Multiple sequence alignment - TraesCS5B01G376800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G376800 chr5B 100.000 2743 0 0 1 2743 554639861 554642603 0.000000e+00 5066.0
1 TraesCS5B01G376800 chr5B 91.509 106 9 0 1 106 340615597 340615702 2.200000e-31 147.0
2 TraesCS5B01G376800 chr5A 88.460 2071 126 51 264 2270 572991998 572994019 0.000000e+00 2396.0
3 TraesCS5B01G376800 chr5A 87.857 140 10 5 109 243 572991873 572992010 1.020000e-34 158.0
4 TraesCS5B01G376800 chr5A 93.396 106 4 2 1 106 432047408 432047306 1.320000e-33 154.0
5 TraesCS5B01G376800 chr5D 92.804 1598 76 17 264 1831 453884927 453886515 0.000000e+00 2278.0
6 TraesCS5B01G376800 chr5D 84.585 253 12 5 1828 2080 453886547 453886772 2.750000e-55 226.0
7 TraesCS5B01G376800 chr5D 87.857 140 11 2 109 243 453884801 453884939 2.830000e-35 159.0
8 TraesCS5B01G376800 chr5D 91.667 108 8 1 1 107 509542980 509543087 6.120000e-32 148.0
9 TraesCS5B01G376800 chr5D 83.516 91 10 4 396 482 548963711 548963622 2.260000e-11 80.5
10 TraesCS5B01G376800 chr3D 92.593 108 6 1 1 106 418216048 418215941 1.320000e-33 154.0
11 TraesCS5B01G376800 chr3D 97.561 41 1 0 2279 2319 123300155 123300195 1.360000e-08 71.3
12 TraesCS5B01G376800 chr3D 97.500 40 1 0 2279 2318 477836199 477836160 4.900000e-08 69.4
13 TraesCS5B01G376800 chr1D 92.593 108 6 1 1 106 293609353 293609460 1.320000e-33 154.0
14 TraesCS5B01G376800 chr1D 97.500 40 1 0 2279 2318 112467924 112467885 4.900000e-08 69.4
15 TraesCS5B01G376800 chr1D 97.500 40 1 0 2279 2318 323952328 323952289 4.900000e-08 69.4
16 TraesCS5B01G376800 chr1D 97.500 40 1 0 2279 2318 431958112 431958073 4.900000e-08 69.4
17 TraesCS5B01G376800 chr1A 91.304 115 7 2 1 112 394592579 394592465 1.320000e-33 154.0
18 TraesCS5B01G376800 chr7B 92.523 107 7 1 1 106 181408190 181408296 4.730000e-33 152.0
19 TraesCS5B01G376800 chr1B 91.589 107 8 1 1 106 12814613 12814719 2.200000e-31 147.0
20 TraesCS5B01G376800 chr2A 90.826 109 9 1 1 108 619858477 619858585 7.920000e-31 145.0
21 TraesCS5B01G376800 chr6B 77.844 167 31 5 319 484 49954779 49954940 6.250000e-17 99.0
22 TraesCS5B01G376800 chr7D 76.263 198 30 14 298 491 60274505 60274321 3.760000e-14 89.8
23 TraesCS5B01G376800 chr2B 80.531 113 16 4 380 491 797930543 797930436 6.300000e-12 82.4
24 TraesCS5B01G376800 chrUn 97.500 40 1 0 2279 2318 65138957 65138918 4.900000e-08 69.4
25 TraesCS5B01G376800 chr6D 97.500 40 1 0 2279 2318 78520579 78520540 4.900000e-08 69.4
26 TraesCS5B01G376800 chr4A 97.500 40 1 0 2279 2318 18683392 18683353 4.900000e-08 69.4
27 TraesCS5B01G376800 chr3A 88.235 51 6 0 2270 2320 79381028 79381078 8.200000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G376800 chr5B 554639861 554642603 2742 False 5066.000000 5066 100.000000 1 2743 1 chr5B.!!$F2 2742
1 TraesCS5B01G376800 chr5A 572991873 572994019 2146 False 1277.000000 2396 88.158500 109 2270 2 chr5A.!!$F1 2161
2 TraesCS5B01G376800 chr5D 453884801 453886772 1971 False 887.666667 2278 88.415333 109 2080 3 chr5D.!!$F2 1971

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.032912 TCGTATAGGGGTGTGGAGCA 60.033 55.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1918 2033 0.184933 AGCCAGCAGTACCCAAACAA 59.815 50.0 0.0 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 9.683870 TTAAATTTAATGTTCGTATAGGGGTGT 57.316 29.630 6.54 0.00 0.00 4.16
76 77 7.562454 AATTTAATGTTCGTATAGGGGTGTG 57.438 36.000 0.00 0.00 0.00 3.82
77 78 3.553828 AATGTTCGTATAGGGGTGTGG 57.446 47.619 0.00 0.00 0.00 4.17
78 79 2.234896 TGTTCGTATAGGGGTGTGGA 57.765 50.000 0.00 0.00 0.00 4.02
79 80 2.104967 TGTTCGTATAGGGGTGTGGAG 58.895 52.381 0.00 0.00 0.00 3.86
80 81 1.117150 TTCGTATAGGGGTGTGGAGC 58.883 55.000 0.00 0.00 0.00 4.70
81 82 0.032912 TCGTATAGGGGTGTGGAGCA 60.033 55.000 0.00 0.00 0.00 4.26
82 83 0.104304 CGTATAGGGGTGTGGAGCAC 59.896 60.000 0.00 0.00 46.97 4.40
99 100 1.463674 CACCCAGGTGCTACAAATCC 58.536 55.000 3.41 0.00 39.39 3.01
100 101 0.035439 ACCCAGGTGCTACAAATCCG 60.035 55.000 0.00 0.00 0.00 4.18
101 102 1.376609 CCCAGGTGCTACAAATCCGC 61.377 60.000 0.00 0.00 0.00 5.54
102 103 0.392998 CCAGGTGCTACAAATCCGCT 60.393 55.000 0.00 0.00 0.00 5.52
103 104 1.453155 CAGGTGCTACAAATCCGCTT 58.547 50.000 0.00 0.00 0.00 4.68
104 105 1.398390 CAGGTGCTACAAATCCGCTTC 59.602 52.381 0.00 0.00 0.00 3.86
105 106 0.733150 GGTGCTACAAATCCGCTTCC 59.267 55.000 0.00 0.00 0.00 3.46
106 107 0.733150 GTGCTACAAATCCGCTTCCC 59.267 55.000 0.00 0.00 0.00 3.97
107 108 0.326595 TGCTACAAATCCGCTTCCCA 59.673 50.000 0.00 0.00 0.00 4.37
136 137 1.238439 CACTAGGTTGTTGTGGGCTG 58.762 55.000 0.00 0.00 0.00 4.85
152 153 0.318441 GCTGTTTTTGAGGGAAGGCC 59.682 55.000 0.00 0.00 0.00 5.19
182 188 3.744426 GCTCTTCGGCTAACTTGTTTACA 59.256 43.478 0.00 0.00 0.00 2.41
202 208 2.502538 CAGAATGGACATTTGGCCCAAT 59.497 45.455 0.00 0.00 44.80 3.16
243 249 4.343231 TGGCACCTATGTTGAATGTTGAT 58.657 39.130 0.00 0.00 0.00 2.57
244 250 5.504853 TGGCACCTATGTTGAATGTTGATA 58.495 37.500 0.00 0.00 0.00 2.15
245 251 6.128486 TGGCACCTATGTTGAATGTTGATAT 58.872 36.000 0.00 0.00 0.00 1.63
246 252 6.606796 TGGCACCTATGTTGAATGTTGATATT 59.393 34.615 0.00 0.00 0.00 1.28
247 253 7.123997 TGGCACCTATGTTGAATGTTGATATTT 59.876 33.333 0.00 0.00 0.00 1.40
248 254 7.649306 GGCACCTATGTTGAATGTTGATATTTC 59.351 37.037 0.00 0.00 0.00 2.17
249 255 7.649306 GCACCTATGTTGAATGTTGATATTTCC 59.351 37.037 0.00 0.00 0.00 3.13
250 256 8.137437 CACCTATGTTGAATGTTGATATTTCCC 58.863 37.037 0.00 0.00 0.00 3.97
251 257 7.287696 ACCTATGTTGAATGTTGATATTTCCCC 59.712 37.037 0.00 0.00 0.00 4.81
252 258 7.287466 CCTATGTTGAATGTTGATATTTCCCCA 59.713 37.037 0.00 0.00 0.00 4.96
253 259 6.924913 TGTTGAATGTTGATATTTCCCCAA 57.075 33.333 0.00 0.00 0.00 4.12
254 260 7.308450 TGTTGAATGTTGATATTTCCCCAAA 57.692 32.000 0.00 0.00 0.00 3.28
255 261 7.739825 TGTTGAATGTTGATATTTCCCCAAAA 58.260 30.769 0.00 0.00 0.00 2.44
256 262 8.213679 TGTTGAATGTTGATATTTCCCCAAAAA 58.786 29.630 0.00 0.00 0.00 1.94
285 291 5.248248 TCTGTTGAATGTTGAGATACCAGGA 59.752 40.000 0.00 0.00 0.00 3.86
291 297 2.111384 GTTGAGATACCAGGAGGCAGA 58.889 52.381 0.00 0.00 39.06 4.26
294 300 2.178764 TGAGATACCAGGAGGCAGATCT 59.821 50.000 0.00 0.00 39.06 2.75
295 301 2.562298 GAGATACCAGGAGGCAGATCTG 59.438 54.545 18.84 18.84 39.06 2.90
297 303 2.550277 TACCAGGAGGCAGATCTGAA 57.450 50.000 27.04 0.00 39.06 3.02
338 344 7.288810 TGCTTTTATTGACTCCAAATGAAGT 57.711 32.000 0.00 0.00 35.67 3.01
346 352 8.641498 ATTGACTCCAAATGAAGTATCAAGTT 57.359 30.769 0.00 0.00 35.01 2.66
372 378 2.136298 ACACAATGAACACACACCCA 57.864 45.000 0.00 0.00 0.00 4.51
400 406 7.686371 GCATATGCATAGCTAGGATCTACACAT 60.686 40.741 22.84 3.82 41.59 3.21
416 422 6.003326 TCTACACATCCAACACAATCACATT 58.997 36.000 0.00 0.00 0.00 2.71
536 544 9.288576 CCTAAATTGATATATTGACCTCAAGCA 57.711 33.333 0.00 0.00 39.47 3.91
550 558 6.932960 TGACCTCAAGCACTGATATATTGATG 59.067 38.462 0.00 0.00 32.14 3.07
597 615 1.593750 CTCCATCGGCTAGCTGCAC 60.594 63.158 19.27 0.00 45.15 4.57
774 813 3.742882 CGATGAAACCGATCTGCACATAT 59.257 43.478 0.00 0.00 0.00 1.78
775 814 4.923281 CGATGAAACCGATCTGCACATATA 59.077 41.667 0.00 0.00 0.00 0.86
812 851 0.034756 TTGCTAGCTTGCACCGAAGA 59.965 50.000 22.57 4.02 43.20 2.87
833 876 1.897560 AGCTAGGGACAAGCAAACAC 58.102 50.000 0.00 0.00 42.62 3.32
844 887 2.559998 AGCAAACACAAACACCGAAG 57.440 45.000 0.00 0.00 0.00 3.79
883 926 1.361993 GGTCGCAACCAAATGTGCA 59.638 52.632 0.00 0.00 45.68 4.57
913 956 3.520691 TCTCACCCTACATATACGCCT 57.479 47.619 0.00 0.00 0.00 5.52
921 964 0.959553 ACATATACGCCTCCAGTCGG 59.040 55.000 0.00 0.00 0.00 4.79
1007 1051 0.742990 CTCGTTAAGGCAATGGCGGA 60.743 55.000 0.00 0.00 42.47 5.54
1044 1088 1.577922 CTTCGTCAGTCCGTTCGGA 59.422 57.895 10.00 10.00 0.00 4.55
1056 1100 2.975799 TTCGGAAACAGGGTGCGC 60.976 61.111 0.00 0.00 0.00 6.09
1080 1124 2.815647 CTGGCGAAGAAGGGCGTC 60.816 66.667 0.00 0.00 0.00 5.19
1108 1152 2.125512 AGACGGCCGAGAACATGC 60.126 61.111 35.90 9.82 0.00 4.06
1170 1214 1.918800 CAAGGTCCCCGTCCTCCTT 60.919 63.158 0.00 0.00 40.38 3.36
1231 1275 1.153901 TTCATCGACGAGGCGTTCC 60.154 57.895 4.29 0.00 41.37 3.62
1316 1366 1.336887 CGTGGACACCAAGGTAGAGTG 60.337 57.143 0.00 0.00 34.18 3.51
1322 1372 4.020485 GGACACCAAGGTAGAGTGTACATT 60.020 45.833 0.00 0.00 44.45 2.71
1338 1388 2.786777 ACATTCACTGATTCAGCTGCA 58.213 42.857 13.64 0.00 34.37 4.41
1354 1404 0.532115 TGCATACGAAGCTGCTCTCA 59.468 50.000 1.00 0.00 39.74 3.27
1490 1540 1.371558 GTTCAAGACGCTGGAGGGT 59.628 57.895 0.00 0.00 44.25 4.34
1743 1793 0.037232 GCACTTTGGCCTCGAGTAGT 60.037 55.000 12.31 3.88 0.00 2.73
1783 1833 1.671469 CGTACGTCGGTATGATGAGC 58.329 55.000 7.22 0.00 37.77 4.26
1833 1899 2.369870 GCAATCAGCACTTGCATGC 58.630 52.632 11.82 11.82 46.44 4.06
1918 2033 8.015658 GTCTCAGTCGTTTGTGCTTTTATTATT 58.984 33.333 0.00 0.00 0.00 1.40
1919 2034 8.564574 TCTCAGTCGTTTGTGCTTTTATTATTT 58.435 29.630 0.00 0.00 0.00 1.40
1920 2035 8.500837 TCAGTCGTTTGTGCTTTTATTATTTG 57.499 30.769 0.00 0.00 0.00 2.32
1921 2036 8.132362 TCAGTCGTTTGTGCTTTTATTATTTGT 58.868 29.630 0.00 0.00 0.00 2.83
1945 2060 3.006756 TACTGCTGGCTCCGTGCTC 62.007 63.158 0.00 0.00 42.39 4.26
2040 2163 6.419791 TGTGTACCGGATCAAGGAATAAAAT 58.580 36.000 9.46 0.00 0.00 1.82
2067 2196 3.730662 GCACGACACATGTTGTTCTGTTT 60.731 43.478 0.00 0.00 40.52 2.83
2069 2198 5.564768 CACGACACATGTTGTTCTGTTTTA 58.435 37.500 0.00 0.00 40.52 1.52
2098 2235 0.249699 AATCGTTCCAGCGTGTGTGA 60.250 50.000 0.00 0.00 0.00 3.58
2145 2282 2.815647 CTTCCGAGGCTGCCGAAC 60.816 66.667 13.96 8.17 0.00 3.95
2148 2285 2.668185 TTCCGAGGCTGCCGAACAAA 62.668 55.000 13.96 2.84 0.00 2.83
2231 2369 7.534282 TGCGTAATTCTGAATTGCATTTCTTA 58.466 30.769 24.27 8.94 33.72 2.10
2232 2370 8.190122 TGCGTAATTCTGAATTGCATTTCTTAT 58.810 29.630 24.27 9.18 33.72 1.73
2233 2371 9.023967 GCGTAATTCTGAATTGCATTTCTTATT 57.976 29.630 24.27 16.36 33.72 1.40
2239 2377 7.475015 TCTGAATTGCATTTCTTATTCTTCGG 58.525 34.615 19.12 0.00 0.00 4.30
2240 2378 7.121168 TCTGAATTGCATTTCTTATTCTTCGGT 59.879 33.333 19.12 0.00 0.00 4.69
2241 2379 7.601856 TGAATTGCATTTCTTATTCTTCGGTT 58.398 30.769 19.12 0.00 0.00 4.44
2242 2380 8.735315 TGAATTGCATTTCTTATTCTTCGGTTA 58.265 29.630 19.12 0.00 0.00 2.85
2243 2381 9.736023 GAATTGCATTTCTTATTCTTCGGTTAT 57.264 29.630 12.92 0.00 0.00 1.89
2246 2384 5.915196 GCATTTCTTATTCTTCGGTTATGCC 59.085 40.000 0.00 0.00 31.10 4.40
2249 2387 7.696992 TTTCTTATTCTTCGGTTATGCCTTT 57.303 32.000 0.00 0.00 34.25 3.11
2268 2406 6.966435 CCTTTTGGCATCGTATTTGAAATT 57.034 33.333 0.00 0.00 0.00 1.82
2271 2409 8.930760 CCTTTTGGCATCGTATTTGAAATTTTA 58.069 29.630 0.00 0.00 0.00 1.52
2274 2412 9.482627 TTTGGCATCGTATTTGAAATTTTAAGT 57.517 25.926 0.00 0.00 0.00 2.24
2275 2413 9.482627 TTGGCATCGTATTTGAAATTTTAAGTT 57.517 25.926 0.00 0.00 0.00 2.66
2276 2414 9.482627 TGGCATCGTATTTGAAATTTTAAGTTT 57.517 25.926 0.00 0.00 0.00 2.66
2277 2415 9.952341 GGCATCGTATTTGAAATTTTAAGTTTC 57.048 29.630 6.07 6.07 36.39 2.78
2278 2416 9.656834 GCATCGTATTTGAAATTTTAAGTTTCG 57.343 29.630 8.09 1.52 38.18 3.46
2288 2426 9.902196 TGAAATTTTAAGTTTCGAATTACTCCC 57.098 29.630 0.00 0.00 38.18 4.30
2291 2429 7.677454 TTTTAAGTTTCGAATTACTCCCTCC 57.323 36.000 0.00 0.00 0.00 4.30
2292 2430 3.521947 AGTTTCGAATTACTCCCTCCG 57.478 47.619 0.00 0.00 0.00 4.63
2293 2431 2.830321 AGTTTCGAATTACTCCCTCCGT 59.170 45.455 0.00 0.00 0.00 4.69
2294 2432 3.119209 AGTTTCGAATTACTCCCTCCGTC 60.119 47.826 0.00 0.00 0.00 4.79
2295 2433 1.396653 TCGAATTACTCCCTCCGTCC 58.603 55.000 0.00 0.00 0.00 4.79
2296 2434 0.388294 CGAATTACTCCCTCCGTCCC 59.612 60.000 0.00 0.00 0.00 4.46
2297 2435 1.492764 GAATTACTCCCTCCGTCCCA 58.507 55.000 0.00 0.00 0.00 4.37
2298 2436 2.047830 GAATTACTCCCTCCGTCCCAT 58.952 52.381 0.00 0.00 0.00 4.00
2299 2437 3.236896 GAATTACTCCCTCCGTCCCATA 58.763 50.000 0.00 0.00 0.00 2.74
2300 2438 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
2301 2439 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
2302 2440 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
2303 2441 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2304 2442 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2305 2443 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2306 2444 5.408824 ACTCCCTCCGTCCCATAATATAAA 58.591 41.667 0.00 0.00 0.00 1.40
2307 2445 5.847817 ACTCCCTCCGTCCCATAATATAAAA 59.152 40.000 0.00 0.00 0.00 1.52
2308 2446 6.013639 ACTCCCTCCGTCCCATAATATAAAAG 60.014 42.308 0.00 0.00 0.00 2.27
2309 2447 4.941873 CCCTCCGTCCCATAATATAAAAGC 59.058 45.833 0.00 0.00 0.00 3.51
2310 2448 4.630069 CCTCCGTCCCATAATATAAAAGCG 59.370 45.833 0.00 0.00 0.00 4.68
2311 2449 5.217978 TCCGTCCCATAATATAAAAGCGT 57.782 39.130 0.00 0.00 0.00 5.07
2312 2450 5.613329 TCCGTCCCATAATATAAAAGCGTT 58.387 37.500 0.00 0.00 0.00 4.84
2313 2451 6.056884 TCCGTCCCATAATATAAAAGCGTTT 58.943 36.000 2.53 2.53 0.00 3.60
2314 2452 6.543100 TCCGTCCCATAATATAAAAGCGTTTT 59.457 34.615 2.19 1.29 36.67 2.43
2315 2453 7.067251 TCCGTCCCATAATATAAAAGCGTTTTT 59.933 33.333 14.50 14.50 39.69 1.94
2316 2454 7.166804 CCGTCCCATAATATAAAAGCGTTTTTG 59.833 37.037 18.77 2.23 37.12 2.44
2317 2455 7.911205 CGTCCCATAATATAAAAGCGTTTTTGA 59.089 33.333 18.77 8.06 37.12 2.69
2318 2456 9.575783 GTCCCATAATATAAAAGCGTTTTTGAA 57.424 29.630 18.77 7.91 37.12 2.69
2319 2457 9.796120 TCCCATAATATAAAAGCGTTTTTGAAG 57.204 29.630 18.77 3.45 37.12 3.02
2320 2458 9.030301 CCCATAATATAAAAGCGTTTTTGAAGG 57.970 33.333 18.77 10.62 37.12 3.46
2321 2459 9.796120 CCATAATATAAAAGCGTTTTTGAAGGA 57.204 29.630 18.77 0.07 37.12 3.36
2325 2463 9.705290 AATATAAAAGCGTTTTTGAAGGACAAT 57.295 25.926 18.77 5.50 37.12 2.71
2326 2464 5.717038 AAAAGCGTTTTTGAAGGACAATG 57.283 34.783 9.31 0.00 38.36 2.82
2327 2465 4.647424 AAGCGTTTTTGAAGGACAATGA 57.353 36.364 0.00 0.00 38.36 2.57
2328 2466 4.853924 AGCGTTTTTGAAGGACAATGAT 57.146 36.364 0.00 0.00 38.36 2.45
2329 2467 5.200368 AGCGTTTTTGAAGGACAATGATT 57.800 34.783 0.00 0.00 38.36 2.57
2330 2468 6.325919 AGCGTTTTTGAAGGACAATGATTA 57.674 33.333 0.00 0.00 38.36 1.75
2331 2469 6.744112 AGCGTTTTTGAAGGACAATGATTAA 58.256 32.000 0.00 0.00 38.36 1.40
2332 2470 6.863126 AGCGTTTTTGAAGGACAATGATTAAG 59.137 34.615 0.00 0.00 38.36 1.85
2333 2471 6.089417 GCGTTTTTGAAGGACAATGATTAAGG 59.911 38.462 0.00 0.00 38.36 2.69
2334 2472 7.145323 CGTTTTTGAAGGACAATGATTAAGGT 58.855 34.615 0.00 0.00 38.36 3.50
2335 2473 8.293867 CGTTTTTGAAGGACAATGATTAAGGTA 58.706 33.333 0.00 0.00 38.36 3.08
2338 2476 9.753674 TTTTGAAGGACAATGATTAAGGTATCT 57.246 29.630 0.00 0.00 38.36 1.98
2344 2482 8.317679 AGGACAATGATTAAGGTATCTATCTGC 58.682 37.037 0.00 0.00 0.00 4.26
2345 2483 8.317679 GGACAATGATTAAGGTATCTATCTGCT 58.682 37.037 0.00 0.00 0.00 4.24
2346 2484 9.364989 GACAATGATTAAGGTATCTATCTGCTC 57.635 37.037 0.00 0.00 0.00 4.26
2347 2485 8.031864 ACAATGATTAAGGTATCTATCTGCTCG 58.968 37.037 0.00 0.00 0.00 5.03
2348 2486 7.946381 ATGATTAAGGTATCTATCTGCTCGA 57.054 36.000 0.00 0.00 0.00 4.04
2349 2487 7.384439 TGATTAAGGTATCTATCTGCTCGAG 57.616 40.000 8.45 8.45 0.00 4.04
2350 2488 5.630661 TTAAGGTATCTATCTGCTCGAGC 57.369 43.478 30.42 30.42 42.50 5.03
2351 2489 2.080693 AGGTATCTATCTGCTCGAGCG 58.919 52.381 30.75 24.28 45.83 5.03
2352 2490 1.807742 GGTATCTATCTGCTCGAGCGT 59.192 52.381 30.75 21.30 45.83 5.07
2353 2491 3.001414 GGTATCTATCTGCTCGAGCGTA 58.999 50.000 30.75 21.81 45.83 4.42
2354 2492 3.623960 GGTATCTATCTGCTCGAGCGTAT 59.376 47.826 30.75 26.32 45.83 3.06
2355 2493 3.755965 ATCTATCTGCTCGAGCGTATG 57.244 47.619 30.75 20.17 45.83 2.39
2356 2494 2.767505 TCTATCTGCTCGAGCGTATGA 58.232 47.619 30.75 24.13 45.83 2.15
2357 2495 2.739379 TCTATCTGCTCGAGCGTATGAG 59.261 50.000 30.75 21.93 45.83 2.90
2368 2506 1.941325 GCGTATGAGCTGGCTAAAGT 58.059 50.000 0.00 0.00 0.00 2.66
2369 2507 1.861575 GCGTATGAGCTGGCTAAAGTC 59.138 52.381 0.00 0.00 0.00 3.01
2370 2508 2.738643 GCGTATGAGCTGGCTAAAGTCA 60.739 50.000 0.00 0.00 0.00 3.41
2371 2509 3.521560 CGTATGAGCTGGCTAAAGTCAA 58.478 45.455 0.00 0.00 0.00 3.18
2372 2510 3.307242 CGTATGAGCTGGCTAAAGTCAAC 59.693 47.826 0.00 0.00 0.00 3.18
2373 2511 2.928801 TGAGCTGGCTAAAGTCAACA 57.071 45.000 0.00 0.00 0.00 3.33
2374 2512 3.207265 TGAGCTGGCTAAAGTCAACAA 57.793 42.857 0.00 0.00 0.00 2.83
2375 2513 3.141398 TGAGCTGGCTAAAGTCAACAAG 58.859 45.455 0.00 0.00 0.00 3.16
2376 2514 3.181455 TGAGCTGGCTAAAGTCAACAAGA 60.181 43.478 0.00 0.00 0.00 3.02
2377 2515 3.815401 GAGCTGGCTAAAGTCAACAAGAA 59.185 43.478 0.00 0.00 0.00 2.52
2378 2516 4.207165 AGCTGGCTAAAGTCAACAAGAAA 58.793 39.130 0.00 0.00 0.00 2.52
2379 2517 4.276926 AGCTGGCTAAAGTCAACAAGAAAG 59.723 41.667 0.00 0.00 0.00 2.62
2380 2518 4.275936 GCTGGCTAAAGTCAACAAGAAAGA 59.724 41.667 0.00 0.00 0.00 2.52
2381 2519 5.048434 GCTGGCTAAAGTCAACAAGAAAGAT 60.048 40.000 0.00 0.00 0.00 2.40
2382 2520 6.317789 TGGCTAAAGTCAACAAGAAAGATG 57.682 37.500 0.00 0.00 0.00 2.90
2383 2521 5.157067 GGCTAAAGTCAACAAGAAAGATGC 58.843 41.667 0.00 0.00 0.00 3.91
2384 2522 4.848299 GCTAAAGTCAACAAGAAAGATGCG 59.152 41.667 0.00 0.00 0.00 4.73
2385 2523 4.900635 AAAGTCAACAAGAAAGATGCGT 57.099 36.364 0.00 0.00 0.00 5.24
2386 2524 3.885484 AGTCAACAAGAAAGATGCGTG 57.115 42.857 0.00 0.00 0.00 5.34
2387 2525 3.206150 AGTCAACAAGAAAGATGCGTGT 58.794 40.909 0.00 0.00 0.00 4.49
2388 2526 4.377021 AGTCAACAAGAAAGATGCGTGTA 58.623 39.130 0.00 0.00 0.00 2.90
2389 2527 4.449068 AGTCAACAAGAAAGATGCGTGTAG 59.551 41.667 0.00 0.00 0.00 2.74
2390 2528 3.745975 TCAACAAGAAAGATGCGTGTAGG 59.254 43.478 0.00 0.00 0.00 3.18
2391 2529 2.076863 ACAAGAAAGATGCGTGTAGGC 58.923 47.619 0.00 0.00 0.00 3.93
2392 2530 1.061131 CAAGAAAGATGCGTGTAGGCG 59.939 52.381 0.00 0.00 35.06 5.52
2414 2552 2.431942 CGAGGTGTAACGCGGCTT 60.432 61.111 12.47 0.00 38.12 4.35
2415 2553 2.726691 CGAGGTGTAACGCGGCTTG 61.727 63.158 12.47 0.00 38.12 4.01
2416 2554 1.666872 GAGGTGTAACGCGGCTTGT 60.667 57.895 12.47 0.00 38.12 3.16
2417 2555 0.388907 GAGGTGTAACGCGGCTTGTA 60.389 55.000 12.47 0.00 38.12 2.41
2418 2556 0.248289 AGGTGTAACGCGGCTTGTAT 59.752 50.000 12.47 0.00 38.12 2.29
2419 2557 1.477700 AGGTGTAACGCGGCTTGTATA 59.522 47.619 12.47 0.00 38.12 1.47
2420 2558 1.856597 GGTGTAACGCGGCTTGTATAG 59.143 52.381 12.47 0.00 38.12 1.31
2421 2559 1.856597 GTGTAACGCGGCTTGTATAGG 59.143 52.381 12.47 0.00 0.00 2.57
2422 2560 0.857287 GTAACGCGGCTTGTATAGGC 59.143 55.000 12.47 0.00 45.60 3.93
2423 2561 0.249573 TAACGCGGCTTGTATAGGCC 60.250 55.000 12.47 2.16 46.31 5.19
2429 2567 2.614829 GGCTTGTATAGGCCGAGAAA 57.385 50.000 0.00 0.00 43.40 2.52
2430 2568 2.914059 GGCTTGTATAGGCCGAGAAAA 58.086 47.619 0.00 0.00 43.40 2.29
2431 2569 3.477530 GGCTTGTATAGGCCGAGAAAAT 58.522 45.455 0.00 0.00 43.40 1.82
2432 2570 3.251004 GGCTTGTATAGGCCGAGAAAATG 59.749 47.826 0.00 0.00 43.40 2.32
2433 2571 3.251004 GCTTGTATAGGCCGAGAAAATGG 59.749 47.826 0.00 0.00 0.00 3.16
2434 2572 4.451900 CTTGTATAGGCCGAGAAAATGGT 58.548 43.478 0.00 0.00 0.00 3.55
2435 2573 4.497291 TGTATAGGCCGAGAAAATGGTT 57.503 40.909 0.00 0.00 0.00 3.67
2436 2574 4.850680 TGTATAGGCCGAGAAAATGGTTT 58.149 39.130 0.00 0.00 0.00 3.27
2437 2575 5.258051 TGTATAGGCCGAGAAAATGGTTTT 58.742 37.500 0.00 0.00 35.12 2.43
2438 2576 5.712917 TGTATAGGCCGAGAAAATGGTTTTT 59.287 36.000 0.00 0.00 37.75 1.94
2439 2577 6.885376 TGTATAGGCCGAGAAAATGGTTTTTA 59.115 34.615 0.00 0.00 35.20 1.52
2440 2578 7.558444 TGTATAGGCCGAGAAAATGGTTTTTAT 59.442 33.333 0.00 0.00 35.20 1.40
2441 2579 9.059260 GTATAGGCCGAGAAAATGGTTTTTATA 57.941 33.333 0.00 0.00 35.20 0.98
2442 2580 8.706322 ATAGGCCGAGAAAATGGTTTTTATAT 57.294 30.769 0.00 0.00 35.20 0.86
2443 2581 7.039313 AGGCCGAGAAAATGGTTTTTATATC 57.961 36.000 0.00 0.00 35.20 1.63
2444 2582 6.040504 AGGCCGAGAAAATGGTTTTTATATCC 59.959 38.462 0.00 0.00 35.20 2.59
2445 2583 5.912955 GCCGAGAAAATGGTTTTTATATCCG 59.087 40.000 0.00 0.00 35.20 4.18
2446 2584 5.912955 CCGAGAAAATGGTTTTTATATCCGC 59.087 40.000 0.00 0.00 35.20 5.54
2447 2585 6.459024 CCGAGAAAATGGTTTTTATATCCGCA 60.459 38.462 0.00 0.00 35.20 5.69
2448 2586 6.970043 CGAGAAAATGGTTTTTATATCCGCAA 59.030 34.615 0.00 0.00 35.20 4.85
2449 2587 7.165812 CGAGAAAATGGTTTTTATATCCGCAAG 59.834 37.037 0.00 0.00 35.20 4.01
2450 2588 7.836842 AGAAAATGGTTTTTATATCCGCAAGT 58.163 30.769 0.00 0.00 35.20 3.16
2451 2589 8.311109 AGAAAATGGTTTTTATATCCGCAAGTT 58.689 29.630 0.00 0.00 35.20 2.66
2452 2590 8.840833 AAAATGGTTTTTATATCCGCAAGTTT 57.159 26.923 0.00 0.00 33.29 2.66
2453 2591 8.840833 AAATGGTTTTTATATCCGCAAGTTTT 57.159 26.923 0.00 0.00 0.00 2.43
2454 2592 8.840833 AATGGTTTTTATATCCGCAAGTTTTT 57.159 26.923 0.00 0.00 0.00 1.94
2483 2621 5.390613 GTGTAACGGTGAAGAATCAATTGG 58.609 41.667 5.42 0.00 37.30 3.16
2484 2622 3.575965 AACGGTGAAGAATCAATTGGC 57.424 42.857 5.42 0.00 37.30 4.52
2485 2623 2.513753 ACGGTGAAGAATCAATTGGCA 58.486 42.857 5.42 0.00 37.30 4.92
2486 2624 2.890311 ACGGTGAAGAATCAATTGGCAA 59.110 40.909 0.68 0.68 37.30 4.52
2487 2625 3.320541 ACGGTGAAGAATCAATTGGCAAA 59.679 39.130 3.01 0.00 37.30 3.68
2488 2626 4.021192 ACGGTGAAGAATCAATTGGCAAAT 60.021 37.500 3.01 0.00 37.30 2.32
2489 2627 4.327898 CGGTGAAGAATCAATTGGCAAATG 59.672 41.667 9.01 9.01 37.30 2.32
2490 2628 5.481105 GGTGAAGAATCAATTGGCAAATGA 58.519 37.500 19.42 19.42 37.30 2.57
2491 2629 6.110707 GGTGAAGAATCAATTGGCAAATGAT 58.889 36.000 21.97 21.97 37.30 2.45
2492 2630 6.596497 GGTGAAGAATCAATTGGCAAATGATT 59.404 34.615 32.73 32.73 37.30 2.57
2493 2631 7.120138 GGTGAAGAATCAATTGGCAAATGATTT 59.880 33.333 32.68 23.04 37.30 2.17
2494 2632 8.508875 GTGAAGAATCAATTGGCAAATGATTTT 58.491 29.630 32.68 27.28 37.30 1.82
2495 2633 9.069082 TGAAGAATCAATTGGCAAATGATTTTT 57.931 25.926 32.68 31.77 30.45 1.94
2496 2634 9.337091 GAAGAATCAATTGGCAAATGATTTTTG 57.663 29.630 33.52 20.45 30.45 2.44
2497 2635 8.398878 AGAATCAATTGGCAAATGATTTTTGT 57.601 26.923 32.68 18.22 30.45 2.83
2498 2636 8.852135 AGAATCAATTGGCAAATGATTTTTGTT 58.148 25.926 32.68 18.19 30.45 2.83
2499 2637 8.804688 AATCAATTGGCAAATGATTTTTGTTG 57.195 26.923 29.00 14.74 0.00 3.33
2500 2638 6.207213 TCAATTGGCAAATGATTTTTGTTGC 58.793 32.000 13.77 0.00 44.43 4.17
2501 2639 3.874400 TGGCAAATGATTTTTGTTGCG 57.126 38.095 0.00 0.00 45.76 4.85
2502 2640 2.032204 TGGCAAATGATTTTTGTTGCGC 60.032 40.909 0.00 0.00 45.76 6.09
2503 2641 2.032204 GGCAAATGATTTTTGTTGCGCA 60.032 40.909 5.66 5.66 45.76 6.09
2504 2642 3.547613 GGCAAATGATTTTTGTTGCGCAA 60.548 39.130 21.02 21.02 45.76 4.85
2505 2643 4.220572 GCAAATGATTTTTGTTGCGCAAT 58.779 34.783 27.79 9.03 37.25 3.56
2506 2644 5.380651 GCAAATGATTTTTGTTGCGCAATA 58.619 33.333 27.79 21.93 37.25 1.90
2507 2645 5.281143 GCAAATGATTTTTGTTGCGCAATAC 59.719 36.000 27.79 16.14 37.25 1.89
2508 2646 6.361114 CAAATGATTTTTGTTGCGCAATACA 58.639 32.000 27.79 18.90 36.89 2.29
2509 2647 5.766702 ATGATTTTTGTTGCGCAATACAG 57.233 34.783 27.79 0.00 36.89 2.74
2510 2648 4.864633 TGATTTTTGTTGCGCAATACAGA 58.135 34.783 27.79 13.83 36.89 3.41
2511 2649 4.916831 TGATTTTTGTTGCGCAATACAGAG 59.083 37.500 27.79 0.00 36.89 3.35
2512 2650 4.560136 TTTTTGTTGCGCAATACAGAGA 57.440 36.364 27.79 8.98 36.89 3.10
2513 2651 3.811722 TTTGTTGCGCAATACAGAGAG 57.188 42.857 27.79 0.00 36.89 3.20
2514 2652 2.455674 TGTTGCGCAATACAGAGAGT 57.544 45.000 27.79 0.00 0.00 3.24
2515 2653 2.068519 TGTTGCGCAATACAGAGAGTG 58.931 47.619 27.79 0.00 0.00 3.51
2516 2654 1.394917 GTTGCGCAATACAGAGAGTGG 59.605 52.381 27.79 0.00 0.00 4.00
2517 2655 0.894835 TGCGCAATACAGAGAGTGGA 59.105 50.000 8.16 0.00 0.00 4.02
2518 2656 1.134995 TGCGCAATACAGAGAGTGGAG 60.135 52.381 8.16 0.00 0.00 3.86
2519 2657 1.135139 GCGCAATACAGAGAGTGGAGA 59.865 52.381 0.30 0.00 0.00 3.71
2520 2658 2.223923 GCGCAATACAGAGAGTGGAGAT 60.224 50.000 0.30 0.00 0.00 2.75
2521 2659 3.379240 CGCAATACAGAGAGTGGAGATG 58.621 50.000 0.00 0.00 0.00 2.90
2522 2660 3.067320 CGCAATACAGAGAGTGGAGATGA 59.933 47.826 0.00 0.00 0.00 2.92
2523 2661 4.440663 CGCAATACAGAGAGTGGAGATGAA 60.441 45.833 0.00 0.00 0.00 2.57
2524 2662 5.423015 GCAATACAGAGAGTGGAGATGAAA 58.577 41.667 0.00 0.00 0.00 2.69
2525 2663 6.054295 GCAATACAGAGAGTGGAGATGAAAT 58.946 40.000 0.00 0.00 0.00 2.17
2526 2664 6.018098 GCAATACAGAGAGTGGAGATGAAATG 60.018 42.308 0.00 0.00 0.00 2.32
2527 2665 3.871485 ACAGAGAGTGGAGATGAAATGC 58.129 45.455 0.00 0.00 0.00 3.56
2528 2666 3.262660 ACAGAGAGTGGAGATGAAATGCA 59.737 43.478 0.00 0.00 0.00 3.96
2529 2667 4.259356 CAGAGAGTGGAGATGAAATGCAA 58.741 43.478 0.00 0.00 0.00 4.08
2530 2668 4.094590 CAGAGAGTGGAGATGAAATGCAAC 59.905 45.833 0.00 0.00 0.00 4.17
2531 2669 3.350833 AGAGTGGAGATGAAATGCAACC 58.649 45.455 0.00 0.00 0.00 3.77
2532 2670 2.086869 AGTGGAGATGAAATGCAACCG 58.913 47.619 0.00 0.00 0.00 4.44
2533 2671 1.812571 GTGGAGATGAAATGCAACCGT 59.187 47.619 0.00 0.00 0.00 4.83
2534 2672 2.228822 GTGGAGATGAAATGCAACCGTT 59.771 45.455 0.00 0.00 0.00 4.44
2535 2673 2.228582 TGGAGATGAAATGCAACCGTTG 59.771 45.455 6.91 6.91 0.00 4.10
2545 2683 2.330254 CAACCGTTGCATGTCAGGT 58.670 52.632 0.00 0.00 36.66 4.00
2546 2684 0.667993 CAACCGTTGCATGTCAGGTT 59.332 50.000 0.00 9.95 45.06 3.50
2547 2685 1.066908 CAACCGTTGCATGTCAGGTTT 59.933 47.619 12.15 0.25 42.63 3.27
2548 2686 0.667993 ACCGTTGCATGTCAGGTTTG 59.332 50.000 0.00 0.00 0.00 2.93
2549 2687 0.667993 CCGTTGCATGTCAGGTTTGT 59.332 50.000 0.00 0.00 0.00 2.83
2550 2688 1.876799 CCGTTGCATGTCAGGTTTGTA 59.123 47.619 0.00 0.00 0.00 2.41
2551 2689 2.487762 CCGTTGCATGTCAGGTTTGTAT 59.512 45.455 0.00 0.00 0.00 2.29
2552 2690 3.426159 CCGTTGCATGTCAGGTTTGTATC 60.426 47.826 0.00 0.00 0.00 2.24
2553 2691 3.188254 CGTTGCATGTCAGGTTTGTATCA 59.812 43.478 0.00 0.00 0.00 2.15
2554 2692 4.669965 CGTTGCATGTCAGGTTTGTATCAG 60.670 45.833 0.00 0.00 0.00 2.90
2555 2693 2.749076 TGCATGTCAGGTTTGTATCAGC 59.251 45.455 0.00 0.00 0.00 4.26
2556 2694 3.012518 GCATGTCAGGTTTGTATCAGCT 58.987 45.455 0.00 0.00 0.00 4.24
2557 2695 3.064545 GCATGTCAGGTTTGTATCAGCTC 59.935 47.826 0.00 0.00 0.00 4.09
2558 2696 4.511527 CATGTCAGGTTTGTATCAGCTCT 58.488 43.478 0.00 0.00 0.00 4.09
2559 2697 4.623932 TGTCAGGTTTGTATCAGCTCTT 57.376 40.909 0.00 0.00 0.00 2.85
2560 2698 5.738619 TGTCAGGTTTGTATCAGCTCTTA 57.261 39.130 0.00 0.00 0.00 2.10
2561 2699 5.724328 TGTCAGGTTTGTATCAGCTCTTAG 58.276 41.667 0.00 0.00 0.00 2.18
2562 2700 5.246203 TGTCAGGTTTGTATCAGCTCTTAGT 59.754 40.000 0.00 0.00 0.00 2.24
2563 2701 6.166982 GTCAGGTTTGTATCAGCTCTTAGTT 58.833 40.000 0.00 0.00 0.00 2.24
2564 2702 7.039293 TGTCAGGTTTGTATCAGCTCTTAGTTA 60.039 37.037 0.00 0.00 0.00 2.24
2565 2703 7.982354 GTCAGGTTTGTATCAGCTCTTAGTTAT 59.018 37.037 0.00 0.00 0.00 1.89
2566 2704 7.981789 TCAGGTTTGTATCAGCTCTTAGTTATG 59.018 37.037 0.00 0.00 0.00 1.90
2567 2705 7.981789 CAGGTTTGTATCAGCTCTTAGTTATGA 59.018 37.037 0.00 0.00 0.00 2.15
2568 2706 8.200792 AGGTTTGTATCAGCTCTTAGTTATGAG 58.799 37.037 0.00 0.00 0.00 2.90
2569 2707 8.198109 GGTTTGTATCAGCTCTTAGTTATGAGA 58.802 37.037 6.31 0.00 32.44 3.27
2570 2708 9.757227 GTTTGTATCAGCTCTTAGTTATGAGAT 57.243 33.333 6.31 0.00 32.44 2.75
2576 2714 8.389779 TCAGCTCTTAGTTATGAGATAGAGTG 57.610 38.462 6.31 0.00 33.42 3.51
2577 2715 7.446931 TCAGCTCTTAGTTATGAGATAGAGTGG 59.553 40.741 6.31 0.00 33.42 4.00
2578 2716 7.230510 CAGCTCTTAGTTATGAGATAGAGTGGT 59.769 40.741 6.31 0.00 33.42 4.16
2579 2717 7.447238 AGCTCTTAGTTATGAGATAGAGTGGTC 59.553 40.741 6.31 0.00 33.42 4.02
2580 2718 7.572353 GCTCTTAGTTATGAGATAGAGTGGTCG 60.572 44.444 6.31 0.00 33.42 4.79
2581 2719 7.506971 TCTTAGTTATGAGATAGAGTGGTCGA 58.493 38.462 0.00 0.00 0.00 4.20
2582 2720 7.658167 TCTTAGTTATGAGATAGAGTGGTCGAG 59.342 40.741 0.00 0.00 0.00 4.04
2583 2721 5.686753 AGTTATGAGATAGAGTGGTCGAGT 58.313 41.667 0.00 0.00 0.00 4.18
2584 2722 5.529430 AGTTATGAGATAGAGTGGTCGAGTG 59.471 44.000 0.00 0.00 0.00 3.51
2585 2723 2.644676 TGAGATAGAGTGGTCGAGTGG 58.355 52.381 0.00 0.00 0.00 4.00
2586 2724 2.238898 TGAGATAGAGTGGTCGAGTGGA 59.761 50.000 0.00 0.00 0.00 4.02
2587 2725 2.875933 GAGATAGAGTGGTCGAGTGGAG 59.124 54.545 0.00 0.00 0.00 3.86
2588 2726 2.506231 AGATAGAGTGGTCGAGTGGAGA 59.494 50.000 0.00 0.00 0.00 3.71
2589 2727 2.873094 TAGAGTGGTCGAGTGGAGAA 57.127 50.000 0.00 0.00 0.00 2.87
2590 2728 1.996798 AGAGTGGTCGAGTGGAGAAA 58.003 50.000 0.00 0.00 0.00 2.52
2591 2729 2.317040 AGAGTGGTCGAGTGGAGAAAA 58.683 47.619 0.00 0.00 0.00 2.29
2592 2730 2.297597 AGAGTGGTCGAGTGGAGAAAAG 59.702 50.000 0.00 0.00 0.00 2.27
2593 2731 2.296471 GAGTGGTCGAGTGGAGAAAAGA 59.704 50.000 0.00 0.00 0.00 2.52
2594 2732 2.036089 AGTGGTCGAGTGGAGAAAAGAC 59.964 50.000 0.00 0.00 0.00 3.01
2595 2733 1.000607 TGGTCGAGTGGAGAAAAGACG 60.001 52.381 0.00 0.00 0.00 4.18
2596 2734 1.669211 GGTCGAGTGGAGAAAAGACGG 60.669 57.143 0.00 0.00 0.00 4.79
2597 2735 0.038526 TCGAGTGGAGAAAAGACGGC 60.039 55.000 0.00 0.00 0.00 5.68
2598 2736 1.014564 CGAGTGGAGAAAAGACGGCC 61.015 60.000 0.00 0.00 0.00 6.13
2599 2737 1.004918 AGTGGAGAAAAGACGGCCG 60.005 57.895 26.86 26.86 0.00 6.13
2600 2738 2.358247 TGGAGAAAAGACGGCCGC 60.358 61.111 28.58 18.62 0.00 6.53
2601 2739 3.488090 GGAGAAAAGACGGCCGCG 61.488 66.667 28.58 1.99 0.00 6.46
2602 2740 2.737376 GAGAAAAGACGGCCGCGT 60.737 61.111 28.58 13.86 0.00 6.01
2603 2741 3.011760 GAGAAAAGACGGCCGCGTG 62.012 63.158 28.58 0.00 0.00 5.34
2604 2742 3.039588 GAAAAGACGGCCGCGTGA 61.040 61.111 28.58 0.00 0.00 4.35
2605 2743 2.358247 AAAAGACGGCCGCGTGAT 60.358 55.556 28.58 4.48 0.00 3.06
2606 2744 1.908066 GAAAAGACGGCCGCGTGATT 61.908 55.000 28.58 14.45 0.00 2.57
2607 2745 1.512156 AAAAGACGGCCGCGTGATTT 61.512 50.000 28.58 16.42 0.00 2.17
2608 2746 1.908066 AAAGACGGCCGCGTGATTTC 61.908 55.000 28.58 13.81 0.00 2.17
2609 2747 2.781595 AAGACGGCCGCGTGATTTCT 62.782 55.000 28.58 16.19 0.00 2.52
2610 2748 2.358247 ACGGCCGCGTGATTTCTT 60.358 55.556 28.58 0.00 0.00 2.52
2611 2749 1.908066 GACGGCCGCGTGATTTCTTT 61.908 55.000 28.58 0.00 0.00 2.52
2612 2750 1.226018 CGGCCGCGTGATTTCTTTC 60.226 57.895 14.67 0.00 0.00 2.62
2613 2751 1.635663 CGGCCGCGTGATTTCTTTCT 61.636 55.000 14.67 0.00 0.00 2.52
2614 2752 0.521735 GGCCGCGTGATTTCTTTCTT 59.478 50.000 4.92 0.00 0.00 2.52
2615 2753 1.068541 GGCCGCGTGATTTCTTTCTTT 60.069 47.619 4.92 0.00 0.00 2.52
2616 2754 2.242564 GCCGCGTGATTTCTTTCTTTC 58.757 47.619 4.92 0.00 0.00 2.62
2617 2755 2.095718 GCCGCGTGATTTCTTTCTTTCT 60.096 45.455 4.92 0.00 0.00 2.52
2618 2756 3.609409 GCCGCGTGATTTCTTTCTTTCTT 60.609 43.478 4.92 0.00 0.00 2.52
2619 2757 4.378046 GCCGCGTGATTTCTTTCTTTCTTA 60.378 41.667 4.92 0.00 0.00 2.10
2620 2758 5.685841 CCGCGTGATTTCTTTCTTTCTTAA 58.314 37.500 4.92 0.00 0.00 1.85
2621 2759 6.140110 CCGCGTGATTTCTTTCTTTCTTAAA 58.860 36.000 4.92 0.00 0.00 1.52
2622 2760 6.635239 CCGCGTGATTTCTTTCTTTCTTAAAA 59.365 34.615 4.92 0.00 0.00 1.52
2623 2761 7.166804 CCGCGTGATTTCTTTCTTTCTTAAAAA 59.833 33.333 4.92 0.00 0.00 1.94
2671 2809 8.442632 AGTTAACCAGTTTCACTTAGTTAACC 57.557 34.615 21.97 12.69 45.33 2.85
2672 2810 8.048514 AGTTAACCAGTTTCACTTAGTTAACCA 58.951 33.333 21.97 0.00 45.33 3.67
2673 2811 6.937436 AACCAGTTTCACTTAGTTAACCAG 57.063 37.500 0.88 1.31 0.00 4.00
2674 2812 5.997843 ACCAGTTTCACTTAGTTAACCAGT 58.002 37.500 0.88 1.99 0.00 4.00
2675 2813 6.420638 ACCAGTTTCACTTAGTTAACCAGTT 58.579 36.000 0.88 0.00 0.00 3.16
2676 2814 6.888088 ACCAGTTTCACTTAGTTAACCAGTTT 59.112 34.615 0.88 0.00 0.00 2.66
2677 2815 7.066645 ACCAGTTTCACTTAGTTAACCAGTTTC 59.933 37.037 0.88 0.00 0.00 2.78
2678 2816 7.066525 CCAGTTTCACTTAGTTAACCAGTTTCA 59.933 37.037 0.88 0.00 0.00 2.69
2679 2817 8.455682 CAGTTTCACTTAGTTAACCAGTTTCAA 58.544 33.333 0.88 0.00 0.00 2.69
2680 2818 9.016438 AGTTTCACTTAGTTAACCAGTTTCAAA 57.984 29.630 0.88 2.07 0.00 2.69
2681 2819 9.628746 GTTTCACTTAGTTAACCAGTTTCAAAA 57.371 29.630 0.88 1.43 0.00 2.44
2683 2821 9.628746 TTCACTTAGTTAACCAGTTTCAAAAAC 57.371 29.630 0.88 0.00 0.00 2.43
2684 2822 8.794553 TCACTTAGTTAACCAGTTTCAAAAACA 58.205 29.630 0.88 0.00 0.00 2.83
2685 2823 9.072294 CACTTAGTTAACCAGTTTCAAAAACAG 57.928 33.333 0.88 0.00 0.00 3.16
2686 2824 9.016438 ACTTAGTTAACCAGTTTCAAAAACAGA 57.984 29.630 0.88 0.00 0.00 3.41
2687 2825 9.285770 CTTAGTTAACCAGTTTCAAAAACAGAC 57.714 33.333 0.88 0.00 0.00 3.51
2688 2826 7.462571 AGTTAACCAGTTTCAAAAACAGACT 57.537 32.000 0.88 0.00 0.00 3.24
2689 2827 7.892609 AGTTAACCAGTTTCAAAAACAGACTT 58.107 30.769 0.88 0.00 0.00 3.01
2690 2828 8.027189 AGTTAACCAGTTTCAAAAACAGACTTC 58.973 33.333 0.88 0.00 0.00 3.01
2691 2829 5.975693 ACCAGTTTCAAAAACAGACTTCA 57.024 34.783 5.46 0.00 0.00 3.02
2692 2830 5.709966 ACCAGTTTCAAAAACAGACTTCAC 58.290 37.500 5.46 0.00 0.00 3.18
2693 2831 5.476945 ACCAGTTTCAAAAACAGACTTCACT 59.523 36.000 5.46 0.00 0.00 3.41
2694 2832 6.030228 CCAGTTTCAAAAACAGACTTCACTC 58.970 40.000 5.46 0.00 0.00 3.51
2695 2833 6.349280 CCAGTTTCAAAAACAGACTTCACTCA 60.349 38.462 5.46 0.00 0.00 3.41
2696 2834 7.253422 CAGTTTCAAAAACAGACTTCACTCAT 58.747 34.615 5.46 0.00 0.00 2.90
2697 2835 7.756722 CAGTTTCAAAAACAGACTTCACTCATT 59.243 33.333 5.46 0.00 0.00 2.57
2698 2836 8.306761 AGTTTCAAAAACAGACTTCACTCATTT 58.693 29.630 5.46 0.00 0.00 2.32
2699 2837 8.587111 GTTTCAAAAACAGACTTCACTCATTTC 58.413 33.333 0.00 0.00 0.00 2.17
2700 2838 6.795399 TCAAAAACAGACTTCACTCATTTCC 58.205 36.000 0.00 0.00 0.00 3.13
2701 2839 5.424121 AAAACAGACTTCACTCATTTCCG 57.576 39.130 0.00 0.00 0.00 4.30
2702 2840 4.336889 AACAGACTTCACTCATTTCCGA 57.663 40.909 0.00 0.00 0.00 4.55
2703 2841 3.919216 ACAGACTTCACTCATTTCCGAG 58.081 45.455 0.00 0.00 39.05 4.63
2704 2842 2.670414 CAGACTTCACTCATTTCCGAGC 59.330 50.000 0.00 0.00 36.42 5.03
2705 2843 2.300152 AGACTTCACTCATTTCCGAGCA 59.700 45.455 0.00 0.00 36.42 4.26
2706 2844 2.670414 GACTTCACTCATTTCCGAGCAG 59.330 50.000 0.00 0.00 36.42 4.24
2707 2845 2.037772 ACTTCACTCATTTCCGAGCAGT 59.962 45.455 0.00 0.00 36.42 4.40
2708 2846 2.084610 TCACTCATTTCCGAGCAGTG 57.915 50.000 0.00 0.00 36.42 3.66
2709 2847 1.618343 TCACTCATTTCCGAGCAGTGA 59.382 47.619 0.00 0.00 40.89 3.41
2710 2848 2.234661 TCACTCATTTCCGAGCAGTGAT 59.765 45.455 0.00 0.00 38.81 3.06
2711 2849 3.005554 CACTCATTTCCGAGCAGTGATT 58.994 45.455 0.00 0.00 37.28 2.57
2712 2850 3.438087 CACTCATTTCCGAGCAGTGATTT 59.562 43.478 0.00 0.00 37.28 2.17
2713 2851 3.686726 ACTCATTTCCGAGCAGTGATTTC 59.313 43.478 0.00 0.00 36.42 2.17
2714 2852 2.672874 TCATTTCCGAGCAGTGATTTCG 59.327 45.455 0.00 0.00 0.00 3.46
2716 2854 3.093278 CCGAGCAGTGATTTCGGC 58.907 61.111 15.20 0.00 46.10 5.54
2717 2855 2.464459 CCGAGCAGTGATTTCGGCC 61.464 63.158 15.20 0.00 46.10 6.13
2718 2856 1.448540 CGAGCAGTGATTTCGGCCT 60.449 57.895 0.00 0.00 0.00 5.19
2719 2857 0.179111 CGAGCAGTGATTTCGGCCTA 60.179 55.000 0.00 0.00 0.00 3.93
2720 2858 1.539065 CGAGCAGTGATTTCGGCCTAT 60.539 52.381 0.00 0.00 0.00 2.57
2721 2859 2.565841 GAGCAGTGATTTCGGCCTATT 58.434 47.619 0.00 0.00 0.00 1.73
2722 2860 2.545946 GAGCAGTGATTTCGGCCTATTC 59.454 50.000 0.00 0.00 0.00 1.75
2723 2861 2.092968 AGCAGTGATTTCGGCCTATTCA 60.093 45.455 0.00 0.00 0.00 2.57
2724 2862 2.880890 GCAGTGATTTCGGCCTATTCAT 59.119 45.455 0.00 0.00 0.00 2.57
2725 2863 4.065088 GCAGTGATTTCGGCCTATTCATA 58.935 43.478 0.00 0.00 0.00 2.15
2726 2864 4.515191 GCAGTGATTTCGGCCTATTCATAA 59.485 41.667 0.00 0.00 0.00 1.90
2727 2865 5.008613 GCAGTGATTTCGGCCTATTCATAAA 59.991 40.000 0.00 0.00 0.00 1.40
2728 2866 6.459573 GCAGTGATTTCGGCCTATTCATAAAA 60.460 38.462 0.00 0.00 0.00 1.52
2729 2867 7.479980 CAGTGATTTCGGCCTATTCATAAAAA 58.520 34.615 0.00 0.00 0.00 1.94
2730 2868 8.137437 CAGTGATTTCGGCCTATTCATAAAAAT 58.863 33.333 0.00 0.00 0.00 1.82
2731 2869 9.349713 AGTGATTTCGGCCTATTCATAAAAATA 57.650 29.630 0.00 0.00 0.00 1.40
2732 2870 9.959749 GTGATTTCGGCCTATTCATAAAAATAA 57.040 29.630 0.00 0.00 0.00 1.40
2738 2876 9.959749 TCGGCCTATTCATAAAAATAATTTCAC 57.040 29.630 0.00 0.00 0.00 3.18
2739 2877 9.965824 CGGCCTATTCATAAAAATAATTTCACT 57.034 29.630 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 9.683870 ACACCCCTATACGAACATTAAATTTAA 57.316 29.630 12.85 12.85 0.00 1.52
50 51 9.111613 CACACCCCTATACGAACATTAAATTTA 57.888 33.333 0.00 0.00 0.00 1.40
51 52 7.067737 CCACACCCCTATACGAACATTAAATTT 59.932 37.037 0.00 0.00 0.00 1.82
52 53 6.544564 CCACACCCCTATACGAACATTAAATT 59.455 38.462 0.00 0.00 0.00 1.82
53 54 6.059484 CCACACCCCTATACGAACATTAAAT 58.941 40.000 0.00 0.00 0.00 1.40
54 55 5.189342 TCCACACCCCTATACGAACATTAAA 59.811 40.000 0.00 0.00 0.00 1.52
55 56 4.715792 TCCACACCCCTATACGAACATTAA 59.284 41.667 0.00 0.00 0.00 1.40
56 57 4.288398 TCCACACCCCTATACGAACATTA 58.712 43.478 0.00 0.00 0.00 1.90
57 58 3.109151 TCCACACCCCTATACGAACATT 58.891 45.455 0.00 0.00 0.00 2.71
58 59 2.698797 CTCCACACCCCTATACGAACAT 59.301 50.000 0.00 0.00 0.00 2.71
59 60 2.104967 CTCCACACCCCTATACGAACA 58.895 52.381 0.00 0.00 0.00 3.18
60 61 1.202498 GCTCCACACCCCTATACGAAC 60.202 57.143 0.00 0.00 0.00 3.95
61 62 1.117150 GCTCCACACCCCTATACGAA 58.883 55.000 0.00 0.00 0.00 3.85
62 63 0.032912 TGCTCCACACCCCTATACGA 60.033 55.000 0.00 0.00 0.00 3.43
63 64 0.104304 GTGCTCCACACCCCTATACG 59.896 60.000 0.00 0.00 44.02 3.06
81 82 0.035439 CGGATTTGTAGCACCTGGGT 60.035 55.000 0.00 0.00 0.00 4.51
82 83 1.376609 GCGGATTTGTAGCACCTGGG 61.377 60.000 0.00 0.00 0.00 4.45
83 84 0.392998 AGCGGATTTGTAGCACCTGG 60.393 55.000 0.00 0.00 0.00 4.45
84 85 1.398390 GAAGCGGATTTGTAGCACCTG 59.602 52.381 0.00 0.00 0.00 4.00
85 86 1.679032 GGAAGCGGATTTGTAGCACCT 60.679 52.381 0.00 0.00 0.00 4.00
86 87 0.733150 GGAAGCGGATTTGTAGCACC 59.267 55.000 0.00 0.00 0.00 5.01
87 88 0.733150 GGGAAGCGGATTTGTAGCAC 59.267 55.000 0.00 0.00 0.00 4.40
88 89 0.326595 TGGGAAGCGGATTTGTAGCA 59.673 50.000 0.00 0.00 0.00 3.49
89 90 1.132453 GTTGGGAAGCGGATTTGTAGC 59.868 52.381 0.00 0.00 0.00 3.58
90 91 2.432444 TGTTGGGAAGCGGATTTGTAG 58.568 47.619 0.00 0.00 0.00 2.74
91 92 2.570415 TGTTGGGAAGCGGATTTGTA 57.430 45.000 0.00 0.00 0.00 2.41
92 93 1.923356 ATGTTGGGAAGCGGATTTGT 58.077 45.000 0.00 0.00 0.00 2.83
93 94 3.065371 GTCTATGTTGGGAAGCGGATTTG 59.935 47.826 0.00 0.00 0.00 2.32
94 95 3.279434 GTCTATGTTGGGAAGCGGATTT 58.721 45.455 0.00 0.00 0.00 2.17
95 96 2.238646 TGTCTATGTTGGGAAGCGGATT 59.761 45.455 0.00 0.00 0.00 3.01
96 97 1.837439 TGTCTATGTTGGGAAGCGGAT 59.163 47.619 0.00 0.00 0.00 4.18
97 98 1.066430 GTGTCTATGTTGGGAAGCGGA 60.066 52.381 0.00 0.00 0.00 5.54
98 99 1.338674 TGTGTCTATGTTGGGAAGCGG 60.339 52.381 0.00 0.00 0.00 5.52
99 100 1.732259 GTGTGTCTATGTTGGGAAGCG 59.268 52.381 0.00 0.00 0.00 4.68
100 101 3.059352 AGTGTGTCTATGTTGGGAAGC 57.941 47.619 0.00 0.00 0.00 3.86
101 102 4.223032 ACCTAGTGTGTCTATGTTGGGAAG 59.777 45.833 0.00 0.00 0.00 3.46
102 103 4.164981 ACCTAGTGTGTCTATGTTGGGAA 58.835 43.478 0.00 0.00 0.00 3.97
103 104 3.786553 ACCTAGTGTGTCTATGTTGGGA 58.213 45.455 0.00 0.00 0.00 4.37
104 105 4.253685 CAACCTAGTGTGTCTATGTTGGG 58.746 47.826 12.02 0.00 44.18 4.12
107 108 5.758296 CACAACAACCTAGTGTGTCTATGTT 59.242 40.000 2.97 0.00 37.75 2.71
128 129 0.260230 TCCCTCAAAAACAGCCCACA 59.740 50.000 0.00 0.00 0.00 4.17
136 137 0.313987 CACGGCCTTCCCTCAAAAAC 59.686 55.000 0.00 0.00 0.00 2.43
152 153 1.381928 TAGCCGAAGAGCCTACCACG 61.382 60.000 0.00 0.00 0.00 4.94
166 167 4.693566 TCCATTCTGTAAACAAGTTAGCCG 59.306 41.667 0.00 0.00 0.00 5.52
182 188 2.323999 TTGGGCCAAATGTCCATTCT 57.676 45.000 18.51 0.00 0.00 2.40
202 208 1.080638 AAAACTCCACCCTGGCCATA 58.919 50.000 5.51 0.00 37.47 2.74
208 214 1.463553 GGTGCCAAAACTCCACCCTG 61.464 60.000 0.00 0.00 42.44 4.45
256 262 8.859090 TGGTATCTCAACATTCAACAGATTTTT 58.141 29.630 0.00 0.00 0.00 1.94
257 263 8.408043 TGGTATCTCAACATTCAACAGATTTT 57.592 30.769 0.00 0.00 0.00 1.82
258 264 7.121759 CCTGGTATCTCAACATTCAACAGATTT 59.878 37.037 0.00 0.00 0.00 2.17
259 265 6.600822 CCTGGTATCTCAACATTCAACAGATT 59.399 38.462 0.00 0.00 0.00 2.40
260 266 6.070021 TCCTGGTATCTCAACATTCAACAGAT 60.070 38.462 0.00 0.00 0.00 2.90
261 267 5.248248 TCCTGGTATCTCAACATTCAACAGA 59.752 40.000 0.00 0.00 0.00 3.41
262 268 5.491070 TCCTGGTATCTCAACATTCAACAG 58.509 41.667 0.00 0.00 0.00 3.16
263 269 5.491070 CTCCTGGTATCTCAACATTCAACA 58.509 41.667 0.00 0.00 0.00 3.33
264 270 4.878397 CCTCCTGGTATCTCAACATTCAAC 59.122 45.833 0.00 0.00 0.00 3.18
265 271 4.626287 GCCTCCTGGTATCTCAACATTCAA 60.626 45.833 0.00 0.00 35.27 2.69
266 272 3.118261 GCCTCCTGGTATCTCAACATTCA 60.118 47.826 0.00 0.00 35.27 2.57
267 273 3.118261 TGCCTCCTGGTATCTCAACATTC 60.118 47.826 0.00 0.00 35.27 2.67
268 274 2.846206 TGCCTCCTGGTATCTCAACATT 59.154 45.455 0.00 0.00 35.27 2.71
269 275 2.437281 CTGCCTCCTGGTATCTCAACAT 59.563 50.000 0.00 0.00 35.27 2.71
270 276 1.833630 CTGCCTCCTGGTATCTCAACA 59.166 52.381 0.00 0.00 35.27 3.33
271 277 2.111384 TCTGCCTCCTGGTATCTCAAC 58.889 52.381 0.00 0.00 35.27 3.18
272 278 2.550277 TCTGCCTCCTGGTATCTCAA 57.450 50.000 0.00 0.00 35.27 3.02
273 279 2.178764 AGATCTGCCTCCTGGTATCTCA 59.821 50.000 0.00 0.00 35.27 3.27
274 280 2.562298 CAGATCTGCCTCCTGGTATCTC 59.438 54.545 10.38 0.00 31.66 2.75
275 281 2.178764 TCAGATCTGCCTCCTGGTATCT 59.821 50.000 18.36 0.00 33.11 1.98
303 309 6.245408 AGTCAATAAAAGCAACCCTATGTCA 58.755 36.000 0.00 0.00 0.00 3.58
308 314 5.249780 TGGAGTCAATAAAAGCAACCCTA 57.750 39.130 0.00 0.00 0.00 3.53
338 344 9.061435 TGTTCATTGTGTTGTATCAACTTGATA 57.939 29.630 7.31 7.31 38.26 2.15
346 352 5.220951 GGTGTGTGTTCATTGTGTTGTATCA 60.221 40.000 0.00 0.00 0.00 2.15
393 399 5.885230 ATGTGATTGTGTTGGATGTGTAG 57.115 39.130 0.00 0.00 0.00 2.74
394 400 5.767168 TGAATGTGATTGTGTTGGATGTGTA 59.233 36.000 0.00 0.00 0.00 2.90
400 406 3.950395 TGTGTGAATGTGATTGTGTTGGA 59.050 39.130 0.00 0.00 0.00 3.53
416 422 2.286477 CGGCGTGTTTATTTGTGTGTGA 60.286 45.455 0.00 0.00 0.00 3.58
534 542 6.402983 GCTTGCCTACATCAATATATCAGTGC 60.403 42.308 0.00 0.00 0.00 4.40
536 544 6.772605 TGCTTGCCTACATCAATATATCAGT 58.227 36.000 0.00 0.00 0.00 3.41
597 615 5.446473 GCTATGTTCTTTGTGATCTTGTCCG 60.446 44.000 0.00 0.00 0.00 4.79
646 676 1.024046 TCCGGATGGCGTCATTTGTG 61.024 55.000 2.92 0.00 32.98 3.33
647 677 0.744414 CTCCGGATGGCGTCATTTGT 60.744 55.000 3.57 0.00 32.98 2.83
774 813 5.500234 AGCAAGCAGGAATAAACATCAGTA 58.500 37.500 0.00 0.00 0.00 2.74
775 814 4.338879 AGCAAGCAGGAATAAACATCAGT 58.661 39.130 0.00 0.00 0.00 3.41
801 840 1.610624 CCCTAGCTTTCTTCGGTGCAA 60.611 52.381 0.00 0.00 0.00 4.08
802 841 0.036388 CCCTAGCTTTCTTCGGTGCA 60.036 55.000 0.00 0.00 0.00 4.57
812 851 2.623416 GTGTTTGCTTGTCCCTAGCTTT 59.377 45.455 0.00 0.00 39.38 3.51
833 876 0.685097 TCTCCTCCCTTCGGTGTTTG 59.315 55.000 0.00 0.00 0.00 2.93
883 926 2.025981 TGTAGGGTGAGAATGCTGCATT 60.026 45.455 26.54 26.54 36.72 3.56
896 939 2.231478 CTGGAGGCGTATATGTAGGGTG 59.769 54.545 0.00 0.00 0.00 4.61
913 956 1.005394 GTTTTCTCGGCCGACTGGA 60.005 57.895 27.28 18.29 37.49 3.86
921 964 1.370051 GCGTTGGTGTTTTCTCGGC 60.370 57.895 0.00 0.00 0.00 5.54
1007 1051 1.202580 AGCAGTTGAGAAGCTTCACGT 60.203 47.619 27.57 7.87 34.37 4.49
1035 1079 1.070105 CACCCTGTTTCCGAACGGA 59.930 57.895 12.04 12.04 43.47 4.69
1080 1124 2.708255 GCCGTCTCCTCGTACTCG 59.292 66.667 0.00 0.00 38.55 4.18
1316 1366 3.686241 TGCAGCTGAATCAGTGAATGTAC 59.314 43.478 20.43 0.00 33.43 2.90
1322 1372 2.166254 TCGTATGCAGCTGAATCAGTGA 59.834 45.455 20.43 5.95 33.43 3.41
1338 1388 4.555708 CGAGTTATGAGAGCAGCTTCGTAT 60.556 45.833 0.00 0.00 0.00 3.06
1354 1404 6.472486 CACACGAGTCATGATTTACGAGTTAT 59.528 38.462 16.17 0.00 0.00 1.89
1439 1489 1.617947 CCTTCTTCCCCTCCTCCACG 61.618 65.000 0.00 0.00 0.00 4.94
1647 1697 2.893398 GCACTCGTTCTCCCCGAT 59.107 61.111 0.00 0.00 33.27 4.18
1694 1744 1.070105 GCCCACGAACTGGTACACA 59.930 57.895 0.00 0.00 38.60 3.72
1743 1793 2.398554 GCTGGCGGATCGAGCAAAA 61.399 57.895 1.84 0.00 44.69 2.44
1772 1822 5.580297 GCTAGCTTATTCTGCTCATCATACC 59.420 44.000 7.70 0.00 41.46 2.73
1783 1833 1.541233 CCACCCGGCTAGCTTATTCTG 60.541 57.143 15.72 3.00 0.00 3.02
1833 1899 4.409218 ATTGCACTTGCGCGCAGG 62.409 61.111 37.34 37.34 45.83 4.85
1837 1903 2.866510 CACGATTGCACTTGCGCG 60.867 61.111 0.00 0.00 45.83 6.86
1918 2033 0.184933 AGCCAGCAGTACCCAAACAA 59.815 50.000 0.00 0.00 0.00 2.83
1919 2034 0.250727 GAGCCAGCAGTACCCAAACA 60.251 55.000 0.00 0.00 0.00 2.83
1920 2035 0.960861 GGAGCCAGCAGTACCCAAAC 60.961 60.000 0.00 0.00 0.00 2.93
1921 2036 1.378762 GGAGCCAGCAGTACCCAAA 59.621 57.895 0.00 0.00 0.00 3.28
1951 2066 2.437716 AAATCAATCGCCGGCCGT 60.438 55.556 26.12 6.63 38.35 5.68
1963 2078 6.268825 ACGCTACTGAGAAACTAGAAATCA 57.731 37.500 0.00 0.00 0.00 2.57
2040 2163 1.202592 ACAACATGTGTCGTGCCTGTA 60.203 47.619 0.00 0.00 34.38 2.74
2067 2196 3.625853 TGGAACGATTGGATGGCAATAA 58.374 40.909 0.00 0.00 0.00 1.40
2069 2198 2.026641 CTGGAACGATTGGATGGCAAT 58.973 47.619 0.00 0.00 0.00 3.56
2098 2235 1.066303 TGATTTCGCCGCAAACAAACT 59.934 42.857 0.00 0.00 0.00 2.66
2145 2282 1.750206 TCCACCGATTGATGGCATTTG 59.250 47.619 0.00 0.00 35.81 2.32
2148 2285 0.255604 TGTCCACCGATTGATGGCAT 59.744 50.000 0.00 0.00 35.81 4.40
2231 2369 3.119137 GCCAAAAGGCATAACCGAAGAAT 60.119 43.478 0.84 0.00 46.52 2.40
2232 2370 2.230266 GCCAAAAGGCATAACCGAAGAA 59.770 45.455 0.84 0.00 46.52 2.52
2233 2371 1.816224 GCCAAAAGGCATAACCGAAGA 59.184 47.619 0.84 0.00 46.52 2.87
2236 2374 3.348151 TGCCAAAAGGCATAACCGA 57.652 47.368 4.86 0.00 46.52 4.69
2249 2387 9.482627 AACTTAAAATTTCAAATACGATGCCAA 57.517 25.926 0.00 0.00 0.00 4.52
2268 2406 5.870978 CGGAGGGAGTAATTCGAAACTTAAA 59.129 40.000 0.00 0.00 0.00 1.52
2271 2409 3.260128 ACGGAGGGAGTAATTCGAAACTT 59.740 43.478 0.00 0.00 0.00 2.66
2272 2410 2.830321 ACGGAGGGAGTAATTCGAAACT 59.170 45.455 0.00 1.22 0.00 2.66
2273 2411 3.185330 GACGGAGGGAGTAATTCGAAAC 58.815 50.000 0.00 0.00 0.00 2.78
2274 2412 2.167075 GGACGGAGGGAGTAATTCGAAA 59.833 50.000 0.00 0.00 0.00 3.46
2275 2413 1.753073 GGACGGAGGGAGTAATTCGAA 59.247 52.381 0.00 0.00 0.00 3.71
2276 2414 1.396653 GGACGGAGGGAGTAATTCGA 58.603 55.000 0.00 0.00 0.00 3.71
2277 2415 0.388294 GGGACGGAGGGAGTAATTCG 59.612 60.000 0.00 0.00 0.00 3.34
2278 2416 1.492764 TGGGACGGAGGGAGTAATTC 58.507 55.000 0.00 0.00 0.00 2.17
2279 2417 2.191981 ATGGGACGGAGGGAGTAATT 57.808 50.000 0.00 0.00 0.00 1.40
2280 2418 3.339713 TTATGGGACGGAGGGAGTAAT 57.660 47.619 0.00 0.00 0.00 1.89
2281 2419 2.852714 TTATGGGACGGAGGGAGTAA 57.147 50.000 0.00 0.00 0.00 2.24
2282 2420 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
2283 2421 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2284 2422 6.368779 TTTTATATTATGGGACGGAGGGAG 57.631 41.667 0.00 0.00 0.00 4.30
2285 2423 5.280317 GCTTTTATATTATGGGACGGAGGGA 60.280 44.000 0.00 0.00 0.00 4.20
2286 2424 4.941873 GCTTTTATATTATGGGACGGAGGG 59.058 45.833 0.00 0.00 0.00 4.30
2287 2425 4.630069 CGCTTTTATATTATGGGACGGAGG 59.370 45.833 0.00 0.00 0.00 4.30
2288 2426 5.235516 ACGCTTTTATATTATGGGACGGAG 58.764 41.667 0.00 0.00 0.00 4.63
2289 2427 5.217978 ACGCTTTTATATTATGGGACGGA 57.782 39.130 0.00 0.00 0.00 4.69
2290 2428 5.934935 AACGCTTTTATATTATGGGACGG 57.065 39.130 0.00 0.00 0.00 4.79
2291 2429 7.911205 TCAAAAACGCTTTTATATTATGGGACG 59.089 33.333 0.00 0.00 32.85 4.79
2292 2430 9.575783 TTCAAAAACGCTTTTATATTATGGGAC 57.424 29.630 0.00 0.00 32.85 4.46
2293 2431 9.796120 CTTCAAAAACGCTTTTATATTATGGGA 57.204 29.630 0.00 0.00 32.85 4.37
2294 2432 9.030301 CCTTCAAAAACGCTTTTATATTATGGG 57.970 33.333 0.00 0.00 32.85 4.00
2295 2433 9.796120 TCCTTCAAAAACGCTTTTATATTATGG 57.204 29.630 0.00 0.00 32.85 2.74
2299 2437 9.705290 ATTGTCCTTCAAAAACGCTTTTATATT 57.295 25.926 0.00 0.00 39.62 1.28
2300 2438 9.139174 CATTGTCCTTCAAAAACGCTTTTATAT 57.861 29.630 0.00 0.00 39.62 0.86
2301 2439 8.353684 TCATTGTCCTTCAAAAACGCTTTTATA 58.646 29.630 0.00 0.00 39.62 0.98
2302 2440 7.206687 TCATTGTCCTTCAAAAACGCTTTTAT 58.793 30.769 0.00 0.00 39.62 1.40
2303 2441 6.565234 TCATTGTCCTTCAAAAACGCTTTTA 58.435 32.000 0.00 0.00 39.62 1.52
2304 2442 5.415221 TCATTGTCCTTCAAAAACGCTTTT 58.585 33.333 0.00 0.00 39.62 2.27
2305 2443 5.004922 TCATTGTCCTTCAAAAACGCTTT 57.995 34.783 0.00 0.00 39.62 3.51
2306 2444 4.647424 TCATTGTCCTTCAAAAACGCTT 57.353 36.364 0.00 0.00 39.62 4.68
2307 2445 4.853924 ATCATTGTCCTTCAAAAACGCT 57.146 36.364 0.00 0.00 39.62 5.07
2308 2446 6.089417 CCTTAATCATTGTCCTTCAAAAACGC 59.911 38.462 0.00 0.00 39.62 4.84
2309 2447 7.145323 ACCTTAATCATTGTCCTTCAAAAACG 58.855 34.615 0.00 0.00 39.62 3.60
2312 2450 9.753674 AGATACCTTAATCATTGTCCTTCAAAA 57.246 29.630 0.00 0.00 39.62 2.44
2318 2456 8.317679 GCAGATAGATACCTTAATCATTGTCCT 58.682 37.037 0.00 0.00 0.00 3.85
2319 2457 8.317679 AGCAGATAGATACCTTAATCATTGTCC 58.682 37.037 0.00 0.00 0.00 4.02
2320 2458 9.364989 GAGCAGATAGATACCTTAATCATTGTC 57.635 37.037 0.00 0.00 0.00 3.18
2321 2459 8.031864 CGAGCAGATAGATACCTTAATCATTGT 58.968 37.037 0.00 0.00 0.00 2.71
2322 2460 8.246871 TCGAGCAGATAGATACCTTAATCATTG 58.753 37.037 0.00 0.00 0.00 2.82
2323 2461 8.354711 TCGAGCAGATAGATACCTTAATCATT 57.645 34.615 0.00 0.00 0.00 2.57
2324 2462 7.416213 GCTCGAGCAGATAGATACCTTAATCAT 60.416 40.741 31.91 0.00 41.59 2.45
2325 2463 6.127869 GCTCGAGCAGATAGATACCTTAATCA 60.128 42.308 31.91 0.00 41.59 2.57
2326 2464 6.262601 GCTCGAGCAGATAGATACCTTAATC 58.737 44.000 31.91 0.00 41.59 1.75
2327 2465 5.163703 CGCTCGAGCAGATAGATACCTTAAT 60.164 44.000 34.69 0.00 42.21 1.40
2328 2466 4.154375 CGCTCGAGCAGATAGATACCTTAA 59.846 45.833 34.69 0.00 42.21 1.85
2329 2467 3.685272 CGCTCGAGCAGATAGATACCTTA 59.315 47.826 34.69 0.00 42.21 2.69
2330 2468 2.486203 CGCTCGAGCAGATAGATACCTT 59.514 50.000 34.69 0.00 42.21 3.50
2331 2469 2.080693 CGCTCGAGCAGATAGATACCT 58.919 52.381 34.69 0.00 42.21 3.08
2332 2470 1.807742 ACGCTCGAGCAGATAGATACC 59.192 52.381 34.69 3.26 42.21 2.73
2333 2471 4.330347 TCATACGCTCGAGCAGATAGATAC 59.670 45.833 34.69 3.79 42.21 2.24
2334 2472 4.504858 TCATACGCTCGAGCAGATAGATA 58.495 43.478 34.69 15.89 42.21 1.98
2335 2473 3.339141 TCATACGCTCGAGCAGATAGAT 58.661 45.455 34.69 15.76 42.21 1.98
2336 2474 2.739379 CTCATACGCTCGAGCAGATAGA 59.261 50.000 34.69 22.88 42.21 1.98
2337 2475 3.116063 CTCATACGCTCGAGCAGATAG 57.884 52.381 34.69 21.14 42.21 2.08
2344 2482 1.659954 GCCAGCTCATACGCTCGAG 60.660 63.158 8.45 8.45 38.41 4.04
2345 2483 0.818040 TAGCCAGCTCATACGCTCGA 60.818 55.000 0.00 0.00 38.41 4.04
2346 2484 0.030773 TTAGCCAGCTCATACGCTCG 59.969 55.000 0.00 0.00 38.41 5.03
2347 2485 2.131183 CTTTAGCCAGCTCATACGCTC 58.869 52.381 0.00 0.00 38.41 5.03
2348 2486 1.482593 ACTTTAGCCAGCTCATACGCT 59.517 47.619 0.00 0.00 41.90 5.07
2349 2487 1.861575 GACTTTAGCCAGCTCATACGC 59.138 52.381 0.00 0.00 0.00 4.42
2350 2488 3.165058 TGACTTTAGCCAGCTCATACG 57.835 47.619 0.00 0.00 0.00 3.06
2351 2489 4.253685 TGTTGACTTTAGCCAGCTCATAC 58.746 43.478 0.00 0.00 0.00 2.39
2352 2490 4.551702 TGTTGACTTTAGCCAGCTCATA 57.448 40.909 0.00 0.00 0.00 2.15
2353 2491 3.423539 TGTTGACTTTAGCCAGCTCAT 57.576 42.857 0.00 0.00 0.00 2.90
2354 2492 2.928801 TGTTGACTTTAGCCAGCTCA 57.071 45.000 0.00 0.00 0.00 4.26
2355 2493 3.403038 TCTTGTTGACTTTAGCCAGCTC 58.597 45.455 0.00 0.00 0.00 4.09
2356 2494 3.492102 TCTTGTTGACTTTAGCCAGCT 57.508 42.857 0.00 0.00 0.00 4.24
2357 2495 4.275936 TCTTTCTTGTTGACTTTAGCCAGC 59.724 41.667 0.00 0.00 0.00 4.85
2358 2496 6.376978 CATCTTTCTTGTTGACTTTAGCCAG 58.623 40.000 0.00 0.00 0.00 4.85
2359 2497 5.278463 GCATCTTTCTTGTTGACTTTAGCCA 60.278 40.000 0.00 0.00 0.00 4.75
2360 2498 5.157067 GCATCTTTCTTGTTGACTTTAGCC 58.843 41.667 0.00 0.00 0.00 3.93
2361 2499 4.848299 CGCATCTTTCTTGTTGACTTTAGC 59.152 41.667 0.00 0.00 0.00 3.09
2362 2500 5.848036 CACGCATCTTTCTTGTTGACTTTAG 59.152 40.000 0.00 0.00 0.00 1.85
2363 2501 5.295787 ACACGCATCTTTCTTGTTGACTTTA 59.704 36.000 0.00 0.00 0.00 1.85
2364 2502 4.096382 ACACGCATCTTTCTTGTTGACTTT 59.904 37.500 0.00 0.00 0.00 2.66
2365 2503 3.627577 ACACGCATCTTTCTTGTTGACTT 59.372 39.130 0.00 0.00 0.00 3.01
2366 2504 3.206150 ACACGCATCTTTCTTGTTGACT 58.794 40.909 0.00 0.00 0.00 3.41
2367 2505 3.609103 ACACGCATCTTTCTTGTTGAC 57.391 42.857 0.00 0.00 0.00 3.18
2368 2506 3.745975 CCTACACGCATCTTTCTTGTTGA 59.254 43.478 0.00 0.00 0.00 3.18
2369 2507 3.667960 GCCTACACGCATCTTTCTTGTTG 60.668 47.826 0.00 0.00 0.00 3.33
2370 2508 2.484264 GCCTACACGCATCTTTCTTGTT 59.516 45.455 0.00 0.00 0.00 2.83
2371 2509 2.076863 GCCTACACGCATCTTTCTTGT 58.923 47.619 0.00 0.00 0.00 3.16
2372 2510 1.061131 CGCCTACACGCATCTTTCTTG 59.939 52.381 0.00 0.00 0.00 3.02
2373 2511 1.359848 CGCCTACACGCATCTTTCTT 58.640 50.000 0.00 0.00 0.00 2.52
2374 2512 3.050703 CGCCTACACGCATCTTTCT 57.949 52.632 0.00 0.00 0.00 2.52
2397 2535 2.431942 AAGCCGCGTTACACCTCG 60.432 61.111 4.92 0.00 0.00 4.63
2398 2536 0.388907 TACAAGCCGCGTTACACCTC 60.389 55.000 4.92 0.00 0.00 3.85
2399 2537 0.248289 ATACAAGCCGCGTTACACCT 59.752 50.000 4.92 0.00 0.00 4.00
2400 2538 1.856597 CTATACAAGCCGCGTTACACC 59.143 52.381 4.92 0.00 0.00 4.16
2401 2539 1.856597 CCTATACAAGCCGCGTTACAC 59.143 52.381 4.92 0.00 0.00 2.90
2402 2540 1.803625 GCCTATACAAGCCGCGTTACA 60.804 52.381 4.92 0.00 0.00 2.41
2403 2541 0.857287 GCCTATACAAGCCGCGTTAC 59.143 55.000 4.92 0.00 0.00 2.50
2404 2542 0.249573 GGCCTATACAAGCCGCGTTA 60.250 55.000 4.92 0.00 39.87 3.18
2405 2543 1.523032 GGCCTATACAAGCCGCGTT 60.523 57.895 4.92 0.00 39.87 4.84
2406 2544 2.108362 GGCCTATACAAGCCGCGT 59.892 61.111 4.92 0.00 39.87 6.01
2410 2548 2.614829 TTTCTCGGCCTATACAAGCC 57.385 50.000 0.00 0.00 46.17 4.35
2411 2549 3.251004 CCATTTTCTCGGCCTATACAAGC 59.749 47.826 0.00 0.00 0.00 4.01
2412 2550 4.451900 ACCATTTTCTCGGCCTATACAAG 58.548 43.478 0.00 0.00 0.00 3.16
2413 2551 4.497291 ACCATTTTCTCGGCCTATACAA 57.503 40.909 0.00 0.00 0.00 2.41
2414 2552 4.497291 AACCATTTTCTCGGCCTATACA 57.503 40.909 0.00 0.00 0.00 2.29
2415 2553 5.830000 AAAACCATTTTCTCGGCCTATAC 57.170 39.130 0.00 0.00 0.00 1.47
2416 2554 9.802039 ATATAAAAACCATTTTCTCGGCCTATA 57.198 29.630 0.00 0.00 39.42 1.31
2417 2555 8.706322 ATATAAAAACCATTTTCTCGGCCTAT 57.294 30.769 0.00 0.00 39.42 2.57
2418 2556 7.229907 GGATATAAAAACCATTTTCTCGGCCTA 59.770 37.037 0.00 0.00 39.42 3.93
2419 2557 6.040504 GGATATAAAAACCATTTTCTCGGCCT 59.959 38.462 0.00 0.00 39.42 5.19
2420 2558 6.213677 GGATATAAAAACCATTTTCTCGGCC 58.786 40.000 0.00 0.00 39.42 6.13
2421 2559 5.912955 CGGATATAAAAACCATTTTCTCGGC 59.087 40.000 0.00 0.00 39.42 5.54
2422 2560 5.912955 GCGGATATAAAAACCATTTTCTCGG 59.087 40.000 0.00 0.00 39.42 4.63
2423 2561 6.491394 TGCGGATATAAAAACCATTTTCTCG 58.509 36.000 0.00 0.00 39.42 4.04
2424 2562 7.973944 ACTTGCGGATATAAAAACCATTTTCTC 59.026 33.333 0.00 0.00 39.42 2.87
2425 2563 7.836842 ACTTGCGGATATAAAAACCATTTTCT 58.163 30.769 0.00 0.00 39.42 2.52
2426 2564 8.474006 AACTTGCGGATATAAAAACCATTTTC 57.526 30.769 0.00 0.00 39.42 2.29
2427 2565 8.840833 AAACTTGCGGATATAAAAACCATTTT 57.159 26.923 0.00 0.00 41.50 1.82
2428 2566 8.840833 AAAACTTGCGGATATAAAAACCATTT 57.159 26.923 0.00 0.00 0.00 2.32
2429 2567 8.840833 AAAAACTTGCGGATATAAAAACCATT 57.159 26.923 0.00 0.00 0.00 3.16
2454 2592 5.293814 TGATTCTTCACCGTTACACGAAAAA 59.706 36.000 0.00 0.00 46.05 1.94
2455 2593 4.809958 TGATTCTTCACCGTTACACGAAAA 59.190 37.500 0.00 0.00 46.05 2.29
2456 2594 4.370049 TGATTCTTCACCGTTACACGAAA 58.630 39.130 0.00 0.00 46.05 3.46
2457 2595 3.979948 TGATTCTTCACCGTTACACGAA 58.020 40.909 0.00 0.00 46.05 3.85
2458 2596 3.646611 TGATTCTTCACCGTTACACGA 57.353 42.857 0.00 0.00 46.05 4.35
2459 2597 4.921470 ATTGATTCTTCACCGTTACACG 57.079 40.909 0.00 0.00 42.11 4.49
2460 2598 5.390613 CCAATTGATTCTTCACCGTTACAC 58.609 41.667 7.12 0.00 0.00 2.90
2461 2599 4.083003 GCCAATTGATTCTTCACCGTTACA 60.083 41.667 7.12 0.00 0.00 2.41
2462 2600 4.083003 TGCCAATTGATTCTTCACCGTTAC 60.083 41.667 7.12 0.00 0.00 2.50
2463 2601 4.075682 TGCCAATTGATTCTTCACCGTTA 58.924 39.130 7.12 0.00 0.00 3.18
2464 2602 2.890311 TGCCAATTGATTCTTCACCGTT 59.110 40.909 7.12 0.00 0.00 4.44
2465 2603 2.513753 TGCCAATTGATTCTTCACCGT 58.486 42.857 7.12 0.00 0.00 4.83
2466 2604 3.574284 TTGCCAATTGATTCTTCACCG 57.426 42.857 7.12 0.00 0.00 4.94
2467 2605 5.481105 TCATTTGCCAATTGATTCTTCACC 58.519 37.500 7.12 0.00 0.00 4.02
2468 2606 7.605410 AATCATTTGCCAATTGATTCTTCAC 57.395 32.000 17.48 0.00 0.00 3.18
2469 2607 8.624367 AAAATCATTTGCCAATTGATTCTTCA 57.376 26.923 21.37 0.00 0.00 3.02
2470 2608 9.337091 CAAAAATCATTTGCCAATTGATTCTTC 57.663 29.630 21.37 0.00 0.00 2.87
2471 2609 8.852135 ACAAAAATCATTTGCCAATTGATTCTT 58.148 25.926 21.37 14.59 32.93 2.52
2472 2610 8.398878 ACAAAAATCATTTGCCAATTGATTCT 57.601 26.923 21.37 10.35 32.93 2.40
2473 2611 8.907685 CAACAAAAATCATTTGCCAATTGATTC 58.092 29.630 21.37 0.00 32.93 2.52
2474 2612 7.382759 GCAACAAAAATCATTTGCCAATTGATT 59.617 29.630 17.48 17.48 38.74 2.57
2475 2613 6.864165 GCAACAAAAATCATTTGCCAATTGAT 59.136 30.769 7.12 8.60 38.74 2.57
2476 2614 6.207213 GCAACAAAAATCATTTGCCAATTGA 58.793 32.000 7.12 4.64 38.74 2.57
2477 2615 5.115773 CGCAACAAAAATCATTTGCCAATTG 59.884 36.000 0.00 0.00 41.08 2.32
2478 2616 5.213675 CGCAACAAAAATCATTTGCCAATT 58.786 33.333 1.08 0.00 41.08 2.32
2479 2617 4.785417 CGCAACAAAAATCATTTGCCAAT 58.215 34.783 1.08 0.00 41.08 3.16
2480 2618 3.547613 GCGCAACAAAAATCATTTGCCAA 60.548 39.130 0.30 0.00 41.08 4.52
2481 2619 2.032204 GCGCAACAAAAATCATTTGCCA 60.032 40.909 0.30 0.00 41.08 4.92
2482 2620 2.032204 TGCGCAACAAAAATCATTTGCC 60.032 40.909 8.16 0.00 41.08 4.52
2483 2621 3.250464 TGCGCAACAAAAATCATTTGC 57.750 38.095 8.16 0.00 40.80 3.68
2484 2622 6.361114 TGTATTGCGCAACAAAAATCATTTG 58.639 32.000 27.64 0.00 42.86 2.32
2485 2623 6.423302 TCTGTATTGCGCAACAAAAATCATTT 59.577 30.769 27.64 7.38 42.86 2.32
2486 2624 5.925397 TCTGTATTGCGCAACAAAAATCATT 59.075 32.000 27.64 7.96 42.86 2.57
2487 2625 5.468592 TCTGTATTGCGCAACAAAAATCAT 58.531 33.333 27.64 8.78 42.86 2.45
2488 2626 4.864633 TCTGTATTGCGCAACAAAAATCA 58.135 34.783 27.64 14.59 42.86 2.57
2489 2627 5.153513 TCTCTGTATTGCGCAACAAAAATC 58.846 37.500 27.64 10.91 42.86 2.17
2490 2628 5.119931 TCTCTGTATTGCGCAACAAAAAT 57.880 34.783 27.64 11.25 42.86 1.82
2491 2629 4.036262 ACTCTCTGTATTGCGCAACAAAAA 59.964 37.500 27.64 10.47 42.86 1.94
2492 2630 3.563808 ACTCTCTGTATTGCGCAACAAAA 59.436 39.130 27.64 11.06 42.86 2.44
2493 2631 3.058983 CACTCTCTGTATTGCGCAACAAA 60.059 43.478 27.64 8.40 42.86 2.83
2494 2632 2.480037 CACTCTCTGTATTGCGCAACAA 59.520 45.455 27.64 14.33 44.01 2.83
2495 2633 2.068519 CACTCTCTGTATTGCGCAACA 58.931 47.619 27.64 19.91 0.00 3.33
2496 2634 1.394917 CCACTCTCTGTATTGCGCAAC 59.605 52.381 27.64 15.77 0.00 4.17
2497 2635 1.275010 TCCACTCTCTGTATTGCGCAA 59.725 47.619 27.24 27.24 0.00 4.85
2498 2636 0.894835 TCCACTCTCTGTATTGCGCA 59.105 50.000 5.66 5.66 0.00 6.09
2499 2637 1.135139 TCTCCACTCTCTGTATTGCGC 59.865 52.381 0.00 0.00 0.00 6.09
2500 2638 3.067320 TCATCTCCACTCTCTGTATTGCG 59.933 47.826 0.00 0.00 0.00 4.85
2501 2639 4.662468 TCATCTCCACTCTCTGTATTGC 57.338 45.455 0.00 0.00 0.00 3.56
2502 2640 6.018098 GCATTTCATCTCCACTCTCTGTATTG 60.018 42.308 0.00 0.00 0.00 1.90
2503 2641 6.054295 GCATTTCATCTCCACTCTCTGTATT 58.946 40.000 0.00 0.00 0.00 1.89
2504 2642 5.129980 TGCATTTCATCTCCACTCTCTGTAT 59.870 40.000 0.00 0.00 0.00 2.29
2505 2643 4.467438 TGCATTTCATCTCCACTCTCTGTA 59.533 41.667 0.00 0.00 0.00 2.74
2506 2644 3.262660 TGCATTTCATCTCCACTCTCTGT 59.737 43.478 0.00 0.00 0.00 3.41
2507 2645 3.870274 TGCATTTCATCTCCACTCTCTG 58.130 45.455 0.00 0.00 0.00 3.35
2508 2646 4.260170 GTTGCATTTCATCTCCACTCTCT 58.740 43.478 0.00 0.00 0.00 3.10
2509 2647 3.376546 GGTTGCATTTCATCTCCACTCTC 59.623 47.826 0.00 0.00 0.00 3.20
2510 2648 3.350833 GGTTGCATTTCATCTCCACTCT 58.649 45.455 0.00 0.00 0.00 3.24
2511 2649 2.096496 CGGTTGCATTTCATCTCCACTC 59.904 50.000 0.00 0.00 0.00 3.51
2512 2650 2.086869 CGGTTGCATTTCATCTCCACT 58.913 47.619 0.00 0.00 0.00 4.00
2513 2651 1.812571 ACGGTTGCATTTCATCTCCAC 59.187 47.619 0.00 0.00 0.00 4.02
2514 2652 2.198827 ACGGTTGCATTTCATCTCCA 57.801 45.000 0.00 0.00 0.00 3.86
2515 2653 2.867429 CAACGGTTGCATTTCATCTCC 58.133 47.619 8.09 0.00 0.00 3.71
2527 2665 0.667993 AACCTGACATGCAACGGTTG 59.332 50.000 16.35 16.35 36.66 3.77
2528 2666 1.066908 CAAACCTGACATGCAACGGTT 59.933 47.619 0.00 0.67 39.50 4.44
2529 2667 0.667993 CAAACCTGACATGCAACGGT 59.332 50.000 0.00 0.00 0.00 4.83
2530 2668 0.667993 ACAAACCTGACATGCAACGG 59.332 50.000 0.00 0.00 0.00 4.44
2531 2669 3.188254 TGATACAAACCTGACATGCAACG 59.812 43.478 0.00 0.00 0.00 4.10
2532 2670 4.726416 CTGATACAAACCTGACATGCAAC 58.274 43.478 0.00 0.00 0.00 4.17
2533 2671 3.191162 GCTGATACAAACCTGACATGCAA 59.809 43.478 0.00 0.00 0.00 4.08
2534 2672 2.749076 GCTGATACAAACCTGACATGCA 59.251 45.455 0.00 0.00 0.00 3.96
2535 2673 3.012518 AGCTGATACAAACCTGACATGC 58.987 45.455 0.00 0.00 0.00 4.06
2536 2674 4.511527 AGAGCTGATACAAACCTGACATG 58.488 43.478 0.00 0.00 0.00 3.21
2537 2675 4.833478 AGAGCTGATACAAACCTGACAT 57.167 40.909 0.00 0.00 0.00 3.06
2538 2676 4.623932 AAGAGCTGATACAAACCTGACA 57.376 40.909 0.00 0.00 0.00 3.58
2539 2677 5.725362 ACTAAGAGCTGATACAAACCTGAC 58.275 41.667 0.00 0.00 0.00 3.51
2540 2678 6.360370 AACTAAGAGCTGATACAAACCTGA 57.640 37.500 0.00 0.00 0.00 3.86
2541 2679 7.981789 TCATAACTAAGAGCTGATACAAACCTG 59.018 37.037 0.00 0.00 0.00 4.00
2542 2680 8.079211 TCATAACTAAGAGCTGATACAAACCT 57.921 34.615 0.00 0.00 0.00 3.50
2543 2681 8.198109 TCTCATAACTAAGAGCTGATACAAACC 58.802 37.037 0.00 0.00 0.00 3.27
2544 2682 9.757227 ATCTCATAACTAAGAGCTGATACAAAC 57.243 33.333 0.00 0.00 0.00 2.93
2550 2688 9.013229 CACTCTATCTCATAACTAAGAGCTGAT 57.987 37.037 0.00 0.00 35.05 2.90
2551 2689 7.446931 CCACTCTATCTCATAACTAAGAGCTGA 59.553 40.741 0.00 0.00 35.05 4.26
2552 2690 7.230510 ACCACTCTATCTCATAACTAAGAGCTG 59.769 40.741 0.00 0.00 35.05 4.24
2553 2691 7.294584 ACCACTCTATCTCATAACTAAGAGCT 58.705 38.462 0.00 0.00 35.05 4.09
2554 2692 7.519032 ACCACTCTATCTCATAACTAAGAGC 57.481 40.000 0.00 0.00 35.05 4.09
2555 2693 7.658167 TCGACCACTCTATCTCATAACTAAGAG 59.342 40.741 0.00 0.00 37.17 2.85
2556 2694 7.506971 TCGACCACTCTATCTCATAACTAAGA 58.493 38.462 0.00 0.00 0.00 2.10
2557 2695 7.442969 ACTCGACCACTCTATCTCATAACTAAG 59.557 40.741 0.00 0.00 0.00 2.18
2558 2696 7.226918 CACTCGACCACTCTATCTCATAACTAA 59.773 40.741 0.00 0.00 0.00 2.24
2559 2697 6.706716 CACTCGACCACTCTATCTCATAACTA 59.293 42.308 0.00 0.00 0.00 2.24
2560 2698 5.529430 CACTCGACCACTCTATCTCATAACT 59.471 44.000 0.00 0.00 0.00 2.24
2561 2699 5.278071 CCACTCGACCACTCTATCTCATAAC 60.278 48.000 0.00 0.00 0.00 1.89
2562 2700 4.822350 CCACTCGACCACTCTATCTCATAA 59.178 45.833 0.00 0.00 0.00 1.90
2563 2701 4.102681 TCCACTCGACCACTCTATCTCATA 59.897 45.833 0.00 0.00 0.00 2.15
2564 2702 3.117851 TCCACTCGACCACTCTATCTCAT 60.118 47.826 0.00 0.00 0.00 2.90
2565 2703 2.238898 TCCACTCGACCACTCTATCTCA 59.761 50.000 0.00 0.00 0.00 3.27
2566 2704 2.875933 CTCCACTCGACCACTCTATCTC 59.124 54.545 0.00 0.00 0.00 2.75
2567 2705 2.506231 TCTCCACTCGACCACTCTATCT 59.494 50.000 0.00 0.00 0.00 1.98
2568 2706 2.920524 TCTCCACTCGACCACTCTATC 58.079 52.381 0.00 0.00 0.00 2.08
2569 2707 3.367646 TTCTCCACTCGACCACTCTAT 57.632 47.619 0.00 0.00 0.00 1.98
2570 2708 2.873094 TTCTCCACTCGACCACTCTA 57.127 50.000 0.00 0.00 0.00 2.43
2571 2709 1.996798 TTTCTCCACTCGACCACTCT 58.003 50.000 0.00 0.00 0.00 3.24
2572 2710 2.296471 TCTTTTCTCCACTCGACCACTC 59.704 50.000 0.00 0.00 0.00 3.51
2573 2711 2.036089 GTCTTTTCTCCACTCGACCACT 59.964 50.000 0.00 0.00 0.00 4.00
2574 2712 2.405172 GTCTTTTCTCCACTCGACCAC 58.595 52.381 0.00 0.00 0.00 4.16
2575 2713 1.000607 CGTCTTTTCTCCACTCGACCA 60.001 52.381 0.00 0.00 0.00 4.02
2576 2714 1.669211 CCGTCTTTTCTCCACTCGACC 60.669 57.143 0.00 0.00 0.00 4.79
2577 2715 1.699343 CCGTCTTTTCTCCACTCGAC 58.301 55.000 0.00 0.00 0.00 4.20
2578 2716 0.038526 GCCGTCTTTTCTCCACTCGA 60.039 55.000 0.00 0.00 0.00 4.04
2579 2717 1.014564 GGCCGTCTTTTCTCCACTCG 61.015 60.000 0.00 0.00 0.00 4.18
2580 2718 1.014564 CGGCCGTCTTTTCTCCACTC 61.015 60.000 19.50 0.00 0.00 3.51
2581 2719 1.004918 CGGCCGTCTTTTCTCCACT 60.005 57.895 19.50 0.00 0.00 4.00
2582 2720 2.677979 GCGGCCGTCTTTTCTCCAC 61.678 63.158 28.70 0.32 0.00 4.02
2583 2721 2.358247 GCGGCCGTCTTTTCTCCA 60.358 61.111 28.70 0.00 0.00 3.86
2584 2722 3.488090 CGCGGCCGTCTTTTCTCC 61.488 66.667 28.70 5.16 0.00 3.71
2585 2723 2.737376 ACGCGGCCGTCTTTTCTC 60.737 61.111 28.70 5.98 46.39 2.87
2586 2724 2.781595 ATCACGCGGCCGTCTTTTCT 62.782 55.000 28.70 2.82 46.39 2.52
2587 2725 1.908066 AATCACGCGGCCGTCTTTTC 61.908 55.000 28.70 7.66 46.39 2.29
2588 2726 1.512156 AAATCACGCGGCCGTCTTTT 61.512 50.000 28.70 16.06 46.39 2.27
2589 2727 1.908066 GAAATCACGCGGCCGTCTTT 61.908 55.000 28.70 17.90 46.39 2.52
2590 2728 2.358247 AAATCACGCGGCCGTCTT 60.358 55.556 28.70 9.99 46.39 3.01
2591 2729 2.781595 AAGAAATCACGCGGCCGTCT 62.782 55.000 28.70 16.76 46.39 4.18
2592 2730 1.908066 AAAGAAATCACGCGGCCGTC 61.908 55.000 28.70 18.03 46.39 4.79
2594 2732 1.226018 GAAAGAAATCACGCGGCCG 60.226 57.895 24.05 24.05 41.14 6.13
2595 2733 0.521735 AAGAAAGAAATCACGCGGCC 59.478 50.000 12.47 0.00 0.00 6.13
2596 2734 2.095718 AGAAAGAAAGAAATCACGCGGC 60.096 45.455 12.47 0.00 0.00 6.53
2597 2735 3.813529 AGAAAGAAAGAAATCACGCGG 57.186 42.857 12.47 0.00 0.00 6.46
2598 2736 7.603297 TTTTAAGAAAGAAAGAAATCACGCG 57.397 32.000 3.53 3.53 0.00 6.01
2655 2793 9.628746 TTTTGAAACTGGTTAACTAAGTGAAAC 57.371 29.630 13.07 7.57 0.00 2.78
2657 2795 9.628746 GTTTTTGAAACTGGTTAACTAAGTGAA 57.371 29.630 13.07 6.37 0.00 3.18
2658 2796 8.794553 TGTTTTTGAAACTGGTTAACTAAGTGA 58.205 29.630 13.07 1.84 0.00 3.41
2659 2797 8.973835 TGTTTTTGAAACTGGTTAACTAAGTG 57.026 30.769 13.07 0.00 0.00 3.16
2660 2798 9.016438 TCTGTTTTTGAAACTGGTTAACTAAGT 57.984 29.630 5.42 7.08 0.00 2.24
2661 2799 9.285770 GTCTGTTTTTGAAACTGGTTAACTAAG 57.714 33.333 5.42 6.45 0.00 2.18
2662 2800 9.016438 AGTCTGTTTTTGAAACTGGTTAACTAA 57.984 29.630 5.42 0.00 0.00 2.24
2663 2801 8.570068 AGTCTGTTTTTGAAACTGGTTAACTA 57.430 30.769 5.42 0.00 0.00 2.24
2664 2802 7.462571 AGTCTGTTTTTGAAACTGGTTAACT 57.537 32.000 5.42 4.56 0.00 2.24
2665 2803 7.810759 TGAAGTCTGTTTTTGAAACTGGTTAAC 59.189 33.333 0.00 0.00 0.00 2.01
2666 2804 7.810759 GTGAAGTCTGTTTTTGAAACTGGTTAA 59.189 33.333 9.52 0.00 0.00 2.01
2667 2805 7.175990 AGTGAAGTCTGTTTTTGAAACTGGTTA 59.824 33.333 9.52 0.00 0.00 2.85
2668 2806 6.015434 AGTGAAGTCTGTTTTTGAAACTGGTT 60.015 34.615 9.52 5.26 0.00 3.67
2669 2807 5.476945 AGTGAAGTCTGTTTTTGAAACTGGT 59.523 36.000 9.52 0.00 0.00 4.00
2670 2808 5.954335 AGTGAAGTCTGTTTTTGAAACTGG 58.046 37.500 9.52 2.32 0.00 4.00
2671 2809 6.611381 TGAGTGAAGTCTGTTTTTGAAACTG 58.389 36.000 5.30 4.95 0.00 3.16
2672 2810 6.817765 TGAGTGAAGTCTGTTTTTGAAACT 57.182 33.333 5.30 0.00 0.00 2.66
2673 2811 8.466086 AAATGAGTGAAGTCTGTTTTTGAAAC 57.534 30.769 0.00 0.00 0.00 2.78
2674 2812 7.759433 GGAAATGAGTGAAGTCTGTTTTTGAAA 59.241 33.333 0.00 0.00 0.00 2.69
2675 2813 7.257722 GGAAATGAGTGAAGTCTGTTTTTGAA 58.742 34.615 0.00 0.00 0.00 2.69
2676 2814 6.458206 CGGAAATGAGTGAAGTCTGTTTTTGA 60.458 38.462 0.00 0.00 0.00 2.69
2677 2815 5.682862 CGGAAATGAGTGAAGTCTGTTTTTG 59.317 40.000 0.00 0.00 0.00 2.44
2678 2816 5.588648 TCGGAAATGAGTGAAGTCTGTTTTT 59.411 36.000 0.00 0.00 0.00 1.94
2679 2817 5.123227 TCGGAAATGAGTGAAGTCTGTTTT 58.877 37.500 0.00 0.00 0.00 2.43
2680 2818 4.703897 TCGGAAATGAGTGAAGTCTGTTT 58.296 39.130 0.00 0.00 0.00 2.83
2681 2819 4.310769 CTCGGAAATGAGTGAAGTCTGTT 58.689 43.478 0.00 0.00 0.00 3.16
2682 2820 3.862642 GCTCGGAAATGAGTGAAGTCTGT 60.863 47.826 0.00 0.00 38.28 3.41
2683 2821 2.670414 GCTCGGAAATGAGTGAAGTCTG 59.330 50.000 0.00 0.00 38.28 3.51
2684 2822 2.300152 TGCTCGGAAATGAGTGAAGTCT 59.700 45.455 0.00 0.00 38.28 3.24
2685 2823 2.670414 CTGCTCGGAAATGAGTGAAGTC 59.330 50.000 0.00 0.00 38.28 3.01
2686 2824 2.037772 ACTGCTCGGAAATGAGTGAAGT 59.962 45.455 0.00 0.00 38.28 3.01
2687 2825 2.414481 CACTGCTCGGAAATGAGTGAAG 59.586 50.000 0.00 0.00 36.89 3.02
2688 2826 2.037121 TCACTGCTCGGAAATGAGTGAA 59.963 45.455 0.00 0.00 39.98 3.18
2689 2827 1.618343 TCACTGCTCGGAAATGAGTGA 59.382 47.619 0.00 0.00 40.50 3.41
2690 2828 2.084610 TCACTGCTCGGAAATGAGTG 57.915 50.000 0.00 0.00 38.28 3.51
2691 2829 3.340814 AATCACTGCTCGGAAATGAGT 57.659 42.857 0.00 0.00 38.28 3.41
2692 2830 3.242220 CGAAATCACTGCTCGGAAATGAG 60.242 47.826 0.00 0.00 39.05 2.90
2693 2831 2.672874 CGAAATCACTGCTCGGAAATGA 59.327 45.455 0.00 0.00 0.00 2.57
2694 2832 3.043635 CGAAATCACTGCTCGGAAATG 57.956 47.619 0.00 0.00 0.00 2.32
2700 2838 0.179111 TAGGCCGAAATCACTGCTCG 60.179 55.000 0.00 0.00 0.00 5.03
2701 2839 2.246719 ATAGGCCGAAATCACTGCTC 57.753 50.000 0.00 0.00 0.00 4.26
2702 2840 2.092968 TGAATAGGCCGAAATCACTGCT 60.093 45.455 0.00 0.00 0.00 4.24
2703 2841 2.288666 TGAATAGGCCGAAATCACTGC 58.711 47.619 0.00 0.00 0.00 4.40
2704 2842 6.618287 TTTATGAATAGGCCGAAATCACTG 57.382 37.500 6.82 0.00 0.00 3.66
2705 2843 7.639113 TTTTTATGAATAGGCCGAAATCACT 57.361 32.000 6.82 1.48 0.00 3.41
2706 2844 9.959749 TTATTTTTATGAATAGGCCGAAATCAC 57.040 29.630 6.82 0.00 0.00 3.06
2712 2850 9.959749 GTGAAATTATTTTTATGAATAGGCCGA 57.040 29.630 0.00 0.00 0.00 5.54
2713 2851 9.965824 AGTGAAATTATTTTTATGAATAGGCCG 57.034 29.630 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.