>input_sequence_36337
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--------ATGGACGGCCTCCCCGACGCGGCGCCGCCCGCGCCGG------CGCCGCAGCAGCAGCCGAAGCGCGACGAG
TGGAGCGAGAGCGGCATCTCGCGCCTGCTCGAGGCCTACGAGGCCAAGTGGCTGCTCCGCAACCGGGCCAAGCTCAAGTG
GAGCGACTGGGTCGACATCGCCCACGACGTCTCCGCCCACTGCTCCTCCTCCGACCACGC---CTCCAAGCCCGGCGCCG
CTGCCGGGGGCACCGCCAAGACCCCCAACCAGTGCAAGAACAAGGTCGAGTCCATGAAGAAGCGCTACCGGGCCGAGTCG
GCCGCCGCCACGCGCGCCGGAGTAGCCGGGGCAGCCAGCGCCTCCGGTGGCCCGTCGTGGCGCTTCTTCGGCCGCATGGA
CGGGCTGCTCAAGGGGCCGGCCGCCGGCTGCTCTGGCCAGCCGCAGGCGCAACCGGAGCCGAGTAACGATGGCATCGTCC
AGCCGCGAGCACCGCTGAAAGCAGAGCCGGAGGCCGACGCCGAAGCAGACACCGCCCTCCAGCAGCCGCCGGACACCGCA
GGGCCGCCCGGGGCGCTCTCCGAGCTACTCAACGCAGACGCCAACGGCTCCGCGACCGTGAAGGCCGAGAAGACCGTCGA
TCAGGCCACGCACAAGGAGACCAGCAGGGCGGCGGACAGCGACGCCGCAAATGTGAGCTCTCCGCGGAGCAAGGAGGTGG
AGGCGGAGGCGAACGACGACGGCGCCGAGGAGGCCTGGGACGCGCCGGGGAGGAAGCGGAAGGGCCCTGAGCTGGACGTC
GCGAGGAGCATCGAGCTGCTGGCGAGCTCGTTCGTGAAGATCGAGCGGGCCAGGCTGGAGGTGTACCGGGACACGGAGCG
GATGAGGGCCGAGGCCGAGGTGAAGAGGGGCGAGATGGAGCTGAGGAGGACGGAGATCATGGCCAAGACGCAGCTGCAGA
TCGCCAGGCTCTTCGCCAAGCGGCTCAAGGAGTGCGTCGGCGGT---AACGGCGGCAGCTCGTCTCAAGTGGACACGCTT
GCCAAGAAAGGCGAAAATGGTTAGTTCCAACTTAAAACCAGCTTAC-----------CAGTAAGATTG--------CTGT
TCATATTCAGTGCTGCAAGAGCATCCTAAATGGTGTATGGTGTGAGATATGGGTATGTGGAAGTGCATTTCCGGCTTCAT
CTTACACTCTATCGCTGTCAGTTAATTACTGCAATCATGCTATGTTTGGAGCTACTTTTCTATCTAGTCCTGGAAAATCA
TCACTGATAGAATGGGAAATTGCAGCATGAGGTTATTCTTGCACCAATATGGTAA------CTACTAGGAACAAGATGGT
CTCTGGATTCACTTCAGTGTTTGCTTCAGACGTATACTACTAAAGCAGCTTTTCATTCTGTAGTACTAGTACTGTGATGG
TTCAGACACTTTCTGAGCTTGACTGAACTGAAA------TACATTTCTGTGGAACGGCTGAACTTTTGAAGCCTTTCCTT
CCTATCGAGACCTACCGTCTCATTCTACAGCGCTGTTCTACCATTTGGCCGGGGCTGAATGTTGTCC-CCGTGTGTTGCT
ATGTATGACAGACTCCATTCGGGTTATTTTATTGGCAAAAACAAAGTGAAAAACCGCATGTTAGAACTAAAATCTTGGTA
TAACTAGTGTCATACATG-CTCTGCTAGAAGAGGGT----------GTATTTTGAGTATCGT-TTACTGACATAAACGCA
AACACGGTACCGGGATCTGATGTTC-TAACTTGTAGGCAGCAGAAGGCTTGATTGTTGTTGACATATAATGCATGCTCTG
--------------------------------------------------------------------------------
---AATGTTTAGTTCCATTGCAAGACTGTATAGTGGAATTCAGGTACTGTGGTAACGCAGGGGGCCAAAATATAATCTCC
TCATTAAACGGATCAGAGGTCTCGCGGTACTATGCTATGGGGGTCA-----------------ATGGACAATTATAGAAC
TTAATCCTTGGATGATATGAACCTGCTGCGAGGAGTCGGCTAGGTGTTGCTTCGACTTTGTTAGCATACATTCTCAAAAT
TTAGGCGTGCTTATTTAGTTGCAAGACGGATTTTCATTTTATCTTATGAAAAGCACCATCTTGTACGGTCTGCTGACATC
CTTACTCTTTTTCTCTTTGAAATCT----------TGCAGGAGAACTGCATGTAACTCATCTTGTTTTCTAC--TACTAT
TTAGTTTTCAGTTCTCTTCTCAACAATTTGGCTTACGGGTTTCAGGTTCAGGGTGA------------------------
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>chr5B_1_TraesCS5B01G362600
GCGGGCGGAGTCCCACCCAGCAAGAA----GCAACCAACCACCACGGTTGGGGTTG------------GGGTTGGGGTCA
CCGCCCGCCCGCCGGACGCGCCAGCGACAGCGACGAATCAATCCATCCGCTTTGTTTTGCCGCCGG----------GCCG
CGCCGATCCGGTCAGCGCGCGCGTCACGCCCC------------------------------------------------
----CGCTCCCGTCGGCTAATGCGGTCCGACGCGACGCGCGCCTCCACTTCCCGCCCGCCCTCGCTGTCCGTGGCGGGCC
TACCTCACGCGGCCGGCAGTTGGCAACCGTGGCCGCGCGGGCAGGCGGGCGGAGTCCTCTCTCCCCCC------------
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---------------------------------------------------------CACTTTCCCCCTCCCCCCACGGA
G-----AGGAGAGGGATCCTTCCCCGCCCCACCTCCCGGCCCCGGC-----CCCGGCCGCCACCCTCCCTTTTCTTT-CC
GAGCTCGAATCAAGTCCCCTCGCCCTGCCGCCGCTGCCGCCGCGGCCTAGCCCTTGACTCTTCTCCACGACGC-------
--TCCCCCGCTGTCTTTTGACCGCTCCAAACTTGCTTTCTTGCTTCTCTT-CCCCCTTGATCGCGGCTAGCCAT------
GGGGTTATGAGTGACACAGCGCTTGCTTTGGATTCAGCTGTTCGTCCGTCCGGCAGCGGCACGGCACCCGCTGCCGCATC
ATAACCGCCGGCCTGCCCTTTCTGCTCCATCTGGGAAGTTAGCTCCTCCCGAAATTCCCTTCTTTCGTCACCCCTGGAAA
AAGGGAAGGAAAAGGCGCCATCTTTTCCGATCCCAGCTTCAGGCCAGGGA-CACACCATCCTCCCCTGATCGCTCACGCG
GCAGGCCTCCAGCTTCAGAGATTGAGCCAAGCTCTTCTTCTTCCCGAGCAGAATTCAGGCTCTGGTGCACCGGTTTTGA-
--------GCAGATCCCCGTGCCGGAGAGG------------------GATCTTCTCGCCGACAGACTGACAGAGTCAGA
CGGTCTCGGTCCAACTGCTCCCCTGCCTCTGCTTAAGCTCGGTCCCCAGTTTTGGGGCTCCGG------CTGCTCTGCTG
CGGCCTCGATGGACGGCCTCCCCGACGCGGCGCCGCCCGCGCCGG------CGCCGCAGCAGCAGCCGAAGCGCGACGAG
TGGAGCGAGAGCGGCATCTCGCGCCTGCTCGAGGCCTACGAGGCCAAGTGGCTGCTCCGCAACCGGGCCAAGCTCAAGTG
GAGCGACTGGGTCGACATCGCCCACGACGTCTCCGCCCACTGCTCCTCCTCCGACCACGC---CTCCAAGCCCGGCGCCG
CTGCCGGGGGCACCGCCAAGACCCCCAACCAGTGCAAGAACAAGGTCGAGTCCATGAAGAAGCGCTACCGGGCCGAGTCG
GCCGCCGCCACGCGCGCCGGAGTAGCCGGGGCAGCCAGCGCCTCCGGTGGCCCGTCGTGGCGCTTCTTCGGCCGCATGGA
CGGGCTGCTCAAGGGGCCGGCCGCCGGCTGCTCTGGCCAGCCGCAGGCGCAACCGGAGCCGAGTAACGATGGCATCGTCC
AGCCGCGAGCACCGCTGAAAGCAGAGCCGGAGGCCGACGCCGAAGCAGACACCGCCCTCCAGCAGCCGCCGGACACCGCA
GGGCCGCCCGGGGCGCTCTCCGAGCTACTCAACGCAGACGCCAACGGCTCCGCGACCGTGAAGGCCGAGAAGACCGTCGA
TCAGGCCACGCACAAGGAGACCAGCAGGGCGGCGGACAGCGACGCCGCAAATGTGAGCTCTCCGCGGAGCAAGGAGGTGG
AGGCGGAGGCGAACGACGACGGCGCCGAGGAGGCCTGGGACGCGCCGGGGAGGAAGCGGAAGGGCCCTGAGCTGGACGTC
GCGAGGAGCATCGAGCTGCTGGCGAGCTCGTTCGTGAAGATCGAGCGGGCCAGGCTGGAGGTGTACCGGGACACGGAGCG
GATGAGGGCCGAGGCCGAGGTGAAGAGGGGCGAGATGGAGCTGAGGAGGACGGAGATCATGGCCAAGACGCAGCTGCAGA
TCGCCAGGCTCTTCGCCAAGCGGCTCAAGGAGTGCGTCGGCGGT---AACGGCGGCAGCTCGTCTCAAGTGGACACGCTT
GCCAAGAAAGGCGAAAATGGTTAGTTCCAACTTAAAACCAGCTTAC-----------CAGTAAGATTG--------CTGT
TCATATTCAGTGCTGCAAGAGCATCCTAAATGGTGTATGGTGTGAGATATGGGTATGTGGAAGTGCATTTCCGGCTTCAT
CTTACACTCTATCGCTGTCAGTTAATTACTGCAATCATGCTATGTTTGGAGCTACTTTTCTATCTAGTCCTGGAAAATCA
TCACTGATAGAATGGGAAATTGCAGCATGAGGTTATTCTTGCACCAATATGGTAA------CTACTAGGAACAAGATGGT
CTCTGGATTCACTTCAGTGTTTGCTTCAGACGTATACTACTAAAGCAGCTTTTCATTCTGTAGTACTAGTACTGTGATGG
TTCAGACACTTTCTGAGCTTGACTGAACTGAAA------TACATTTCTGTGGAACGGCTGAACTTTTGAAGCCTTTCCTT
CCTATCGAGACCTACCGTCTCATTCTACAGCGCTGTTCTACCATTTGGCCGGGGCTGAATGTTGTCC-CCGTGTGTTGCT
ATGTATGACAGACTCCATTCGGGTTATTTTATTGGCAAAAACAAAGTGAAAAACCGCATGTTAGAACTAAAATCTTGGTA
TAACTAGTGTCATACATG-CTCTGCTAGAAGAGGGT----------GTATTTTGAGTATCGT-TTACTGACATAAACGCA
AACACGGTACCGGGATCTGATGTTC-TAACTTGTAGGCAGCAGAAGGCTTGATTGTTGTTGACATATAATGCATGCTCTG
--------------------------------------------------------------------------------
---AATGTTTAGTTCCATTGCAAGACTGTATAGTGGAATTCAGGTACTGTGGTAACGCAGGGGGCCAAAATATAATCTCC
TCATTAAACGGATCAGAGGTCTCGCGGTACTATGCTATGGGGGTCA-----------------ATGGACAATTATAGAAC
TTAATCCTTGGATGATATGAACCTGCTGCGAGGAGTCGGCTAGGTGTTGCTTCGACTTTGTTAGCATACATTCTCAAAAT
TTAGGCGTGCTTATTTAGTTGCAAGACGGATTTTCATTTTATCTTATGAAAAGCACCATCTTGTACGGTCTGCTGACATC
CTTACTCTTTTTCTCTTTGAAATCT----------TGCAGGAGAACTGCATGTAACTCATCTTGTTTTCTAC--TACTAT
TTAGTTTTCAGTTCTCTTCTCAACAATTTGGCTTACGGGTTTCAGGTTCAGGGTGACTGGCCAATCAAAACACCTGTGAA
TTGTGATTCTCCTCCCCTGGCGCCGCACGAGTTCTAAACAGAAGGCCGGTATCGCACTCCATTCATGTGCGGAAAATGTA
TGTC-GATTGATTTAGCTTCACCATGAGAGTGAAGGCATAGTGTAGCCGTAAAGATCGAAATGCAATAACGGAAGCACCA
GTGCCCCTTTCCAGCAGGGTGTTAGAAGATGCAGTTTTACAATCAGGAGTAGTTTGCTAGTCCGAAAATTTGTCAACTTG
CATTCCTACTGAAACTGTTTTGCTGACAACATTTGTAAGATGCTGTGG-------TTCTCTCTCAGTGCTGGAAGCCGGA
TGCTTGAGGTGCTATGGTGTTTGTGTGACTGTTGATGGTATGATTCATTCGTGTACTGTGTATGCATCATCCACGGCTAC
CTTTTCCATATATGTAATGTGTGCATCATCCATGCTCTTACCTTTTTCCATGTGCTGTACATGGCTTCAAAAAGTCATTT
TGTTTTCAAACTTTTCAGATATAAGGAGGCGACGGGGATTCCTTTTTTGGGCTACCCTTTTTGCCAAATAAATAAATAAA
TCCATCTGCCAGTGTACCCGCGAAAAGCCCCCAATACTTTAGCTCAGGAACATGAACATGTGGTTAACTCAGATCGGCAC
CACCCGCGAGGAACGTGTCGTGGTTTTGTCACGGCAAATGTCCTAGTGTGAGGACTTATCATGAGGCCATCGCAACTAAG
GGCCTGTTCTGATCTCCTCCAAACTTTCAAAACTTCTCAAAATCTGCTTCAGAAGCTGGCTTCGTACTCCACCTAGCGAT
CAGCGAAGCGTTTTGCACGTGGTAGCTTCTCCCCGCGATTTGGCCCGGTTCTGCACGTGGTAGCTTCTCCCCGCGATTTG
GCCCGGTTCTGCACGTGGTAGCTTCTCCCCGCGATTTGGCCCGCTCGGGAGGCTGCTAGCCTTGTTGGGCTCTAGTTTGG
GCCATTGGAGGCAGCCCAGTTTGG
>chr5A_1
GCGGGCGGAGTCCCACCGAGCAAGAA-GAGGCAACCAACCACCACGGTTGGGGTTG------------GGGTCACCGT--
CCGCCCGCCCGCCGGACGCGCCAGCGACAGCGACGAATCCATCAATCCGCTTTGTTTTGCCGCCGG----------GCCG
CGCCGATCCGGTCAGCGCGCGCGTCACGCCCCACTCCCCCGCCCCAGCCCCAGCCCCCGCTCCCGCTCCCCGCCCCGCCC
CGCCCGCTCCCGTCGGCTAATGCGGTCCGACGCGGCGCGCGCCTCCAC-TCCCTCCCGCCCTCGCTGTCCGTGGCGGGCC
TACCTCACGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTTTCCCCCT-CCCCCACGGA
G-----CGGAGCGGGATCCTTCCCCGCCCCACCT------CCCGGC-----CCCGGCCGCCACCCTCCCTTTTCTTT-CC
GAGCTCCAACCAAATTCCCTCGCCCTGCCGCCGCTGCCGCCGCGGCCTAGGCCTTGACTCTTCTCCACGACGCCGCGCCC
TCTCCCCCACTGTCTTTTGACCGCTCCAAGCT--CTTTCTTGCTTCTCTTCCCCCCCTGATCGCGGCTAGCCAT------
GGGGTTACGAGGGACACAGCGCCTGCTTTGAACGCAGCTGTT----CGTCCGGCAAAGACACGGCACCCGCTGCCGCATC
ATAACCGCCGGCCTGCCCTTTCTGCTCCATCTGGGAAGTTAGCTCCTCCCGAAATTCCC-TCTTTCGCTACCCCTGGGAA
AAGGGGAGGAAAAGGCGCCATCTTTTCCGATCCCAGCTTCAGG-----GA-CACACCATCTTCCCCTGATCGCTCACGCG
GTAGGCTTCCGGCTTCGAGAAT----------------------CGAGTGGAATTAAAGCTCTGGTGAACCGGTTTTGAG
CTTAAGGGGCAGATCCCCGCGCCGGAGGGG------------------GATCTTCTCGCC--------GACAGAGTCAGA
CGGTCTCGGTCCAACTGC-CCCCTGCCTCTGCATAAGCTCTGTT-CCAGCTTTGTGGTTCCGTCCTTCCCTGCTCTGCTG
CGGCCTCGATGGACAGCCTCCCCGACGGGGCGGCGCCGCCCGCGCCGACGCCGCAGCAGCAGCAGCCGAAGCGCGACGAG
TGGAGCGAGAGCGGCATCTCGCGCCTGCTCGAGGCCTACGAGGCCAAGTGGCTGCTCCGCAACCGGGCCAAGCTCAAGTG
GAGCGACTGGGTCGACATCGCCCACGACGTCTCCGCCCACTGCTCCTCCTCCGACCACGCGGCCTCCAAGCCCGGCGCCG
CTGCCGGGGGCACCGCCAAGACCCCCAACCAGTGCAAGAACAAGGTCGAGTCCATGAAGAAGCGCTACCGGGCCGAGTCC
GCCGCCGCAACGCGGGCCGGATCAGCTGGGGTGGCCAGCGCCTCCGGTGGCCCGTCCTGGCGCTTCTTCGGCCGCATGGA
CGGGCTGCTCAAGGGCCCGGCCGCCGGCTGCTCTGGCCAGCCGCAGGCGCAACCGGAGCCGAGCTACGATGGCATCGTCC
AGCCGCGAGCCCCCCTGAAAGCAGAGCCAGAGGTCGACGCCGAAGCAGACACCGCCCTCCAGCAGCCGCCGGACACAGCA
GGGCCGCCCGGGGCGCTCTCCGAGCTACTGAGCGCAGACGCCAACGGCTCCGCGACGGTGAAGGCCGAGAAGACCGTCGA
TCTGGCCACGCACAAGGAGAGCGGCAGGGCGGCTGACAGCGACGCCGCAAATGTGAGCTCTCCGCGGAGCAAGGAGGTGG
AGGTGGGGGTGAACGACGACGGCGCCGAGGAGGTGGACA------CGCCGAGAAAGAGGAAGAGCCCGGAGCTGGACGTC
GCGAGGAGCATCGAGCTGCTGGCGAGCTCGTTCGTGAAGATCGAGCGGGCCAGGCTGGAGGTGTACCGGGACACGGAGCG
GATGAGGGCCGAGGCCGAGGTGAAGAAGGGCGAGATGGAGCTGAGGAGGACGGAGATCATGGCCAAGACGCAGCTGCAGA
TCGCCAGGCTCTTCGCCAAGCGGCTCAAGGAGTGCGTAGGCAGCAGGAATGGCGGCAGCTCGTCTCAAGCGGACACGCTT
GCCAAGAAAGGCGAAAATGGTTAGTCCCAACTTA-----------CATCCAACTTACCAGTAAGATTGCAGCCGCACTGA
TTATATTCAGTGCTGCAAGAACATCCTAAGTAGTGTATGGTGTGAAGTATGGATATGCAGAAGTGCATTTCGGGCTTCAT
CTTACACTCTATCGCTGTCAGTCAATTGCCGCAATCATGCTATGGCTGGAGTTCCTTTTCTATCTGGTCCTGGAAAAACA
TCACTGATAGAATGGGAAATTGCAGCATGAGGTTATCCTTGCACTAATATGGTACTAGTAGCTACTAGGAACG-GAGGAT
CTCCGAATTCACTTTAATTTTTGCTTCAGATGTACC-----AAAGCAGCTT------------------TACTGTGATGG
TTAGGACACTTTATGAGCTTGACTGATACTGAAATACTGTACATTTCTGTGGAACGGCTGAACTTCTGAAGCCTTTCCTT
CCTATAAA-ACCTACCATCTCATTCTACAGCACTGTTCTACCATTTGGCTGAGGCTAAATGCTGTCCGCGGTGTGCTGCT
ATGTATGAC----TCCATTTGGGTTCTTTTCTTGGCAAACACAAAGAGAAAAACTACATGTGAGAACTAAAATCTTGGTA
TAAGAAGTAGCGTCAGCCCCTCTGCTAGAAGAACCCAATATTGGTGGTATTTTGAGTATCTGCTTACTGACATAAGTGCA
GACACGATACTAGGATCGGATTTTCTTAACTTGTAGGCAGCACGGCTTGA-----TTGTTAACATATAACGCAAGCTTGT
ACTTCCTTCGTTCCAAAATAGATGACCCAACTTTGTACTACTTTAGTACAAAGTTGGGTCATCTATTTTGGAACGGAGGC
AGTAATATTTAGTTCCATTGCAAGACTGTATAGTAGAATTCAGGAACTGTGGTAATGCAGGGG-CTAAACTATAATCTCC
TCGTTAAATGGATCACAGGTCTAGTGGTACTATATGCTATAAAAACCTCGACCCTGTGAGACGATGGACAGTTATAGAAC
TTAATCTTTGGATGATATGAACCTGCTGCCATGAGTCGCCTACCAGGGTCGACA----------CATACATTCTCAAAAT
TTAGGCGGGCTTATTTAGTTACAAGACCGATTTTCCTTTTATCTTATGAAAAGCAGCATGTTGTACGGTCTGCTGACATC
CTGACTCTCTTTTTTTTCTTTCGAACCGTGCACGGTGCAGGAGAACTGCATGTAACTTATCTTGTTTTCTC--------T
TCAGTTTTCAGTTCTCTTCTCACCATTTTGGCTTATGGGTTTCAGGTTCAGGGTGACTGGCCAATCAAAGC-------AG
CTATCATTCTCTTCCCTCGGCATCGCACAGGTTCTAAACACAAGGCCGGTAT--CACACCATTCATTTGCAAAAAATGTA
TGTCTGATTGATTCAGCCTCATCATGAGTGAAGGCATATAGT-TAGCGGTAAAAATCGAAACACAATAACGGAAGCGTCG
GTTCCCCTTTCCAGCAGGGTGTTAGAAGATGCAGTTTTACAATCAGCAGTAGTTTGCTAGTCCGAAAAATTGTCAACTTG
CATTCCTACTGAAAGTGTTTTACTGACAACCACTGTAAGATGCTGTGGTTCTCACTTCTCTCTCAGTGCTGGAAGCCGGA
TGCTTGAGGTGGTATGGTGTTTGTGTGGTCGTTGATAGTACGATTCATTCGTGTACTGA--ATGCATCATCCACGGCTAT
CTTTTCCATATATGTAATGTATGCATCATCCATGCTCTTACCTTTTTCCACGTACTGTATATGGCTT-AAAAAGTCATTT
TGTTTTGAAACTTTTCAGATATAAGGT---GACGGGGATTCATTTTTTT-GACACCCTTTTTGCCAAAAAAATAT----A
TCCATCTGCCAGTGTACCCGTGAAAAGCCCCCGATAATTTACCTCAGTAACATGACCATGT-------------------
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>chr5D_11
----------TCCCACCCAGCAAGGAGGAGGCAACCAACCACCACGGTTGGGGTTGAGGTTGGGGTTGGGGTCACCGC--
CCGCCCGCCCGCCGGACGCGCCAGCGACAGCGACGAATCAATCAATCCGCCTCGTTTTGCCGCCGGGCCGGGCCGCGCCG
CGCCGATCCGGTCAGCGCGCGCGTCACGCCCCACTCCCCC------GCCCCCGCCCCCTCTC------------------
--------CCCGTCGGCTATTGCGGTCCGACGCGGCGCGCGCCTCCAC-TCCCGCCCTCCCTCGCTGTCCGTGGCGGGCC
TACCTCACGCGGCCGGCAGTTGGCAACCGTGGCCGCGCGGGCAGGCGGGCCGAGTCCTCCCTCCCCCACTTTCCGCTCCC
ACCACCTCCTCCTCC-----------------------------------------------------------------
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-----------------------------------------------------------CTTTCCCCTT-CCCCCACGGA
GAGGAGAGGAGCGGGATCCTTCCCAACCCCACCT------CCCGGCCCCGGCCCGGCCGCCACCCTCCCTTTTCTTTTCC
GAGCTCGAATCAAGTCCCCTCGCCCTGCCGCAGCTGCCGCCGCGGCCTAGCCCTTGACTCTTCTCCACGACGCCCCGCTC
TCTCCCCCGCTGCCTTTTGAGCCTTTTGACCGCTCAAACTTGCTTCTCTG-CCCCCGTGATCGCGGCTAGCCATAGCCAT
GGGGTTATGAGTGACACAGCGCTTCCTTTGGACGCAGCTGTTCGTCCGTCCGGCAGCGGCACGGCACCCGCTGCCGCATC
ATAAC---------------------------------------------------------------------------
---------------CGCCATCTTTTCCGATCCCAGCTTCAGCTTCAGAGGCACACCATCTTCCCCTGATCGCTCACGCG
GCAGGCTTCCAGCTTCAGGGATCGAGTGAAGCTCTTCTTCTTCCCGAGCGGAATTAAAGCTCTGGTGCACCAGTTTTGGC
CTCAAGCGGCAGATCTTCTTCCCGGAGGGGAAGATAGTAGTCCACCGTGATCTTGTTGCC--------CACAGAGTCACA
CGGTCTGTTCCCCTGC------------CTACCTAAGCTCTGTT-CCAGTTTTGGGGCTCCGT------CTGCTCTGCTG
CGGCGCCCATGGACGGCCTTCCCGACGGGGCGGCGCCGCCCGCGCCCACGCCGCCGCAGCAGCAGCCGAAGCGGGACGAG
TGGAGCGAGAGCGGCATCTCGCGCCTGCTCGAGGCCTACGAGGCAAAGTGGCTGCTCCGCAACCGGGCCAAGCTCAAGTG
GAGCGACTGGGTCGACATCGCCCACGACGTCTCCGCCCACTGCTCCTCCTCCGAGTCCGCGGCCTCCAAGCCCGGCGCCG
CTGCCGGGGGCACCGCCAAGACCCCCAACCAGTGCAAGAACAAGGTCGAGTCCATGAAGAAGCGCTACCGGGCCGAGTCC
GCCGCCGCAACGCGCGCCGGAGTAGCCGGGGCAGCCAGCGCCTCCGGTGGCCCGTCGTGGCGCTTCTTCGGCCGCATGGA
CGGGCTGCTCAAGGGGCCGGCCGCCGGCTGCTCTGGCCAGCCGCAGGCGCAACCGGAGCCGAGTTACGATGGCATGGTCC
AGCCGCGAGCCCCGCTGAAAGCAGAGCCGGAGGTCGACGCCGAAGCAGACACCGCCCTCCAGCAGCCACCGGACACAGCA
GGGCCGCCCGGCGCGCTCTCCGAGCTACTCAACGCAGACGCCAACGGCTCCGCAACGGTGAAGGCCGAGAAGATCGTCGA
TCTGGCCACGCACAAGGAGAGCAGCAGGGCGGCTGACAGCGACGCCGCAAATGTGAGCTCTCCGCGGAGCAAGGAGGTGG
AGGTGGAGGCGAACGATGACGGCGCCGAGGAGGTGGACA------CGCTGAGAAAGAGGAAGAGCCCGGAGCTGGACGTC
GCGAGGAGCATCGAGCTGCTGGCGAGCTCGTTCCTGAAGATCGAGCGGGCCAGGCTGGAGGTGTACCGGGACACGGAGAG
GATGCGGGCCGAGGCAGAGGTGAAGAAGGGCGAGATGGAGCTGAGGAGGACGGAGATCATGGCCAAGACGCAGTTGCAGA
TCGCCAGGCTCTTCGCCAAGCGGCTCAAGGAGTGCGTCGGCGGT---AATGGTGGCAGCTCGTCTCAAGTGGACACCCTT
GCCAAGAAAGGCGAAAATGGTTAGTCCCAACTTA-----------C-----------CAGTAAGATTG--------CTGT
TCATATTCAGTGCTGCAAGAACATCCTAAATAG----TGGTGTGAAGTATGGATATGTAGAAGTGCATTTCCGGCTTCAT
CTTACACTCTATCGCTGTCAGTTAATTACTGCAATCATGCTATGTCTGGAGTTCCTTTTCTATCTATTTCTGGAAAATCA
TCATTTAGAGAATAGGAAATTGCAGCATGAGGATATCCTTGCACTAATATGGTAA------CTACTAGGAACAAGATGAT
CTCTGAATTCACTTTAGTTTTTGCTTCAATGG-----TACTAAAGGAGCTTTTCATTCTGTACTACTAGTACTGTGATGG
CTCAGACACTTTCTGAGCTTGACTGAACTGAAA------TACATTTCTGTGGAACGGCTGAACTTTTGAAGCCTTTCCTT
CCTATCGAGACCTACCATCTCATTCTACAGCGCTGTTCTACCATTTGGCTGAGGCTGAATGTTGTCCGCCGTGTGTTGCT
ATGTATGAC----TCCATTCGGGTTATTTTATTGGCAAAAGCAAAGAGAAAAACCGCATGTCAGAACTAAAATCTTGGCA
TAAGTAGTGTCA----CCCCTCTGCTAGAAGAGGGT----------GTATTTTGAGCATCGT-TCACTGACATAAACGCA
AACACGGTACCGGGATCGGATGTTCTTAACTTGTAGGCAGCAGAAGGCTTGATTCTTGTTGACATATAATGCATGCTCTG
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---AATGTTTAGTTCCATTGCAAGACTGTATAGTGGAATTCAGGTACTGTGGTAACGCAGGGG-CCAAAATATAATCTCC
GCATTAAAGCGATCCGAGGTCTCGCGGTACTATGCTATGGGGGTCA-----------------ATGGACAATTATGGAAC
TTAATCCTCGTATGATACGAACCTGCTGCGAGGAGTCGACTAGGTGTTGCTTCGACTTTGTTAGCATACATTCTCAAAAT
TTAGGCGTGCTTGTTTAGTTCCAAGACAGATTTTCATTTTATCATATGAAAAGCAGCATCTTGTACGGTCTGCTGACATC
CTTACTCTTTTTCTCTTTGAAATCT----------TGCAGGAGAAGTGCATGTAACTCATCTTGTTTTGTACAGTACTAT
TTAGTTTTCAGTTCTCTTCTCACCAATTTGGCTTATGGGTTTCAGGTTCAGGGTGACTGGCCAATCAGAACACCTGTGAA
CTGTGATTCTCTTCCCCTGGCGTCGCG-----------------------------CTCCATTCATGTGCGGAAAATGTA
TGTC-GATTGATTTAGCCTCACCATGAGAGTGAAGGCATAGTGTAGCCATAAATATCGAAACGCAATAACGGAAGCGTCG
GTGCCCCTTTCCAGCAGGGTGTTAGAAGATGCAGTTTTACAATCAGGAGTAGTTTGCTAGTCCGAAAAATTGTCAACTTG
CATTCCTACTGAAACTGTTTTACTGACAACCATTGTAAGATGCTGTGG-------TTCTCTCGCAGTGCTGGAAGCCGGA
TGCTTCAGGTGGTATT---TTTGTGTGACTGTTGATGGTATGATCCATTCGTGTACTGTGTATGCATCATCCACGGCTAC
CTTTTCCATATATGTAATGTGTGCATCATCCATGCTCTAACCTTTTTCCATGTGCTGTACATGGCTTCAAAAGGTCATTT
TGTTTTGAAACTTTTCAGATATAAGGAGGCGACGGGGATTCCTATTTCTGGACACCCTTTTTGCCAAAAAAAAAATC---
-CCATCTGCCAGTGTACCCTTGAAAGCCCCC-AATACTTTAG--------------------------------------
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------------------------
>SNPs
------------------------------------------------------------------------SSSS--SS
-------------------------------------------S------------------------------------
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----------------------------------S-------------S-------------------------------
--------------------------------------------------S--------S-------S------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------S----------
-----------S----------------------SSSSSS----------------------------------------
--------------------------------------------------------------------------------
-----------------------------S--SS----------------------S-----------------------
--------------------------------SS----------------------------------------------
-----------------------------------------------------------S-------SS--------S--
-----S-------------------------------------SSSS-------------S-------------------
------S-----------S---S---SS---------------------S-----S-S----------------------
---------------------------S--------------------------------SSSSSSSS------------
------------------S-------------S-------S--SS-----------------S-----------------
---------------------------S----S----SS-SS--S-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
--------S-----------------------------------------------------------------------
----------------------------------------------------------------S---------------
----------S----------------------S------------------------------------------S---
--------------------------------------------------------S-----------------------
--S-----------------S------------S----------------------------------------------
---S-----------------------------SSSSSSSSSSSS--SS---S---S-----S----S------------
--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
-------------------------------------------------S------------------------------
-------------------------S--------SSSSSSSSSSS-----------------------------------
--------------------S----------S-------------SS-----S-----S---------------------
---------------------------------------------S-----S-S--------------------------
------------------------------------S-------S---------------------------------S-
-----S--------S---S-----------S---SSS-------------------------S-----------------
--------------------------------------------------------------------------------
----------------S--------------------------------S-S----------------------------
---------SSSS---------------------------------S--------------S------------------
---S---------SSSSS--------------------------------------------------------------
-----------------S------------------------------------S-------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
--------S-----------------------------------------------------------------------
--------------------------------------S-----------------------------------------
--------------------S------S---------------------------S------------------------
--------------------------------------------------------------------------------
----------------------S------------S--------------------------------------------
S----------S----------S-----SS----------S-----------SS--------------------------
-----------------S-----------------------------------S-------S--------------SS-S
--------------------------------------------------------------------S-----------
---------------------S--------SS------------------------------------------------
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
------S-----------------------------------------S--SS---------------S------SSSS-
--------------------S--------------------------S-------S-----SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_1405
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-------------------------CCTCTGCTTAAGCTCGGTCC-----------------------------------
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>reverse_2619
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------GGAAGTGCATTTCCGGCTTC--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>forward_2083
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------GCCGAGAAGACCGTCGA
TCA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>reverse_3796
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------CGGGTTTCAGGTTCAGGGTG-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>forward_3010
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------CGCTGTTCTACCATTTGGCC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>reverse_4787
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------GGGCTCTAGTTTGG
GCCATT------------------
