Multiple sequence alignment - TraesCS5B01G382900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G382900 chr5B 100.000 2792 0 0 1 2792 561693130 561695921 0.000000e+00 5156.0
1 TraesCS5B01G382900 chr5B 95.601 591 13 3 1207 1797 555236273 555235696 0.000000e+00 935.0
2 TraesCS5B01G382900 chr5B 88.685 654 38 13 1 653 561713188 561713806 0.000000e+00 765.0
3 TraesCS5B01G382900 chr5B 92.857 224 16 0 904 1127 555236658 555236435 2.680000e-85 326.0
4 TraesCS5B01G382900 chr5B 96.241 133 5 0 2647 2779 467139698 467139566 4.680000e-53 219.0
5 TraesCS5B01G382900 chr5B 91.045 67 3 3 2648 2713 373527375 373527311 1.380000e-13 87.9
6 TraesCS5B01G382900 chr5B 94.545 55 3 0 2568 2622 563360434 563360380 4.950000e-13 86.1
7 TraesCS5B01G382900 chr5D 92.180 665 35 8 3 653 458459127 458459788 0.000000e+00 924.0
8 TraesCS5B01G382900 chr5D 96.491 456 6 3 1205 1660 458462624 458463069 0.000000e+00 745.0
9 TraesCS5B01G382900 chr5D 91.515 495 24 7 170 653 458482885 458483372 0.000000e+00 665.0
10 TraesCS5B01G382900 chr5D 84.921 378 44 8 1255 1628 468357235 468356867 1.220000e-98 370.0
11 TraesCS5B01G382900 chr5D 92.411 224 11 2 904 1127 458462228 458462445 5.810000e-82 315.0
12 TraesCS5B01G382900 chr5D 94.737 57 3 0 2566 2622 397612397 397612453 3.830000e-14 89.8
13 TraesCS5B01G382900 chr3D 90.896 681 43 10 1893 2562 95482766 95483438 0.000000e+00 896.0
14 TraesCS5B01G382900 chr3D 84.091 572 65 14 3 552 359092715 359092148 1.900000e-146 529.0
15 TraesCS5B01G382900 chr5A 92.632 475 23 6 192 663 576340174 576340639 0.000000e+00 673.0
16 TraesCS5B01G382900 chr5A 88.608 553 44 10 2020 2567 139489021 139488483 0.000000e+00 654.0
17 TraesCS5B01G382900 chr5A 96.528 144 4 1 1893 2035 139489612 139489469 1.290000e-58 237.0
18 TraesCS5B01G382900 chr5A 96.241 133 5 0 2647 2779 622229723 622229591 4.680000e-53 219.0
19 TraesCS5B01G382900 chr6A 91.441 444 24 5 2079 2518 183224866 183225299 5.150000e-167 597.0
20 TraesCS5B01G382900 chr6A 97.761 134 2 1 1893 2025 183224740 183224873 2.160000e-56 230.0
21 TraesCS5B01G382900 chr6A 94.545 55 3 0 2568 2622 448192238 448192292 4.950000e-13 86.1
22 TraesCS5B01G382900 chr6A 88.889 63 4 2 2508 2567 183226300 183226362 1.070000e-09 75.0
23 TraesCS5B01G382900 chr6A 100.000 28 0 0 2534 2561 183225928 183225955 5.000000e-03 52.8
24 TraesCS5B01G382900 chr3A 84.397 564 68 8 3 552 478666062 478665505 1.140000e-148 536.0
25 TraesCS5B01G382900 chr3A 92.157 51 4 0 2567 2617 724139723 724139673 3.860000e-09 73.1
26 TraesCS5B01G382900 chr3B 83.019 583 63 17 3 554 465069103 465068526 1.930000e-136 496.0
27 TraesCS5B01G382900 chr3B 92.537 134 10 0 2646 2779 578630842 578630709 2.840000e-45 193.0
28 TraesCS5B01G382900 chr2B 94.697 132 7 0 2648 2779 776409707 776409576 3.650000e-49 206.0
29 TraesCS5B01G382900 chr2B 81.000 200 33 5 221 416 53577756 53577558 1.340000e-33 154.0
30 TraesCS5B01G382900 chr6B 94.681 94 5 0 2685 2778 698050854 698050761 2.240000e-31 147.0
31 TraesCS5B01G382900 chr1D 84.483 116 12 5 2648 2760 439594301 439594189 2.940000e-20 110.0
32 TraesCS5B01G382900 chr1D 90.244 41 4 0 2565 2605 7337496 7337536 1.000000e-03 54.7
33 TraesCS5B01G382900 chr7D 81.102 127 18 5 2637 2760 526381881 526382004 2.290000e-16 97.1
34 TraesCS5B01G382900 chr4B 89.552 67 5 2 2648 2713 124743734 124743799 1.780000e-12 84.2
35 TraesCS5B01G382900 chr4A 94.231 52 3 0 2646 2697 712359584 712359533 2.310000e-11 80.5
36 TraesCS5B01G382900 chr6D 100.000 31 0 0 2571 2601 381350148 381350178 1.080000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G382900 chr5B 561693130 561695921 2791 False 5156.000000 5156 100.00000 1 2792 1 chr5B.!!$F1 2791
1 TraesCS5B01G382900 chr5B 561713188 561713806 618 False 765.000000 765 88.68500 1 653 1 chr5B.!!$F2 652
2 TraesCS5B01G382900 chr5B 555235696 555236658 962 True 630.500000 935 94.22900 904 1797 2 chr5B.!!$R4 893
3 TraesCS5B01G382900 chr5D 458459127 458463069 3942 False 661.333333 924 93.69400 3 1660 3 chr5D.!!$F3 1657
4 TraesCS5B01G382900 chr3D 95482766 95483438 672 False 896.000000 896 90.89600 1893 2562 1 chr3D.!!$F1 669
5 TraesCS5B01G382900 chr3D 359092148 359092715 567 True 529.000000 529 84.09100 3 552 1 chr3D.!!$R1 549
6 TraesCS5B01G382900 chr5A 139488483 139489612 1129 True 445.500000 654 92.56800 1893 2567 2 chr5A.!!$R2 674
7 TraesCS5B01G382900 chr6A 183224740 183226362 1622 False 238.700000 597 94.52275 1893 2567 4 chr6A.!!$F2 674
8 TraesCS5B01G382900 chr3A 478665505 478666062 557 True 536.000000 536 84.39700 3 552 1 chr3A.!!$R1 549
9 TraesCS5B01G382900 chr3B 465068526 465069103 577 True 496.000000 496 83.01900 3 554 1 chr3B.!!$R1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
426 463 0.035598 TCGGCCGAGGATAGAGAGAG 59.964 60.0 27.28 0.0 0.0 3.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1845 4306 0.107703 CAGAAGCAAGGCCGGATACA 60.108 55.0 5.05 0.0 0.0 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 1.267121 AGAGCTCGCCTGTTTTCCTA 58.733 50.000 8.37 0.00 0.00 2.94
168 169 1.075542 CCGCACATGTCACACGTAAT 58.924 50.000 0.00 0.00 0.00 1.89
181 182 7.959733 TGTCACACGTAATCTAATTTGATCAC 58.040 34.615 2.80 0.00 0.00 3.06
417 454 3.219928 GATCTGCTCGGCCGAGGA 61.220 66.667 46.06 43.67 42.19 3.71
426 463 0.035598 TCGGCCGAGGATAGAGAGAG 59.964 60.000 27.28 0.00 0.00 3.20
447 484 4.077188 GCAGGCAAGCACGACGAC 62.077 66.667 0.00 0.00 0.00 4.34
480 517 3.864686 GTTGCGCCGCATCGTCAT 61.865 61.111 14.63 0.00 38.76 3.06
501 550 0.389948 GTCATCGTCGGAAGTTGCCT 60.390 55.000 0.00 0.00 0.00 4.75
635 684 2.806608 ACGTCTACAACACCGTGATT 57.193 45.000 5.28 0.00 31.43 2.57
689 2947 3.018428 GCGCGTGCTGTGTTTGTG 61.018 61.111 15.02 0.00 38.39 3.33
708 2966 7.812669 TGTTTGTGGTCTTCTTCTTTTCTTTTC 59.187 33.333 0.00 0.00 0.00 2.29
711 2969 8.122472 TGTGGTCTTCTTCTTTTCTTTTCTTT 57.878 30.769 0.00 0.00 0.00 2.52
712 2970 8.585018 TGTGGTCTTCTTCTTTTCTTTTCTTTT 58.415 29.630 0.00 0.00 0.00 2.27
713 2971 9.424319 GTGGTCTTCTTCTTTTCTTTTCTTTTT 57.576 29.630 0.00 0.00 0.00 1.94
774 3032 1.760029 TGGAACCTTGGGCTGTTTTTC 59.240 47.619 0.00 0.00 0.00 2.29
782 3040 0.664466 GGGCTGTTTTTCGAGCAAGC 60.664 55.000 0.00 0.00 36.90 4.01
784 3042 1.664302 GGCTGTTTTTCGAGCAAGCTC 60.664 52.381 11.94 11.94 36.90 4.09
785 3043 1.002468 GCTGTTTTTCGAGCAAGCTCA 60.002 47.619 20.75 6.51 42.86 4.26
786 3044 2.351157 GCTGTTTTTCGAGCAAGCTCAT 60.351 45.455 20.75 0.00 42.86 2.90
787 3045 3.231965 CTGTTTTTCGAGCAAGCTCATG 58.768 45.455 20.75 6.73 42.86 3.07
788 3046 2.030893 TGTTTTTCGAGCAAGCTCATGG 60.031 45.455 20.75 6.06 42.86 3.66
789 3047 1.167851 TTTTCGAGCAAGCTCATGGG 58.832 50.000 20.75 5.72 42.86 4.00
790 3048 1.308069 TTTCGAGCAAGCTCATGGGC 61.308 55.000 20.75 10.42 42.86 5.36
791 3049 3.207669 CGAGCAAGCTCATGGGCC 61.208 66.667 15.67 0.00 42.86 5.80
792 3050 3.207669 GAGCAAGCTCATGGGCCG 61.208 66.667 15.67 7.14 42.31 6.13
793 3051 3.984193 GAGCAAGCTCATGGGCCGT 62.984 63.158 15.67 0.00 42.31 5.68
794 3052 3.818787 GCAAGCTCATGGGCCGTG 61.819 66.667 20.02 20.02 0.00 4.94
795 3053 3.818787 CAAGCTCATGGGCCGTGC 61.819 66.667 21.22 10.48 0.00 5.34
799 3057 4.758251 CTCATGGGCCGTGCGACA 62.758 66.667 21.22 2.62 0.00 4.35
800 3058 4.758251 TCATGGGCCGTGCGACAG 62.758 66.667 21.22 0.00 0.00 3.51
807 3065 4.436998 CCGTGCGACAGGAGGTCC 62.437 72.222 0.00 0.00 43.95 4.46
809 3067 2.044555 CGTGCGACAGGAGGTCCTA 61.045 63.158 0.00 0.00 46.65 2.94
810 3068 1.592400 CGTGCGACAGGAGGTCCTAA 61.592 60.000 0.00 0.00 46.65 2.69
811 3069 0.606604 GTGCGACAGGAGGTCCTAAA 59.393 55.000 0.00 0.00 46.65 1.85
812 3070 0.895530 TGCGACAGGAGGTCCTAAAG 59.104 55.000 0.00 0.00 46.65 1.85
813 3071 1.183549 GCGACAGGAGGTCCTAAAGA 58.816 55.000 0.00 0.00 46.65 2.52
814 3072 1.135333 GCGACAGGAGGTCCTAAAGAG 59.865 57.143 0.00 0.00 46.65 2.85
815 3073 2.724454 CGACAGGAGGTCCTAAAGAGA 58.276 52.381 0.00 0.00 46.65 3.10
837 3095 4.455137 CCCCCTCCTCCCACCCAT 62.455 72.222 0.00 0.00 0.00 4.00
841 3099 1.082879 CCCCTCCTCCCACCCATATAT 59.917 57.143 0.00 0.00 0.00 0.86
842 3100 2.320986 CCCCTCCTCCCACCCATATATA 59.679 54.545 0.00 0.00 0.00 0.86
844 3102 3.385115 CCTCCTCCCACCCATATATACC 58.615 54.545 0.00 0.00 0.00 2.73
845 3103 3.385115 CTCCTCCCACCCATATATACCC 58.615 54.545 0.00 0.00 0.00 3.69
846 3104 3.014110 CTCCTCCCACCCATATATACCCT 59.986 52.174 0.00 0.00 0.00 4.34
847 3105 3.411746 TCCTCCCACCCATATATACCCTT 59.588 47.826 0.00 0.00 0.00 3.95
848 3106 3.780850 CCTCCCACCCATATATACCCTTC 59.219 52.174 0.00 0.00 0.00 3.46
849 3107 3.780850 CTCCCACCCATATATACCCTTCC 59.219 52.174 0.00 0.00 0.00 3.46
850 3108 2.850568 CCCACCCATATATACCCTTCCC 59.149 54.545 0.00 0.00 0.00 3.97
851 3109 2.850568 CCACCCATATATACCCTTCCCC 59.149 54.545 0.00 0.00 0.00 4.81
852 3110 3.537337 CACCCATATATACCCTTCCCCA 58.463 50.000 0.00 0.00 0.00 4.96
853 3111 3.265995 CACCCATATATACCCTTCCCCAC 59.734 52.174 0.00 0.00 0.00 4.61
854 3112 2.850568 CCCATATATACCCTTCCCCACC 59.149 54.545 0.00 0.00 0.00 4.61
855 3113 2.850568 CCATATATACCCTTCCCCACCC 59.149 54.545 0.00 0.00 0.00 4.61
856 3114 3.537337 CATATATACCCTTCCCCACCCA 58.463 50.000 0.00 0.00 0.00 4.51
857 3115 1.829138 ATATACCCTTCCCCACCCAC 58.171 55.000 0.00 0.00 0.00 4.61
858 3116 0.327770 TATACCCTTCCCCACCCACC 60.328 60.000 0.00 0.00 0.00 4.61
859 3117 2.440196 ATACCCTTCCCCACCCACCA 62.440 60.000 0.00 0.00 0.00 4.17
860 3118 3.979497 CCCTTCCCCACCCACCAC 61.979 72.222 0.00 0.00 0.00 4.16
861 3119 3.979497 CCTTCCCCACCCACCACC 61.979 72.222 0.00 0.00 0.00 4.61
862 3120 3.182263 CTTCCCCACCCACCACCA 61.182 66.667 0.00 0.00 0.00 4.17
863 3121 3.503839 TTCCCCACCCACCACCAC 61.504 66.667 0.00 0.00 0.00 4.16
867 3125 4.636435 CCACCCACCACCACCGAC 62.636 72.222 0.00 0.00 0.00 4.79
868 3126 4.980805 CACCCACCACCACCGACG 62.981 72.222 0.00 0.00 0.00 5.12
886 3144 2.203252 CCGCCATCCACATCCAGG 60.203 66.667 0.00 0.00 0.00 4.45
887 3145 2.745308 CCGCCATCCACATCCAGGA 61.745 63.158 0.00 0.00 39.97 3.86
890 3148 1.150081 CCATCCACATCCAGGAGCC 59.850 63.158 0.00 0.00 38.83 4.70
891 3149 1.638679 CCATCCACATCCAGGAGCCA 61.639 60.000 0.00 0.00 38.83 4.75
897 3155 2.041762 ATCCAGGAGCCAGAGCCA 59.958 61.111 0.00 0.00 41.25 4.75
898 3156 1.385631 ATCCAGGAGCCAGAGCCAT 60.386 57.895 0.00 0.00 41.25 4.40
899 3157 1.417288 ATCCAGGAGCCAGAGCCATC 61.417 60.000 0.00 0.00 41.25 3.51
900 3158 2.108566 CAGGAGCCAGAGCCATCG 59.891 66.667 0.00 0.00 41.25 3.84
901 3159 2.364842 AGGAGCCAGAGCCATCGT 60.365 61.111 0.00 0.00 41.25 3.73
902 3160 2.107953 GGAGCCAGAGCCATCGTC 59.892 66.667 0.00 0.00 41.25 4.20
1000 3298 1.380380 TCAGATCTGAGGAGCCGCA 60.380 57.895 21.67 0.00 34.14 5.69
1002 3300 0.600518 CAGATCTGAGGAGCCGCATG 60.601 60.000 18.34 0.00 0.00 4.06
1043 3341 0.179000 GGTGACATACCCAGCTCCAG 59.821 60.000 0.00 0.00 44.15 3.86
1056 3354 3.832237 CTCCAGCAACGCACCACCT 62.832 63.158 0.00 0.00 0.00 4.00
1248 3709 4.281688 CCTTTTGTTGTGAATGGATGGAGT 59.718 41.667 0.00 0.00 0.00 3.85
1251 3712 3.595173 TGTTGTGAATGGATGGAGTACG 58.405 45.455 0.00 0.00 0.00 3.67
1252 3713 3.007506 TGTTGTGAATGGATGGAGTACGT 59.992 43.478 0.00 0.00 0.00 3.57
1253 3714 4.221041 TGTTGTGAATGGATGGAGTACGTA 59.779 41.667 0.00 0.00 0.00 3.57
1254 3715 5.105106 TGTTGTGAATGGATGGAGTACGTAT 60.105 40.000 0.00 0.00 0.00 3.06
1594 4055 2.540265 ATTCGCTGATGGGAAGCTAG 57.460 50.000 0.00 0.00 45.93 3.42
1602 4063 3.703556 CTGATGGGAAGCTAGAAGAGTCA 59.296 47.826 0.00 0.00 0.00 3.41
1647 4108 5.471797 TGAACCTGAATATTTCGCAACTCAA 59.528 36.000 0.00 0.00 0.00 3.02
1660 4121 2.819608 GCAACTCAAGCAAAGGATGGTA 59.180 45.455 0.00 0.00 39.29 3.25
1697 4158 0.908180 AATCGTCGGAAGGAAGGGGT 60.908 55.000 0.00 0.00 0.00 4.95
1744 4205 3.053019 TGTGCCAGAATATCCCCAAATGA 60.053 43.478 0.00 0.00 0.00 2.57
1797 4258 4.476297 TCATCCCCTTGGAATGAATCATG 58.524 43.478 0.00 0.00 45.98 3.07
1798 4259 4.079038 TCATCCCCTTGGAATGAATCATGT 60.079 41.667 0.00 0.00 45.98 3.21
1799 4260 3.902218 TCCCCTTGGAATGAATCATGTC 58.098 45.455 0.00 0.00 37.86 3.06
1800 4261 3.269118 TCCCCTTGGAATGAATCATGTCA 59.731 43.478 0.00 0.00 37.86 3.58
1801 4262 4.079038 TCCCCTTGGAATGAATCATGTCAT 60.079 41.667 0.00 0.00 40.01 3.06
1803 4264 5.834742 CCCCTTGGAATGAATCATGTCATTA 59.165 40.000 10.59 0.00 45.98 1.90
1804 4265 6.015688 CCCCTTGGAATGAATCATGTCATTAG 60.016 42.308 10.59 6.12 45.98 1.73
1805 4266 6.444633 CCTTGGAATGAATCATGTCATTAGC 58.555 40.000 10.59 1.82 45.98 3.09
1806 4267 6.040054 CCTTGGAATGAATCATGTCATTAGCA 59.960 38.462 10.59 0.00 45.98 3.49
1807 4268 7.407393 TTGGAATGAATCATGTCATTAGCAA 57.593 32.000 10.59 0.00 45.98 3.91
1808 4269 7.591421 TGGAATGAATCATGTCATTAGCAAT 57.409 32.000 10.59 0.00 45.98 3.56
1809 4270 7.654568 TGGAATGAATCATGTCATTAGCAATC 58.345 34.615 10.59 0.06 45.98 2.67
1810 4271 7.088905 GGAATGAATCATGTCATTAGCAATCC 58.911 38.462 10.59 4.73 45.98 3.01
1811 4272 7.039923 GGAATGAATCATGTCATTAGCAATCCT 60.040 37.037 10.59 0.00 45.98 3.24
1812 4273 6.628919 TGAATCATGTCATTAGCAATCCTG 57.371 37.500 0.00 0.00 0.00 3.86
1813 4274 5.533528 TGAATCATGTCATTAGCAATCCTGG 59.466 40.000 0.00 0.00 0.00 4.45
1814 4275 4.776435 TCATGTCATTAGCAATCCTGGA 57.224 40.909 0.00 0.00 0.00 3.86
1815 4276 5.314718 TCATGTCATTAGCAATCCTGGAT 57.685 39.130 2.57 2.57 0.00 3.41
1816 4277 6.438186 TCATGTCATTAGCAATCCTGGATA 57.562 37.500 10.13 0.00 0.00 2.59
1817 4278 6.470278 TCATGTCATTAGCAATCCTGGATAG 58.530 40.000 10.13 0.00 0.00 2.08
1818 4279 5.894298 TGTCATTAGCAATCCTGGATAGT 57.106 39.130 10.13 0.17 0.00 2.12
1819 4280 6.252599 TGTCATTAGCAATCCTGGATAGTT 57.747 37.500 10.13 1.02 0.00 2.24
1820 4281 7.373617 TGTCATTAGCAATCCTGGATAGTTA 57.626 36.000 10.13 0.06 0.00 2.24
1821 4282 7.977818 TGTCATTAGCAATCCTGGATAGTTAT 58.022 34.615 10.13 0.00 0.00 1.89
1822 4283 7.879677 TGTCATTAGCAATCCTGGATAGTTATG 59.120 37.037 10.13 5.29 0.00 1.90
1823 4284 7.880195 GTCATTAGCAATCCTGGATAGTTATGT 59.120 37.037 10.13 0.00 0.00 2.29
1824 4285 7.879677 TCATTAGCAATCCTGGATAGTTATGTG 59.120 37.037 10.13 3.80 0.00 3.21
1825 4286 5.636903 AGCAATCCTGGATAGTTATGTGT 57.363 39.130 10.13 0.00 0.00 3.72
1826 4287 5.371526 AGCAATCCTGGATAGTTATGTGTG 58.628 41.667 10.13 2.31 0.00 3.82
1827 4288 5.104360 AGCAATCCTGGATAGTTATGTGTGT 60.104 40.000 10.13 0.00 0.00 3.72
1828 4289 6.099701 AGCAATCCTGGATAGTTATGTGTGTA 59.900 38.462 10.13 0.00 0.00 2.90
1829 4290 6.202954 GCAATCCTGGATAGTTATGTGTGTAC 59.797 42.308 10.13 0.00 0.00 2.90
1830 4291 7.500992 CAATCCTGGATAGTTATGTGTGTACT 58.499 38.462 10.13 0.00 0.00 2.73
1831 4292 6.465439 TCCTGGATAGTTATGTGTGTACTG 57.535 41.667 0.00 0.00 0.00 2.74
1832 4293 5.955959 TCCTGGATAGTTATGTGTGTACTGT 59.044 40.000 0.00 0.00 0.00 3.55
1833 4294 6.042777 CCTGGATAGTTATGTGTGTACTGTG 58.957 44.000 0.00 0.00 0.00 3.66
1834 4295 6.351033 CCTGGATAGTTATGTGTGTACTGTGT 60.351 42.308 0.00 0.00 0.00 3.72
1835 4296 6.999950 TGGATAGTTATGTGTGTACTGTGTT 58.000 36.000 0.00 0.00 0.00 3.32
1836 4297 6.871492 TGGATAGTTATGTGTGTACTGTGTTG 59.129 38.462 0.00 0.00 0.00 3.33
1837 4298 6.872020 GGATAGTTATGTGTGTACTGTGTTGT 59.128 38.462 0.00 0.00 0.00 3.32
1838 4299 5.984233 AGTTATGTGTGTACTGTGTTGTG 57.016 39.130 0.00 0.00 0.00 3.33
1839 4300 4.272504 AGTTATGTGTGTACTGTGTTGTGC 59.727 41.667 0.00 0.00 0.00 4.57
1840 4301 2.394930 TGTGTGTACTGTGTTGTGCT 57.605 45.000 0.00 0.00 0.00 4.40
1841 4302 2.705730 TGTGTGTACTGTGTTGTGCTT 58.294 42.857 0.00 0.00 0.00 3.91
1842 4303 3.863041 TGTGTGTACTGTGTTGTGCTTA 58.137 40.909 0.00 0.00 0.00 3.09
1843 4304 4.447290 TGTGTGTACTGTGTTGTGCTTAT 58.553 39.130 0.00 0.00 0.00 1.73
1844 4305 4.878971 TGTGTGTACTGTGTTGTGCTTATT 59.121 37.500 0.00 0.00 0.00 1.40
1845 4306 5.355630 TGTGTGTACTGTGTTGTGCTTATTT 59.644 36.000 0.00 0.00 0.00 1.40
1846 4307 5.681105 GTGTGTACTGTGTTGTGCTTATTTG 59.319 40.000 0.00 0.00 0.00 2.32
1847 4308 5.355630 TGTGTACTGTGTTGTGCTTATTTGT 59.644 36.000 0.00 0.00 0.00 2.83
1848 4309 6.539103 TGTGTACTGTGTTGTGCTTATTTGTA 59.461 34.615 0.00 0.00 0.00 2.41
1849 4310 7.227711 TGTGTACTGTGTTGTGCTTATTTGTAT 59.772 33.333 0.00 0.00 0.00 2.29
1850 4311 7.744715 GTGTACTGTGTTGTGCTTATTTGTATC 59.255 37.037 0.00 0.00 0.00 2.24
1851 4312 6.254281 ACTGTGTTGTGCTTATTTGTATCC 57.746 37.500 0.00 0.00 0.00 2.59
1852 4313 5.106712 ACTGTGTTGTGCTTATTTGTATCCG 60.107 40.000 0.00 0.00 0.00 4.18
1853 4314 4.155099 TGTGTTGTGCTTATTTGTATCCGG 59.845 41.667 0.00 0.00 0.00 5.14
1854 4315 3.127895 TGTTGTGCTTATTTGTATCCGGC 59.872 43.478 0.00 0.00 0.00 6.13
1855 4316 2.294074 TGTGCTTATTTGTATCCGGCC 58.706 47.619 0.00 0.00 0.00 6.13
1856 4317 2.092646 TGTGCTTATTTGTATCCGGCCT 60.093 45.455 0.00 0.00 0.00 5.19
1857 4318 2.949644 GTGCTTATTTGTATCCGGCCTT 59.050 45.455 0.00 0.00 0.00 4.35
1858 4319 2.948979 TGCTTATTTGTATCCGGCCTTG 59.051 45.455 0.00 0.00 0.00 3.61
1859 4320 2.287608 GCTTATTTGTATCCGGCCTTGC 60.288 50.000 0.00 0.00 0.00 4.01
1860 4321 3.214328 CTTATTTGTATCCGGCCTTGCT 58.786 45.455 0.00 0.00 0.00 3.91
1861 4322 2.143876 ATTTGTATCCGGCCTTGCTT 57.856 45.000 0.00 0.00 0.00 3.91
1862 4323 1.459450 TTTGTATCCGGCCTTGCTTC 58.541 50.000 0.00 0.00 0.00 3.86
1863 4324 0.618458 TTGTATCCGGCCTTGCTTCT 59.382 50.000 0.00 0.00 0.00 2.85
1864 4325 0.107703 TGTATCCGGCCTTGCTTCTG 60.108 55.000 0.00 0.00 0.00 3.02
1865 4326 1.153168 TATCCGGCCTTGCTTCTGC 60.153 57.895 0.00 0.00 40.20 4.26
1878 4339 2.569059 GCTTCTGCAAGGCATCTATCA 58.431 47.619 0.00 0.00 38.13 2.15
1879 4340 2.548904 GCTTCTGCAAGGCATCTATCAG 59.451 50.000 0.00 0.00 38.13 2.90
1880 4341 3.806380 CTTCTGCAAGGCATCTATCAGT 58.194 45.455 0.00 0.00 38.13 3.41
1881 4342 4.741837 GCTTCTGCAAGGCATCTATCAGTA 60.742 45.833 0.00 0.00 38.13 2.74
1882 4343 5.549347 CTTCTGCAAGGCATCTATCAGTAT 58.451 41.667 0.00 0.00 38.13 2.12
1883 4344 4.891260 TCTGCAAGGCATCTATCAGTATG 58.109 43.478 0.00 0.00 38.13 2.39
1884 4345 4.346127 TCTGCAAGGCATCTATCAGTATGT 59.654 41.667 0.00 0.00 38.13 2.29
1885 4346 4.635223 TGCAAGGCATCTATCAGTATGTC 58.365 43.478 0.00 0.00 32.45 3.06
1886 4347 3.999663 GCAAGGCATCTATCAGTATGTCC 59.000 47.826 0.00 0.00 37.40 4.02
1887 4348 4.503817 GCAAGGCATCTATCAGTATGTCCA 60.504 45.833 0.00 0.00 37.40 4.02
1888 4349 4.881019 AGGCATCTATCAGTATGTCCAC 57.119 45.455 0.00 0.00 37.40 4.02
1889 4350 4.487804 AGGCATCTATCAGTATGTCCACT 58.512 43.478 0.00 0.00 37.40 4.00
1890 4351 5.645201 AGGCATCTATCAGTATGTCCACTA 58.355 41.667 0.00 0.00 37.40 2.74
1891 4352 6.077993 AGGCATCTATCAGTATGTCCACTAA 58.922 40.000 0.00 0.00 37.40 2.24
2056 4988 8.420374 AGTTGGATGTGATAGTATGTAAAACG 57.580 34.615 0.00 0.00 0.00 3.60
2118 5050 4.159135 CCTTTGCTTGTGGCTATTTCTGAT 59.841 41.667 0.00 0.00 42.39 2.90
2219 5151 4.722526 TCTTTGGAAGTGGGAATTCAGA 57.277 40.909 7.93 0.00 0.00 3.27
2245 5177 6.198650 TGTTTCTTAATGCCTCATGTCATG 57.801 37.500 6.47 6.47 0.00 3.07
2247 5179 4.776435 TCTTAATGCCTCATGTCATGGA 57.224 40.909 12.90 0.00 0.00 3.41
2264 5196 9.645128 ATGTCATGGAGATTTGATGGTTATAAA 57.355 29.630 0.00 0.00 0.00 1.40
2312 5247 2.690497 TGTGTAGCCAGATCAGTAGAGC 59.310 50.000 0.00 0.00 0.00 4.09
2313 5248 2.955660 GTGTAGCCAGATCAGTAGAGCT 59.044 50.000 0.00 0.00 42.23 4.09
2416 5355 4.652822 ACCAGATTGAGAGTTGGGTAAAC 58.347 43.478 0.00 0.00 39.24 2.01
2520 5459 3.134574 ACCGCATGTCTTTTAGGTTGA 57.865 42.857 0.00 0.00 0.00 3.18
2524 5463 3.853671 CGCATGTCTTTTAGGTTGATTGC 59.146 43.478 0.00 0.00 0.00 3.56
2568 6521 9.846248 ATCATTTTTCAAAGTGTATGAAGTAGC 57.154 29.630 0.00 0.00 38.01 3.58
2569 6522 8.015087 TCATTTTTCAAAGTGTATGAAGTAGCG 58.985 33.333 0.00 0.00 38.01 4.26
2570 6523 7.485418 TTTTTCAAAGTGTATGAAGTAGCGA 57.515 32.000 0.00 0.00 38.01 4.93
2571 6524 7.485418 TTTTCAAAGTGTATGAAGTAGCGAA 57.515 32.000 0.00 0.00 38.01 4.70
2572 6525 6.462073 TTCAAAGTGTATGAAGTAGCGAAC 57.538 37.500 0.00 0.00 33.15 3.95
2573 6526 4.927425 TCAAAGTGTATGAAGTAGCGAACC 59.073 41.667 0.00 0.00 0.00 3.62
2574 6527 4.530710 AAGTGTATGAAGTAGCGAACCA 57.469 40.909 0.00 0.00 0.00 3.67
2575 6528 4.530710 AGTGTATGAAGTAGCGAACCAA 57.469 40.909 0.00 0.00 0.00 3.67
2576 6529 4.243270 AGTGTATGAAGTAGCGAACCAAC 58.757 43.478 0.00 0.00 0.00 3.77
2577 6530 3.370061 GTGTATGAAGTAGCGAACCAACC 59.630 47.826 0.00 0.00 0.00 3.77
2578 6531 2.109425 ATGAAGTAGCGAACCAACCC 57.891 50.000 0.00 0.00 0.00 4.11
2579 6532 0.320073 TGAAGTAGCGAACCAACCCG 60.320 55.000 0.00 0.00 0.00 5.28
2580 6533 0.320160 GAAGTAGCGAACCAACCCGT 60.320 55.000 0.00 0.00 0.00 5.28
2581 6534 0.601841 AAGTAGCGAACCAACCCGTG 60.602 55.000 0.00 0.00 0.00 4.94
2590 6543 3.168773 CCAACCCGTGGTTAGATGG 57.831 57.895 7.83 3.28 45.01 3.51
2591 6544 0.326927 CCAACCCGTGGTTAGATGGT 59.673 55.000 7.83 0.00 45.01 3.55
2592 6545 1.271707 CCAACCCGTGGTTAGATGGTT 60.272 52.381 7.83 0.00 45.01 3.67
2593 6546 2.027007 CCAACCCGTGGTTAGATGGTTA 60.027 50.000 7.83 0.00 45.01 2.85
2594 6547 3.267483 CAACCCGTGGTTAGATGGTTAG 58.733 50.000 7.83 0.00 45.01 2.34
2595 6548 2.823959 ACCCGTGGTTAGATGGTTAGA 58.176 47.619 0.00 0.00 27.29 2.10
2596 6549 2.764572 ACCCGTGGTTAGATGGTTAGAG 59.235 50.000 0.00 0.00 27.29 2.43
2597 6550 2.102588 CCCGTGGTTAGATGGTTAGAGG 59.897 54.545 0.00 0.00 0.00 3.69
2598 6551 2.102588 CCGTGGTTAGATGGTTAGAGGG 59.897 54.545 0.00 0.00 0.00 4.30
2599 6552 3.028850 CGTGGTTAGATGGTTAGAGGGA 58.971 50.000 0.00 0.00 0.00 4.20
2600 6553 3.181478 CGTGGTTAGATGGTTAGAGGGAC 60.181 52.174 0.00 0.00 0.00 4.46
2602 6555 4.030913 TGGTTAGATGGTTAGAGGGACTG 58.969 47.826 0.00 0.00 41.55 3.51
2603 6556 4.031611 GGTTAGATGGTTAGAGGGACTGT 58.968 47.826 0.00 0.00 41.55 3.55
2604 6557 4.141914 GGTTAGATGGTTAGAGGGACTGTG 60.142 50.000 0.00 0.00 41.55 3.66
2605 6558 3.191888 AGATGGTTAGAGGGACTGTGT 57.808 47.619 0.00 0.00 41.55 3.72
2606 6559 3.521727 AGATGGTTAGAGGGACTGTGTT 58.478 45.455 0.00 0.00 41.55 3.32
2607 6560 4.684724 AGATGGTTAGAGGGACTGTGTTA 58.315 43.478 0.00 0.00 41.55 2.41
2608 6561 5.281314 AGATGGTTAGAGGGACTGTGTTAT 58.719 41.667 0.00 0.00 41.55 1.89
2609 6562 5.364157 AGATGGTTAGAGGGACTGTGTTATC 59.636 44.000 0.00 0.00 41.55 1.75
2610 6563 4.422057 TGGTTAGAGGGACTGTGTTATCA 58.578 43.478 0.00 0.00 41.55 2.15
2611 6564 4.222145 TGGTTAGAGGGACTGTGTTATCAC 59.778 45.833 0.00 0.00 41.55 3.06
2612 6565 4.382793 GGTTAGAGGGACTGTGTTATCACC 60.383 50.000 1.53 0.00 41.55 4.02
2613 6566 2.902608 AGAGGGACTGTGTTATCACCA 58.097 47.619 1.53 0.00 41.55 4.17
2614 6567 2.834549 AGAGGGACTGTGTTATCACCAG 59.165 50.000 1.53 2.61 41.55 4.00
2615 6568 1.279271 AGGGACTGTGTTATCACCAGC 59.721 52.381 1.53 0.00 43.26 4.85
2616 6569 1.679032 GGGACTGTGTTATCACCAGCC 60.679 57.143 1.53 0.67 43.26 4.85
2617 6570 1.679032 GGACTGTGTTATCACCAGCCC 60.679 57.143 1.53 0.00 43.26 5.19
2618 6571 1.003118 GACTGTGTTATCACCAGCCCA 59.997 52.381 1.53 0.00 43.26 5.36
2619 6572 1.271379 ACTGTGTTATCACCAGCCCAC 60.271 52.381 1.53 0.00 43.26 4.61
2620 6573 0.037590 TGTGTTATCACCAGCCCACC 59.962 55.000 1.53 0.00 43.26 4.61
2621 6574 0.037590 GTGTTATCACCAGCCCACCA 59.962 55.000 0.00 0.00 38.51 4.17
2622 6575 0.037590 TGTTATCACCAGCCCACCAC 59.962 55.000 0.00 0.00 0.00 4.16
2623 6576 1.024579 GTTATCACCAGCCCACCACG 61.025 60.000 0.00 0.00 0.00 4.94
2624 6577 1.485294 TTATCACCAGCCCACCACGT 61.485 55.000 0.00 0.00 0.00 4.49
2625 6578 1.485294 TATCACCAGCCCACCACGTT 61.485 55.000 0.00 0.00 0.00 3.99
2626 6579 2.351924 ATCACCAGCCCACCACGTTT 62.352 55.000 0.00 0.00 0.00 3.60
2627 6580 2.124693 CACCAGCCCACCACGTTTT 61.125 57.895 0.00 0.00 0.00 2.43
2628 6581 1.826487 ACCAGCCCACCACGTTTTC 60.826 57.895 0.00 0.00 0.00 2.29
2629 6582 1.826054 CCAGCCCACCACGTTTTCA 60.826 57.895 0.00 0.00 0.00 2.69
2630 6583 1.178534 CCAGCCCACCACGTTTTCAT 61.179 55.000 0.00 0.00 0.00 2.57
2631 6584 0.240945 CAGCCCACCACGTTTTCATC 59.759 55.000 0.00 0.00 0.00 2.92
2632 6585 0.110486 AGCCCACCACGTTTTCATCT 59.890 50.000 0.00 0.00 0.00 2.90
2633 6586 0.240945 GCCCACCACGTTTTCATCTG 59.759 55.000 0.00 0.00 0.00 2.90
2634 6587 1.890876 CCCACCACGTTTTCATCTGA 58.109 50.000 0.00 0.00 0.00 3.27
2635 6588 1.806542 CCCACCACGTTTTCATCTGAG 59.193 52.381 0.00 0.00 0.00 3.35
2636 6589 2.549992 CCCACCACGTTTTCATCTGAGA 60.550 50.000 0.00 0.00 0.00 3.27
2637 6590 3.338249 CCACCACGTTTTCATCTGAGAT 58.662 45.455 0.00 0.00 0.00 2.75
2638 6591 3.125829 CCACCACGTTTTCATCTGAGATG 59.874 47.826 16.15 16.15 0.00 2.90
2639 6592 2.744202 ACCACGTTTTCATCTGAGATGC 59.256 45.455 17.38 2.86 0.00 3.91
2640 6593 3.005554 CCACGTTTTCATCTGAGATGCT 58.994 45.455 17.38 0.00 0.00 3.79
2641 6594 3.063180 CCACGTTTTCATCTGAGATGCTC 59.937 47.826 17.38 6.72 0.00 4.26
2642 6595 3.681417 CACGTTTTCATCTGAGATGCTCA 59.319 43.478 17.38 1.42 38.25 4.26
2643 6596 4.331992 CACGTTTTCATCTGAGATGCTCAT 59.668 41.667 17.38 0.00 39.92 2.90
2644 6597 5.521372 CACGTTTTCATCTGAGATGCTCATA 59.479 40.000 17.38 0.00 39.92 2.15
2645 6598 5.752472 ACGTTTTCATCTGAGATGCTCATAG 59.248 40.000 17.38 9.23 39.92 2.23
2646 6599 5.177142 CGTTTTCATCTGAGATGCTCATAGG 59.823 44.000 17.38 3.59 39.92 2.57
2647 6600 3.957591 TCATCTGAGATGCTCATAGGC 57.042 47.619 17.38 0.00 39.92 3.93
2648 6601 3.236896 TCATCTGAGATGCTCATAGGCA 58.763 45.455 17.38 0.00 46.63 4.75
2649 6602 3.258622 TCATCTGAGATGCTCATAGGCAG 59.741 47.826 17.38 0.00 45.75 4.85
2652 6605 3.963222 GATGCTCATAGGCAGCGG 58.037 61.111 0.00 0.00 45.75 5.52
2653 6606 2.281345 ATGCTCATAGGCAGCGGC 60.281 61.111 0.00 0.00 45.75 6.53
2654 6607 4.897357 TGCTCATAGGCAGCGGCG 62.897 66.667 0.51 0.51 42.47 6.46
2656 6609 3.916544 CTCATAGGCAGCGGCGGA 61.917 66.667 9.78 0.00 42.47 5.54
2657 6610 3.855352 CTCATAGGCAGCGGCGGAG 62.855 68.421 9.78 3.59 42.47 4.63
2658 6611 3.916544 CATAGGCAGCGGCGGAGA 61.917 66.667 9.78 0.00 42.47 3.71
2659 6612 3.917760 ATAGGCAGCGGCGGAGAC 61.918 66.667 9.78 0.00 42.47 3.36
2701 6654 2.435059 GCCTGAGGCGTGAAGACC 60.435 66.667 8.16 0.00 39.62 3.85
2702 6655 3.059982 CCTGAGGCGTGAAGACCA 58.940 61.111 0.00 0.00 0.00 4.02
2703 6656 1.371183 CCTGAGGCGTGAAGACCAA 59.629 57.895 0.00 0.00 0.00 3.67
2704 6657 0.036010 CCTGAGGCGTGAAGACCAAT 60.036 55.000 0.00 0.00 0.00 3.16
2705 6658 1.611673 CCTGAGGCGTGAAGACCAATT 60.612 52.381 0.00 0.00 0.00 2.32
2706 6659 1.734465 CTGAGGCGTGAAGACCAATTC 59.266 52.381 0.00 0.00 0.00 2.17
2707 6660 1.087501 GAGGCGTGAAGACCAATTCC 58.912 55.000 0.00 0.00 0.00 3.01
2708 6661 0.693049 AGGCGTGAAGACCAATTCCT 59.307 50.000 0.00 0.00 0.00 3.36
2709 6662 1.073923 AGGCGTGAAGACCAATTCCTT 59.926 47.619 0.00 0.00 0.00 3.36
2710 6663 1.886542 GGCGTGAAGACCAATTCCTTT 59.113 47.619 0.00 0.00 0.00 3.11
2711 6664 2.351738 GGCGTGAAGACCAATTCCTTTG 60.352 50.000 0.00 0.00 34.93 2.77
2712 6665 2.293399 GCGTGAAGACCAATTCCTTTGT 59.707 45.455 0.00 0.00 33.15 2.83
2713 6666 3.243401 GCGTGAAGACCAATTCCTTTGTT 60.243 43.478 0.00 0.00 33.15 2.83
2714 6667 4.023536 GCGTGAAGACCAATTCCTTTGTTA 60.024 41.667 0.00 0.00 33.15 2.41
2715 6668 5.506649 GCGTGAAGACCAATTCCTTTGTTAA 60.507 40.000 0.00 0.00 33.15 2.01
2716 6669 6.142817 CGTGAAGACCAATTCCTTTGTTAAG 58.857 40.000 0.00 0.00 33.15 1.85
2717 6670 6.238648 CGTGAAGACCAATTCCTTTGTTAAGT 60.239 38.462 0.00 0.00 33.15 2.24
2718 6671 7.489160 GTGAAGACCAATTCCTTTGTTAAGTT 58.511 34.615 0.00 0.00 33.15 2.66
2719 6672 7.979537 GTGAAGACCAATTCCTTTGTTAAGTTT 59.020 33.333 0.00 0.00 33.15 2.66
2720 6673 8.536175 TGAAGACCAATTCCTTTGTTAAGTTTT 58.464 29.630 0.00 0.00 33.15 2.43
2721 6674 8.716646 AAGACCAATTCCTTTGTTAAGTTTTG 57.283 30.769 0.00 0.00 33.15 2.44
2722 6675 8.073467 AGACCAATTCCTTTGTTAAGTTTTGA 57.927 30.769 0.00 0.00 33.15 2.69
2723 6676 8.536175 AGACCAATTCCTTTGTTAAGTTTTGAA 58.464 29.630 0.00 0.00 33.15 2.69
2724 6677 9.157104 GACCAATTCCTTTGTTAAGTTTTGAAA 57.843 29.630 0.00 0.00 33.15 2.69
2725 6678 9.679661 ACCAATTCCTTTGTTAAGTTTTGAAAT 57.320 25.926 0.00 0.00 33.15 2.17
2730 6683 8.865590 TCCTTTGTTAAGTTTTGAAATAGTGC 57.134 30.769 0.00 0.00 0.00 4.40
2731 6684 8.470805 TCCTTTGTTAAGTTTTGAAATAGTGCA 58.529 29.630 0.00 0.00 0.00 4.57
2732 6685 8.755018 CCTTTGTTAAGTTTTGAAATAGTGCAG 58.245 33.333 0.00 0.00 0.00 4.41
2733 6686 7.692908 TTGTTAAGTTTTGAAATAGTGCAGC 57.307 32.000 0.00 0.00 0.00 5.25
2734 6687 7.038154 TGTTAAGTTTTGAAATAGTGCAGCT 57.962 32.000 0.00 0.00 0.00 4.24
2735 6688 8.160521 TGTTAAGTTTTGAAATAGTGCAGCTA 57.839 30.769 0.00 0.00 0.00 3.32
2736 6689 8.073768 TGTTAAGTTTTGAAATAGTGCAGCTAC 58.926 33.333 0.00 0.00 31.59 3.58
2737 6690 6.633500 AAGTTTTGAAATAGTGCAGCTACA 57.367 33.333 0.00 0.00 31.59 2.74
2738 6691 6.246420 AGTTTTGAAATAGTGCAGCTACAG 57.754 37.500 0.00 0.00 31.59 2.74
2739 6692 5.765182 AGTTTTGAAATAGTGCAGCTACAGT 59.235 36.000 0.00 0.00 31.59 3.55
2740 6693 6.263168 AGTTTTGAAATAGTGCAGCTACAGTT 59.737 34.615 0.00 0.00 31.59 3.16
2741 6694 5.862924 TTGAAATAGTGCAGCTACAGTTC 57.137 39.130 0.00 0.00 31.59 3.01
2742 6695 5.152623 TGAAATAGTGCAGCTACAGTTCT 57.847 39.130 0.00 0.00 31.59 3.01
2743 6696 5.171476 TGAAATAGTGCAGCTACAGTTCTC 58.829 41.667 0.00 0.00 31.59 2.87
2744 6697 5.047021 TGAAATAGTGCAGCTACAGTTCTCT 60.047 40.000 0.00 0.00 31.59 3.10
2745 6698 6.152831 TGAAATAGTGCAGCTACAGTTCTCTA 59.847 38.462 0.00 0.00 31.59 2.43
2746 6699 3.859411 AGTGCAGCTACAGTTCTCTAC 57.141 47.619 0.00 0.00 0.00 2.59
2747 6700 3.426615 AGTGCAGCTACAGTTCTCTACT 58.573 45.455 0.00 0.00 37.68 2.57
2766 6719 3.138205 CTGTAGCTACAGTGGACGAAG 57.862 52.381 35.77 15.64 46.51 3.79
2767 6720 1.816835 TGTAGCTACAGTGGACGAAGG 59.183 52.381 22.67 0.00 0.00 3.46
2768 6721 1.817447 GTAGCTACAGTGGACGAAGGT 59.183 52.381 19.15 0.00 0.00 3.50
2769 6722 0.603569 AGCTACAGTGGACGAAGGTG 59.396 55.000 0.00 0.00 0.00 4.00
2770 6723 0.389948 GCTACAGTGGACGAAGGTGG 60.390 60.000 0.00 0.00 0.00 4.61
2771 6724 0.389948 CTACAGTGGACGAAGGTGGC 60.390 60.000 0.00 0.00 0.00 5.01
2772 6725 1.823169 TACAGTGGACGAAGGTGGCC 61.823 60.000 0.00 0.00 0.00 5.36
2773 6726 2.526873 AGTGGACGAAGGTGGCCT 60.527 61.111 3.32 0.00 33.87 5.19
2774 6727 2.358737 GTGGACGAAGGTGGCCTG 60.359 66.667 3.32 0.00 32.13 4.85
2775 6728 3.636231 TGGACGAAGGTGGCCTGG 61.636 66.667 3.32 0.00 32.13 4.45
2776 6729 4.410400 GGACGAAGGTGGCCTGGG 62.410 72.222 3.32 0.00 32.13 4.45
2777 6730 4.410400 GACGAAGGTGGCCTGGGG 62.410 72.222 3.32 0.00 32.13 4.96
2787 6740 4.506255 GCCTGGGGCTTGCCGTAT 62.506 66.667 5.49 0.00 46.69 3.06
2788 6741 2.275418 CCTGGGGCTTGCCGTATT 59.725 61.111 5.49 0.00 0.00 1.89
2789 6742 1.823899 CCTGGGGCTTGCCGTATTC 60.824 63.158 5.49 0.00 0.00 1.75
2790 6743 1.823899 CTGGGGCTTGCCGTATTCC 60.824 63.158 5.49 1.47 0.00 3.01
2791 6744 2.270874 CTGGGGCTTGCCGTATTCCT 62.271 60.000 5.49 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 3.816523 GTGTCCGGTTCAATAGGAAAACA 59.183 43.478 0.00 0.00 37.23 2.83
55 56 1.303317 GCTGGGTGTCCGGTTCAAT 60.303 57.895 0.00 0.00 41.53 2.57
417 454 0.560193 TGCCTGCCTCCTCTCTCTAT 59.440 55.000 0.00 0.00 0.00 1.98
426 463 4.704833 TCGTGCTTGCCTGCCTCC 62.705 66.667 0.00 0.00 0.00 4.30
447 484 0.660595 CAACCTCGCGGCGATACTAG 60.661 60.000 26.60 13.42 34.61 2.57
475 512 0.247934 TTCCGACGATGACGATGACG 60.248 55.000 0.00 0.00 42.66 4.35
476 513 1.202154 ACTTCCGACGATGACGATGAC 60.202 52.381 0.00 0.00 42.66 3.06
477 514 1.092348 ACTTCCGACGATGACGATGA 58.908 50.000 0.00 0.00 42.66 2.92
478 515 1.583856 CAACTTCCGACGATGACGATG 59.416 52.381 0.00 0.00 42.66 3.84
479 516 1.909376 CAACTTCCGACGATGACGAT 58.091 50.000 0.00 0.00 42.66 3.73
480 517 0.731514 GCAACTTCCGACGATGACGA 60.732 55.000 0.00 0.00 42.66 4.20
671 720 4.250431 ACAAACACAGCACGCGCC 62.250 61.111 5.73 0.00 39.83 6.53
672 721 3.018428 CACAAACACAGCACGCGC 61.018 61.111 5.73 0.00 38.99 6.86
673 722 2.352229 CCACAAACACAGCACGCG 60.352 61.111 3.53 3.53 0.00 6.01
674 723 1.298339 GACCACAAACACAGCACGC 60.298 57.895 0.00 0.00 0.00 5.34
677 726 2.418368 AGAAGACCACAAACACAGCA 57.582 45.000 0.00 0.00 0.00 4.41
680 2938 5.710099 AGAAAAGAAGAAGACCACAAACACA 59.290 36.000 0.00 0.00 0.00 3.72
758 3016 1.318576 CTCGAAAAACAGCCCAAGGT 58.681 50.000 0.00 0.00 0.00 3.50
774 3032 3.207669 GGCCCATGAGCTTGCTCG 61.208 66.667 16.48 4.65 0.00 5.03
782 3040 4.758251 TGTCGCACGGCCCATGAG 62.758 66.667 5.83 2.52 0.00 2.90
790 3048 4.436998 GGACCTCCTGTCGCACGG 62.437 72.222 0.00 0.00 45.46 4.94
791 3049 3.374402 AGGACCTCCTGTCGCACG 61.374 66.667 0.00 0.00 46.55 5.34
800 3058 2.166050 GGTCGTTCTCTTTAGGACCTCC 59.834 54.545 0.00 0.00 43.69 4.30
801 3059 2.166050 GGGTCGTTCTCTTTAGGACCTC 59.834 54.545 0.00 2.53 45.40 3.85
802 3060 2.177734 GGGTCGTTCTCTTTAGGACCT 58.822 52.381 12.69 0.00 45.40 3.85
803 3061 1.206610 GGGGTCGTTCTCTTTAGGACC 59.793 57.143 0.00 0.00 45.38 4.46
804 3062 1.206610 GGGGGTCGTTCTCTTTAGGAC 59.793 57.143 0.00 0.00 0.00 3.85
805 3063 1.078324 AGGGGGTCGTTCTCTTTAGGA 59.922 52.381 0.00 0.00 0.00 2.94
806 3064 1.481363 GAGGGGGTCGTTCTCTTTAGG 59.519 57.143 0.00 0.00 0.00 2.69
807 3065 1.481363 GGAGGGGGTCGTTCTCTTTAG 59.519 57.143 0.00 0.00 0.00 1.85
808 3066 1.078324 AGGAGGGGGTCGTTCTCTTTA 59.922 52.381 0.00 0.00 0.00 1.85
809 3067 0.178900 AGGAGGGGGTCGTTCTCTTT 60.179 55.000 0.00 0.00 0.00 2.52
810 3068 0.615261 GAGGAGGGGGTCGTTCTCTT 60.615 60.000 0.00 0.00 32.21 2.85
811 3069 1.000612 GAGGAGGGGGTCGTTCTCT 59.999 63.158 0.00 0.00 32.21 3.10
812 3070 2.059190 GGAGGAGGGGGTCGTTCTC 61.059 68.421 0.00 0.00 33.71 2.87
813 3071 2.039137 GGAGGAGGGGGTCGTTCT 59.961 66.667 0.00 0.00 0.00 3.01
814 3072 3.082055 GGGAGGAGGGGGTCGTTC 61.082 72.222 0.00 0.00 0.00 3.95
815 3073 3.936566 TGGGAGGAGGGGGTCGTT 61.937 66.667 0.00 0.00 0.00 3.85
835 3093 3.265995 GTGGGTGGGGAAGGGTATATATG 59.734 52.174 0.00 0.00 0.00 1.78
837 3095 2.429683 GGTGGGTGGGGAAGGGTATATA 60.430 54.545 0.00 0.00 0.00 0.86
841 3099 2.204182 GGTGGGTGGGGAAGGGTA 60.204 66.667 0.00 0.00 0.00 3.69
842 3100 4.542627 TGGTGGGTGGGGAAGGGT 62.543 66.667 0.00 0.00 0.00 4.34
844 3102 3.979497 GGTGGTGGGTGGGGAAGG 61.979 72.222 0.00 0.00 0.00 3.46
845 3103 3.182263 TGGTGGTGGGTGGGGAAG 61.182 66.667 0.00 0.00 0.00 3.46
846 3104 3.503839 GTGGTGGTGGGTGGGGAA 61.504 66.667 0.00 0.00 0.00 3.97
850 3108 4.636435 GTCGGTGGTGGTGGGTGG 62.636 72.222 0.00 0.00 0.00 4.61
851 3109 4.980805 CGTCGGTGGTGGTGGGTG 62.981 72.222 0.00 0.00 0.00 4.61
865 3123 3.272334 GATGTGGATGGCGGCGTC 61.272 66.667 22.18 22.18 0.00 5.19
866 3124 4.856801 GGATGTGGATGGCGGCGT 62.857 66.667 9.37 2.02 0.00 5.68
867 3125 4.854924 TGGATGTGGATGGCGGCG 62.855 66.667 0.51 0.51 0.00 6.46
868 3126 2.903855 CTGGATGTGGATGGCGGC 60.904 66.667 0.00 0.00 0.00 6.53
871 3129 1.527844 GCTCCTGGATGTGGATGGC 60.528 63.158 0.00 0.00 32.56 4.40
880 3138 1.385631 ATGGCTCTGGCTCCTGGAT 60.386 57.895 0.00 0.00 38.73 3.41
886 3144 1.227205 CAGACGATGGCTCTGGCTC 60.227 63.158 0.00 0.00 38.73 4.70
887 3145 1.683707 TCAGACGATGGCTCTGGCT 60.684 57.895 0.00 0.00 36.55 4.75
890 3148 1.998315 CAAAGTCAGACGATGGCTCTG 59.002 52.381 0.23 0.00 45.40 3.35
891 3149 1.674221 GCAAAGTCAGACGATGGCTCT 60.674 52.381 9.76 0.00 45.40 4.09
897 3155 1.073216 CGCGAGCAAAGTCAGACGAT 61.073 55.000 0.00 0.00 0.00 3.73
898 3156 1.729484 CGCGAGCAAAGTCAGACGA 60.729 57.895 0.00 0.00 0.00 4.20
899 3157 2.765785 CGCGAGCAAAGTCAGACG 59.234 61.111 0.00 0.00 0.00 4.18
1000 3298 2.045926 GCCGCTGTGGAAGGACAT 60.046 61.111 12.29 0.00 42.00 3.06
1002 3300 3.050275 GTGCCGCTGTGGAAGGAC 61.050 66.667 12.29 0.00 42.00 3.85
1027 3325 0.253044 TTGCTGGAGCTGGGTATGTC 59.747 55.000 0.00 0.00 42.66 3.06
1043 3341 4.012895 CGTCAGGTGGTGCGTTGC 62.013 66.667 0.00 0.00 0.00 4.17
1171 3469 2.755655 TGAACAAGGAACTCCGCAAAAA 59.244 40.909 0.00 0.00 38.49 1.94
1172 3470 2.370349 TGAACAAGGAACTCCGCAAAA 58.630 42.857 0.00 0.00 38.49 2.44
1173 3471 2.045561 TGAACAAGGAACTCCGCAAA 57.954 45.000 0.00 0.00 38.49 3.68
1174 3472 1.879380 CATGAACAAGGAACTCCGCAA 59.121 47.619 0.00 0.00 38.49 4.85
1175 3473 1.071542 TCATGAACAAGGAACTCCGCA 59.928 47.619 0.00 0.00 38.49 5.69
1176 3474 1.808411 TCATGAACAAGGAACTCCGC 58.192 50.000 0.00 0.00 38.49 5.54
1177 3475 4.455533 TGAAATCATGAACAAGGAACTCCG 59.544 41.667 0.00 0.00 38.49 4.63
1178 3476 5.964958 TGAAATCATGAACAAGGAACTCC 57.035 39.130 0.00 0.00 38.49 3.85
1248 3709 7.722363 TGAATGAGCTGGAAAAGATATACGTA 58.278 34.615 0.00 0.00 0.00 3.57
1253 3714 9.584008 AACATATGAATGAGCTGGAAAAGATAT 57.416 29.630 10.38 0.00 36.54 1.63
1254 3715 8.985315 AACATATGAATGAGCTGGAAAAGATA 57.015 30.769 10.38 0.00 36.54 1.98
1594 4055 5.529060 ACACTTTTGGACTCATTGACTCTTC 59.471 40.000 0.00 0.00 0.00 2.87
1602 4063 6.713762 TCATCAAACACTTTTGGACTCATT 57.286 33.333 0.00 0.00 42.23 2.57
1647 4108 2.224161 GCGAGATCTACCATCCTTTGCT 60.224 50.000 0.00 0.00 0.00 3.91
1697 4158 6.298361 TCTTCACCAGTTTCAATGATGAGAA 58.702 36.000 0.00 0.00 36.78 2.87
1744 4205 6.042552 TCTCCAGATTCAGAGAACTTGAAGTT 59.957 38.462 10.82 10.82 41.95 2.66
1797 4258 7.880195 ACATAACTATCCAGGATTGCTAATGAC 59.120 37.037 7.44 0.00 0.00 3.06
1798 4259 7.879677 CACATAACTATCCAGGATTGCTAATGA 59.120 37.037 7.44 0.00 0.00 2.57
1799 4260 7.663081 ACACATAACTATCCAGGATTGCTAATG 59.337 37.037 7.44 11.98 0.00 1.90
1800 4261 7.663081 CACACATAACTATCCAGGATTGCTAAT 59.337 37.037 7.44 0.00 0.00 1.73
1801 4262 6.992123 CACACATAACTATCCAGGATTGCTAA 59.008 38.462 7.44 0.00 0.00 3.09
1802 4263 6.099701 ACACACATAACTATCCAGGATTGCTA 59.900 38.462 7.44 1.59 0.00 3.49
1803 4264 5.104360 ACACACATAACTATCCAGGATTGCT 60.104 40.000 7.44 0.00 0.00 3.91
1804 4265 5.126067 ACACACATAACTATCCAGGATTGC 58.874 41.667 7.44 0.00 0.00 3.56
1805 4266 7.439356 CAGTACACACATAACTATCCAGGATTG 59.561 40.741 7.44 8.45 0.00 2.67
1806 4267 7.125811 ACAGTACACACATAACTATCCAGGATT 59.874 37.037 7.44 0.00 0.00 3.01
1807 4268 6.611642 ACAGTACACACATAACTATCCAGGAT 59.388 38.462 7.27 7.27 0.00 3.24
1808 4269 5.955959 ACAGTACACACATAACTATCCAGGA 59.044 40.000 0.00 0.00 0.00 3.86
1809 4270 6.042777 CACAGTACACACATAACTATCCAGG 58.957 44.000 0.00 0.00 0.00 4.45
1810 4271 6.631016 ACACAGTACACACATAACTATCCAG 58.369 40.000 0.00 0.00 0.00 3.86
1811 4272 6.599356 ACACAGTACACACATAACTATCCA 57.401 37.500 0.00 0.00 0.00 3.41
1812 4273 6.872020 ACAACACAGTACACACATAACTATCC 59.128 38.462 0.00 0.00 0.00 2.59
1813 4274 7.621426 GCACAACACAGTACACACATAACTATC 60.621 40.741 0.00 0.00 0.00 2.08
1814 4275 6.147164 GCACAACACAGTACACACATAACTAT 59.853 38.462 0.00 0.00 0.00 2.12
1815 4276 5.464057 GCACAACACAGTACACACATAACTA 59.536 40.000 0.00 0.00 0.00 2.24
1816 4277 4.272504 GCACAACACAGTACACACATAACT 59.727 41.667 0.00 0.00 0.00 2.24
1817 4278 4.272504 AGCACAACACAGTACACACATAAC 59.727 41.667 0.00 0.00 0.00 1.89
1818 4279 4.447290 AGCACAACACAGTACACACATAA 58.553 39.130 0.00 0.00 0.00 1.90
1819 4280 4.066646 AGCACAACACAGTACACACATA 57.933 40.909 0.00 0.00 0.00 2.29
1820 4281 2.917933 AGCACAACACAGTACACACAT 58.082 42.857 0.00 0.00 0.00 3.21
1821 4282 2.394930 AGCACAACACAGTACACACA 57.605 45.000 0.00 0.00 0.00 3.72
1822 4283 5.418310 AATAAGCACAACACAGTACACAC 57.582 39.130 0.00 0.00 0.00 3.82
1823 4284 5.355630 ACAAATAAGCACAACACAGTACACA 59.644 36.000 0.00 0.00 0.00 3.72
1824 4285 5.816919 ACAAATAAGCACAACACAGTACAC 58.183 37.500 0.00 0.00 0.00 2.90
1825 4286 7.094975 GGATACAAATAAGCACAACACAGTACA 60.095 37.037 0.00 0.00 0.00 2.90
1826 4287 7.241376 GGATACAAATAAGCACAACACAGTAC 58.759 38.462 0.00 0.00 0.00 2.73
1827 4288 6.091577 CGGATACAAATAAGCACAACACAGTA 59.908 38.462 0.00 0.00 0.00 2.74
1828 4289 5.106712 CGGATACAAATAAGCACAACACAGT 60.107 40.000 0.00 0.00 0.00 3.55
1829 4290 5.323900 CGGATACAAATAAGCACAACACAG 58.676 41.667 0.00 0.00 0.00 3.66
1830 4291 4.155099 CCGGATACAAATAAGCACAACACA 59.845 41.667 0.00 0.00 0.00 3.72
1831 4292 4.658071 CCGGATACAAATAAGCACAACAC 58.342 43.478 0.00 0.00 0.00 3.32
1832 4293 3.127895 GCCGGATACAAATAAGCACAACA 59.872 43.478 5.05 0.00 0.00 3.33
1833 4294 3.488553 GGCCGGATACAAATAAGCACAAC 60.489 47.826 5.05 0.00 0.00 3.32
1834 4295 2.685897 GGCCGGATACAAATAAGCACAA 59.314 45.455 5.05 0.00 0.00 3.33
1835 4296 2.092646 AGGCCGGATACAAATAAGCACA 60.093 45.455 5.05 0.00 0.00 4.57
1836 4297 2.572290 AGGCCGGATACAAATAAGCAC 58.428 47.619 5.05 0.00 0.00 4.40
1837 4298 2.948979 CAAGGCCGGATACAAATAAGCA 59.051 45.455 5.05 0.00 0.00 3.91
1838 4299 2.287608 GCAAGGCCGGATACAAATAAGC 60.288 50.000 5.05 0.00 0.00 3.09
1839 4300 3.214328 AGCAAGGCCGGATACAAATAAG 58.786 45.455 5.05 0.00 0.00 1.73
1840 4301 3.290948 AGCAAGGCCGGATACAAATAA 57.709 42.857 5.05 0.00 0.00 1.40
1841 4302 3.118038 AGAAGCAAGGCCGGATACAAATA 60.118 43.478 5.05 0.00 0.00 1.40
1842 4303 2.024414 GAAGCAAGGCCGGATACAAAT 58.976 47.619 5.05 0.00 0.00 2.32
1843 4304 1.004277 AGAAGCAAGGCCGGATACAAA 59.996 47.619 5.05 0.00 0.00 2.83
1844 4305 0.618458 AGAAGCAAGGCCGGATACAA 59.382 50.000 5.05 0.00 0.00 2.41
1845 4306 0.107703 CAGAAGCAAGGCCGGATACA 60.108 55.000 5.05 0.00 0.00 2.29
1846 4307 1.440145 GCAGAAGCAAGGCCGGATAC 61.440 60.000 5.05 0.00 41.58 2.24
1847 4308 1.153168 GCAGAAGCAAGGCCGGATA 60.153 57.895 5.05 0.00 41.58 2.59
1848 4309 2.439156 GCAGAAGCAAGGCCGGAT 60.439 61.111 5.05 0.00 41.58 4.18
1858 4319 2.548904 CTGATAGATGCCTTGCAGAAGC 59.451 50.000 0.00 0.00 43.65 3.86
1859 4320 3.806380 ACTGATAGATGCCTTGCAGAAG 58.194 45.455 0.00 0.00 43.65 2.85
1860 4321 3.920231 ACTGATAGATGCCTTGCAGAA 57.080 42.857 0.00 0.00 43.65 3.02
1861 4322 4.346127 ACATACTGATAGATGCCTTGCAGA 59.654 41.667 0.00 0.00 43.65 4.26
1862 4323 4.639334 ACATACTGATAGATGCCTTGCAG 58.361 43.478 0.00 0.00 43.65 4.41
1863 4324 4.503817 GGACATACTGATAGATGCCTTGCA 60.504 45.833 0.00 0.00 44.86 4.08
1864 4325 3.999663 GGACATACTGATAGATGCCTTGC 59.000 47.826 0.00 0.00 0.00 4.01
1865 4326 4.993584 GTGGACATACTGATAGATGCCTTG 59.006 45.833 0.00 0.00 0.00 3.61
1866 4327 4.904251 AGTGGACATACTGATAGATGCCTT 59.096 41.667 0.00 0.00 0.00 4.35
1867 4328 4.487804 AGTGGACATACTGATAGATGCCT 58.512 43.478 0.00 0.00 0.00 4.75
1868 4329 4.881019 AGTGGACATACTGATAGATGCC 57.119 45.455 0.00 0.00 0.00 4.40
1869 4330 5.866633 GCTTAGTGGACATACTGATAGATGC 59.133 44.000 0.00 0.00 32.19 3.91
1870 4331 6.986250 TGCTTAGTGGACATACTGATAGATG 58.014 40.000 0.00 0.00 32.19 2.90
1871 4332 7.603180 TTGCTTAGTGGACATACTGATAGAT 57.397 36.000 0.00 0.00 32.19 1.98
1872 4333 7.418337 TTTGCTTAGTGGACATACTGATAGA 57.582 36.000 0.00 0.00 32.19 1.98
1873 4334 8.668510 AATTTGCTTAGTGGACATACTGATAG 57.331 34.615 0.00 0.00 32.19 2.08
1881 4342 9.799106 AGCTTATATAATTTGCTTAGTGGACAT 57.201 29.630 2.67 0.00 0.00 3.06
1882 4343 9.627123 AAGCTTATATAATTTGCTTAGTGGACA 57.373 29.630 15.22 0.00 41.42 4.02
2023 4490 9.201127 CATACTATCACATCCAACTATTCACAG 57.799 37.037 0.00 0.00 0.00 3.66
2068 5000 6.404074 GGAGCAGTAAGAAATTTGATGGACAG 60.404 42.308 0.00 0.00 0.00 3.51
2085 5017 1.142870 ACAAGCAAAGGTGGAGCAGTA 59.857 47.619 0.00 0.00 0.00 2.74
2219 5151 7.230849 TGACATGAGGCATTAAGAAACAAAT 57.769 32.000 0.00 0.00 0.00 2.32
2245 5177 7.869429 CAGGCAATTTATAACCATCAAATCTCC 59.131 37.037 0.00 0.00 0.00 3.71
2247 5179 8.310122 ACAGGCAATTTATAACCATCAAATCT 57.690 30.769 0.00 0.00 0.00 2.40
2264 5196 4.406972 TGCTAAGAGATCAGTACAGGCAAT 59.593 41.667 0.00 0.00 0.00 3.56
2312 5247 3.538634 TTCTCACATCATCTGCCTCAG 57.461 47.619 0.00 0.00 0.00 3.35
2313 5248 3.370209 CCTTTCTCACATCATCTGCCTCA 60.370 47.826 0.00 0.00 0.00 3.86
2416 5355 1.875963 GGCCGTCCACAACAGATTG 59.124 57.895 0.00 0.00 41.98 2.67
2502 5441 3.853671 GCAATCAACCTAAAAGACATGCG 59.146 43.478 0.00 0.00 0.00 4.73
2503 5442 4.808558 TGCAATCAACCTAAAAGACATGC 58.191 39.130 0.00 0.00 0.00 4.06
2562 6515 0.601841 CACGGGTTGGTTCGCTACTT 60.602 55.000 0.00 0.00 0.00 2.24
2573 6526 2.194201 AACCATCTAACCACGGGTTG 57.806 50.000 15.93 8.12 46.35 3.77
2575 6528 2.764572 CTCTAACCATCTAACCACGGGT 59.235 50.000 0.00 0.00 37.65 5.28
2576 6529 2.102588 CCTCTAACCATCTAACCACGGG 59.897 54.545 0.00 0.00 0.00 5.28
2577 6530 2.102588 CCCTCTAACCATCTAACCACGG 59.897 54.545 0.00 0.00 0.00 4.94
2578 6531 3.028850 TCCCTCTAACCATCTAACCACG 58.971 50.000 0.00 0.00 0.00 4.94
2579 6532 4.031611 AGTCCCTCTAACCATCTAACCAC 58.968 47.826 0.00 0.00 0.00 4.16
2580 6533 4.030913 CAGTCCCTCTAACCATCTAACCA 58.969 47.826 0.00 0.00 0.00 3.67
2581 6534 4.031611 ACAGTCCCTCTAACCATCTAACC 58.968 47.826 0.00 0.00 0.00 2.85
2582 6535 4.466726 ACACAGTCCCTCTAACCATCTAAC 59.533 45.833 0.00 0.00 0.00 2.34
2583 6536 4.684724 ACACAGTCCCTCTAACCATCTAA 58.315 43.478 0.00 0.00 0.00 2.10
2584 6537 4.332683 ACACAGTCCCTCTAACCATCTA 57.667 45.455 0.00 0.00 0.00 1.98
2585 6538 3.191888 ACACAGTCCCTCTAACCATCT 57.808 47.619 0.00 0.00 0.00 2.90
2586 6539 3.983044 AACACAGTCCCTCTAACCATC 57.017 47.619 0.00 0.00 0.00 3.51
2587 6540 5.030147 TGATAACACAGTCCCTCTAACCAT 58.970 41.667 0.00 0.00 0.00 3.55
2588 6541 4.222145 GTGATAACACAGTCCCTCTAACCA 59.778 45.833 0.00 0.00 45.32 3.67
2589 6542 4.756502 GTGATAACACAGTCCCTCTAACC 58.243 47.826 0.00 0.00 45.32 2.85
2602 6555 0.037590 TGGTGGGCTGGTGATAACAC 59.962 55.000 0.00 0.00 45.27 3.32
2603 6556 0.037590 GTGGTGGGCTGGTGATAACA 59.962 55.000 0.00 0.00 0.00 2.41
2604 6557 1.024579 CGTGGTGGGCTGGTGATAAC 61.025 60.000 0.00 0.00 0.00 1.89
2605 6558 1.298340 CGTGGTGGGCTGGTGATAA 59.702 57.895 0.00 0.00 0.00 1.75
2606 6559 1.485294 AACGTGGTGGGCTGGTGATA 61.485 55.000 0.00 0.00 0.00 2.15
2607 6560 2.351924 AAACGTGGTGGGCTGGTGAT 62.352 55.000 0.00 0.00 0.00 3.06
2608 6561 2.559922 AAAACGTGGTGGGCTGGTGA 62.560 55.000 0.00 0.00 0.00 4.02
2609 6562 2.070654 GAAAACGTGGTGGGCTGGTG 62.071 60.000 0.00 0.00 0.00 4.17
2610 6563 1.826487 GAAAACGTGGTGGGCTGGT 60.826 57.895 0.00 0.00 0.00 4.00
2611 6564 1.178534 ATGAAAACGTGGTGGGCTGG 61.179 55.000 0.00 0.00 0.00 4.85
2612 6565 0.240945 GATGAAAACGTGGTGGGCTG 59.759 55.000 0.00 0.00 0.00 4.85
2613 6566 0.110486 AGATGAAAACGTGGTGGGCT 59.890 50.000 0.00 0.00 0.00 5.19
2614 6567 0.240945 CAGATGAAAACGTGGTGGGC 59.759 55.000 0.00 0.00 0.00 5.36
2615 6568 1.806542 CTCAGATGAAAACGTGGTGGG 59.193 52.381 0.00 0.00 0.00 4.61
2616 6569 2.766313 TCTCAGATGAAAACGTGGTGG 58.234 47.619 0.00 0.00 0.00 4.61
2617 6570 3.425359 GCATCTCAGATGAAAACGTGGTG 60.425 47.826 19.53 0.00 0.00 4.17
2618 6571 2.744202 GCATCTCAGATGAAAACGTGGT 59.256 45.455 19.53 0.00 0.00 4.16
2619 6572 3.005554 AGCATCTCAGATGAAAACGTGG 58.994 45.455 19.53 0.00 0.00 4.94
2620 6573 3.681417 TGAGCATCTCAGATGAAAACGTG 59.319 43.478 19.53 0.00 35.39 4.49
2621 6574 3.930336 TGAGCATCTCAGATGAAAACGT 58.070 40.909 19.53 0.00 35.39 3.99
2622 6575 5.177142 CCTATGAGCATCTCAGATGAAAACG 59.823 44.000 19.53 1.54 44.08 3.60
2623 6576 5.049543 GCCTATGAGCATCTCAGATGAAAAC 60.050 44.000 19.53 6.39 44.08 2.43
2624 6577 5.061853 GCCTATGAGCATCTCAGATGAAAA 58.938 41.667 19.53 2.48 44.08 2.29
2625 6578 4.102054 TGCCTATGAGCATCTCAGATGAAA 59.898 41.667 19.53 2.86 44.08 2.69
2626 6579 3.644738 TGCCTATGAGCATCTCAGATGAA 59.355 43.478 19.53 3.23 44.08 2.57
2627 6580 3.236896 TGCCTATGAGCATCTCAGATGA 58.763 45.455 19.53 0.00 44.08 2.92
2628 6581 3.591023 CTGCCTATGAGCATCTCAGATG 58.409 50.000 10.64 10.64 44.08 2.90
2629 6582 2.027929 GCTGCCTATGAGCATCTCAGAT 60.028 50.000 2.85 0.00 44.08 2.90
2630 6583 1.343789 GCTGCCTATGAGCATCTCAGA 59.656 52.381 2.85 0.00 44.08 3.27
2631 6584 1.798283 GCTGCCTATGAGCATCTCAG 58.202 55.000 2.85 0.00 44.08 3.35
2632 6585 0.033090 CGCTGCCTATGAGCATCTCA 59.967 55.000 0.00 0.00 44.99 3.27
2633 6586 0.669932 CCGCTGCCTATGAGCATCTC 60.670 60.000 0.00 0.00 43.09 2.75
2634 6587 1.370437 CCGCTGCCTATGAGCATCT 59.630 57.895 0.00 0.00 43.09 2.90
2635 6588 2.323580 GCCGCTGCCTATGAGCATC 61.324 63.158 0.00 0.00 43.09 3.91
2636 6589 2.281345 GCCGCTGCCTATGAGCAT 60.281 61.111 0.00 0.00 43.09 3.79
2637 6590 4.897357 CGCCGCTGCCTATGAGCA 62.897 66.667 0.00 0.00 41.46 4.26
2639 6592 3.855352 CTCCGCCGCTGCCTATGAG 62.855 68.421 0.00 0.00 0.00 2.90
2640 6593 3.916544 CTCCGCCGCTGCCTATGA 61.917 66.667 0.00 0.00 0.00 2.15
2641 6594 3.916544 TCTCCGCCGCTGCCTATG 61.917 66.667 0.00 0.00 0.00 2.23
2642 6595 3.917760 GTCTCCGCCGCTGCCTAT 61.918 66.667 0.00 0.00 0.00 2.57
2684 6637 2.435059 GGTCTTCACGCCTCAGGC 60.435 66.667 5.22 5.22 46.75 4.85
2685 6638 0.036010 ATTGGTCTTCACGCCTCAGG 60.036 55.000 0.00 0.00 0.00 3.86
2686 6639 1.734465 GAATTGGTCTTCACGCCTCAG 59.266 52.381 0.00 0.00 0.00 3.35
2687 6640 1.610624 GGAATTGGTCTTCACGCCTCA 60.611 52.381 0.00 0.00 0.00 3.86
2688 6641 1.087501 GGAATTGGTCTTCACGCCTC 58.912 55.000 0.00 0.00 0.00 4.70
2689 6642 0.693049 AGGAATTGGTCTTCACGCCT 59.307 50.000 0.00 0.00 0.00 5.52
2690 6643 1.534729 AAGGAATTGGTCTTCACGCC 58.465 50.000 0.00 0.00 0.00 5.68
2691 6644 2.293399 ACAAAGGAATTGGTCTTCACGC 59.707 45.455 0.00 0.00 43.66 5.34
2692 6645 4.568152 AACAAAGGAATTGGTCTTCACG 57.432 40.909 0.00 0.00 43.66 4.35
2693 6646 7.039313 ACTTAACAAAGGAATTGGTCTTCAC 57.961 36.000 0.00 0.00 43.66 3.18
2694 6647 7.654022 AACTTAACAAAGGAATTGGTCTTCA 57.346 32.000 0.00 0.00 43.66 3.02
2695 6648 8.817100 CAAAACTTAACAAAGGAATTGGTCTTC 58.183 33.333 0.00 0.00 43.66 2.87
2696 6649 8.536175 TCAAAACTTAACAAAGGAATTGGTCTT 58.464 29.630 0.00 0.00 43.66 3.01
2697 6650 8.073467 TCAAAACTTAACAAAGGAATTGGTCT 57.927 30.769 0.00 0.00 43.66 3.85
2698 6651 8.710835 TTCAAAACTTAACAAAGGAATTGGTC 57.289 30.769 0.00 0.00 43.66 4.02
2699 6652 9.679661 ATTTCAAAACTTAACAAAGGAATTGGT 57.320 25.926 0.00 0.00 43.66 3.67
2704 6657 9.308318 GCACTATTTCAAAACTTAACAAAGGAA 57.692 29.630 0.00 0.00 0.00 3.36
2705 6658 8.470805 TGCACTATTTCAAAACTTAACAAAGGA 58.529 29.630 0.00 0.00 0.00 3.36
2706 6659 8.641499 TGCACTATTTCAAAACTTAACAAAGG 57.359 30.769 0.00 0.00 0.00 3.11
2707 6660 8.268738 GCTGCACTATTTCAAAACTTAACAAAG 58.731 33.333 0.00 0.00 0.00 2.77
2708 6661 7.978975 AGCTGCACTATTTCAAAACTTAACAAA 59.021 29.630 1.02 0.00 0.00 2.83
2709 6662 7.488322 AGCTGCACTATTTCAAAACTTAACAA 58.512 30.769 1.02 0.00 0.00 2.83
2710 6663 7.038154 AGCTGCACTATTTCAAAACTTAACA 57.962 32.000 1.02 0.00 0.00 2.41
2711 6664 8.073768 TGTAGCTGCACTATTTCAAAACTTAAC 58.926 33.333 0.00 0.00 32.15 2.01
2712 6665 8.160521 TGTAGCTGCACTATTTCAAAACTTAA 57.839 30.769 0.00 0.00 32.15 1.85
2713 6666 7.444183 ACTGTAGCTGCACTATTTCAAAACTTA 59.556 33.333 0.00 0.00 32.15 2.24
2714 6667 6.263168 ACTGTAGCTGCACTATTTCAAAACTT 59.737 34.615 0.00 0.00 32.15 2.66
2715 6668 5.765182 ACTGTAGCTGCACTATTTCAAAACT 59.235 36.000 0.00 0.00 32.15 2.66
2716 6669 6.002062 ACTGTAGCTGCACTATTTCAAAAC 57.998 37.500 0.00 0.00 32.15 2.43
2717 6670 6.486657 AGAACTGTAGCTGCACTATTTCAAAA 59.513 34.615 0.00 0.00 32.15 2.44
2718 6671 5.997746 AGAACTGTAGCTGCACTATTTCAAA 59.002 36.000 0.00 0.00 32.15 2.69
2719 6672 5.551233 AGAACTGTAGCTGCACTATTTCAA 58.449 37.500 0.00 0.00 32.15 2.69
2720 6673 5.047021 AGAGAACTGTAGCTGCACTATTTCA 60.047 40.000 0.00 0.00 32.15 2.69
2721 6674 5.415221 AGAGAACTGTAGCTGCACTATTTC 58.585 41.667 0.00 1.86 32.15 2.17
2722 6675 5.413309 AGAGAACTGTAGCTGCACTATTT 57.587 39.130 0.00 0.00 32.15 1.40
2723 6676 5.654650 AGTAGAGAACTGTAGCTGCACTATT 59.345 40.000 0.00 0.00 36.93 1.73
2724 6677 5.197451 AGTAGAGAACTGTAGCTGCACTAT 58.803 41.667 0.00 0.00 36.93 2.12
2725 6678 4.590918 AGTAGAGAACTGTAGCTGCACTA 58.409 43.478 0.00 0.00 36.93 2.74
2726 6679 3.426615 AGTAGAGAACTGTAGCTGCACT 58.573 45.455 0.00 0.00 36.93 4.40
2727 6680 3.859411 AGTAGAGAACTGTAGCTGCAC 57.141 47.619 0.00 0.00 36.93 4.57
2747 6700 1.816835 CCTTCGTCCACTGTAGCTACA 59.183 52.381 24.63 24.63 34.56 2.74
2748 6701 1.817447 ACCTTCGTCCACTGTAGCTAC 59.183 52.381 17.30 17.30 0.00 3.58
2749 6702 1.816835 CACCTTCGTCCACTGTAGCTA 59.183 52.381 0.00 0.00 0.00 3.32
2750 6703 0.603569 CACCTTCGTCCACTGTAGCT 59.396 55.000 0.00 0.00 0.00 3.32
2751 6704 0.389948 CCACCTTCGTCCACTGTAGC 60.390 60.000 0.00 0.00 0.00 3.58
2752 6705 0.389948 GCCACCTTCGTCCACTGTAG 60.390 60.000 0.00 0.00 0.00 2.74
2753 6706 1.669440 GCCACCTTCGTCCACTGTA 59.331 57.895 0.00 0.00 0.00 2.74
2754 6707 2.426023 GCCACCTTCGTCCACTGT 59.574 61.111 0.00 0.00 0.00 3.55
2755 6708 2.358737 GGCCACCTTCGTCCACTG 60.359 66.667 0.00 0.00 0.00 3.66
2756 6709 2.526873 AGGCCACCTTCGTCCACT 60.527 61.111 5.01 0.00 0.00 4.00
2757 6710 2.358737 CAGGCCACCTTCGTCCAC 60.359 66.667 5.01 0.00 0.00 4.02
2758 6711 3.636231 CCAGGCCACCTTCGTCCA 61.636 66.667 5.01 0.00 0.00 4.02
2759 6712 4.410400 CCCAGGCCACCTTCGTCC 62.410 72.222 5.01 0.00 0.00 4.79
2760 6713 4.410400 CCCCAGGCCACCTTCGTC 62.410 72.222 5.01 0.00 0.00 4.20
2771 6724 1.823899 GAATACGGCAAGCCCCAGG 60.824 63.158 5.34 0.00 0.00 4.45
2772 6725 1.823899 GGAATACGGCAAGCCCCAG 60.824 63.158 5.34 0.00 0.00 4.45
2773 6726 2.274104 GGAATACGGCAAGCCCCA 59.726 61.111 5.34 0.00 0.00 4.96
2774 6727 2.595655 AGGAATACGGCAAGCCCC 59.404 61.111 5.34 0.14 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.