Multiple sequence alignment - TraesCS5B01G362600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G362600 chr5B 100.000 4199 0 0 1 4199 541915322 541919520 0.000000e+00 7755.0
1 TraesCS5B01G362600 chr5B 98.684 76 1 0 4063 4138 541919346 541919421 7.320000e-28 135.0
2 TraesCS5B01G362600 chr5B 98.684 76 1 0 4025 4100 541919384 541919459 7.320000e-28 135.0
3 TraesCS5B01G362600 chr5B 97.368 38 1 0 4101 4138 541919346 541919383 9.740000e-07 65.8
4 TraesCS5B01G362600 chr5B 97.368 38 1 0 4025 4062 541919422 541919459 9.740000e-07 65.8
5 TraesCS5B01G362600 chr5D 91.553 2557 144 35 722 3249 444887746 444890259 0.000000e+00 3459.0
6 TraesCS5B01G362600 chr5D 93.566 544 25 9 3275 3817 444890256 444890790 0.000000e+00 802.0
7 TraesCS5B01G362600 chr5D 83.240 716 25 30 11 635 444887038 444887749 1.690000e-158 569.0
8 TraesCS5B01G362600 chr5D 94.030 67 3 1 3867 3933 435682944 435682879 2.670000e-17 100.0
9 TraesCS5B01G362600 chr5D 91.176 68 4 2 3867 3933 156747622 156747688 1.610000e-14 91.6
10 TraesCS5B01G362600 chr5A 87.376 2527 169 70 311 2772 561809897 561812338 0.000000e+00 2761.0
11 TraesCS5B01G362600 chr5A 84.335 1098 95 33 2776 3836 561812425 561813482 0.000000e+00 1003.0
12 TraesCS5B01G362600 chr5A 92.045 176 8 3 1 173 561809226 561809398 4.190000e-60 243.0
13 TraesCS5B01G362600 chr5A 94.656 131 7 0 3932 4062 316506620 316506750 1.980000e-48 204.0
14 TraesCS5B01G362600 chr5A 98.113 106 2 0 1726 1831 605801513 605801408 7.170000e-43 185.0
15 TraesCS5B01G362600 chr5A 95.876 97 4 0 4101 4197 316506713 316506809 1.560000e-34 158.0
16 TraesCS5B01G362600 chr5A 96.667 90 2 1 165 254 561809443 561809531 9.410000e-32 148.0
17 TraesCS5B01G362600 chr5A 95.556 90 4 0 1914 2003 605801410 605801321 1.220000e-30 145.0
18 TraesCS5B01G362600 chr2D 83.007 306 24 15 1298 1601 643078861 643079140 6.970000e-63 252.0
19 TraesCS5B01G362600 chr2D 91.176 68 4 2 3867 3933 429518922 429518856 1.610000e-14 91.6
20 TraesCS5B01G362600 chr4A 97.674 129 3 0 3934 4062 647171231 647171103 5.460000e-54 222.0
21 TraesCS5B01G362600 chr4A 92.647 68 3 2 3867 3933 55532373 55532307 3.460000e-16 97.1
22 TraesCS5B01G362600 chr4A 93.750 64 3 1 3871 3933 55538654 55538591 1.240000e-15 95.3
23 TraesCS5B01G362600 chr4A 81.188 101 14 5 3929 4027 133839474 133839377 4.500000e-10 76.8
24 TraesCS5B01G362600 chr1A 93.985 133 8 0 3930 4062 446144185 446144053 7.120000e-48 202.0
25 TraesCS5B01G362600 chr1A 96.970 99 3 0 4101 4199 446144090 446143992 2.600000e-37 167.0
26 TraesCS5B01G362600 chr1A 92.793 111 8 0 1323 1433 9479165 9479275 1.210000e-35 161.0
27 TraesCS5B01G362600 chr1A 92.424 66 3 2 3867 3931 272659159 272659223 4.470000e-15 93.5
28 TraesCS5B01G362600 chr6B 91.971 137 5 1 3932 4062 503896507 503896371 1.990000e-43 187.0
29 TraesCS5B01G362600 chr6B 94.949 99 5 0 4101 4199 503896408 503896310 5.620000e-34 156.0
30 TraesCS5B01G362600 chrUn 98.113 106 2 0 1726 1831 129540936 129541041 7.170000e-43 185.0
31 TraesCS5B01G362600 chrUn 92.222 90 7 0 1914 2003 129541039 129541128 1.230000e-25 128.0
32 TraesCS5B01G362600 chr1B 93.333 90 6 0 1914 2003 453199612 453199523 2.630000e-27 134.0
33 TraesCS5B01G362600 chr1B 94.000 50 1 2 3929 3977 666360336 666360384 1.620000e-09 75.0
34 TraesCS5B01G362600 chr6A 98.551 69 1 0 1728 1796 212356367 212356435 5.700000e-24 122.0
35 TraesCS5B01G362600 chr1D 93.846 65 2 2 3867 3930 324262475 324262538 3.460000e-16 97.1
36 TraesCS5B01G362600 chr7A 92.424 66 3 2 3867 3931 102118830 102118766 4.470000e-15 93.5
37 TraesCS5B01G362600 chr6D 91.176 68 4 2 3867 3933 168068830 168068896 1.610000e-14 91.6
38 TraesCS5B01G362600 chr3B 87.500 48 3 3 3929 3976 480374403 480374447 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G362600 chr5B 541915322 541919520 4198 False 1631.32 7755 98.42080 1 4199 5 chr5B.!!$F1 4198
1 TraesCS5B01G362600 chr5D 444887038 444890790 3752 False 1610.00 3459 89.45300 11 3817 3 chr5D.!!$F2 3806
2 TraesCS5B01G362600 chr5A 561809226 561813482 4256 False 1038.75 2761 90.10575 1 3836 4 chr5A.!!$F2 3835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
962 1405 0.179097 CCTCTGCTTAAGCTCGGTCC 60.179 60.0 26.9 0.0 42.66 4.46 F
1625 2083 1.989966 GCCGAGAAGACCGTCGATCA 61.990 60.0 0.0 0.0 38.50 2.92 F
2518 3010 0.451783 CGCTGTTCTACCATTTGGCC 59.548 55.0 0.0 0.0 39.32 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2139 2619 0.171231 GAAGCCGGAAATGCACTTCC 59.829 55.0 17.0 17.0 41.40 3.46 R
3178 3796 0.889186 CACCCTGAACCTGAAACCCG 60.889 60.0 0.0 0.0 0.00 5.28 R
4161 4787 0.033109 AATGGCCCAAACTAGAGCCC 60.033 55.0 0.0 0.0 45.14 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 73 3.431415 ACGGTTGGGGTTGGGGTT 61.431 61.111 0.00 0.00 0.00 4.11
57 74 2.915137 CGGTTGGGGTTGGGGTTG 60.915 66.667 0.00 0.00 0.00 3.77
58 75 2.525629 GGTTGGGGTTGGGGTTGG 60.526 66.667 0.00 0.00 0.00 3.77
59 76 2.525629 GTTGGGGTTGGGGTTGGG 60.526 66.667 0.00 0.00 0.00 4.12
62 79 4.310600 GGGGTTGGGGTTGGGGTC 62.311 72.222 0.00 0.00 0.00 4.46
63 80 3.513566 GGGTTGGGGTTGGGGTCA 61.514 66.667 0.00 0.00 0.00 4.02
107 124 0.572590 CGACAGCGACGAATCAATCC 59.427 55.000 0.00 0.00 40.82 3.01
505 913 2.357952 GTCTTTTGACCGCTCCAAACTT 59.642 45.455 0.00 0.00 43.37 2.66
506 914 2.357637 TCTTTTGACCGCTCCAAACTTG 59.642 45.455 0.00 0.00 33.74 3.16
528 937 1.747444 TTCTTGCTTCTCTTCCCCCT 58.253 50.000 0.00 0.00 0.00 4.79
685 1100 0.621862 AGCTCCTCCCGAAATTCCCT 60.622 55.000 0.00 0.00 0.00 4.20
703 1118 0.685097 CTTCTTTCGTCACCCCTGGA 59.315 55.000 0.00 0.00 0.00 3.86
749 1164 2.203126 CCGATCCCAGCTTCAGGC 60.203 66.667 0.00 0.00 42.19 4.85
750 1165 2.203126 CGATCCCAGCTTCAGGCC 60.203 66.667 0.00 0.00 43.05 5.19
751 1166 3.001514 GATCCCAGCTTCAGGCCA 58.998 61.111 5.01 0.00 43.05 5.36
752 1167 1.153005 GATCCCAGCTTCAGGCCAG 60.153 63.158 5.01 0.00 43.05 4.85
765 1181 2.044946 GCCAGGGACACACCATCC 60.045 66.667 0.00 0.00 41.20 3.51
803 1219 2.964310 GCAGGCCTCCAGCTTCAGA 61.964 63.158 0.00 0.00 43.05 3.27
807 1223 0.545646 GGCCTCCAGCTTCAGAGATT 59.454 55.000 0.00 0.00 43.05 2.40
811 1227 2.553086 CTCCAGCTTCAGAGATTGAGC 58.447 52.381 0.00 0.00 37.07 4.26
812 1228 1.209019 TCCAGCTTCAGAGATTGAGCC 59.791 52.381 0.00 0.00 37.07 4.70
834 1250 0.247736 GCTCTTCTTCTTCCCGAGCA 59.752 55.000 0.00 0.00 44.74 4.26
840 1256 3.252974 TCTTCTTCCCGAGCAGAATTC 57.747 47.619 0.00 0.00 0.00 2.17
842 1258 2.680312 TCTTCCCGAGCAGAATTCAG 57.320 50.000 8.44 0.00 0.00 3.02
898 1341 1.657556 GAGAGGGATCTTCTCGCCG 59.342 63.158 10.58 0.00 37.53 6.46
899 1342 0.820074 GAGAGGGATCTTCTCGCCGA 60.820 60.000 10.58 0.00 37.53 5.54
900 1343 1.104577 AGAGGGATCTTCTCGCCGAC 61.105 60.000 9.71 0.00 37.53 4.79
901 1344 1.379977 AGGGATCTTCTCGCCGACA 60.380 57.895 0.00 0.00 37.53 4.35
902 1345 1.066587 GGGATCTTCTCGCCGACAG 59.933 63.158 0.00 0.00 0.00 3.51
903 1346 1.384989 GGGATCTTCTCGCCGACAGA 61.385 60.000 0.00 0.00 0.00 3.41
904 1347 0.248702 GGATCTTCTCGCCGACAGAC 60.249 60.000 0.00 0.00 0.00 3.51
905 1348 0.736053 GATCTTCTCGCCGACAGACT 59.264 55.000 0.00 0.00 0.00 3.24
936 1379 2.932234 CGGTCTCGGTCCAACTGCT 61.932 63.158 0.00 0.00 0.00 4.24
958 1401 0.809241 CCTGCCTCTGCTTAAGCTCG 60.809 60.000 26.90 17.81 42.66 5.03
961 1404 0.808060 GCCTCTGCTTAAGCTCGGTC 60.808 60.000 26.90 15.39 42.66 4.79
962 1405 0.179097 CCTCTGCTTAAGCTCGGTCC 60.179 60.000 26.90 0.00 42.66 4.46
980 1423 2.676471 CCAGTTTTGGGGCTCCGG 60.676 66.667 0.00 0.00 41.05 5.14
1447 1905 4.124351 CGCAACCGGAGCCGAGTA 62.124 66.667 9.46 0.00 42.83 2.59
1625 2083 1.989966 GCCGAGAAGACCGTCGATCA 61.990 60.000 0.00 0.00 38.50 2.92
1643 2101 3.050275 GGCCACGCACAAGGAGAC 61.050 66.667 0.00 0.00 0.00 3.36
1706 2164 2.270527 GAGCAAGGAGGTGGAGGC 59.729 66.667 0.00 0.00 0.00 4.70
1765 2223 4.162690 CGGGGAGGAAGCGGAAGG 62.163 72.222 0.00 0.00 0.00 3.46
1889 2347 2.492090 CGAGGCCGAGGTGAAGAG 59.508 66.667 0.00 0.00 38.22 2.85
1989 2450 3.177249 GAGTGCGTCGGCGGTAAC 61.177 66.667 13.05 0.00 44.10 2.50
2045 2506 5.508994 CCAAGAAAGGCGAAAATGGTTAGTT 60.509 40.000 0.00 0.00 0.00 2.24
2054 2515 6.440436 GCGAAAATGGTTAGTTCCAACTTAA 58.560 36.000 0.00 0.00 41.09 1.85
2055 2516 6.919115 GCGAAAATGGTTAGTTCCAACTTAAA 59.081 34.615 0.00 0.00 41.09 1.52
2056 2517 7.435784 GCGAAAATGGTTAGTTCCAACTTAAAA 59.564 33.333 0.00 0.00 41.09 1.52
2057 2518 8.748582 CGAAAATGGTTAGTTCCAACTTAAAAC 58.251 33.333 0.00 0.00 41.09 2.43
2058 2519 8.951787 AAAATGGTTAGTTCCAACTTAAAACC 57.048 30.769 12.79 12.79 41.92 3.27
2060 2521 6.702716 TGGTTAGTTCCAACTTAAAACCAG 57.297 37.500 16.42 0.00 44.27 4.00
2061 2522 5.068067 TGGTTAGTTCCAACTTAAAACCAGC 59.932 40.000 16.42 0.00 44.27 4.85
2062 2523 5.301045 GGTTAGTTCCAACTTAAAACCAGCT 59.699 40.000 14.09 0.00 41.52 4.24
2063 2524 6.183360 GGTTAGTTCCAACTTAAAACCAGCTT 60.183 38.462 14.09 0.00 41.52 3.74
2064 2525 7.013559 GGTTAGTTCCAACTTAAAACCAGCTTA 59.986 37.037 14.09 0.00 41.52 3.09
2101 2581 4.393990 TGTTCATATTCAGTGCTGCAAGAG 59.606 41.667 2.77 0.00 34.07 2.85
2126 2606 5.097742 TCCTAAATGGTGTATGGTGTGAG 57.902 43.478 0.00 0.00 37.07 3.51
2127 2607 4.780554 TCCTAAATGGTGTATGGTGTGAGA 59.219 41.667 0.00 0.00 37.07 3.27
2133 2613 3.390967 TGGTGTATGGTGTGAGATATGGG 59.609 47.826 0.00 0.00 0.00 4.00
2139 2619 4.687901 TGGTGTGAGATATGGGTATGTG 57.312 45.455 0.00 0.00 0.00 3.21
2277 2757 4.141869 GGGAAATTGCAGCATGAGGTTATT 60.142 41.667 0.00 0.00 39.69 1.40
2285 2765 3.019564 AGCATGAGGTTATTCTTGCACC 58.980 45.455 13.86 0.00 45.53 5.01
2313 2799 6.540438 TGGTAACTACTAGGAACAAGATGG 57.460 41.667 0.00 0.00 37.61 3.51
2320 2806 3.772025 ACTAGGAACAAGATGGTCTCTGG 59.228 47.826 0.00 0.00 33.75 3.86
2329 2815 4.751767 AGATGGTCTCTGGATTCACTTC 57.248 45.455 0.00 0.00 31.12 3.01
2333 2819 3.007290 TGGTCTCTGGATTCACTTCAGTG 59.993 47.826 0.02 0.02 46.91 3.66
2345 2831 3.623060 TCACTTCAGTGTTTGCTTCAGAC 59.377 43.478 6.84 0.00 45.76 3.51
2349 2835 3.990092 TCAGTGTTTGCTTCAGACGTAT 58.010 40.909 0.00 0.00 0.00 3.06
2350 2836 5.128992 TCAGTGTTTGCTTCAGACGTATA 57.871 39.130 0.00 0.00 0.00 1.47
2351 2837 4.921515 TCAGTGTTTGCTTCAGACGTATAC 59.078 41.667 0.00 0.00 0.00 1.47
2377 2863 7.138692 ACTAAAGCAGCTTTTCATTCTGTAG 57.861 36.000 25.29 14.89 35.21 2.74
2485 2977 2.152830 CCTTCCTATCGAGACCTACCG 58.847 57.143 0.00 0.00 0.00 4.02
2518 3010 0.451783 CGCTGTTCTACCATTTGGCC 59.548 55.000 0.00 0.00 39.32 5.36
2520 3012 1.094785 CTGTTCTACCATTTGGCCGG 58.905 55.000 0.00 0.00 39.32 6.13
2557 3050 3.258228 CCGTGTGTTGCTATGTATGACA 58.742 45.455 0.00 0.00 0.00 3.58
2558 3051 3.306973 CCGTGTGTTGCTATGTATGACAG 59.693 47.826 0.00 0.00 0.00 3.51
2559 3052 4.173256 CGTGTGTTGCTATGTATGACAGA 58.827 43.478 0.00 0.00 0.00 3.41
2560 3053 4.031765 CGTGTGTTGCTATGTATGACAGAC 59.968 45.833 0.00 0.00 32.94 3.51
2594 3087 8.625651 GGGTTATTTTATTGGCAAAAACAAAGT 58.374 29.630 3.01 2.61 31.54 2.66
2609 3102 3.855858 ACAAAGTGAAAAACCGCATGTT 58.144 36.364 0.00 0.00 39.43 2.71
2860 3449 9.914131 GGCCAAAATATAATCTCCTCATTAAAC 57.086 33.333 0.00 0.00 0.00 2.01
2953 3559 4.504916 CCTGCTGCGAGGAGTCGG 62.505 72.222 11.25 0.00 46.91 4.79
3015 3621 8.372521 CAAAATTTAGGCGTGCTTATTTAGTTG 58.627 33.333 0.00 0.00 0.00 3.16
3022 3628 4.081761 CGTGCTTATTTAGTTGCAAGACG 58.918 43.478 0.00 0.00 37.15 4.18
3178 3796 6.560253 TCTCTTCTCAACAATTTGGCTTAC 57.440 37.500 0.78 0.00 33.06 2.34
3223 3841 3.244181 GGCCAATCAAAACACCTGTGAAT 60.244 43.478 0.00 0.00 0.00 2.57
3234 3852 4.074970 ACACCTGTGAATTGTGATTCTCC 58.925 43.478 3.94 0.00 41.80 3.71
3245 3863 3.468326 GATTCTCCTCCCCTGGCGC 62.468 68.421 0.00 0.00 0.00 6.53
3263 3881 0.438830 GCCGCACGAGTTCTAAACAG 59.561 55.000 0.00 0.00 0.00 3.16
3275 3893 3.814005 TCTAAACAGAAGGCCGGTATC 57.186 47.619 1.90 0.00 0.00 2.24
3276 3894 2.100252 TCTAAACAGAAGGCCGGTATCG 59.900 50.000 1.90 0.00 0.00 2.92
3319 3938 8.345565 GGAAAATGTATGTCGATTGATTTAGCT 58.654 33.333 0.00 0.00 0.00 3.32
3363 3982 5.007385 AGTGTAGCCGTAAAGATCGAAAT 57.993 39.130 0.00 0.00 0.00 2.17
3378 3997 2.744741 TCGAAATGCAATAACGGAAGCA 59.255 40.909 0.00 0.00 41.73 3.91
3379 3998 2.845967 CGAAATGCAATAACGGAAGCAC 59.154 45.455 0.00 0.00 40.14 4.40
3381 4000 1.832883 ATGCAATAACGGAAGCACCA 58.167 45.000 0.00 0.00 40.14 4.17
3483 4102 5.830912 TGCATTCCTACTGAAACTGTTTTG 58.169 37.500 7.28 6.47 36.33 2.44
3492 4111 4.022416 ACTGAAACTGTTTTGCTGACAACA 60.022 37.500 7.28 0.00 34.87 3.33
3493 4112 5.070770 TGAAACTGTTTTGCTGACAACAT 57.929 34.783 7.28 0.00 34.87 2.71
3546 4172 3.512516 GCCGGATGCTTGAGGTGC 61.513 66.667 5.05 0.00 36.87 5.01
3763 4389 1.628340 GGGCTACCCTTTTTGCCAAAT 59.372 47.619 5.21 0.00 46.53 2.32
3770 4396 7.608376 GGCTACCCTTTTTGCCAAATAAATAAA 59.392 33.333 0.00 0.00 44.34 1.40
3771 4397 9.173021 GCTACCCTTTTTGCCAAATAAATAAAT 57.827 29.630 0.00 0.00 0.00 1.40
3795 4421 1.815421 CATCTGCCAGTGTACCCGC 60.815 63.158 0.00 0.00 0.00 6.13
3822 4448 2.749800 GCCCCCAATACTTTAGCTCAGG 60.750 54.545 0.00 0.00 0.00 3.86
3830 4456 6.599244 CCAATACTTTAGCTCAGGAACATGAA 59.401 38.462 0.00 0.00 0.00 2.57
3848 4474 6.748333 CATGAACATGTGGTTAACTCAGAT 57.252 37.500 0.00 3.53 40.63 2.90
3849 4475 6.779117 CATGAACATGTGGTTAACTCAGATC 58.221 40.000 0.00 6.31 40.63 2.75
3850 4476 4.929211 TGAACATGTGGTTAACTCAGATCG 59.071 41.667 0.00 4.56 40.63 3.69
3851 4477 3.861840 ACATGTGGTTAACTCAGATCGG 58.138 45.455 5.42 0.00 0.00 4.18
3852 4478 2.380084 TGTGGTTAACTCAGATCGGC 57.620 50.000 5.42 0.00 0.00 5.54
3853 4479 1.621317 TGTGGTTAACTCAGATCGGCA 59.379 47.619 5.42 0.00 0.00 5.69
3854 4480 2.000447 GTGGTTAACTCAGATCGGCAC 59.000 52.381 5.42 0.00 0.00 5.01
3855 4481 1.066430 TGGTTAACTCAGATCGGCACC 60.066 52.381 5.42 0.00 0.00 5.01
3856 4482 1.066430 GGTTAACTCAGATCGGCACCA 60.066 52.381 5.42 0.00 0.00 4.17
3857 4483 2.000447 GTTAACTCAGATCGGCACCAC 59.000 52.381 0.00 0.00 0.00 4.16
3858 4484 0.535335 TAACTCAGATCGGCACCACC 59.465 55.000 0.00 0.00 0.00 4.61
3859 4485 2.185310 AACTCAGATCGGCACCACCC 62.185 60.000 0.00 0.00 33.26 4.61
3876 4502 3.458579 CGCGAGGAACGTGTCGTG 61.459 66.667 0.00 13.49 45.77 4.35
3877 4503 3.103911 GCGAGGAACGTGTCGTGG 61.104 66.667 14.44 7.32 39.99 4.94
3878 4504 2.333938 CGAGGAACGTGTCGTGGT 59.666 61.111 6.98 0.00 39.99 4.16
3879 4505 1.299620 CGAGGAACGTGTCGTGGTT 60.300 57.895 6.98 0.00 39.99 3.67
3880 4506 0.872881 CGAGGAACGTGTCGTGGTTT 60.873 55.000 6.98 0.00 39.99 3.27
3881 4507 1.292992 GAGGAACGTGTCGTGGTTTT 58.707 50.000 0.00 0.00 39.99 2.43
3882 4508 1.004292 GAGGAACGTGTCGTGGTTTTG 60.004 52.381 0.00 0.00 39.99 2.44
3883 4509 0.728542 GGAACGTGTCGTGGTTTTGT 59.271 50.000 0.00 0.00 39.99 2.83
3884 4510 1.267682 GGAACGTGTCGTGGTTTTGTC 60.268 52.381 0.00 0.00 39.99 3.18
3885 4511 1.394227 GAACGTGTCGTGGTTTTGTCA 59.606 47.619 0.00 0.00 39.99 3.58
3886 4512 0.722848 ACGTGTCGTGGTTTTGTCAC 59.277 50.000 0.00 0.00 39.18 3.67
3892 4518 3.723554 GTGGTTTTGTCACGGCAAA 57.276 47.368 0.00 0.00 36.67 3.68
3893 4519 2.217429 GTGGTTTTGTCACGGCAAAT 57.783 45.000 0.00 0.00 38.05 2.32
3894 4520 1.857837 GTGGTTTTGTCACGGCAAATG 59.142 47.619 0.00 0.00 38.05 2.32
3895 4521 1.478510 TGGTTTTGTCACGGCAAATGT 59.521 42.857 0.00 0.00 38.05 2.71
3896 4522 2.124122 GGTTTTGTCACGGCAAATGTC 58.876 47.619 0.00 0.00 38.05 3.06
3897 4523 2.124122 GTTTTGTCACGGCAAATGTCC 58.876 47.619 0.00 0.00 38.05 4.02
3898 4524 1.686355 TTTGTCACGGCAAATGTCCT 58.314 45.000 0.00 0.00 33.91 3.85
3899 4525 2.552599 TTGTCACGGCAAATGTCCTA 57.447 45.000 0.00 0.00 0.00 2.94
3900 4526 2.093306 TGTCACGGCAAATGTCCTAG 57.907 50.000 0.00 0.00 0.00 3.02
3901 4527 1.346395 TGTCACGGCAAATGTCCTAGT 59.654 47.619 0.00 0.00 0.00 2.57
3902 4528 1.732259 GTCACGGCAAATGTCCTAGTG 59.268 52.381 0.00 0.00 0.00 2.74
3903 4529 1.346395 TCACGGCAAATGTCCTAGTGT 59.654 47.619 0.00 0.00 0.00 3.55
3904 4530 1.464608 CACGGCAAATGTCCTAGTGTG 59.535 52.381 0.00 0.00 0.00 3.82
3905 4531 1.346395 ACGGCAAATGTCCTAGTGTGA 59.654 47.619 0.00 0.00 0.00 3.58
3906 4532 2.002586 CGGCAAATGTCCTAGTGTGAG 58.997 52.381 0.00 0.00 0.00 3.51
3907 4533 2.359900 GGCAAATGTCCTAGTGTGAGG 58.640 52.381 0.00 0.00 38.03 3.86
3908 4534 2.027192 GGCAAATGTCCTAGTGTGAGGA 60.027 50.000 0.00 0.00 43.67 3.71
3918 4544 5.766590 TCCTAGTGTGAGGACTTATCATGA 58.233 41.667 0.00 0.00 40.89 3.07
3919 4545 5.830457 TCCTAGTGTGAGGACTTATCATGAG 59.170 44.000 0.09 0.00 40.89 2.90
3920 4546 5.010516 CCTAGTGTGAGGACTTATCATGAGG 59.989 48.000 0.09 0.00 39.15 3.86
3921 4547 3.133721 AGTGTGAGGACTTATCATGAGGC 59.866 47.826 0.09 0.00 0.00 4.70
3922 4548 2.435805 TGTGAGGACTTATCATGAGGCC 59.564 50.000 0.09 0.00 43.05 5.19
3923 4549 2.435805 GTGAGGACTTATCATGAGGCCA 59.564 50.000 3.66 0.00 45.30 5.36
3924 4550 3.072184 GTGAGGACTTATCATGAGGCCAT 59.928 47.826 3.66 0.00 45.30 4.40
3925 4551 3.326006 TGAGGACTTATCATGAGGCCATC 59.674 47.826 3.66 0.00 45.30 3.51
3926 4552 2.301296 AGGACTTATCATGAGGCCATCG 59.699 50.000 3.66 0.00 45.30 3.84
3927 4553 2.072298 GACTTATCATGAGGCCATCGC 58.928 52.381 5.01 0.00 0.00 4.58
3928 4554 1.417517 ACTTATCATGAGGCCATCGCA 59.582 47.619 5.01 0.00 36.38 5.10
3929 4555 2.158769 ACTTATCATGAGGCCATCGCAA 60.159 45.455 5.01 0.00 36.38 4.85
3930 4556 1.882912 TATCATGAGGCCATCGCAAC 58.117 50.000 5.01 0.00 36.38 4.17
3931 4557 0.182061 ATCATGAGGCCATCGCAACT 59.818 50.000 5.01 0.00 36.38 3.16
3932 4558 0.829990 TCATGAGGCCATCGCAACTA 59.170 50.000 5.01 0.00 36.38 2.24
3933 4559 1.209261 TCATGAGGCCATCGCAACTAA 59.791 47.619 5.01 0.00 36.38 2.24
3934 4560 1.600957 CATGAGGCCATCGCAACTAAG 59.399 52.381 5.01 0.00 36.38 2.18
3935 4561 0.107703 TGAGGCCATCGCAACTAAGG 60.108 55.000 5.01 0.00 36.38 2.69
3936 4562 0.815615 GAGGCCATCGCAACTAAGGG 60.816 60.000 5.01 0.00 36.38 3.95
3937 4563 2.481471 GGCCATCGCAACTAAGGGC 61.481 63.158 0.00 0.00 40.63 5.19
3938 4564 2.481471 GCCATCGCAACTAAGGGCC 61.481 63.158 0.00 0.00 35.42 5.80
3939 4565 1.224592 CCATCGCAACTAAGGGCCT 59.775 57.895 0.00 0.00 0.00 5.19
3940 4566 1.097547 CCATCGCAACTAAGGGCCTG 61.098 60.000 6.92 0.00 0.00 4.85
3941 4567 0.392998 CATCGCAACTAAGGGCCTGT 60.393 55.000 6.92 0.00 0.00 4.00
3942 4568 0.328258 ATCGCAACTAAGGGCCTGTT 59.672 50.000 6.92 4.85 0.00 3.16
3943 4569 0.321298 TCGCAACTAAGGGCCTGTTC 60.321 55.000 6.92 1.84 0.00 3.18
3944 4570 0.321653 CGCAACTAAGGGCCTGTTCT 60.322 55.000 6.92 0.00 0.00 3.01
3945 4571 1.168714 GCAACTAAGGGCCTGTTCTG 58.831 55.000 6.92 4.03 0.00 3.02
3946 4572 1.271379 GCAACTAAGGGCCTGTTCTGA 60.271 52.381 6.92 0.00 0.00 3.27
3947 4573 2.619074 GCAACTAAGGGCCTGTTCTGAT 60.619 50.000 6.92 0.00 0.00 2.90
3948 4574 3.274288 CAACTAAGGGCCTGTTCTGATC 58.726 50.000 6.92 0.00 0.00 2.92
3949 4575 2.839228 ACTAAGGGCCTGTTCTGATCT 58.161 47.619 6.92 0.00 0.00 2.75
3950 4576 2.769095 ACTAAGGGCCTGTTCTGATCTC 59.231 50.000 6.92 0.00 0.00 2.75
3951 4577 0.915364 AAGGGCCTGTTCTGATCTCC 59.085 55.000 6.92 0.00 0.00 3.71
3952 4578 0.043940 AGGGCCTGTTCTGATCTCCT 59.956 55.000 4.50 0.00 0.00 3.69
3953 4579 0.467804 GGGCCTGTTCTGATCTCCTC 59.532 60.000 0.84 0.00 0.00 3.71
3954 4580 0.467804 GGCCTGTTCTGATCTCCTCC 59.532 60.000 0.00 0.00 0.00 4.30
3955 4581 1.198713 GCCTGTTCTGATCTCCTCCA 58.801 55.000 0.00 0.00 0.00 3.86
3956 4582 1.556911 GCCTGTTCTGATCTCCTCCAA 59.443 52.381 0.00 0.00 0.00 3.53
3957 4583 2.026822 GCCTGTTCTGATCTCCTCCAAA 60.027 50.000 0.00 0.00 0.00 3.28
3958 4584 3.604582 CCTGTTCTGATCTCCTCCAAAC 58.395 50.000 0.00 0.00 0.00 2.93
3959 4585 3.262915 CCTGTTCTGATCTCCTCCAAACT 59.737 47.826 0.00 0.00 0.00 2.66
3960 4586 4.263243 CCTGTTCTGATCTCCTCCAAACTT 60.263 45.833 0.00 0.00 0.00 2.66
3961 4587 5.310409 TGTTCTGATCTCCTCCAAACTTT 57.690 39.130 0.00 0.00 0.00 2.66
3962 4588 5.308825 TGTTCTGATCTCCTCCAAACTTTC 58.691 41.667 0.00 0.00 0.00 2.62
3963 4589 5.163205 TGTTCTGATCTCCTCCAAACTTTCA 60.163 40.000 0.00 0.00 0.00 2.69
3964 4590 5.567037 TCTGATCTCCTCCAAACTTTCAA 57.433 39.130 0.00 0.00 0.00 2.69
3965 4591 5.940617 TCTGATCTCCTCCAAACTTTCAAA 58.059 37.500 0.00 0.00 0.00 2.69
3966 4592 6.364701 TCTGATCTCCTCCAAACTTTCAAAA 58.635 36.000 0.00 0.00 0.00 2.44
3967 4593 6.263168 TCTGATCTCCTCCAAACTTTCAAAAC 59.737 38.462 0.00 0.00 0.00 2.43
3968 4594 6.129179 TGATCTCCTCCAAACTTTCAAAACT 58.871 36.000 0.00 0.00 0.00 2.66
3969 4595 6.607198 TGATCTCCTCCAAACTTTCAAAACTT 59.393 34.615 0.00 0.00 0.00 2.66
3970 4596 6.451064 TCTCCTCCAAACTTTCAAAACTTC 57.549 37.500 0.00 0.00 0.00 3.01
3971 4597 6.187682 TCTCCTCCAAACTTTCAAAACTTCT 58.812 36.000 0.00 0.00 0.00 2.85
3972 4598 6.318900 TCTCCTCCAAACTTTCAAAACTTCTC 59.681 38.462 0.00 0.00 0.00 2.87
3973 4599 5.949354 TCCTCCAAACTTTCAAAACTTCTCA 59.051 36.000 0.00 0.00 0.00 3.27
3974 4600 6.435904 TCCTCCAAACTTTCAAAACTTCTCAA 59.564 34.615 0.00 0.00 0.00 3.02
3975 4601 7.039363 TCCTCCAAACTTTCAAAACTTCTCAAA 60.039 33.333 0.00 0.00 0.00 2.69
3976 4602 7.602265 CCTCCAAACTTTCAAAACTTCTCAAAA 59.398 33.333 0.00 0.00 0.00 2.44
3977 4603 9.154847 CTCCAAACTTTCAAAACTTCTCAAAAT 57.845 29.630 0.00 0.00 0.00 1.82
3978 4604 9.150348 TCCAAACTTTCAAAACTTCTCAAAATC 57.850 29.630 0.00 0.00 0.00 2.17
3979 4605 9.154847 CCAAACTTTCAAAACTTCTCAAAATCT 57.845 29.630 0.00 0.00 0.00 2.40
3980 4606 9.962759 CAAACTTTCAAAACTTCTCAAAATCTG 57.037 29.630 0.00 0.00 0.00 2.90
3981 4607 7.761651 ACTTTCAAAACTTCTCAAAATCTGC 57.238 32.000 0.00 0.00 0.00 4.26
3982 4608 7.550712 ACTTTCAAAACTTCTCAAAATCTGCT 58.449 30.769 0.00 0.00 0.00 4.24
3983 4609 8.037166 ACTTTCAAAACTTCTCAAAATCTGCTT 58.963 29.630 0.00 0.00 0.00 3.91
3984 4610 7.992180 TTCAAAACTTCTCAAAATCTGCTTC 57.008 32.000 0.00 0.00 0.00 3.86
3985 4611 7.099266 TCAAAACTTCTCAAAATCTGCTTCA 57.901 32.000 0.00 0.00 0.00 3.02
3986 4612 7.198390 TCAAAACTTCTCAAAATCTGCTTCAG 58.802 34.615 0.00 0.00 0.00 3.02
3987 4613 6.949352 AAACTTCTCAAAATCTGCTTCAGA 57.051 33.333 0.00 0.00 44.99 3.27
3988 4614 6.949352 AACTTCTCAAAATCTGCTTCAGAA 57.051 33.333 0.27 0.00 44.04 3.02
3989 4615 6.557291 ACTTCTCAAAATCTGCTTCAGAAG 57.443 37.500 5.72 5.72 44.04 2.85
4004 4630 3.052181 GAAGCTGGCTTCGTACTCC 57.948 57.895 17.68 0.00 42.23 3.85
4005 4631 0.246635 GAAGCTGGCTTCGTACTCCA 59.753 55.000 17.68 0.00 42.23 3.86
4006 4632 0.037232 AAGCTGGCTTCGTACTCCAC 60.037 55.000 1.60 0.00 0.00 4.02
4007 4633 1.448013 GCTGGCTTCGTACTCCACC 60.448 63.158 0.00 0.00 0.00 4.61
4008 4634 1.889530 GCTGGCTTCGTACTCCACCT 61.890 60.000 0.00 0.00 0.00 4.00
4009 4635 1.471119 CTGGCTTCGTACTCCACCTA 58.529 55.000 0.00 0.00 0.00 3.08
4010 4636 1.405821 CTGGCTTCGTACTCCACCTAG 59.594 57.143 0.00 0.00 0.00 3.02
4011 4637 0.102663 GGCTTCGTACTCCACCTAGC 59.897 60.000 0.00 0.00 32.13 3.42
4012 4638 0.248539 GCTTCGTACTCCACCTAGCG 60.249 60.000 0.00 0.00 0.00 4.26
4013 4639 1.376543 CTTCGTACTCCACCTAGCGA 58.623 55.000 0.00 0.00 0.00 4.93
4014 4640 1.948145 CTTCGTACTCCACCTAGCGAT 59.052 52.381 0.00 0.00 0.00 4.58
4015 4641 1.590932 TCGTACTCCACCTAGCGATC 58.409 55.000 0.00 0.00 0.00 3.69
4016 4642 1.134310 TCGTACTCCACCTAGCGATCA 60.134 52.381 0.00 0.00 0.00 2.92
4017 4643 1.264557 CGTACTCCACCTAGCGATCAG 59.735 57.143 0.00 0.00 0.00 2.90
4040 4666 4.507794 CGTTTTGCACGTGGTAGC 57.492 55.556 18.88 2.69 44.49 3.58
4041 4667 1.938861 CGTTTTGCACGTGGTAGCT 59.061 52.632 18.88 0.00 44.49 3.32
4042 4668 0.306533 CGTTTTGCACGTGGTAGCTT 59.693 50.000 18.88 0.00 44.49 3.74
4043 4669 1.659211 CGTTTTGCACGTGGTAGCTTC 60.659 52.381 18.88 0.00 44.49 3.86
4044 4670 1.602377 GTTTTGCACGTGGTAGCTTCT 59.398 47.619 18.88 0.00 0.00 2.85
4045 4671 1.508632 TTTGCACGTGGTAGCTTCTC 58.491 50.000 18.88 0.00 0.00 2.87
4046 4672 0.320421 TTGCACGTGGTAGCTTCTCC 60.320 55.000 18.88 0.00 0.00 3.71
4047 4673 1.448013 GCACGTGGTAGCTTCTCCC 60.448 63.158 18.88 0.00 0.00 4.30
4048 4674 1.218316 CACGTGGTAGCTTCTCCCC 59.782 63.158 7.95 0.00 0.00 4.81
4049 4675 2.348888 ACGTGGTAGCTTCTCCCCG 61.349 63.158 0.00 0.00 0.00 5.73
4050 4676 2.187163 GTGGTAGCTTCTCCCCGC 59.813 66.667 0.00 0.00 0.00 6.13
4051 4677 3.458163 TGGTAGCTTCTCCCCGCG 61.458 66.667 0.00 0.00 0.00 6.46
4052 4678 3.145551 GGTAGCTTCTCCCCGCGA 61.146 66.667 8.23 0.00 0.00 5.87
4053 4679 2.499827 GGTAGCTTCTCCCCGCGAT 61.500 63.158 8.23 0.00 0.00 4.58
4054 4680 1.442148 GTAGCTTCTCCCCGCGATT 59.558 57.895 8.23 0.00 0.00 3.34
4055 4681 0.179081 GTAGCTTCTCCCCGCGATTT 60.179 55.000 8.23 0.00 0.00 2.17
4056 4682 0.179084 TAGCTTCTCCCCGCGATTTG 60.179 55.000 8.23 0.00 0.00 2.32
4057 4683 2.472909 GCTTCTCCCCGCGATTTGG 61.473 63.158 8.23 0.00 0.00 3.28
4058 4684 2.437716 TTCTCCCCGCGATTTGGC 60.438 61.111 8.23 0.00 0.00 4.52
4059 4685 3.987954 TTCTCCCCGCGATTTGGCC 62.988 63.158 8.23 0.00 0.00 5.36
4065 4691 4.174129 CGCGATTTGGCCCGGTTC 62.174 66.667 0.00 0.00 0.00 3.62
4066 4692 2.750237 GCGATTTGGCCCGGTTCT 60.750 61.111 0.00 0.00 0.00 3.01
4067 4693 3.051392 GCGATTTGGCCCGGTTCTG 62.051 63.158 0.00 0.00 0.00 3.02
4068 4694 2.885113 GATTTGGCCCGGTTCTGC 59.115 61.111 0.00 0.00 0.00 4.26
4069 4695 1.976474 GATTTGGCCCGGTTCTGCA 60.976 57.895 0.00 0.00 0.00 4.41
4070 4696 2.212900 GATTTGGCCCGGTTCTGCAC 62.213 60.000 0.00 0.00 0.00 4.57
4075 4701 4.619227 CCCGGTTCTGCACGTGGT 62.619 66.667 18.88 0.00 0.00 4.16
4076 4702 2.340809 CCGGTTCTGCACGTGGTA 59.659 61.111 18.88 0.00 0.00 3.25
4077 4703 1.736645 CCGGTTCTGCACGTGGTAG 60.737 63.158 18.88 7.19 0.00 3.18
4078 4704 2.380410 CGGTTCTGCACGTGGTAGC 61.380 63.158 18.88 2.69 0.00 3.58
4079 4705 1.004918 GGTTCTGCACGTGGTAGCT 60.005 57.895 18.88 0.00 0.00 3.32
4080 4706 0.602905 GGTTCTGCACGTGGTAGCTT 60.603 55.000 18.88 0.00 0.00 3.74
4081 4707 0.790814 GTTCTGCACGTGGTAGCTTC 59.209 55.000 18.88 0.00 0.00 3.86
4082 4708 0.679505 TTCTGCACGTGGTAGCTTCT 59.320 50.000 18.88 0.00 0.00 2.85
4083 4709 0.243907 TCTGCACGTGGTAGCTTCTC 59.756 55.000 18.88 0.00 0.00 2.87
4084 4710 0.737715 CTGCACGTGGTAGCTTCTCC 60.738 60.000 18.88 0.00 0.00 3.71
4085 4711 1.448013 GCACGTGGTAGCTTCTCCC 60.448 63.158 18.88 0.00 0.00 4.30
4086 4712 1.218316 CACGTGGTAGCTTCTCCCC 59.782 63.158 7.95 0.00 0.00 4.81
4087 4713 2.348888 ACGTGGTAGCTTCTCCCCG 61.349 63.158 0.00 0.00 0.00 5.73
4088 4714 2.187163 GTGGTAGCTTCTCCCCGC 59.813 66.667 0.00 0.00 0.00 6.13
4089 4715 3.458163 TGGTAGCTTCTCCCCGCG 61.458 66.667 0.00 0.00 0.00 6.46
4090 4716 3.145551 GGTAGCTTCTCCCCGCGA 61.146 66.667 8.23 0.00 0.00 5.87
4091 4717 2.499827 GGTAGCTTCTCCCCGCGAT 61.500 63.158 8.23 0.00 0.00 4.58
4092 4718 1.442148 GTAGCTTCTCCCCGCGATT 59.558 57.895 8.23 0.00 0.00 3.34
4093 4719 0.179081 GTAGCTTCTCCCCGCGATTT 60.179 55.000 8.23 0.00 0.00 2.17
4094 4720 0.179084 TAGCTTCTCCCCGCGATTTG 60.179 55.000 8.23 0.00 0.00 2.32
4095 4721 2.472909 GCTTCTCCCCGCGATTTGG 61.473 63.158 8.23 0.00 0.00 3.28
4096 4722 2.437716 TTCTCCCCGCGATTTGGC 60.438 61.111 8.23 0.00 0.00 4.52
4097 4723 3.987954 TTCTCCCCGCGATTTGGCC 62.988 63.158 8.23 0.00 0.00 5.36
4103 4729 4.174129 CGCGATTTGGCCCGGTTC 62.174 66.667 0.00 0.00 0.00 3.62
4104 4730 2.750237 GCGATTTGGCCCGGTTCT 60.750 61.111 0.00 0.00 0.00 3.01
4105 4731 3.051392 GCGATTTGGCCCGGTTCTG 62.051 63.158 0.00 0.00 0.00 3.02
4106 4732 2.885113 GATTTGGCCCGGTTCTGC 59.115 61.111 0.00 0.00 0.00 4.26
4107 4733 1.976474 GATTTGGCCCGGTTCTGCA 60.976 57.895 0.00 0.00 0.00 4.41
4108 4734 2.212900 GATTTGGCCCGGTTCTGCAC 62.213 60.000 0.00 0.00 0.00 4.57
4113 4739 4.619227 CCCGGTTCTGCACGTGGT 62.619 66.667 18.88 0.00 0.00 4.16
4114 4740 2.340809 CCGGTTCTGCACGTGGTA 59.659 61.111 18.88 0.00 0.00 3.25
4115 4741 1.736645 CCGGTTCTGCACGTGGTAG 60.737 63.158 18.88 7.19 0.00 3.18
4116 4742 2.380410 CGGTTCTGCACGTGGTAGC 61.380 63.158 18.88 2.69 0.00 3.58
4117 4743 1.004918 GGTTCTGCACGTGGTAGCT 60.005 57.895 18.88 0.00 0.00 3.32
4118 4744 0.602905 GGTTCTGCACGTGGTAGCTT 60.603 55.000 18.88 0.00 0.00 3.74
4119 4745 0.790814 GTTCTGCACGTGGTAGCTTC 59.209 55.000 18.88 0.00 0.00 3.86
4120 4746 0.679505 TTCTGCACGTGGTAGCTTCT 59.320 50.000 18.88 0.00 0.00 2.85
4121 4747 0.243907 TCTGCACGTGGTAGCTTCTC 59.756 55.000 18.88 0.00 0.00 2.87
4122 4748 0.737715 CTGCACGTGGTAGCTTCTCC 60.738 60.000 18.88 0.00 0.00 3.71
4123 4749 1.448013 GCACGTGGTAGCTTCTCCC 60.448 63.158 18.88 0.00 0.00 4.30
4124 4750 1.218316 CACGTGGTAGCTTCTCCCC 59.782 63.158 7.95 0.00 0.00 4.81
4125 4751 2.348888 ACGTGGTAGCTTCTCCCCG 61.349 63.158 0.00 0.00 0.00 5.73
4126 4752 2.187163 GTGGTAGCTTCTCCCCGC 59.813 66.667 0.00 0.00 0.00 6.13
4127 4753 3.458163 TGGTAGCTTCTCCCCGCG 61.458 66.667 0.00 0.00 0.00 6.46
4128 4754 3.145551 GGTAGCTTCTCCCCGCGA 61.146 66.667 8.23 0.00 0.00 5.87
4129 4755 2.499827 GGTAGCTTCTCCCCGCGAT 61.500 63.158 8.23 0.00 0.00 4.58
4130 4756 1.442148 GTAGCTTCTCCCCGCGATT 59.558 57.895 8.23 0.00 0.00 3.34
4131 4757 0.179081 GTAGCTTCTCCCCGCGATTT 60.179 55.000 8.23 0.00 0.00 2.17
4132 4758 0.179084 TAGCTTCTCCCCGCGATTTG 60.179 55.000 8.23 0.00 0.00 2.32
4133 4759 2.472909 GCTTCTCCCCGCGATTTGG 61.473 63.158 8.23 0.00 0.00 3.28
4134 4760 2.437716 TTCTCCCCGCGATTTGGC 60.438 61.111 8.23 0.00 0.00 4.52
4135 4761 3.987954 TTCTCCCCGCGATTTGGCC 62.988 63.158 8.23 0.00 0.00 5.36
4153 4779 4.277593 CGCTCGGGAGGCTGCTAG 62.278 72.222 5.84 5.30 0.00 3.42
4154 4780 4.600576 GCTCGGGAGGCTGCTAGC 62.601 72.222 8.10 8.10 41.46 3.42
4163 4789 3.595819 GCTGCTAGCCTTGTTGGG 58.404 61.111 13.29 0.00 34.48 4.12
4174 4800 2.162681 CCTTGTTGGGCTCTAGTTTGG 58.837 52.381 0.00 0.00 0.00 3.28
4175 4801 2.162681 CTTGTTGGGCTCTAGTTTGGG 58.837 52.381 0.00 0.00 0.00 4.12
4176 4802 0.251165 TGTTGGGCTCTAGTTTGGGC 60.251 55.000 0.00 0.00 0.00 5.36
4177 4803 0.965866 GTTGGGCTCTAGTTTGGGCC 60.966 60.000 0.00 0.00 44.50 5.80
4178 4804 3.087065 GGGCTCTAGTTTGGGCCA 58.913 61.111 0.00 0.00 45.68 5.36
4179 4805 1.615262 GGGCTCTAGTTTGGGCCAT 59.385 57.895 7.26 0.00 45.68 4.40
4180 4806 0.033109 GGGCTCTAGTTTGGGCCATT 60.033 55.000 7.26 0.00 45.68 3.16
4181 4807 1.106285 GGCTCTAGTTTGGGCCATTG 58.894 55.000 7.26 0.00 43.59 2.82
4182 4808 1.106285 GCTCTAGTTTGGGCCATTGG 58.894 55.000 7.26 0.00 0.00 3.16
4183 4809 1.340991 GCTCTAGTTTGGGCCATTGGA 60.341 52.381 7.26 2.99 0.00 3.53
4184 4810 2.648059 CTCTAGTTTGGGCCATTGGAG 58.352 52.381 7.26 9.50 0.00 3.86
4185 4811 1.284785 TCTAGTTTGGGCCATTGGAGG 59.715 52.381 7.26 0.00 0.00 4.30
4193 4819 2.441532 CCATTGGAGGCAGCCCAG 60.442 66.667 8.22 0.00 34.77 4.45
4194 4820 2.357836 CATTGGAGGCAGCCCAGT 59.642 61.111 8.22 0.00 34.77 4.00
4195 4821 1.304713 CATTGGAGGCAGCCCAGTT 60.305 57.895 8.22 0.00 34.77 3.16
4196 4822 0.901580 CATTGGAGGCAGCCCAGTTT 60.902 55.000 8.22 0.00 34.77 2.66
4197 4823 0.901580 ATTGGAGGCAGCCCAGTTTG 60.902 55.000 8.22 0.00 34.77 2.93
4198 4824 2.677875 GGAGGCAGCCCAGTTTGG 60.678 66.667 8.22 0.00 37.25 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 124 1.616872 GCGGCAAAACAAAGCGGATG 61.617 55.000 0.00 0.00 33.49 3.51
309 388 3.347590 GGGGGAGGGGGAAAGTGG 61.348 72.222 0.00 0.00 0.00 4.00
502 910 3.567585 GGAAGAGAAGCAAGAAAGCAAGT 59.432 43.478 0.00 0.00 36.85 3.16
505 913 2.508526 GGGAAGAGAAGCAAGAAAGCA 58.491 47.619 0.00 0.00 36.85 3.91
506 914 1.815613 GGGGAAGAGAAGCAAGAAAGC 59.184 52.381 0.00 0.00 0.00 3.51
528 937 1.595109 CATGGCTAGCCGCGATCAA 60.595 57.895 28.28 9.81 40.44 2.57
578 993 1.006571 GGACGGACGAACAGCTGAA 60.007 57.895 23.35 0.00 0.00 3.02
579 994 2.649034 GGACGGACGAACAGCTGA 59.351 61.111 23.35 0.00 0.00 4.26
685 1100 1.133363 TTCCAGGGGTGACGAAAGAA 58.867 50.000 0.00 0.00 0.00 2.52
703 1118 1.070134 GCGCCTTTTCCTTCCCTTTTT 59.930 47.619 0.00 0.00 0.00 1.94
711 1126 1.632589 AAAGATGGCGCCTTTTCCTT 58.367 45.000 29.70 17.44 30.32 3.36
749 1164 1.604378 GAGGATGGTGTGTCCCTGG 59.396 63.158 0.00 0.00 36.36 4.45
750 1165 1.604378 GGAGGATGGTGTGTCCCTG 59.396 63.158 0.00 0.00 36.36 4.45
751 1166 1.616628 GGGAGGATGGTGTGTCCCT 60.617 63.158 0.00 0.00 44.80 4.20
752 1167 2.998949 GGGAGGATGGTGTGTCCC 59.001 66.667 0.00 0.00 42.07 4.46
765 1181 2.415010 CGTGAGCGATCAGGGGAG 59.585 66.667 15.20 0.00 41.33 4.30
791 1207 2.553086 GCTCAATCTCTGAAGCTGGAG 58.447 52.381 0.00 0.00 32.17 3.86
811 1227 1.276421 TCGGGAAGAAGAAGAGCTTGG 59.724 52.381 0.00 0.00 36.83 3.61
812 1228 2.615869 CTCGGGAAGAAGAAGAGCTTG 58.384 52.381 0.00 0.00 36.83 4.01
834 1250 0.694771 TGCACCAGAGCCTGAATTCT 59.305 50.000 7.05 0.00 32.44 2.40
842 1258 4.643387 AACCGGTGCACCAGAGCC 62.643 66.667 34.16 7.76 35.14 4.70
883 1308 1.379977 TGTCGGCGAGAAGATCCCT 60.380 57.895 11.20 0.00 0.00 4.20
905 1348 1.524848 GAGACCGTCTGACTCTGTCA 58.475 55.000 5.57 0.37 40.50 3.58
936 1379 1.915078 GCTTAAGCAGAGGCAGGGGA 61.915 60.000 22.59 0.00 44.61 4.81
1496 1954 4.717629 TGTCTGCTTCGGCGTCGG 62.718 66.667 10.62 0.00 45.37 4.79
1599 2057 1.446272 GGTCTTCTCGGCCTTCACG 60.446 63.158 0.00 0.00 0.00 4.35
1625 2083 3.241530 TCTCCTTGTGCGTGGCCT 61.242 61.111 3.32 0.00 0.00 5.19
1747 2205 4.162690 CTTCCGCTTCCTCCCCGG 62.163 72.222 0.00 0.00 43.21 5.73
1750 2208 4.491409 GCCCTTCCGCTTCCTCCC 62.491 72.222 0.00 0.00 0.00 4.30
1751 2209 4.491409 GGCCCTTCCGCTTCCTCC 62.491 72.222 0.00 0.00 0.00 4.30
1755 2213 3.689002 CTCAGGGCCCTTCCGCTTC 62.689 68.421 26.10 0.00 34.94 3.86
1759 2217 4.479993 CAGCTCAGGGCCCTTCCG 62.480 72.222 26.10 12.24 43.05 4.30
1765 2223 4.459089 GACGTCCAGCTCAGGGCC 62.459 72.222 3.51 0.00 43.05 5.80
1770 2228 4.103103 CTCGCGACGTCCAGCTCA 62.103 66.667 3.71 0.00 0.00 4.26
1889 2347 3.157252 TCAGCTCCATCTCGCCCC 61.157 66.667 0.00 0.00 0.00 5.80
2045 2506 4.794334 TGGTAAGCTGGTTTTAAGTTGGA 58.206 39.130 0.00 0.00 0.00 3.53
2054 2515 4.459337 GCAATCTTACTGGTAAGCTGGTTT 59.541 41.667 13.76 2.80 41.63 3.27
2055 2516 4.010349 GCAATCTTACTGGTAAGCTGGTT 58.990 43.478 13.76 0.00 41.63 3.67
2056 2517 3.264450 AGCAATCTTACTGGTAAGCTGGT 59.736 43.478 13.76 14.47 41.63 4.00
2057 2518 3.624861 CAGCAATCTTACTGGTAAGCTGG 59.375 47.826 17.25 8.56 41.63 4.85
2058 2519 4.256920 ACAGCAATCTTACTGGTAAGCTG 58.743 43.478 20.60 20.60 41.63 4.24
2059 2520 4.559862 ACAGCAATCTTACTGGTAAGCT 57.440 40.909 13.76 7.21 41.63 3.74
2060 2521 4.695455 TGAACAGCAATCTTACTGGTAAGC 59.305 41.667 13.76 5.34 41.63 3.09
2061 2522 6.992063 ATGAACAGCAATCTTACTGGTAAG 57.008 37.500 12.71 12.71 42.86 2.34
2062 2523 9.109393 GAATATGAACAGCAATCTTACTGGTAA 57.891 33.333 0.00 0.00 38.25 2.85
2063 2524 8.264347 TGAATATGAACAGCAATCTTACTGGTA 58.736 33.333 0.00 0.00 38.25 3.25
2064 2525 7.112122 TGAATATGAACAGCAATCTTACTGGT 58.888 34.615 0.00 0.00 38.25 4.00
2101 2581 4.036734 CACACCATACACCATTTAGGATGC 59.963 45.833 0.00 0.00 41.22 3.91
2112 2592 3.391296 ACCCATATCTCACACCATACACC 59.609 47.826 0.00 0.00 0.00 4.16
2126 2606 4.085357 TGCACTTCCACATACCCATATC 57.915 45.455 0.00 0.00 0.00 1.63
2127 2607 4.729552 ATGCACTTCCACATACCCATAT 57.270 40.909 0.00 0.00 0.00 1.78
2133 2613 2.097466 CCGGAAATGCACTTCCACATAC 59.903 50.000 25.36 0.00 44.52 2.39
2139 2619 0.171231 GAAGCCGGAAATGCACTTCC 59.829 55.000 17.00 17.00 41.40 3.46
2206 2686 7.068839 CAGGACTAGATAGAAAAGTAGCTCCAA 59.931 40.741 0.00 0.00 0.00 3.53
2214 2694 8.826765 TGATTTTCCAGGACTAGATAGAAAAGT 58.173 33.333 0.00 0.00 36.84 2.66
2329 2815 4.923871 AGTATACGTCTGAAGCAAACACTG 59.076 41.667 0.00 0.00 0.00 3.66
2345 2831 7.751047 TGAAAAGCTGCTTTAGTAGTATACG 57.249 36.000 26.25 0.00 38.58 3.06
2349 2835 7.878127 ACAGAATGAAAAGCTGCTTTAGTAGTA 59.122 33.333 26.25 10.67 39.69 1.82
2350 2836 6.712547 ACAGAATGAAAAGCTGCTTTAGTAGT 59.287 34.615 26.25 15.04 39.69 2.73
2351 2837 7.138692 ACAGAATGAAAAGCTGCTTTAGTAG 57.861 36.000 26.25 14.96 39.69 2.57
2377 2863 6.150641 TGTCTGAACCATCACAGTACTAGTAC 59.849 42.308 23.03 23.03 35.84 2.73
2485 2977 2.285827 ACAGCGCTGTAGAATGAGAC 57.714 50.000 40.15 0.00 42.90 3.36
2518 3010 2.046285 GGGACAACATTCAGCCCCG 61.046 63.158 0.00 0.00 32.50 5.73
2520 3012 2.046285 CGGGGACAACATTCAGCCC 61.046 63.158 0.00 0.00 38.08 5.19
2557 3050 6.546034 CCAATAAAATAACCCGAATGGAGTCT 59.454 38.462 0.00 0.00 37.49 3.24
2558 3051 6.734871 GCCAATAAAATAACCCGAATGGAGTC 60.735 42.308 0.00 0.00 37.49 3.36
2559 3052 5.068591 GCCAATAAAATAACCCGAATGGAGT 59.931 40.000 0.00 0.00 37.49 3.85
2560 3053 5.068460 TGCCAATAAAATAACCCGAATGGAG 59.932 40.000 0.00 0.00 37.49 3.86
2594 3087 6.621316 TTAGTTCTAACATGCGGTTTTTCA 57.379 33.333 0.00 0.00 40.96 2.69
2631 3124 4.319139 AGCAGAGCATGTATGACACTAG 57.681 45.455 0.00 0.00 0.00 2.57
2641 3134 1.761784 CCCTCTTCTAGCAGAGCATGT 59.238 52.381 13.37 0.00 39.33 3.21
2642 3135 1.761784 ACCCTCTTCTAGCAGAGCATG 59.238 52.381 13.37 6.99 39.33 4.06
2643 3136 1.761784 CACCCTCTTCTAGCAGAGCAT 59.238 52.381 13.37 1.40 39.33 3.79
2644 3137 1.189752 CACCCTCTTCTAGCAGAGCA 58.810 55.000 13.37 0.00 39.33 4.26
2645 3138 1.190643 ACACCCTCTTCTAGCAGAGC 58.809 55.000 13.37 0.00 39.33 4.09
2713 3218 4.253685 GCTGCCTACAAGTTAGAACATCA 58.746 43.478 0.00 0.00 0.00 3.07
2749 3255 6.635641 CAGAGCATGCATTATATGTCAACAAC 59.364 38.462 21.98 0.00 0.00 3.32
2835 3424 9.612620 CGTTTAATGAGGAGATTATATTTTGGC 57.387 33.333 0.00 0.00 0.00 4.52
2860 3449 2.329690 CGCGAGACCTCTGATCCG 59.670 66.667 0.00 0.00 0.00 4.18
2953 3559 1.797025 AAGTCGAAGCAACACCTAGC 58.203 50.000 0.00 0.00 0.00 3.42
3015 3621 9.736023 ATAAGATAAAATGAAAATCCGTCTTGC 57.264 29.630 0.00 0.00 0.00 4.01
3050 3656 1.204704 TCAGCAGACCGTACAAGATGG 59.795 52.381 0.00 0.00 40.52 3.51
3165 3783 2.959707 TGAAACCCGTAAGCCAAATTGT 59.040 40.909 0.00 0.00 0.00 2.71
3178 3796 0.889186 CACCCTGAACCTGAAACCCG 60.889 60.000 0.00 0.00 0.00 5.28
3223 3841 1.289160 CCAGGGGAGGAGAATCACAA 58.711 55.000 0.00 0.00 36.25 3.33
3245 3863 2.060326 TCTGTTTAGAACTCGTGCGG 57.940 50.000 0.00 0.00 0.00 5.69
3251 3869 2.289506 ACCGGCCTTCTGTTTAGAACTC 60.290 50.000 0.00 0.00 37.99 3.01
3252 3870 1.697982 ACCGGCCTTCTGTTTAGAACT 59.302 47.619 0.00 0.00 37.99 3.01
3263 3881 1.591863 GAGTGCGATACCGGCCTTC 60.592 63.158 0.00 0.00 36.06 3.46
3319 3938 1.699083 TGCCTTCACTCTCATGGTGAA 59.301 47.619 13.27 13.27 46.95 3.18
3355 3974 3.968724 GCTTCCGTTATTGCATTTCGATC 59.031 43.478 0.00 0.00 0.00 3.69
3363 3982 1.164411 CTGGTGCTTCCGTTATTGCA 58.836 50.000 0.00 0.00 39.52 4.08
3378 3997 2.846532 CTGGAAAGGGGCACTGGT 59.153 61.111 0.00 0.00 0.00 4.00
3379 3998 2.677875 GCTGGAAAGGGGCACTGG 60.678 66.667 0.00 0.00 0.00 4.00
3381 4000 2.437897 CTGCTGGAAAGGGGCACT 59.562 61.111 0.00 0.00 32.33 4.40
3450 4069 5.129634 TCAGTAGGAATGCAAGTTGACAAA 58.870 37.500 7.16 0.00 0.00 2.83
3483 4102 4.855388 CAGCATCTTACAAATGTTGTCAGC 59.145 41.667 0.00 0.00 44.12 4.26
3492 4111 5.564550 AGAGAACCACAGCATCTTACAAAT 58.435 37.500 0.00 0.00 0.00 2.32
3493 4112 4.973168 AGAGAACCACAGCATCTTACAAA 58.027 39.130 0.00 0.00 0.00 2.83
3546 4172 4.574421 TCAACAGTCACACAAACACCATAG 59.426 41.667 0.00 0.00 0.00 2.23
3701 4327 6.538742 TCGCCTCCTTATATCTGAAAAGTTTG 59.461 38.462 0.00 0.00 0.00 2.93
3743 4369 1.052617 TTTGGCAAAAAGGGTAGCCC 58.947 50.000 10.83 0.00 46.45 5.19
3763 4389 9.420118 ACACTGGCAGATGGATTTATTTATTTA 57.580 29.630 23.66 0.00 0.00 1.40
3770 4396 4.446311 GGGTACACTGGCAGATGGATTTAT 60.446 45.833 23.66 1.73 0.00 1.40
3771 4397 3.118038 GGGTACACTGGCAGATGGATTTA 60.118 47.826 23.66 1.83 0.00 1.40
3772 4398 2.357154 GGGTACACTGGCAGATGGATTT 60.357 50.000 23.66 2.75 0.00 2.17
3773 4399 1.212935 GGGTACACTGGCAGATGGATT 59.787 52.381 23.66 3.09 0.00 3.01
3795 4421 3.181490 GCTAAAGTATTGGGGGCTTTTCG 60.181 47.826 0.00 0.00 34.69 3.46
3822 4448 6.204688 TCTGAGTTAACCACATGTTCATGTTC 59.795 38.462 14.65 9.31 38.42 3.18
3830 4456 3.861840 CCGATCTGAGTTAACCACATGT 58.138 45.455 0.88 0.00 0.00 3.21
3836 4462 1.066430 TGGTGCCGATCTGAGTTAACC 60.066 52.381 0.88 0.00 0.00 2.85
3837 4463 2.000447 GTGGTGCCGATCTGAGTTAAC 59.000 52.381 0.00 0.00 0.00 2.01
3838 4464 1.066430 GGTGGTGCCGATCTGAGTTAA 60.066 52.381 0.00 0.00 0.00 2.01
3839 4465 0.535335 GGTGGTGCCGATCTGAGTTA 59.465 55.000 0.00 0.00 0.00 2.24
3840 4466 1.296715 GGTGGTGCCGATCTGAGTT 59.703 57.895 0.00 0.00 0.00 3.01
3841 4467 2.660064 GGGTGGTGCCGATCTGAGT 61.660 63.158 0.00 0.00 38.44 3.41
3842 4468 2.187946 GGGTGGTGCCGATCTGAG 59.812 66.667 0.00 0.00 38.44 3.35
3843 4469 3.770040 CGGGTGGTGCCGATCTGA 61.770 66.667 0.00 0.00 38.44 3.27
3855 4481 4.657824 ACACGTTCCTCGCGGGTG 62.658 66.667 4.71 7.44 44.88 4.61
3858 4484 4.695231 ACGACACGTTCCTCGCGG 62.695 66.667 6.13 0.00 44.19 6.46
3859 4485 3.458579 CACGACACGTTCCTCGCG 61.459 66.667 0.00 0.00 44.19 5.87
3860 4486 3.103911 CCACGACACGTTCCTCGC 61.104 66.667 6.90 0.00 44.19 5.03
3861 4487 0.872881 AAACCACGACACGTTCCTCG 60.873 55.000 5.68 5.68 38.32 4.63
3862 4488 1.004292 CAAAACCACGACACGTTCCTC 60.004 52.381 0.00 0.00 38.32 3.71
3863 4489 1.011333 CAAAACCACGACACGTTCCT 58.989 50.000 0.00 0.00 38.32 3.36
3864 4490 0.728542 ACAAAACCACGACACGTTCC 59.271 50.000 0.00 0.00 38.32 3.62
3865 4491 1.394227 TGACAAAACCACGACACGTTC 59.606 47.619 0.00 0.00 38.32 3.95
3866 4492 1.129064 GTGACAAAACCACGACACGTT 59.871 47.619 0.00 0.00 38.32 3.99
3867 4493 0.722848 GTGACAAAACCACGACACGT 59.277 50.000 0.00 0.00 42.36 4.49
3868 4494 3.502306 GTGACAAAACCACGACACG 57.498 52.632 0.00 0.00 0.00 4.49
3874 4500 1.857837 CATTTGCCGTGACAAAACCAC 59.142 47.619 0.00 0.00 42.45 4.16
3875 4501 1.478510 ACATTTGCCGTGACAAAACCA 59.521 42.857 0.00 0.00 42.45 3.67
3876 4502 2.124122 GACATTTGCCGTGACAAAACC 58.876 47.619 0.00 0.00 42.45 3.27
3877 4503 2.124122 GGACATTTGCCGTGACAAAAC 58.876 47.619 0.00 0.00 42.45 2.43
3878 4504 2.028130 AGGACATTTGCCGTGACAAAA 58.972 42.857 0.00 0.00 42.45 2.44
3879 4505 1.686355 AGGACATTTGCCGTGACAAA 58.314 45.000 0.00 0.00 43.27 2.83
3880 4506 2.224426 ACTAGGACATTTGCCGTGACAA 60.224 45.455 0.00 0.00 0.00 3.18
3881 4507 1.346395 ACTAGGACATTTGCCGTGACA 59.654 47.619 0.00 0.00 0.00 3.58
3882 4508 1.732259 CACTAGGACATTTGCCGTGAC 59.268 52.381 0.00 0.00 0.00 3.67
3883 4509 1.346395 ACACTAGGACATTTGCCGTGA 59.654 47.619 0.00 0.00 0.00 4.35
3884 4510 1.464608 CACACTAGGACATTTGCCGTG 59.535 52.381 0.00 0.00 0.00 4.94
3885 4511 1.346395 TCACACTAGGACATTTGCCGT 59.654 47.619 0.00 0.00 0.00 5.68
3886 4512 2.002586 CTCACACTAGGACATTTGCCG 58.997 52.381 0.00 0.00 0.00 5.69
3887 4513 2.027192 TCCTCACACTAGGACATTTGCC 60.027 50.000 0.00 0.00 40.86 4.52
3888 4514 3.334583 TCCTCACACTAGGACATTTGC 57.665 47.619 0.00 0.00 40.86 3.68
3895 4521 5.766590 TCATGATAAGTCCTCACACTAGGA 58.233 41.667 0.00 0.00 43.58 2.94
3896 4522 5.010516 CCTCATGATAAGTCCTCACACTAGG 59.989 48.000 0.00 0.00 38.06 3.02
3897 4523 5.508825 GCCTCATGATAAGTCCTCACACTAG 60.509 48.000 0.00 0.00 0.00 2.57
3898 4524 4.342378 GCCTCATGATAAGTCCTCACACTA 59.658 45.833 0.00 0.00 0.00 2.74
3899 4525 3.133721 GCCTCATGATAAGTCCTCACACT 59.866 47.826 0.00 0.00 0.00 3.55
3900 4526 3.462021 GCCTCATGATAAGTCCTCACAC 58.538 50.000 0.00 0.00 0.00 3.82
3901 4527 2.435805 GGCCTCATGATAAGTCCTCACA 59.564 50.000 0.00 0.00 0.00 3.58
3902 4528 2.435805 TGGCCTCATGATAAGTCCTCAC 59.564 50.000 3.32 0.00 0.00 3.51
3903 4529 2.763039 TGGCCTCATGATAAGTCCTCA 58.237 47.619 3.32 0.00 0.00 3.86
3904 4530 3.616076 CGATGGCCTCATGATAAGTCCTC 60.616 52.174 3.32 0.00 32.98 3.71
3905 4531 2.301296 CGATGGCCTCATGATAAGTCCT 59.699 50.000 3.32 0.00 32.98 3.85
3906 4532 2.693069 CGATGGCCTCATGATAAGTCC 58.307 52.381 3.32 0.00 32.98 3.85
3907 4533 2.072298 GCGATGGCCTCATGATAAGTC 58.928 52.381 3.32 0.00 32.98 3.01
3908 4534 1.417517 TGCGATGGCCTCATGATAAGT 59.582 47.619 3.32 0.00 38.85 2.24
3909 4535 2.174363 TGCGATGGCCTCATGATAAG 57.826 50.000 3.32 0.00 38.85 1.73
3910 4536 2.158769 AGTTGCGATGGCCTCATGATAA 60.159 45.455 3.32 0.00 38.85 1.75
3911 4537 1.417517 AGTTGCGATGGCCTCATGATA 59.582 47.619 3.32 0.00 38.85 2.15
3912 4538 0.182061 AGTTGCGATGGCCTCATGAT 59.818 50.000 3.32 0.00 38.85 2.45
3913 4539 0.829990 TAGTTGCGATGGCCTCATGA 59.170 50.000 3.32 0.00 38.85 3.07
3914 4540 1.600957 CTTAGTTGCGATGGCCTCATG 59.399 52.381 3.32 0.00 38.85 3.07
3915 4541 1.475751 CCTTAGTTGCGATGGCCTCAT 60.476 52.381 3.32 0.00 38.85 2.90
3916 4542 0.107703 CCTTAGTTGCGATGGCCTCA 60.108 55.000 3.32 0.00 38.85 3.86
3917 4543 0.815615 CCCTTAGTTGCGATGGCCTC 60.816 60.000 3.32 0.00 38.85 4.70
3918 4544 1.224592 CCCTTAGTTGCGATGGCCT 59.775 57.895 3.32 0.00 38.85 5.19
3919 4545 2.481471 GCCCTTAGTTGCGATGGCC 61.481 63.158 0.00 0.00 38.85 5.36
3920 4546 2.481471 GGCCCTTAGTTGCGATGGC 61.481 63.158 0.00 0.00 38.16 4.40
3921 4547 1.097547 CAGGCCCTTAGTTGCGATGG 61.098 60.000 0.00 0.00 0.00 3.51
3922 4548 0.392998 ACAGGCCCTTAGTTGCGATG 60.393 55.000 0.00 0.00 0.00 3.84
3923 4549 0.328258 AACAGGCCCTTAGTTGCGAT 59.672 50.000 0.00 0.00 0.00 4.58
3924 4550 0.321298 GAACAGGCCCTTAGTTGCGA 60.321 55.000 0.00 0.00 0.00 5.10
3925 4551 0.321653 AGAACAGGCCCTTAGTTGCG 60.322 55.000 0.00 0.00 0.00 4.85
3926 4552 1.168714 CAGAACAGGCCCTTAGTTGC 58.831 55.000 0.00 0.00 0.00 4.17
3927 4553 2.859165 TCAGAACAGGCCCTTAGTTG 57.141 50.000 0.00 0.00 0.00 3.16
3928 4554 3.185455 AGATCAGAACAGGCCCTTAGTT 58.815 45.455 0.00 0.00 0.00 2.24
3929 4555 2.769095 GAGATCAGAACAGGCCCTTAGT 59.231 50.000 0.00 0.00 0.00 2.24
3930 4556 2.103941 GGAGATCAGAACAGGCCCTTAG 59.896 54.545 0.00 0.00 0.00 2.18
3931 4557 2.119495 GGAGATCAGAACAGGCCCTTA 58.881 52.381 0.00 0.00 0.00 2.69
3932 4558 0.915364 GGAGATCAGAACAGGCCCTT 59.085 55.000 0.00 0.00 0.00 3.95
3933 4559 0.043940 AGGAGATCAGAACAGGCCCT 59.956 55.000 0.00 0.00 0.00 5.19
3934 4560 0.467804 GAGGAGATCAGAACAGGCCC 59.532 60.000 0.00 0.00 0.00 5.80
3935 4561 0.467804 GGAGGAGATCAGAACAGGCC 59.532 60.000 0.00 0.00 0.00 5.19
3936 4562 1.198713 TGGAGGAGATCAGAACAGGC 58.801 55.000 0.00 0.00 0.00 4.85
3937 4563 3.262915 AGTTTGGAGGAGATCAGAACAGG 59.737 47.826 0.00 0.00 30.68 4.00
3938 4564 4.550076 AGTTTGGAGGAGATCAGAACAG 57.450 45.455 0.00 0.00 30.68 3.16
3939 4565 4.982241 AAGTTTGGAGGAGATCAGAACA 57.018 40.909 0.00 0.00 30.68 3.18
3940 4566 5.308825 TGAAAGTTTGGAGGAGATCAGAAC 58.691 41.667 0.00 0.00 0.00 3.01
3941 4567 5.567037 TGAAAGTTTGGAGGAGATCAGAA 57.433 39.130 0.00 0.00 0.00 3.02
3942 4568 5.567037 TTGAAAGTTTGGAGGAGATCAGA 57.433 39.130 0.00 0.00 0.00 3.27
3943 4569 6.264067 AGTTTTGAAAGTTTGGAGGAGATCAG 59.736 38.462 0.00 0.00 0.00 2.90
3944 4570 6.129179 AGTTTTGAAAGTTTGGAGGAGATCA 58.871 36.000 0.00 0.00 0.00 2.92
3945 4571 6.641169 AGTTTTGAAAGTTTGGAGGAGATC 57.359 37.500 0.00 0.00 0.00 2.75
3946 4572 6.836007 AGAAGTTTTGAAAGTTTGGAGGAGAT 59.164 34.615 0.00 0.00 32.00 2.75
3947 4573 6.187682 AGAAGTTTTGAAAGTTTGGAGGAGA 58.812 36.000 0.00 0.00 32.00 3.71
3948 4574 6.095440 TGAGAAGTTTTGAAAGTTTGGAGGAG 59.905 38.462 0.00 0.00 32.00 3.69
3949 4575 5.949354 TGAGAAGTTTTGAAAGTTTGGAGGA 59.051 36.000 0.00 0.00 32.00 3.71
3950 4576 6.207691 TGAGAAGTTTTGAAAGTTTGGAGG 57.792 37.500 0.00 0.00 32.00 4.30
3951 4577 8.532977 TTTTGAGAAGTTTTGAAAGTTTGGAG 57.467 30.769 0.00 0.00 32.00 3.86
3952 4578 9.150348 GATTTTGAGAAGTTTTGAAAGTTTGGA 57.850 29.630 0.00 0.00 32.00 3.53
3953 4579 9.154847 AGATTTTGAGAAGTTTTGAAAGTTTGG 57.845 29.630 0.00 0.00 32.00 3.28
3954 4580 9.962759 CAGATTTTGAGAAGTTTTGAAAGTTTG 57.037 29.630 0.00 0.00 32.00 2.93
3955 4581 8.659491 GCAGATTTTGAGAAGTTTTGAAAGTTT 58.341 29.630 0.00 0.00 32.00 2.66
3956 4582 8.037166 AGCAGATTTTGAGAAGTTTTGAAAGTT 58.963 29.630 0.00 0.00 34.41 2.66
3957 4583 7.550712 AGCAGATTTTGAGAAGTTTTGAAAGT 58.449 30.769 0.00 0.00 0.00 2.66
3958 4584 7.998753 AGCAGATTTTGAGAAGTTTTGAAAG 57.001 32.000 0.00 0.00 0.00 2.62
3959 4585 8.034215 TGAAGCAGATTTTGAGAAGTTTTGAAA 58.966 29.630 0.00 0.00 0.00 2.69
3960 4586 7.546358 TGAAGCAGATTTTGAGAAGTTTTGAA 58.454 30.769 0.00 0.00 0.00 2.69
3961 4587 7.067372 TCTGAAGCAGATTTTGAGAAGTTTTGA 59.933 33.333 0.00 0.00 35.39 2.69
3962 4588 7.198390 TCTGAAGCAGATTTTGAGAAGTTTTG 58.802 34.615 0.00 0.00 35.39 2.44
3963 4589 7.338800 TCTGAAGCAGATTTTGAGAAGTTTT 57.661 32.000 0.00 0.00 35.39 2.43
3964 4590 6.949352 TCTGAAGCAGATTTTGAGAAGTTT 57.051 33.333 0.00 0.00 35.39 2.66
3965 4591 6.949352 TTCTGAAGCAGATTTTGAGAAGTT 57.051 33.333 0.00 0.00 40.39 2.66
3966 4592 6.557291 CTTCTGAAGCAGATTTTGAGAAGT 57.443 37.500 4.20 0.00 40.39 3.01
3986 4612 0.246635 TGGAGTACGAAGCCAGCTTC 59.753 55.000 20.10 20.10 46.41 3.86
3987 4613 0.037232 GTGGAGTACGAAGCCAGCTT 60.037 55.000 4.17 4.17 39.23 3.74
3988 4614 1.592223 GTGGAGTACGAAGCCAGCT 59.408 57.895 0.00 0.00 31.18 4.24
3989 4615 1.448013 GGTGGAGTACGAAGCCAGC 60.448 63.158 11.49 11.49 42.15 4.85
3990 4616 1.405821 CTAGGTGGAGTACGAAGCCAG 59.594 57.143 0.00 0.00 31.18 4.85
3991 4617 1.471119 CTAGGTGGAGTACGAAGCCA 58.529 55.000 0.00 0.00 0.00 4.75
3992 4618 0.102663 GCTAGGTGGAGTACGAAGCC 59.897 60.000 0.00 0.00 33.81 4.35
3993 4619 0.248539 CGCTAGGTGGAGTACGAAGC 60.249 60.000 0.00 0.00 35.52 3.86
3994 4620 1.376543 TCGCTAGGTGGAGTACGAAG 58.623 55.000 0.00 0.00 0.00 3.79
3995 4621 1.945394 GATCGCTAGGTGGAGTACGAA 59.055 52.381 0.00 0.00 32.79 3.85
3996 4622 1.134310 TGATCGCTAGGTGGAGTACGA 60.134 52.381 0.00 0.00 0.00 3.43
3997 4623 1.264557 CTGATCGCTAGGTGGAGTACG 59.735 57.143 0.00 0.00 0.00 3.67
3998 4624 1.001158 GCTGATCGCTAGGTGGAGTAC 60.001 57.143 0.00 0.00 35.14 2.73
3999 4625 1.319541 GCTGATCGCTAGGTGGAGTA 58.680 55.000 0.00 0.00 35.14 2.59
4000 4626 1.729470 CGCTGATCGCTAGGTGGAGT 61.729 60.000 7.71 0.00 36.13 3.85
4001 4627 1.007964 CGCTGATCGCTAGGTGGAG 60.008 63.158 7.71 0.00 36.13 3.86
4002 4628 1.035385 TTCGCTGATCGCTAGGTGGA 61.035 55.000 7.71 0.00 38.27 4.02
4003 4629 0.596083 CTTCGCTGATCGCTAGGTGG 60.596 60.000 7.71 0.00 38.27 4.61
4004 4630 1.211818 GCTTCGCTGATCGCTAGGTG 61.212 60.000 7.71 0.00 38.27 4.00
4005 4631 1.066587 GCTTCGCTGATCGCTAGGT 59.933 57.895 7.71 0.00 38.27 3.08
4006 4632 2.013483 CGCTTCGCTGATCGCTAGG 61.013 63.158 7.71 0.04 38.27 3.02
4007 4633 0.867753 AACGCTTCGCTGATCGCTAG 60.868 55.000 7.71 6.23 38.27 3.42
4008 4634 0.457853 AAACGCTTCGCTGATCGCTA 60.458 50.000 7.71 0.00 38.27 4.26
4009 4635 1.291877 AAAACGCTTCGCTGATCGCT 61.292 50.000 7.71 0.00 38.27 4.93
4010 4636 1.122419 CAAAACGCTTCGCTGATCGC 61.122 55.000 0.23 0.23 38.27 4.58
4011 4637 1.122419 GCAAAACGCTTCGCTGATCG 61.122 55.000 0.00 0.00 37.77 3.69
4012 4638 0.110238 TGCAAAACGCTTCGCTGATC 60.110 50.000 0.00 0.00 43.06 2.92
4013 4639 0.385974 GTGCAAAACGCTTCGCTGAT 60.386 50.000 0.00 0.00 43.06 2.90
4014 4640 1.010125 GTGCAAAACGCTTCGCTGA 60.010 52.632 0.00 0.00 43.06 4.26
4015 4641 2.349376 CGTGCAAAACGCTTCGCTG 61.349 57.895 0.00 0.00 46.99 5.18
4016 4642 2.052237 CGTGCAAAACGCTTCGCT 60.052 55.556 0.00 0.00 46.99 4.93
4024 4650 1.602377 AGAAGCTACCACGTGCAAAAC 59.398 47.619 10.91 0.00 0.00 2.43
4025 4651 1.871039 GAGAAGCTACCACGTGCAAAA 59.129 47.619 10.91 0.00 0.00 2.44
4026 4652 1.508632 GAGAAGCTACCACGTGCAAA 58.491 50.000 10.91 0.00 0.00 3.68
4027 4653 0.320421 GGAGAAGCTACCACGTGCAA 60.320 55.000 10.91 0.00 0.00 4.08
4028 4654 1.292223 GGAGAAGCTACCACGTGCA 59.708 57.895 10.91 0.00 0.00 4.57
4029 4655 1.448013 GGGAGAAGCTACCACGTGC 60.448 63.158 10.91 0.00 33.84 5.34
4030 4656 1.218316 GGGGAGAAGCTACCACGTG 59.782 63.158 9.08 9.08 35.82 4.49
4031 4657 2.348888 CGGGGAGAAGCTACCACGT 61.349 63.158 17.27 0.00 46.34 4.49
4032 4658 2.494918 CGGGGAGAAGCTACCACG 59.505 66.667 13.20 13.20 46.31 4.94
4033 4659 2.187163 GCGGGGAGAAGCTACCAC 59.813 66.667 0.00 2.48 35.82 4.16
4034 4660 3.458163 CGCGGGGAGAAGCTACCA 61.458 66.667 0.00 0.00 35.82 3.25
4035 4661 2.029307 AATCGCGGGGAGAAGCTACC 62.029 60.000 6.13 0.00 32.58 3.18
4036 4662 0.179081 AAATCGCGGGGAGAAGCTAC 60.179 55.000 6.13 0.00 0.00 3.58
4037 4663 0.179084 CAAATCGCGGGGAGAAGCTA 60.179 55.000 6.13 0.00 0.00 3.32
4038 4664 1.450312 CAAATCGCGGGGAGAAGCT 60.450 57.895 6.13 0.00 0.00 3.74
4039 4665 2.472909 CCAAATCGCGGGGAGAAGC 61.473 63.158 6.13 0.00 0.00 3.86
4040 4666 2.472909 GCCAAATCGCGGGGAGAAG 61.473 63.158 6.13 0.00 0.00 2.85
4041 4667 2.437716 GCCAAATCGCGGGGAGAA 60.438 61.111 6.13 0.00 0.00 2.87
4042 4668 4.483243 GGCCAAATCGCGGGGAGA 62.483 66.667 6.13 0.00 0.00 3.71
4048 4674 4.174129 GAACCGGGCCAAATCGCG 62.174 66.667 6.32 0.00 41.28 5.87
4049 4675 2.750237 AGAACCGGGCCAAATCGC 60.750 61.111 6.32 0.00 0.00 4.58
4050 4676 3.051392 GCAGAACCGGGCCAAATCG 62.051 63.158 6.32 0.00 0.00 3.34
4051 4677 1.976474 TGCAGAACCGGGCCAAATC 60.976 57.895 6.32 0.00 0.00 2.17
4052 4678 2.117206 TGCAGAACCGGGCCAAAT 59.883 55.556 6.32 0.00 0.00 2.32
4053 4679 2.909965 GTGCAGAACCGGGCCAAA 60.910 61.111 6.32 0.00 0.00 3.28
4058 4684 3.229156 TACCACGTGCAGAACCGGG 62.229 63.158 10.91 0.00 0.00 5.73
4059 4685 1.736645 CTACCACGTGCAGAACCGG 60.737 63.158 10.91 0.00 0.00 5.28
4060 4686 2.380410 GCTACCACGTGCAGAACCG 61.380 63.158 10.91 0.00 0.00 4.44
4061 4687 0.602905 AAGCTACCACGTGCAGAACC 60.603 55.000 10.91 0.00 0.00 3.62
4062 4688 0.790814 GAAGCTACCACGTGCAGAAC 59.209 55.000 10.91 0.00 0.00 3.01
4063 4689 0.679505 AGAAGCTACCACGTGCAGAA 59.320 50.000 10.91 0.00 0.00 3.02
4064 4690 0.243907 GAGAAGCTACCACGTGCAGA 59.756 55.000 10.91 0.00 0.00 4.26
4065 4691 0.737715 GGAGAAGCTACCACGTGCAG 60.738 60.000 10.91 10.48 0.00 4.41
4066 4692 1.292223 GGAGAAGCTACCACGTGCA 59.708 57.895 10.91 0.00 0.00 4.57
4067 4693 1.448013 GGGAGAAGCTACCACGTGC 60.448 63.158 10.91 0.00 33.84 5.34
4068 4694 1.218316 GGGGAGAAGCTACCACGTG 59.782 63.158 9.08 9.08 35.82 4.49
4069 4695 2.348888 CGGGGAGAAGCTACCACGT 61.349 63.158 17.27 0.00 46.34 4.49
4070 4696 2.494918 CGGGGAGAAGCTACCACG 59.505 66.667 13.20 13.20 46.31 4.94
4071 4697 2.187163 GCGGGGAGAAGCTACCAC 59.813 66.667 0.00 2.48 35.82 4.16
4072 4698 3.458163 CGCGGGGAGAAGCTACCA 61.458 66.667 0.00 0.00 35.82 3.25
4073 4699 2.029307 AATCGCGGGGAGAAGCTACC 62.029 60.000 6.13 0.00 32.58 3.18
4074 4700 0.179081 AAATCGCGGGGAGAAGCTAC 60.179 55.000 6.13 0.00 0.00 3.58
4075 4701 0.179084 CAAATCGCGGGGAGAAGCTA 60.179 55.000 6.13 0.00 0.00 3.32
4076 4702 1.450312 CAAATCGCGGGGAGAAGCT 60.450 57.895 6.13 0.00 0.00 3.74
4077 4703 2.472909 CCAAATCGCGGGGAGAAGC 61.473 63.158 6.13 0.00 0.00 3.86
4078 4704 2.472909 GCCAAATCGCGGGGAGAAG 61.473 63.158 6.13 0.00 0.00 2.85
4079 4705 2.437716 GCCAAATCGCGGGGAGAA 60.438 61.111 6.13 0.00 0.00 2.87
4080 4706 4.483243 GGCCAAATCGCGGGGAGA 62.483 66.667 6.13 0.00 0.00 3.71
4086 4712 4.174129 GAACCGGGCCAAATCGCG 62.174 66.667 6.32 0.00 41.28 5.87
4087 4713 2.750237 AGAACCGGGCCAAATCGC 60.750 61.111 6.32 0.00 0.00 4.58
4088 4714 3.051392 GCAGAACCGGGCCAAATCG 62.051 63.158 6.32 0.00 0.00 3.34
4089 4715 1.976474 TGCAGAACCGGGCCAAATC 60.976 57.895 6.32 0.00 0.00 2.17
4090 4716 2.117206 TGCAGAACCGGGCCAAAT 59.883 55.556 6.32 0.00 0.00 2.32
4091 4717 2.909965 GTGCAGAACCGGGCCAAA 60.910 61.111 6.32 0.00 0.00 3.28
4096 4722 3.229156 TACCACGTGCAGAACCGGG 62.229 63.158 10.91 0.00 0.00 5.73
4097 4723 1.736645 CTACCACGTGCAGAACCGG 60.737 63.158 10.91 0.00 0.00 5.28
4098 4724 2.380410 GCTACCACGTGCAGAACCG 61.380 63.158 10.91 0.00 0.00 4.44
4099 4725 0.602905 AAGCTACCACGTGCAGAACC 60.603 55.000 10.91 0.00 0.00 3.62
4100 4726 0.790814 GAAGCTACCACGTGCAGAAC 59.209 55.000 10.91 0.00 0.00 3.01
4101 4727 0.679505 AGAAGCTACCACGTGCAGAA 59.320 50.000 10.91 0.00 0.00 3.02
4102 4728 0.243907 GAGAAGCTACCACGTGCAGA 59.756 55.000 10.91 0.00 0.00 4.26
4103 4729 0.737715 GGAGAAGCTACCACGTGCAG 60.738 60.000 10.91 10.48 0.00 4.41
4104 4730 1.292223 GGAGAAGCTACCACGTGCA 59.708 57.895 10.91 0.00 0.00 4.57
4105 4731 1.448013 GGGAGAAGCTACCACGTGC 60.448 63.158 10.91 0.00 33.84 5.34
4106 4732 1.218316 GGGGAGAAGCTACCACGTG 59.782 63.158 9.08 9.08 35.82 4.49
4107 4733 2.348888 CGGGGAGAAGCTACCACGT 61.349 63.158 17.27 0.00 46.34 4.49
4108 4734 2.494918 CGGGGAGAAGCTACCACG 59.505 66.667 13.20 13.20 46.31 4.94
4109 4735 2.187163 GCGGGGAGAAGCTACCAC 59.813 66.667 0.00 2.48 35.82 4.16
4110 4736 3.458163 CGCGGGGAGAAGCTACCA 61.458 66.667 0.00 0.00 35.82 3.25
4111 4737 2.029307 AATCGCGGGGAGAAGCTACC 62.029 60.000 6.13 0.00 32.58 3.18
4112 4738 0.179081 AAATCGCGGGGAGAAGCTAC 60.179 55.000 6.13 0.00 0.00 3.58
4113 4739 0.179084 CAAATCGCGGGGAGAAGCTA 60.179 55.000 6.13 0.00 0.00 3.32
4114 4740 1.450312 CAAATCGCGGGGAGAAGCT 60.450 57.895 6.13 0.00 0.00 3.74
4115 4741 2.472909 CCAAATCGCGGGGAGAAGC 61.473 63.158 6.13 0.00 0.00 3.86
4116 4742 2.472909 GCCAAATCGCGGGGAGAAG 61.473 63.158 6.13 0.00 0.00 2.85
4117 4743 2.437716 GCCAAATCGCGGGGAGAA 60.438 61.111 6.13 0.00 0.00 2.87
4118 4744 4.483243 GGCCAAATCGCGGGGAGA 62.483 66.667 6.13 0.00 0.00 3.71
4136 4762 4.277593 CTAGCAGCCTCCCGAGCG 62.278 72.222 0.00 0.00 34.64 5.03
4137 4763 4.600576 GCTAGCAGCCTCCCGAGC 62.601 72.222 10.63 0.00 34.48 5.03
4146 4772 3.595819 CCCAACAAGGCTAGCAGC 58.404 61.111 18.24 0.00 41.46 5.25
4154 4780 2.162681 CCAAACTAGAGCCCAACAAGG 58.837 52.381 0.00 0.00 37.03 3.61
4155 4781 2.162681 CCCAAACTAGAGCCCAACAAG 58.837 52.381 0.00 0.00 0.00 3.16
4156 4782 1.821666 GCCCAAACTAGAGCCCAACAA 60.822 52.381 0.00 0.00 0.00 2.83
4157 4783 0.251165 GCCCAAACTAGAGCCCAACA 60.251 55.000 0.00 0.00 0.00 3.33
4158 4784 0.965866 GGCCCAAACTAGAGCCCAAC 60.966 60.000 0.00 0.00 39.60 3.77
4159 4785 1.382629 GGCCCAAACTAGAGCCCAA 59.617 57.895 0.00 0.00 39.60 4.12
4160 4786 1.214305 ATGGCCCAAACTAGAGCCCA 61.214 55.000 0.00 0.00 45.14 5.36
4161 4787 0.033109 AATGGCCCAAACTAGAGCCC 60.033 55.000 0.00 0.00 45.14 5.19
4162 4788 1.106285 CAATGGCCCAAACTAGAGCC 58.894 55.000 0.00 1.12 45.96 4.70
4163 4789 1.106285 CCAATGGCCCAAACTAGAGC 58.894 55.000 0.00 0.00 0.00 4.09
4164 4790 2.648059 CTCCAATGGCCCAAACTAGAG 58.352 52.381 0.00 0.00 0.00 2.43
4165 4791 1.284785 CCTCCAATGGCCCAAACTAGA 59.715 52.381 0.00 0.00 0.00 2.43
4166 4792 1.767759 CCTCCAATGGCCCAAACTAG 58.232 55.000 0.00 0.00 0.00 2.57
4167 4793 0.324275 GCCTCCAATGGCCCAAACTA 60.324 55.000 0.00 0.00 46.82 2.24
4168 4794 1.610379 GCCTCCAATGGCCCAAACT 60.610 57.895 0.00 0.00 46.82 2.66
4169 4795 2.981302 GCCTCCAATGGCCCAAAC 59.019 61.111 0.00 0.00 46.82 2.93
4176 4802 2.441532 CTGGGCTGCCTCCAATGG 60.442 66.667 19.68 0.00 33.36 3.16
4177 4803 0.901580 AAACTGGGCTGCCTCCAATG 60.902 55.000 19.68 5.26 33.36 2.82
4178 4804 0.901580 CAAACTGGGCTGCCTCCAAT 60.902 55.000 19.68 0.00 33.36 3.16
4179 4805 1.531365 CAAACTGGGCTGCCTCCAA 60.531 57.895 19.68 1.24 33.36 3.53
4180 4806 2.115910 CAAACTGGGCTGCCTCCA 59.884 61.111 19.68 8.08 0.00 3.86
4181 4807 2.677875 CCAAACTGGGCTGCCTCC 60.678 66.667 19.68 2.99 32.67 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.