>input_sequence_70067
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---ATGGCGGACGTGAAGCTTCTCAACTGCTTCGTCAGTCCGTTCGGAAACAGGGTGCGCATCGCGCTGGCGAAGAAGGG
CGTCGAGTACGAGGAGACGGCCGAGAACATGCTCACCAAGGGCCCGCTGCTGCTGTCGTCCAACCCCGTCCACGCCAAGG
TCCCCGTCCTCCTTGTCGACGGCAAGGCCGTCTGCGAGTCCCTGGTCATCCTCGAGTTCATCGACGAGGCGTTCC-----
-CCGGCGCGCAGCTCCTCCCCGCCGACGCCTACGCGCGCGCCAACGCCCGCTTCTGGGCCGCCTACGTGGACACCAAGGT
AGAGTGTACATTCACTGATTCAGCTGCATACGAAGCTGCTCTCATAACTCGTAAATCATGACTCGTGTGTGCGTGCAGAT
GCCGGAGTGCGCCGGGAAGATCTGGAAGGTGCCGAAGGGCGCGCCGGCCGTGGAGGAGGGGAAGAAGGAGATGGTGGGCG
TGTTCAAGACGCTGGAGGGTGAGCTCGGCGAGAAGCCCTACTTCGGCGGCGACGCGCTCGGGTACGCGGACGTGGCGCTG
GTGACCTTCACCCCGTGGTTCCTGACGTACGAGCGGCTCGGCGGGTTCAGCATCGCGGAGGAGTGCCCCAAGCTGACGGC
CTGGGCGGCGCGGTGCATCGGGGAGAACGAGTGCGTGGCCAAGTCGCTGCCGGACGCCGAGGCTGTGTACCAGTTCGTGG
GCGGCATGAGGAAGCACTTTGGCCTCGAGTAG------------------------------------------------
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>chr5B_1_TraesCS5B01G376800
GTTTGATATCCCAAAATCTGGGATTTTTTTTCAAATTTCTTGGTATTTTTTAAATTTAATGTTCGTATAGGGGTGTGGAG
CACCCAGGTGCTACAAATCCGCTTCCCAACATAGACACACTAGGTTGTTGTGGGCTGTTTTTGAGGGAAGGCCGTGGTAG
GCTCTTCGGCTAACTTGTTT-----ACAGAATGGACATTTGGCCCAATATGGCCAGGGTGGAGTTTTGGCACCTATGTTG
AATGTTGATATTTCCCCAAAAAAAAATCTGTTGAATGTTGAGATACCAGGAGGCAGATCTGAATTTTTTGACATAGGGTT
GCTTTTATTGACTCCAAATGAAGTATCAAGTTGATACAACACAATGAACACACACCCATGCATATGCATAGCTAGGATCT
ACACATCCAACACAATCACATTCACACAC-AAATAAACACGCCGGTAAATAGCAAAGTCATAAAAGACCAAAGTCATGCC
TAAGCGAGGA-TAAAAAACTTCAAAGCAATAAAAATACCTAAATTGATATATTGACCTCAAGCACTGATATATTGATGT-
---------AGGCAAGCATACCTACATTGAGCTTACCTCCATCGGCTAGCTGCACGGACAAGATCACAAAGAACATAGCT
GGCTCCGAAGCATGATG------------TACATGCACAAATGACGCCATCCGGAGCGACACCGAGAAAGCTAATCT-C-
GTCTGGCCC----CATCTCTAAGAAATTA---ACGTACAAATTTCAACGACGTGAGCAAAGCCAGTCCTTCGATGAAACC
GATCTGCACATATACTGATGTTTATTCCTGCTTGCTAGCTTGCACCGAAGAAAGCTAGGGAC----AAGCAAACACAAAC
ACCGAAGGGAGGAGACGTTTCTCACGAGGTCGCAACCAAATGTGCAATGCAGCATTCTCACCCTACATATACGCCTCCAG
TCGGCCGAGAAAACACCAACGCAAACACGCGCCATAAGCCCATAACCTTAACCAGACCCTGATTAACTAGCTCGTT-AAG
GCAATGGCGGACGTGAAGCTTCTCAACTGCTTCGTCAGTCCGTTCGGAAACAGGGTGCGCATCGCGCTGGCGAAGAAGGG
CGTCGAGTACGAGGAGACGGCCGAGAACATGCTCACCAAGGGCCCGCTGCTGCTGTCGTCCAACCCCGTCCACGCCAAGG
TCCCCGTCCTCCTTGTCGACGGCAAGGCCGTCTGCGAGTCCCTGGTCATCCTCGAGTTCATCGACGAGGCGTTCC-----
-CCGGCGCGCAGCTCCTCCCCGCCGACGCCTACGCGCGCGCCAACGCCCGCTTCTGGGCCGCCTACGTGGACACCAAGGT
AGAGTGTACATTCACTGATTCAGCTGCATACGAAGCTGCTCTCATAACTCGTAAATCATGACTCGTGTGTGCGTGCAGAT
GCCGGAGTGCGCCGGGAAGATCTGGAAGGTGCCGAAGGGCGCGCCGGCCGTGGAGGAGGGGAAGAAGGAGATGGTGGGCG
TGTTCAAGACGCTGGAGGGTGAGCTCGGCGAGAAGCCCTACTTCGGCGGCGACGCGCTCGGGTACGCGGACGTGGCGCTG
GTGACCTTCACCCCGTGGTTCCTGACGTACGAGCGGCTCGGCGGGTTCAGCATCGCGGAGGAGTGCCCCAAGCTGACGGC
CTGGGCGGCGCGGTGCATCGGGGAGAACGAGTGCGTGGCCAAGTCGCTGCCGGACGCCGAGGCTGTGTACCAGTTCGTGG
GCGGCATGAGGAAGCACTTTGGCCTCGAGTAGTTTTGCTCGATCCGCCAGCTGCGTACGTCGGTATGATGAGCAG-----
--AATAAGCTAGCCGGGTGGCCGGCCGGCCGGC---------AATCAGCACTTGCATGCCTGC-----------------
------------------GCGCAAGTGCAATCGTGCGTCTCCTTGTC-GACTGCACTGTTGTTTCCTCCGTCCGTCTCAG
TCGTTTGTGCTTTT-------------ATTATTTGTTTGGGTACTGCTGGCTCCGTGCTCTGTGCACGGCCGGCGATTGA
TTTCTAG--------TTTCTCAGTAGCGTCGTTCATGGACCGTACCGCCCCTGTAATCTGTGTACCGGATCAAGGAATAA
AATACAGGCACGACACATGT------TGTTCTGTTTTATTGCCATCCAATCGTTCCA--------GCGTGTGTGAGTTTG
TTTGCGGCGAAATCAATCAAGCTCCTTCCGAGGCTGCCGAACAAATGCCATCAATCGGTGGACAGAGGATAAACTTGCTT
GCATGCAAGAACTTTGTACCATTGCGT-AATTCTGAATTGCATTTCTTATTCTTCGGTTATGCCTTTTGGCATCGTATTT
GAAATTTTAAGTTTCGAATTACTCCCTCCGTCCCATAATATAAAAGCGTTTTTGAAGGACAATGATTAAGGTATCTATCT
GCTCGAGCGTATGAGCTGGCTAAAGTCAACAAGAAAGATGCGTGTAGGCGCGGGCGAGGTGTAACGCGGCTTGTATAGGC
CGAGAAAATGGTTTTTATATCCGCAAGTTTTTTTTTCGTGTAACGGTGAAGAATCAATTGGCAAATGATTTTTGTTGCGC
AATACAGAGAGTGGAGATGAAATGCAACCGTTGCATGTCAGGTTTGTATCAGCTCTTAGTTATGAGATAGAGTGGTCGAG
TGGAGAAAAGACGGCCGCGTGATTTCTTTCTTTCTTAAAAAAGACTTCTATTTTATTTTACTTAGTTAACCAGTTTCACT
TAGTTAACCAGTTTCAAAAACAGACTTCACTCATTTCCGAGCAGTGATTTCGGCCTATTCATAAAAATAATTTCACTTAC
>chr5A_109
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----------------------------ACATAGACACACTAGATTGTGGTGGGCTCTTTT-GAGGGAAGGCTGTGGTAG
GCTCTTTG-CTAACTTGTTTCTTCAACCAAATGGACATTTGGCCCAACATGGTAAGGGTGGAGTTTTGGCACCTATGTTG
AATGTTGA---------------------------------GATACCAGGTGGCAGGTCCAATTTTTTCAACAAAGGGTT
GATTTTATTGACTCCAAATAAAGCATCAAGCGGATACAACACAATGAACACACACCC-TGCATATGCATAGCTAGGACAC
ACACAACCAACACAATCACATACACATATTAAATAAACATGCCGATAAATAGCAAAGTCATAAAAGACCATAGTCATGCC
TAAGCAAGGG-CAAAAAACTTGGAAGCAATCAAAATACCTAAATTGGTATATTGACCTCAAACCCTGATATACTGATATA
T----------GCAATCATACCTACATTGAGCTTACCTCCATCGGCTAGCTGGAGGGACAAGACCACAAAGAACATAGCT
GGCTCCGAAGCATGACTTATAGTCTTATATACATG--CAAATGACGCCATCCGGAGCGACACCGAGAAAGGTAAGCTCC-
GTCTGGCCC----CATCTCTAAGAAATTATTAACGAACAAATTTCAACGACGTGAGCAAAGCCAGTCCTTCGATGAAACC
GATCTGCACATA--CTCATGCTTATTCCTGCTTGC------------------GCTAGGGACAAGAAAGCAACCAAAAAC
ACCGAA---AGCAGACGTTTCTCACGAGGTCGCAGCAAAGTGTGCCAT---GCATTCGGACCCTACATATACGCCCCCAG
TCGACCGAGAAAATACCAACGCAAACACACGCCATAAGCCCATAACCTTAACCAGACCCTGATTAACTAGCTCATCAAAA
GCAATGGCGACCGTGAAGCTTCTCAACTGCTTCGTCAGCCCGTTCGGGAACAGGGTGAAGATCGCGCTGGCGAAGAAGGG
CGTGGAGTACGAGGAGACGGCCGAGAACATGGTCGCCAAGGGCCCGCTGCTGCTGTCGTCCAACCCCGTCCACGCCAAGG
TCCCCGTCCTCCTCGTCGACGGCAAGGCCGTCTGCGAGTCCCTCGTCATCCTCGAGTTCATCGACGAGGCCTTCGCCGGC
ACCGGCGCGCAGCTCCTCCCCGCCGACGCCTACGCGCGCGCCAACGCCCGCTTCTGGGCCGCCTACGTGGACACCAAGGT
AGAGTCTACATCCACTGATTCAGCTGCTTACGAAGCTGCTC---------GTAAGCCATAACTCGCGTGTGCGTGCAGAT
GCCGGAGTGCGCCGGGAAGATCTGGAAGGTGCCGAAGGGCGCGCCGGCGGTGGAGGAAGGGAAGAAGGAGATGGTGGGCG
TGTTCAAGACCCTGGAGGGGGAGCTCGGCGAGAAGCCCTACTTCGGCGGCGACGCGCTCGGGTACGCGGACGTGGCGCTG
GTGACCTTCGTCCCCTGGTTCCTGACGTACGAGCGGCTCGCCGGGTTCAGCATCGCGGAGGAGTGCCCGACGCTGACGGC
CTGGGCGGCGCGGTGCGCCAAGGAGAACGAGTGCGTGGCCAAGTCGCTGCCGGACGCCGAGGCCGTGTTCCAGTTCGTGG
GCGGCATGAGGAAGCACTTTGGCCTCGAGTAACTTTGCTCGATCCGCCAGCTGCGTACGTCCGTATGATGCGTAC-----
--AATAAGCTAGCCGGCTAGCCGGCCGGCAATGGGCAATCTGAATCAGCACTTGCACGTCT-------------------
------------------------GTGCAATCGTGCGTCTCCTTGTCAGACTGCACTGTTGTTTCCTCCGTC----TCAG
TCGTTTGTGCCTTTTATCTTTATTATTATTAT----TTGGGTACTGCTGGCTCCGTGCTTTGTGCTCGGCCGGCGATCGA
TTTCTAGTTTCTCACTTTCTCAGTAGCGTCGTTCATGGACCGTACC--CCCTGTAATCTGTGTACCGGGTCAAGGAATAA
AAAACTGGCACGACACATGTCTGTTTTGTTTTGTTCTGTTGCCATCCAATCGTTCCACTGTTCCAGCGTGTGTGCGTTTG
TTTGCGGCGAAATCAATCAAGCTCCTTCCGAGGCTGCCGAAGAAGTGCCATCAATCGGTGGACAGAGGATAAACTTGCTT
GCATGCAAGAACTTTGTACCATTGCGTGAATTCTGAATTGCATTTCTTCGGCTATG-----GCTTTCTGGCATCGTATTT
TGAATATTT-----------------------------------------------------------------------
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>chr5D_109
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----------------------------ACACAGACACACTAGGTTGTGGTGGGCTCTTTTTGAGGGAAGGTTGTGGTGG
ACTCTTTGGCTAACTTGTTTCTTCAACTGAATGGACATTTGGCCCAACATGGCGA-GGTGGAGTTTTGGCACCTATGTTG
AATGTTGA---------------------------------GTTACCGGGCGGCCGTTCCAATTTTTTCGACAAAGGGTT
GATTTTATTGACTCCAAATGAAGCATCAAGTGGATACAACACAATCAACACACACCC-TGCATATGCATAGCTACGATGC
ACACAACTAACACAATCAAATACGCACAC-AAATAAACACACCAGTAAGTAGCAAAGTCATAAAAGATCAAAGTCATGCC
TAAGTGAGGACCAAAAAACTTGGAAGCAATCAAAATACCTAAATTGATATAGTGACCTCAAACCCTGATATATTGATATT
TTTTTAGAAAGGCAAGCATACCTACATTGAGCTTACCTCCATCGGCCAGCTGCAGGGACAAGATCACAAAGAACATAGCT
GGCTCCGAAGCATGATG------------TACATG--CAAATGACGCCATCCGGAGCGACACCGAGAAAGCTAATCT-CC
GTCTGGCCCCATGCATCTCTAAGAAATTA---ACGTACAAATTTCAACGACGTGAGCAAAGCCAGTCCTTCGATGAAACC
GATCTGCACATA--CTGATGTTTATTCCTGCTTGCTAGCGCGCACCGAAGCAAGCTAGGGAC----AAACAAACAGAAAC
ACCGAA---AGGAGACGTTTCTCACGAGGTCGTAACCAAATGTGCCATGCAGCATTCTGACCCTACATATACGCCCCCAG
TCGACCGAGGAAACATCAACGCAAACACGCGCCATAAGCCCATAACCCTAACCAGACCCTGATTAACTAGCTCGTT-AAG
GCAATGGCGGCCGTGAAGCTGCTCAATTGCTTCGTCAGCCCGTTCGGCAATAGGGTGCGGATCGCGCTGGCGAAGAAGGG
CGTGGAGTACGAGGAGACGGCCGAGAACATGGTCACCAAGGGCCCGCTGCTGCTGTCGTCCAACCCCGTCCACGCCAAGG
TCCCCGTCCTCCTCGTCGACGGCAAGGCCGTCTGCGAGTCCCTGGTCATCCTCGAGTTCATCGACGAGGCGTTCGCCGGC
ACCGGCGCGCAGCTCCTCCCCGCCGACGCCTACGCGCGCGCCAACGCCCGCTTCTGGGCCGCCTACGTCGATGCCAAGGT
AGAGTCTACATCCACTGATTCAGCTGCTTACGAAGCTGCTCTCGTAACTCGTAAATCATGACTCGTGTGTGCGTGCAGAT
GCCGGAGTGCGCCGGGAAGATCTGGAAGGTGCCGAAGGGCGCGCCGGCGGTGGAGGAGGGGAAGAAGGAGATGGTGGGCG
TGTTCAAGACGCTGGAGGGGGAGCTGGGCGAGAAGCCCTACTTCGGCGGCGAGGCGCTCGGGTACGCGGACGTGGCGCTG
GTGACCTTCACCCCGTGGTTCCTGACGTACGAGCGGCTCGCCGGGTTCAGCATCGCGGAGGAGTGCCCCAAGCTGACGGC
ATGGGCGGCGCGGTGCGTCGGGGAGAACGAGTGCGTGGCCAAGTCGCTGCCGGACGCCGAGGCCGTGTACCAGTTCGTGG
GCGGCATGAGGAAGCACTTTGGCCTCGAGTAGCTTTGCTCGATCCGCCAGCTGCGTACGTCAGTATGATGATGAGTACAA
TTAATAAGCTAGCCGGGTGGCCGGCCGGCCGGC---------AATCAGCACTCGCACGTACGTGTCGCATGCGTCGTCGC
GCATGCATGCATGCCTGTGCGCAAGTGCAGTCGTGCGTCTCCTTGTC-GACTGCACTGTTGTTTCCTCCGTCCGTCTCAG
TCGTTTGTGCTTTT-------------ATTAT----TTGGGTACTGCTGGCTCCGTGCTTTGTGCTCGGCCGGCGACCA-
------------------------------GTTCATGGACCGTCCCGCCCCTGTAACCTGTGTGCCGGATCAAGGAATAA
AAAACAGGCATGACACATGT------TGTTCTGTTCTGTTACCATCCA--------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------S-------S---------------S-------
------S--------------------S-------------------S-----S--------------------------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-----S--SS-S-----S----S------
-S---------------------S-------S-------------------------S--------------------SS
-----S---------------S----------------------------------------------------------
-----------S---------SS-------S------------------------------S-S-------------S--
------------------------------------------------------S-------------------------
-----------------------------------SS-------------------------------------------
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------------SS-------------------------SS---------S------------------------S----
------SSS------------------------------------S------------S----------------S----
---S----------------------------------------------------------------------------
----------S---------------------------S--------S-----------S--------------------
---S---------------------------S------------------------------------------------
-------------S------------------------------------------------------------S-----
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-----S-----S---------------S---------------S------------------------------------
------------------------------------------------S-------------------------------
-------------------S------------------------------------------------------------
----------------------------------------S---------------------------------------
----------------S----------------------------------------------S----------------
--------------------------------S----------------------------S----------S-------
--------------------------------------------------------S-S---S-----------------
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--------------------------------SSSS-----------------------S-----S-----------S--
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--S--------------------------------S-S------------------------------------S-----
-----------------------------------------S--S-----------------------------------
------------------------------------------------SSS--SS-SSSSS--S--S-------------
SS---S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_82
--------------------------------------------------------------TCGTATAGGGGTGTGGAG
CA------------------------------------------------------------------------------
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>reverse_2033
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--------------------------------TTGTTTGGGTACTGCTGGCT----------------------------
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