCCTGACTCGTCCTCCGC 62.500 72.222 0.00 0.00 36.19 5.54
1746 3601 2.631418 TTGTCGGTCGCTCTCTTTAG 57.369 50.000 0.00 0.00 0.00 1.85
1838 3693 1.974249 CTGTCGTGGTCGTAGCGCTA 61.974 60.000 14.45 14.45 38.33 4.26
1857 3712 1.243902 ACCGCCATTGTTGTAACCTG 58.756 50.000 0.00 0.00 0.00 4.00
1937 3792 3.992943 TCGGTGGATGGATTAACTGTT 57.007 42.857 0.00 0.00 0.00 3.16
1941 3796 4.457603 CGGTGGATGGATTAACTGTTTTGA 59.542 41.667 0.00 0.00 0.00 2.69
1985 3840 2.301870 CCTCAGTTTGCTGTACCAGGTA 59.698 50.000 0.00 0.00 43.05 3.08
1995 3850 2.968574 CTGTACCAGGTATCTGCTCCAT 59.031 50.000 1.54 0.00 39.61 3.41
2001 3856 3.643320 CCAGGTATCTGCTCCATTGACTA 59.357 47.826 0.00 0.00 39.61 2.59
2010 3865 3.838317 TGCTCCATTGACTAGTTGGTAGT 59.162 43.478 11.09 0.00 45.34 2.73
2012 3867 4.759782 CTCCATTGACTAGTTGGTAGTGG 58.240 47.826 11.09 8.22 42.48 4.00
2014 3869 5.335261 TCCATTGACTAGTTGGTAGTGGTA 58.665 41.667 11.09 0.00 42.48 3.25
2015 3870 5.186409 TCCATTGACTAGTTGGTAGTGGTAC 59.814 44.000 11.09 0.00 42.48 3.34
2017 3872 6.379133 CCATTGACTAGTTGGTAGTGGTACTA 59.621 42.308 0.00 0.00 42.48 1.82
2019 3874 4.946157 TGACTAGTTGGTAGTGGTACTAGC 59.054 45.833 10.37 10.37 46.34 3.42
2024 3879 2.873133 GGTAGTGGTACTAGCAGCTG 57.127 55.000 10.11 10.11 45.67 4.24
2025 3880 2.100989 GGTAGTGGTACTAGCAGCTGT 58.899 52.381 16.64 4.79 45.67 4.40
2027 3882 1.187087 AGTGGTACTAGCAGCTGTCC 58.813 55.000 16.64 9.01 0.00 4.02
2030 3885 1.550524 TGGTACTAGCAGCTGTCCTTG 59.449 52.381 16.64 8.31 0.00 3.61
2031 3886 1.134670 GGTACTAGCAGCTGTCCTTGG 60.135 57.143 16.64 3.73 0.00 3.61
2032 3887 1.550976 GTACTAGCAGCTGTCCTTGGT 59.449 52.381 16.64 9.33 0.00 3.67
2033 3888 1.938585 ACTAGCAGCTGTCCTTGGTA 58.061 50.000 16.64 0.00 0.00 3.25
2034 3889 1.827969 ACTAGCAGCTGTCCTTGGTAG 59.172 52.381 16.64 10.52 38.06 3.18
2035 3890 2.103373 CTAGCAGCTGTCCTTGGTAGA 58.897 52.381 16.64 0.00 35.20 2.59
2036 3891 1.352083 AGCAGCTGTCCTTGGTAGAA 58.648 50.000 16.64 0.00 0.00 2.10
2037 3892 1.277557 AGCAGCTGTCCTTGGTAGAAG 59.722 52.381 16.64 0.00 0.00 2.85
2078 3935 7.923344 CCTGTTAAGATTCGTCAGTAATGATCT 59.077 37.037 0.00 0.00 0.00 2.75
2084 3941 5.914898 TTCGTCAGTAATGATCTCTTCCA 57.085 39.130 0.00 0.00 0.00 3.53
2092 3949 8.102676 TCAGTAATGATCTCTTCCATTTTGTCA 58.897 33.333 0.00 0.00 35.02 3.58
2284 4283 3.815401 AGTACCACAACACAATCTTGAGC 59.185 43.478 0.00 0.00 0.00 4.26
2318 4317 1.400242 GGCAACATGCTCGTTTGACTC 60.400 52.381 2.00 0.00 44.28 3.36
2324 4335 2.839486 TGCTCGTTTGACTCCATCTT 57.161 45.000 0.00 0.00 0.00 2.40
2335 4346 3.769844 TGACTCCATCTTAGAGACAACCC 59.230 47.826 0.00 0.00 34.01 4.11
2351 4362 5.878669 AGACAACCCCATTTATCTACGAAAC 59.121 40.000 0.00 0.00 0.00 2.78
2414 4429 4.351874 ACATGGTCGATATAAGGTTGGG 57.648 45.455 0.00 0.00 0.00 4.12
2445 4460 0.677842 ACACTGTGGAAGGTACGGAC 59.322 55.000 13.09 0.00 0.00 4.79
2537 4580 2.935238 GCGGCAGACAGGTTATCTGAAA 60.935 50.000 0.00 0.00 45.46 2.69
2539 4582 4.693283 CGGCAGACAGGTTATCTGAAATA 58.307 43.478 0.00 0.00 45.46 1.40
2550 4593 5.125417 GGTTATCTGAAATAGGCTGCAACAA 59.875 40.000 0.50 0.00 0.00 2.83
2553 4596 8.571336 GTTATCTGAAATAGGCTGCAACAATAT 58.429 33.333 0.50 0.00 0.00 1.28
2632 4677 6.339587 ACCATAACTTACACCACCAAAATG 57.660 37.500 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.198094 TCCCTTCCTTGATGCGTGGA 61.198 55.000 0.00 0.00 0.00 4.02
11 12 1.139654 TCTCATCCCTTCCTTGATGCG 59.860 52.381 0.00 0.00 38.57 4.73
70 71 9.684448 GAGAAAAAGAAAAGAGAAATGGGTAAG 57.316 33.333 0.00 0.00 0.00 2.34
71 72 9.421399 AGAGAAAAAGAAAAGAGAAATGGGTAA 57.579 29.630 0.00 0.00 0.00 2.85
72 73 8.996651 AGAGAAAAAGAAAAGAGAAATGGGTA 57.003 30.769 0.00 0.00 0.00 3.69
73 74 7.904558 AGAGAAAAAGAAAAGAGAAATGGGT 57.095 32.000 0.00 0.00 0.00 4.51
74 75 9.254133 GAAAGAGAAAAAGAAAAGAGAAATGGG 57.746 33.333 0.00 0.00 0.00 4.00
103 104 4.895668 ACACGGGAGGTTACATAGAAAA 57.104 40.909 0.00 0.00 0.00 2.29
162 163 7.454260 AAACAGTAGGGATGAGTCATTTTTC 57.546 36.000 7.16 0.00 0.00 2.29
168 169 4.104102 ACCAAAAACAGTAGGGATGAGTCA 59.896 41.667 0.00 0.00 0.00 3.41
171 172 4.651778 TGACCAAAAACAGTAGGGATGAG 58.348 43.478 0.00 0.00 0.00 2.90
172 173 4.715534 TGACCAAAAACAGTAGGGATGA 57.284 40.909 0.00 0.00 0.00 2.92
174 175 6.800072 TTTTTGACCAAAAACAGTAGGGAT 57.200 33.333 14.50 0.00 43.08 3.85
238 256 3.821033 AGTGAGTCATTGTTTGGGCTAAC 59.179 43.478 0.00 0.00 0.00 2.34
241 259 2.664402 AGTGAGTCATTGTTTGGGCT 57.336 45.000 0.00 0.00 0.00 5.19
263 281 2.158841 CGCCGTGTATTAAGCAACACTT 59.841 45.455 13.49 0.00 43.04 3.16
277 295 2.507110 CTTCCCAGATCACGCCGTGT 62.507 60.000 17.83 4.51 34.79 4.49
281 299 1.112113 TAGTCTTCCCAGATCACGCC 58.888 55.000 0.00 0.00 0.00 5.68
283 301 4.392921 AATGTAGTCTTCCCAGATCACG 57.607 45.455 0.00 0.00 0.00 4.35
284 302 9.262358 GTAAATAATGTAGTCTTCCCAGATCAC 57.738 37.037 0.00 0.00 0.00 3.06
308 326 5.046878 TCAACCCAGAAGAGCGAATTAAGTA 60.047 40.000 0.00 0.00 0.00 2.24
309 327 3.983044 ACCCAGAAGAGCGAATTAAGT 57.017 42.857 0.00 0.00 0.00 2.24
336 354 7.391833 AGCTTCCTCGAACAGAAAGAATTATTT 59.608 33.333 0.00 0.00 0.00 1.40
339 357 5.794894 AGCTTCCTCGAACAGAAAGAATTA 58.205 37.500 0.00 0.00 0.00 1.40
342 360 3.753294 AGCTTCCTCGAACAGAAAGAA 57.247 42.857 0.00 0.00 0.00 2.52
354 372 2.705826 CGCGCATGAAGCTTCCTC 59.294 61.111 23.42 11.15 42.61 3.71
359 377 3.755526 TATGGGCGCGCATGAAGCT 62.756 57.895 40.28 22.77 42.61 3.74
368 386 2.029828 AGAAGAGAATACTATGGGCGCG 60.030 50.000 0.00 0.00 0.00 6.86
451 591 8.470040 TCAAGCTATTCAGATTTTGATTTTGC 57.530 30.769 0.00 0.00 35.27 3.68
475 615 3.153919 TGCCCTTCCACTTGTAAACATC 58.846 45.455 0.00 0.00 0.00 3.06
575 2383 0.965439 TGGCCATTTGCTACCAACAC 59.035 50.000 0.00 0.00 40.92 3.32
668 2478 2.685897 TGTAGAAAGTGCGCCTGTTTTT 59.314 40.909 4.18 0.00 0.00 1.94
669 2479 2.294074 TGTAGAAAGTGCGCCTGTTTT 58.706 42.857 4.18 0.00 0.00 2.43
670 2480 1.961793 TGTAGAAAGTGCGCCTGTTT 58.038 45.000 4.18 0.97 0.00 2.83
671 2481 1.961793 TTGTAGAAAGTGCGCCTGTT 58.038 45.000 4.18 0.00 0.00 3.16
672 2482 1.961793 TTTGTAGAAAGTGCGCCTGT 58.038 45.000 4.18 0.00 0.00 4.00
892 2707 0.665835 CGGAGAGAGTTGGATCGGAG 59.334 60.000 0.00 0.00 0.00 4.63
1032 2848 2.203451 TCGGGATAGGACGGGAGC 60.203 66.667 0.00 0.00 0.00 4.70
1039 2855 1.707427 GGGTAGTACCTCGGGATAGGA 59.293 57.143 18.85 0.00 39.15 2.94
1079 2895 5.607119 AGGCAGAAACAAATACTACAACG 57.393 39.130 0.00 0.00 0.00 4.10
1099 2916 0.816421 AACCACCGTCGAACCAAAGG 60.816 55.000 0.00 0.00 0.00 3.11
1159 2977 6.173339 ACACAGATCAACGTAAGAAATCCAT 58.827 36.000 0.00 0.00 43.62 3.41
1346 3165 3.394836 GAAGAGGAGCTGGCCGGT 61.395 66.667 14.55 6.18 0.00 5.28
1493 3321 0.846427 TCAGGATCCTTGGGCTTGGT 60.846 55.000 13.00 0.00 0.00 3.67
1507 3335 4.087892 GCAGCTTCGGCCTCAGGA 62.088 66.667 0.00 0.00 43.01 3.86
1746 3601 4.093850 CCGGCAATTAAGTACCACTACAAC 59.906 45.833 0.00 0.00 0.00 3.32
1838 3693 1.202830 TCAGGTTACAACAATGGCGGT 60.203 47.619 0.00 0.00 0.00 5.68
1844 3699 6.659242 CCTAATCAACCTCAGGTTACAACAAT 59.341 38.462 9.38 0.00 45.01 2.71
1857 3712 5.352569 CACACTCAACATCCTAATCAACCTC 59.647 44.000 0.00 0.00 0.00 3.85
1895 3750 7.556275 ACCGATTGTACAAATAGATCCACATTT 59.444 33.333 13.23 0.00 0.00 2.32
1985 3840 3.521126 ACCAACTAGTCAATGGAGCAGAT 59.479 43.478 17.24 0.00 37.66 2.90
1995 3850 5.416952 GCTAGTACCACTACCAACTAGTCAA 59.583 44.000 0.00 0.00 42.16 3.18
2001 3856 2.496470 GCTGCTAGTACCACTACCAACT 59.504 50.000 0.00 0.00 0.00 3.16
2010 3865 1.550524 CAAGGACAGCTGCTAGTACCA 59.449 52.381 15.27 0.00 0.00 3.25
2012 3867 1.550976 ACCAAGGACAGCTGCTAGTAC 59.449 52.381 15.27 4.06 0.00 2.73
2014 3869 1.827969 CTACCAAGGACAGCTGCTAGT 59.172 52.381 15.27 7.76 0.00 2.57
2015 3870 2.103373 TCTACCAAGGACAGCTGCTAG 58.897 52.381 15.27 4.62 0.00 3.42
2017 3872 1.277557 CTTCTACCAAGGACAGCTGCT 59.722 52.381 15.27 0.00 0.00 4.24
2019 3874 3.511934 ACTACTTCTACCAAGGACAGCTG 59.488 47.826 13.48 13.48 0.00 4.24
2022 3877 5.010719 TCACAACTACTTCTACCAAGGACAG 59.989 44.000 0.00 0.00 0.00 3.51
2023 3878 4.897076 TCACAACTACTTCTACCAAGGACA 59.103 41.667 0.00 0.00 0.00 4.02
2024 3879 5.464030 TCACAACTACTTCTACCAAGGAC 57.536 43.478 0.00 0.00 0.00 3.85
2025 3880 5.105877 CGATCACAACTACTTCTACCAAGGA 60.106 44.000 0.00 0.00 0.00 3.36
2027 3882 5.950883 TCGATCACAACTACTTCTACCAAG 58.049 41.667 0.00 0.00 0.00 3.61
2030 3885 4.352887 GCTCGATCACAACTACTTCTACC 58.647 47.826 0.00 0.00 0.00 3.18
2031 3886 4.096682 AGGCTCGATCACAACTACTTCTAC 59.903 45.833 0.00 0.00 0.00 2.59
2032 3887 4.096532 CAGGCTCGATCACAACTACTTCTA 59.903 45.833 0.00 0.00 0.00 2.10
2033 3888 3.093057 AGGCTCGATCACAACTACTTCT 58.907 45.455 0.00 0.00 0.00 2.85
2034 3889 3.182967 CAGGCTCGATCACAACTACTTC 58.817 50.000 0.00 0.00 0.00 3.01
2035 3890 2.563179 ACAGGCTCGATCACAACTACTT 59.437 45.455 0.00 0.00 0.00 2.24
2036 3891 2.171840 ACAGGCTCGATCACAACTACT 58.828 47.619 0.00 0.00 0.00 2.57
2037 3892 2.656560 ACAGGCTCGATCACAACTAC 57.343 50.000 0.00 0.00 0.00 2.73
2078 3935 3.157087 GCCTCCTTGACAAAATGGAAGA 58.843 45.455 4.73 0.00 0.00 2.87
2084 3941 0.251341 AGCCGCCTCCTTGACAAAAT 60.251 50.000 0.00 0.00 0.00 1.82
2092 3949 2.976490 ATTCTGCAGCCGCCTCCTT 61.976 57.895 9.47 0.00 37.32 3.36
2284 4283 0.524816 GTTGCCTGCTGCGATCATTG 60.525 55.000 0.00 0.00 45.60 2.82
2318 4317 4.510167 AATGGGGTTGTCTCTAAGATGG 57.490 45.455 0.00 0.00 0.00 3.51
2324 4335 6.131264 TCGTAGATAAATGGGGTTGTCTCTA 58.869 40.000 0.00 0.00 0.00 2.43
2335 4346 6.910536 AGAGCTTGTTTCGTAGATAAATGG 57.089 37.500 0.00 0.00 35.04 3.16
2351 4362 5.423015 TCTATAAAGCAGGACAAGAGCTTG 58.577 41.667 8.60 8.60 46.95 4.01
2414 4429 1.135315 CCACAGTGTGCCATTGTATGC 60.135 52.381 18.21 0.00 32.72 3.14
2430 4445 0.899720 GATGGTCCGTACCTTCCACA 59.100 55.000 0.00 0.00 46.91 4.17
2435 4450 4.715297 AGTTATTCTGATGGTCCGTACCTT 59.285 41.667 0.00 0.00 46.91 3.50
2466 4481 9.496710 TTTCCCCAGTTATTCTGATACTAGTAA 57.503 33.333 6.70 0.00 46.27 2.24
2512 4555 0.905357 ATAACCTGTCTGCCGCTCTT 59.095 50.000 0.00 0.00 0.00 2.85
2537 4580 8.413309 AACAATGATATATTGTTGCAGCCTAT 57.587 30.769 14.98 0.00 46.67 2.57
2539 4582 6.720112 AACAATGATATATTGTTGCAGCCT 57.280 33.333 14.98 0.00 46.67 4.58
2602 4647 8.480133 TGGTGGTGTAAGTTATGGTTTTTATT 57.520 30.769 0.00 0.00 0.00 1.40
2609 4654 6.071984 TCATTTTGGTGGTGTAAGTTATGGT 58.928 36.000 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.