>input_sequence_73295
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---------------ATGGCCGCCGAGGAGGCCGCCAAGCCGGCCACGCTCCCGTCCTATCCCGAGGTACTACCCGAGCC
GCCGTTTCTTGCGGCGTTG-TAGTATTTGTTTCTGC-CTTTGGTTCGACGGTGGTTGCCAAGATTTACATTTTGTTGGGT
TGAGGTGGTGCCGGAGATGGATTTCTTACGTTGATCTGTGTTTTT-TTGGACGAGTTCAGATGATACTGGCGGCCATCGC
GGCGCTCAACGACAAGAACGGGTCGAACAAGTCCGCCATCTCCAAGCACATCGAGGGCAAGTACGGCGACCTCCCCAAGG
AGCACGCGGCGCTGCTGACGGCGCATCTGGTGCGCATGAAGGAGACCGGCCAGCTCCTCTTCCTCAAGAACAACTACTTC
CGCACCGACGCGCCGGACGCCCCGCCCAAGCGGGGCCGCGGCCGCCCGCGCAAGCCCATTGACCCCAACGCGCCGCC---
------CAAGCCCGCCTCCCCGCGCCCCCGCGGACGCCCGACCAAGCCCAAGGATCCTGAGGCCGAAGCTGCCAAT----
-----------------------CCGCCCAAGAAGGCCAAGACCGCTCCTACCCCTGCCGTCGACGGATCCGCCAAGCGC
GGCCGCGGCCGTCCGCCCAAGGCACGCCCCGCCGAGCCGGCGGCGGCCTGA-----------------------------
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>chr5B_1_TraesCS5B01G395400
GGGCTAATCCACGCATCAAGGAAGGGATGAGATCATAGATGTCAATGTATAAATAGGCTATATAACTTTACTTACCCATT
TCTCTTTTCTTTTTCTCTTTCTTTTTTCTATGTAACCTCCCGTGTTACACTTGTAACTTACTGGATTCCCTAATGATTAA
TGGAAAAATGACTCA--------------TCCCTACTGTTTTTGGTC---AAAAAAGAAAACAAAATGATAATTCTTTTG
TTTTGTTTCAAATTTGTTAGCCCAAACAATGACTCACTACAAGTGTTGCTTAATACACGGCGTGATCTGGGAAGACTACA
TTATTTACTTAATTCGCTCTTCTGGGTTGAAAAAAATAATTCTTTCTGTTCGAGGAAGCTTCATGCGCGCCCATAGTATT
CTCTTCTTTAATGTACTAGTACTGTATGCAAAAATAATATTCTCTTC---------------------------------
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---------TATAATGTACTAGTACTATATGCAAAATCAAAATCTGAATAGCTTGATGTTTACAAGTG----GAAGGGCA
TTTC-----AAGAAATTTCAAATGGCACCGTGTGCACTCATGGGACAAATATT---------------------------
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--------------------------------GAATGTATTTTTCTTGAGTTCATATATTGAGTGTTGGTAGCAAATGGC
CAGCACAAGACGTGTGGATCTTTTGAACAGCTTGCC--TTTCACCAAAAACCAGGCGCACTTCACTCGCAAAAAAAAAAA
AACAGGCGCACTTTCTACAAAA-----AAACAAAAAAGGCAGCTGCACACATGACCACGCATAAAGAACTCCTGACTCGC
CAGGTCACCGATCCGTGTGCTCCCATCCTCTACCGTCCGATTAGGCCAGCCGGAGCAATCTCATCCGTCCATCCTCGTTA
CCATCGCCACCATGCGATCCATCCATCTCACTCTCGCTCACTCCTCTTCAGTTCTTATCCGGAGTACTCCGATCCAACTC
TCTCCGCTCGCACGCAGCCGCCGCAGACCTCCTCTCGGGAAGAAAAATTCCCCACCTCTC-CTCCCTTTCCCATCCTCGT
CCCCGCCGCTTCGCCATGGCCGCCGAGGAGGCCGCCAAGCCGGCCACGCTCCCGTCCTATCCCGAGGTACTACCCGAGCC
GCCGTTTCTTGCGGCGTTG-TAGTATTTGTTTCTGC-CTTTGGTTCGACGGTGGTTGCCAAGATTTACATTTTGTTGGGT
TGAGGTGGTGCCGGAGATGGATTTCTTACGTTGATCTGTGTTTTT-TTGGACGAGTTCAGATGATACTGGCGGCCATCGC
GGCGCTCAACGACAAGAACGGGTCGAACAAGTCCGCCATCTCCAAGCACATCGAGGGCAAGTACGGCGACCTCCCCAAGG
AGCACGCGGCGCTGCTGACGGCGCATCTGGTGCGCATGAAGGAGACCGGCCAGCTCCTCTTCCTCAAGAACAACTACTTC
CGCACCGACGCGCCGGACGCCCCGCCCAAGCGGGGCCGCGGCCGCCCGCGCAAGCCCATTGACCCCAACGCGCCGCC---
------CAAGCCCGCCTCCCCGCGCCCCCGCGGACGCCCGACCAAGCCCAAGGATCCTGAGGCCGAAGCTGCCAAT----
-----------------------CCGCCCAAGAAGGCCAAGACCGCTCCTACCCCTGCCGTCGACGGATCCGCCAAGCGC
GGCCGCGGCCGTCCGCCCAAGGCACGCCCCGCCGAGCCGGCGGCGGCCTGACTCGTCCTCCGCTCCACCTGGGCGCGGCT
GTCGGTTTCTCTGGATCACCCGGGTGCTGGTTGGTTAATCTTGTTCTGTAGTGCTTAATAATTGTCGGTCGCTCTCTTTA
GTTGTAGTGGTACTTAATTGCCGGGATCGCCGTGTCGTGATTAGGAGGGTTTAATGTGTCGTCGTCGCCATTGCTGTCGT
GGTCGTAGCGCTACCGCCATTGTTGTAACCTGAGGTTGATTAGGATGTTGAGTGTGCTGATTGTTCAGCAAATGTGGATC
TATTTGTACAATCGGTGGATGGATTAACTGTTTTGATTAGTCATGGTGTTCATGTCCTCCTCAGTTTGCTGTACCAGGTA
TCTGCTCCATTGACTAGTTGGTAGTGGTACTAGCAGCTGTCCTTGGTAGAAGTAG--TTGTGATCGAGCCTGTTAAGATT
CGTCAGTAATGATCTCTTCCATTTTGTCAAGGAGGCGGCTGCAGAATGG-------------------------------
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-----------CTGTGATGGGCT-----------GGGACTGTACCCTTGATCCTCCTATGACGAACTGGTGTCTGCAACT
CGCTGGCCTGGTACCTGGCGTGTTTTAAGTCAGTTTGAGGGATGG-TATCTCCTTCAAGCGCCCTCTCGTCCAATCTAGT
CACTGTCAGTCGAGTACCACAACACAAT--------CTTGAGCAATGATCGCAGCAGGCAACATGCTCGTTTGACTC---
---------CATCTTAGAGACAACCCCATTTATCTACGAAACAAGCTCTTGTCCTGCTTTATAGATAAAACACGAACCAA
AATACATGGTCG----ATATAAGGTTGGGCATACAATGGCACACTGTGGAAGGTACGGACCATCAGAATAACTGAGAAAA
TTACTAGTATCAGAATAACTGGGG----------------------------AAAAATGAGTCATATACACTATAAGAGC
GGCAGACAGGTTATCTGAAATAGGCTGCAACAATATATCATTGTTTTATCTTCAAACCATTT--TTTATATTACAAAGTA
ATGAGAAATAAAAACCATAACTTACACCACCAAAATGAGAT
>chr5A_1
GGGCTAAGCCAAGCATCAAGGAAGGGATGAGATCATAGATTACAGTGTAAAAATAGGCCATATAACTTTAT----CCATT
TCTCTTTTCTTTTTCTCTTTCTTATTTCTGTGTAACCTACCGTGTTACACTTGTAACTTACTGGACTCCCTAATGATTAA
TGAAAAAAAGAGACTCACATTAGGGAATTTCCCCACAGTTTTTGGTCAAAAAAAAAGAAAAGAAAATGACAAGTCTTTTG
TTTTGTTTCATTATTTTT-GCCCAAACAATGACCCACTACGAGTGTTGCTTAATGCACCGTCTGATCTGAGAAGAATACA
TTATTGGCTTAATTCGCTTTTCTGGGTTGCAAACAAAAAATCTTTCTGTTCAAGGAGGCTTCATGTGCGCCCATAGTATT
CCCTTCTACTCCCTCCATCCACAAATATACGTCTTTTTAGAGATTACAATAAGTGACTACATACGGAGCAAAATGAGTGA
ATCTACACTCTAAAATATGTCTACATACATCCGTATGTTATAGTCCATTTAAAATGTCTAAAAAGATCTATATTTAGAAA
CGGAGGGAGTATAATGTAGTACCG---TATCCAAAATCAAGATCTAAATAGCTTCATGTTTACAAGTGACAGGAAGGGCA
TTTC-----GAGAAATTTCAAATGGCACCATTTACCCTCATGGGACAAATATTGAATGTATTTTTCTTTTTTTTTGAATG
TTGGCAGGAGGACTGCCAAATTCATTGATCAGAAGAGGAGTAACAAGAACATCTCCAAAGGAGGAAAGCACCGCAAAAGG
GCTAGTGCAGAAAGAAAAGAAAGAAAACAGAAACCCGCCGGCACCAACACAAACCCAAGATCCGCCAGCAACCATGCACA
CCATCGGAATCCATCGTCGAGGCCTCCAAGATGACGCCTCCAAGAAGGAAGTGGTATCGAGAACACCGCCGTCATCCGAT
CTAGCTCCGCCAGATCTTAGGTTTTCACCCGGAGACCTCAGCCATGAGGCAGGAAGAGCAATGAGCTCCACGGCGGCACT
TCCAAGGAAGAAGACGACATCCATAGATGCCGTTACCGTCGGCACCGACGAAGTCGATGCAGGATTTTCATCCGGAGCTA
AGCCTTCCGCCAATCATCCAGGATCCGAGACCAAATCAGCACCACAAGGCAGAACAAGGCCAAGCACACACTACCAGACA
ACGGGATAGTCGCCGCCGCACGCAGAACCTAGGCAAGCACACGTCAACCTGGCCGGTCCGCACCGCCGCTCGCAGGACCT
GGGCGAACCCAATCGACTCCGGCCGTCCTTCAGCTCCGTGCGCAGACCTGGGCGAGACTTCGCACCGCAGCGCACCAGGA
GAGACTGAAGTAGAACCATCGCTGACCGGCCCGCACCGCAGCGCGTCGAAACAGAGCAAAAACCAGGCCAAAACTTAACG
TGCTCGCACCGCCACGCGCAAGGACCGGACCTCCGTGCTGGATCTGGTCTGCCCGAGCTTCCTCAAGCACCAACATGTTG
GACGGCACCCCTGCTCCAGGAGCTGGGCGTGCACACGCTTGCAAGGGGAAACCACCAGCATCCACCGGCACCACCGCTCC
TGCCTCTCCAATCCAGGTGCCACCGGCCATCGAGATCTGGGCGCAGGACCGCCCAAAATCAGATCGGGCTTGGAGCCCCT
CACCGCCGTGTCGCCCCAAACTCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGCTAGCGCGCGAGCCCCCGCGCCACCTTGGCCCCGTCCCGCGCCATCCAAGGCAGCAGCCGCGCCCG
CGCCGTCCGGCAGCCGCCGCGCCAAGCTCGTGGACGAAGAACAGGAAAGGGCCCCGCCGCCACCTTCACAGGAGCCGGCA
CGGACTTCGCCGGCTGCTCCTCCGGCAGCGGCGAGCCGAGGGAAGGGAGGAAAGGGAGGAGCGGCGCCTCGATCTAGGGT
TTCCCCGTGTCGCCAGGGAAGGCGACGCCAGGGAATGTATTTTTCTTGAGTTAATATATTGAATGTTGGTAGCAAATGGC
CAGCACAAGACGTGTGGATCTTTTGAACATCTTTGCCTTTTCACCAAAAACCAGGCGCACTT------------------
-------------TCTACAAAC-----AAACAAAAAAGGCAGCCGCACACATGACCACGCATAAAGAAGTCCTGACTCGC
CACGTCACCGATCCGCGTGCTCCCATCCTCTACCGTCCGATTAGGCCAGCCGGAGCAATCCCGTCCGTCCATCCTCGTTA
CCATCGCCACCATGCGATCCATCCATCTCACTCTCCCTCACTCCTCTTCAGTTCTTATCCGGAGTATTCCGATCCAACTC
TCCCCGCTCGCACGCAGCCGCCGCAGACCTCCTCTCGGGAAGAAAAATTCCCCACCTCCCTCTCCCTTTCCCCTCCCCGT
CCCCGCCGCTTCGCCATGGCCGCCGAGCAGGTCGCCAAGCCGGCCACCCTCCCGCCCTATCCCGAGGTACTACCCGAGCC
GCCGTTTCTTGCGGTGTTTTTAGTATTTGTTTCTCGTCTTTGGTTCCACGGTGGTTGCCAAGATTTACATTTTGTTGGGT
TGAGGTGGTGCCGGAGCTGGATTTCTTACGTTGATCTGTGTTTTTGTTGGACGAGTTCAGATGATACTGGCGGCCATCGC
GGCGCTCAACGACAAGAACGGGTCGAACAAGTCCGCCATCTCCAAGTACATCGAGGGCAAGTACGGCGACCTCCCCAAGG
AGCACGGCGCGCTGCTGACGGCGCATCTGGTGCGCATGAAGGAGTCCGGCCAGCTCTTCTTCCTCAAGAACAACTACTTC
CGCACGGACGCGCCGGACGCCCCGCCCAAGCGGGGCCGCGGCCGCCCGCGCAAGCCCATAGACCCCAACGCGCCGCCGCC
GCCGCCCAAGTCCGCGTCGCCGCGCCCCCGCGGACGCCCCGCCAAGCCCAAGGACCCCGAGGCCGAGGCCGCCAACCCGC
CCAAGAAGGCCAAGACCGTCAACCCGCCCAAGAAGGCCAAGACCGCTCCCGCCCCTGCCGTCGACGGATCCGCCAAGCGC
GGCCGCGGCCGTCCGCCCAAGGCGCGCCCCGCCGAGCCGGCGGCGGCCTGACTCGTCCTCCG-TCCGCCTGGGCGCGGCC
GTCGGTTTCTCTGGATCACCCGGGTGCTCGTTAG-TAATCTTGTTCTGTAGTGCTTAATAATTGTCGGTCGCTCTCTTTA
ATTGTAGTGGTACTTAATTGCCGGGATCGCCGTGTCGTGATTAGGAGGGTTTGATGTGTCGTCGTCGCCGTTGCTGTCGT
GGTCGTAGCGCTGCCGCCGTTGTTGTAACCTAAGGTTGATTAGGATGTTGAGCGTGCTGATTGTTCAGCTATTGTGGATC
TATTTGTACAATCGGTGGATGGATTAACTGTGTTGGTTAGTGATGGTGTTCATGTCCTCATCAGTTTGCTGTACCAGGTG
TCCACTCCAGTGACTGGTTGGTAGGGTTTTTTGTAGTCTATTTACACTACC-TAG--TTGTGATCGAGCCTGTTAAGATT
TGTCAGTAATGATCACTTGCGA-TTGTGGAGGAGGCAGCTGCAGAAAATATGATTAATTCACTAAGCAGCAAGTTGGGTT
TTGAGGTGGATGATGTGAACTGGCCGAAGAAAAATCGATTTCGTCGTGACAGTCGATGAAATAACAAGTGAAAATGAGGA
CCGAAGGAGCTCTGTGATGGGCTGCCGAGGCGCTGGGACTGTACCCTT-ATCCTCCTATGACGAACTGGTGTCTGCAACT
CGCTGGCCTGGTACCTGGCGTGTTTTAAGTCAGTTTGAGGGATGAATATCTCCTTCGAGCGCCCTCTCGCCCAATAGTCA
CTGTGTCAGTTGAGTACCACAAATCCACAATACAACCTTGAGGAATGATCGCAGCAGGCAACATGCTTGTTTGACTTGCA
GCTGAGGTGCATCTCAGAGACAACCTCATTTATCTACG-----------------------------AAACACGAACCAA
AATACATGGTCGGACGATATAAGGTTGGACATACAATGGCACACCGTGGGAGGTACGGA-C-------------------
----------------------------------TATCAGAATAA-----------------------------------
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>chr5D_453
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-------------------------------CAAAATCAAAATCTGAATAGCTTCATGTTTACAAGTGACATGGTGGGTA
GGCATTTCTAAGAAATTTCAAATGCCACGGTGTGCACTCATGGGACAAATATT---------------------------
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--------------------------------GAATGCATTTTTCTTGAGTTCATATATTGAATGTTGCTAGCAAATGGC
CAGCACAAGACGTGTGGATCCTTTGAACAGCTTGCC--TTTCACCAAAAC------------------------------
--CAGGCGCACTTTCTATAAAAAAAAAAAACAAAAAAGGCAGCTGCACACATGACCACGCATAAAGAACTCCTGGCTCGC
CAGGTCACCGATCCGTGTGCTCCCATCCTCTACCGTCCGATTAGGCCAGCCAGAGCAATCTCATCCGTCCATCTTCATTA
TCATCGCCACCATGCGATCCATCCATCTCACTCTCGCTCACTCCTCTTCAGTTCTTATCCGGAGTATTCCGATCCAACTC
TCTCCGCTCGCACGCAGCCGCCGCAGACCTCCTCTCGGGAAGAAAAATTCCCCACCTCTC-CTCCCTTTCCCCTCCTCGT
CCCCGCCGCTTCGCCATGGCCGACGAGCAGGTCGCCAAGCCGGCGAGCCTCCCGCCATATCCCGAGGTACTACCGGAGCC
GCCGTTTCTCGCTGTGTTG-TAATATTTGTTTCTGG-CTTTGGTTCGACGGTGGTTGCCAAGATTTACATTTTGTTGGGC
TGAGGTGGTGCCCGAGCTGGATTTCTTACGCTGATCTGTGTTTTTTTTGGACGAGTTCAGATGATACTGGCTGCCATCGC
GGCGCTCAACGACAAGAACGGGTCGAACAAGTCCGCCATCTCCAAGCACATCGAGGGCAAGTACGGCGACCTCCCCAAGG
AGCACGCTGCGCTGCTGACGGCGCATCTGGTGCGCATGAAGGAGTCCGGCCAGCTCCTCTTCCTCAAGAACAACTACTTC
CGCACCGACGCGCCGGACGCCCCGCCCAAGCGGGGCCGCGGCCGCCCGCGCAAGCCCATTGACCCCAACGCGCCGCC---
------CAAGCCCGCCTCGCCGCGCCCCCGCGGACGCCCGGTCAAGCCCAAGGACCCCGAGGCCGAGGCCGCCAACCCGC
CT---------------------------AAGAAGGCCAAGACCGCTCCCGCCCCTGCCGTCGACGGATCCGCCAAGCGC
GGCCGCGGCCGTCCGCCCAAGGCGCGCCCCGCCGAGCCGGCGGCGGCCTGACTCGTCCTCCG-TCCACCTGGGCGCGGCT
GTCGGTTTCTCTGGATCACCCGGGTGCTGGCTGGTTAATCTTGTTCTGTAGTGCTTAATAATTGTCGGTCGCTCTCTTTA
ATTGTAGTGGTACTTAATTGCCGGGATCGCCGTGTCGTGATTAGGAGGGTTTAATGTGTCGTCGTCGCCATTGCTGTCGT
GGTCGTAGCGCTGCCGCCGTTGTTGTAACCTAAGGTTGATTAGGATGTTGAGTGTGCTGATTGTTCAGCTAATGTGGATC
TATTTGTACAATCGGTGGATGGATTAACTGTGTCGGTTAGTCATGGTGTTCATGTCCTCCTC---------TACCAGGTG
TCTGCTCCAGTA----------------TTTTGTAGTCTACTCTACCTAGTTGTGAATTGTGATCGAGCCTGTTAAAATT
CGTTGGTAATGATCACTTCCGTTTTGTCGAGGAGGCGGCTGCAGAATGG-------------------------------
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-----------CTGTGATGGGCTGCCGAGGGGCTGGGACTGTACCCTTGATCCTCCTATGACGAACTGGTGTCTGCAACT
CGCTGGCCTGGTACCTGGTGTGTTTTAAGTCAGTTTGAGGGATGG-TATCTCCTTCAAGCGCCCTCTCGTCCAATCTAGT
CACTGTCAGTCGAGTACCACAACACAAT--------CTTGAGGAATAATCGCAGCAGGCAACATGCTCGTTTGACTTGCA
GCTGAGGTGCATCTCAGAGGCAACCTCATTTATCTACGAAATAAGCTCTTGTCCTGCTTTATAGATAAAACACGAACCAA
AATACATGGTCGAACCATATAAGCTTGGACATACAATGGCACACCGTGGGAGGTACAGA-CATCAGAATAACTGAGAAAA
ATACTAGTATCAGAATAACTGAGAAAAATACTAGTATCAGAATAACTGGGATAAAAATGAGTCATATACACTATTAGAGC
GGCAGACAGGTTATCTGAAGTGGGCTGCAACAGTAGATCATTGTTTTATCTTCAAACCATTTTTTTTATATTACAAAGTA
ACGAGAGATAAAA-CCATATTTTACACCACCAAAATCAGAT
>SNPs
-------S---S----------------------------SS--S----S--------S-----------SSSSS-----
-----------------------S-----S--------S--------------------------S--------------
--S-----S--SS-S------------------S--S------------------------S-------S--S-------
----------SSS--S--S--------------S------S-------------S---S-SS-------S-----S----
-----SS-----------S----------S---S--S--S-----------S----S--------S--------------
-S-----SSSSSS-S-SSSS--SSSSSSSSSSSS-SS--SSSSS-S----------------------------------
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------------------S--SSSSSS---S-----------------------S-------------------------
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--------------------------------------------------------------S-----------------
--------------------------------------------------------------SSSSSSSSSSSSSSSSSS
SS------------------------------------------------------------------------------
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------------------------------------------------------------------S-------------
------------------------------------------------------------------------S-------
---------------------------S---S---------------S------S-------------------------
--------------S--------------------S--------------------------------------------
----------------S---------------------------------------------------------------
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-------S------------------------------------S-----------------------------------
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------------------S---------------------S-------------S--S--------S--S-----S----
-------------------------------------------------SS-----------------------------
-----------------------S--------------------------------------S-----------------
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S-------------------------------------------------------------------------------
------------S-----S------------S-------------------------------------S----------
-------------------------------S---S-------------------------------------------S
---------S-----S--------S-S-SS-S-S--SSSS-S--SSSSSSSS----------------------------
--------------S-----S-------S---------------------------------------------------
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------------------------------------------S---------------------------------S---
--------------S----------S---------------S--------------------------------------
----------------------------S---------------S----S---------S--------------------
S--------------------S-S--------------------------------------------------S-----
-------------------S-S----------S--S--------------------------------------------
-S----S------S-----SS---------------S----
>forward_2464
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--------------------------------------------CAAAAACCAGGCGCACTTCA----------------
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>reverse_3941
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--------------------ATTTTGTCAAGGAGGCGGCT----------------------------------------
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