Multiple sequence alignment - TraesCS5B01G362200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G362200 chr5B 100.000 2633 0 0 1 2633 541615238 541617870 0.000000e+00 4863.0
1 TraesCS5B01G362200 chr5D 88.009 2160 124 54 561 2633 444727213 444729324 0.000000e+00 2429.0
2 TraesCS5B01G362200 chr5D 97.297 37 1 0 481 517 444727099 444727135 2.190000e-06 63.9
3 TraesCS5B01G362200 chr5A 90.075 1471 78 34 1194 2633 561660054 561661487 0.000000e+00 1845.0
4 TraesCS5B01G362200 chr5A 83.259 669 67 31 517 1165 561659410 561660053 8.170000e-160 573.0
5 TraesCS5B01G362200 chr7A 89.583 48 3 2 1012 1058 252195111 252195157 2.830000e-05 60.2
6 TraesCS5B01G362200 chr2D 100.000 29 0 0 1021 1049 180926500 180926528 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G362200 chr5B 541615238 541617870 2632 False 4863.00 4863 100.000 1 2633 1 chr5B.!!$F1 2632
1 TraesCS5B01G362200 chr5D 444727099 444729324 2225 False 1246.45 2429 92.653 481 2633 2 chr5D.!!$F1 2152
2 TraesCS5B01G362200 chr5A 561659410 561661487 2077 False 1209.00 1845 86.667 517 2633 2 chr5A.!!$F1 2116

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.036294 GGCTCTAGTTGCTTTCCGGT 60.036 55.0 0.00 0.00 0.00 5.28 F
238 239 0.036483 TGCGGCTTGCTAATCTGTCA 60.036 50.0 0.00 0.00 46.63 3.58 F
333 334 0.038159 CTTGTGGACACCTCTCGACC 60.038 60.0 0.00 0.00 0.00 4.79 F
416 417 0.038251 ATTTGTCGTCTCTGAGCGCA 60.038 50.0 11.47 12.44 0.00 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1484 1586 0.034616 GAGATCGAAGATGCCAGGGG 59.965 60.000 0.00 0.0 45.12 4.79 R
1485 1587 0.319383 CGAGATCGAAGATGCCAGGG 60.319 60.000 0.00 0.0 45.12 4.45 R
1487 1589 0.943359 GCCGAGATCGAAGATGCCAG 60.943 60.000 3.31 0.0 45.12 4.85 R
2348 2489 1.066787 GCTCAAGAAGCCTACCGAGTT 60.067 52.381 0.00 0.0 45.92 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.464157 GACACTTGGCTCTAGTTGCT 57.536 50.000 9.54 0.00 0.00 3.91
20 21 2.772287 GACACTTGGCTCTAGTTGCTT 58.228 47.619 9.54 0.00 0.00 3.91
21 22 3.142174 GACACTTGGCTCTAGTTGCTTT 58.858 45.455 9.54 0.00 0.00 3.51
22 23 3.142174 ACACTTGGCTCTAGTTGCTTTC 58.858 45.455 9.54 0.00 0.00 2.62
23 24 2.485814 CACTTGGCTCTAGTTGCTTTCC 59.514 50.000 9.54 0.00 0.00 3.13
24 25 1.734465 CTTGGCTCTAGTTGCTTTCCG 59.266 52.381 9.54 0.00 0.00 4.30
25 26 0.036388 TGGCTCTAGTTGCTTTCCGG 60.036 55.000 0.00 0.00 0.00 5.14
26 27 0.036294 GGCTCTAGTTGCTTTCCGGT 60.036 55.000 0.00 0.00 0.00 5.28
27 28 1.610886 GGCTCTAGTTGCTTTCCGGTT 60.611 52.381 0.00 0.00 0.00 4.44
28 29 1.464997 GCTCTAGTTGCTTTCCGGTTG 59.535 52.381 0.00 0.00 0.00 3.77
29 30 2.076863 CTCTAGTTGCTTTCCGGTTGG 58.923 52.381 0.00 0.00 0.00 3.77
30 31 1.418637 TCTAGTTGCTTTCCGGTTGGT 59.581 47.619 0.00 0.00 36.30 3.67
31 32 2.158726 TCTAGTTGCTTTCCGGTTGGTT 60.159 45.455 0.00 0.00 36.30 3.67
32 33 0.744281 AGTTGCTTTCCGGTTGGTTG 59.256 50.000 0.00 0.00 36.30 3.77
33 34 0.741915 GTTGCTTTCCGGTTGGTTGA 59.258 50.000 0.00 0.00 36.30 3.18
34 35 1.028905 TTGCTTTCCGGTTGGTTGAG 58.971 50.000 0.00 0.00 36.30 3.02
35 36 1.285950 GCTTTCCGGTTGGTTGAGC 59.714 57.895 0.00 0.00 36.30 4.26
36 37 1.172812 GCTTTCCGGTTGGTTGAGCT 61.173 55.000 0.00 0.00 34.75 4.09
37 38 1.318576 CTTTCCGGTTGGTTGAGCTT 58.681 50.000 0.00 0.00 36.30 3.74
38 39 1.681264 CTTTCCGGTTGGTTGAGCTTT 59.319 47.619 0.00 0.00 36.30 3.51
39 40 1.314730 TTCCGGTTGGTTGAGCTTTC 58.685 50.000 0.00 0.00 36.30 2.62
40 41 0.181587 TCCGGTTGGTTGAGCTTTCA 59.818 50.000 0.00 0.00 36.30 2.69
41 42 1.202879 TCCGGTTGGTTGAGCTTTCAT 60.203 47.619 0.00 0.00 36.30 2.57
42 43 1.200020 CCGGTTGGTTGAGCTTTCATC 59.800 52.381 0.00 0.00 0.00 2.92
43 44 1.200020 CGGTTGGTTGAGCTTTCATCC 59.800 52.381 0.00 0.00 0.00 3.51
44 45 2.519013 GGTTGGTTGAGCTTTCATCCT 58.481 47.619 0.00 0.00 32.26 3.24
45 46 2.229784 GGTTGGTTGAGCTTTCATCCTG 59.770 50.000 0.00 0.00 32.26 3.86
46 47 1.538047 TGGTTGAGCTTTCATCCTGC 58.462 50.000 0.00 0.00 32.26 4.85
47 48 0.813821 GGTTGAGCTTTCATCCTGCC 59.186 55.000 0.00 0.00 0.00 4.85
48 49 1.615384 GGTTGAGCTTTCATCCTGCCT 60.615 52.381 0.00 0.00 0.00 4.75
49 50 2.165998 GTTGAGCTTTCATCCTGCCTT 58.834 47.619 0.00 0.00 0.00 4.35
50 51 1.830279 TGAGCTTTCATCCTGCCTTG 58.170 50.000 0.00 0.00 0.00 3.61
51 52 1.074405 TGAGCTTTCATCCTGCCTTGT 59.926 47.619 0.00 0.00 0.00 3.16
52 53 2.305635 TGAGCTTTCATCCTGCCTTGTA 59.694 45.455 0.00 0.00 0.00 2.41
53 54 2.680339 GAGCTTTCATCCTGCCTTGTAC 59.320 50.000 0.00 0.00 0.00 2.90
54 55 2.040278 AGCTTTCATCCTGCCTTGTACA 59.960 45.455 0.00 0.00 0.00 2.90
55 56 2.162408 GCTTTCATCCTGCCTTGTACAC 59.838 50.000 0.00 0.00 0.00 2.90
56 57 2.489938 TTCATCCTGCCTTGTACACC 57.510 50.000 0.00 0.00 0.00 4.16
57 58 1.357137 TCATCCTGCCTTGTACACCA 58.643 50.000 0.00 0.00 0.00 4.17
58 59 1.915489 TCATCCTGCCTTGTACACCAT 59.085 47.619 0.00 0.00 0.00 3.55
59 60 2.308570 TCATCCTGCCTTGTACACCATT 59.691 45.455 0.00 0.00 0.00 3.16
60 61 2.198827 TCCTGCCTTGTACACCATTG 57.801 50.000 0.00 0.00 0.00 2.82
61 62 0.527565 CCTGCCTTGTACACCATTGC 59.472 55.000 0.00 0.00 0.00 3.56
62 63 1.538047 CTGCCTTGTACACCATTGCT 58.462 50.000 0.00 0.00 0.00 3.91
63 64 1.470098 CTGCCTTGTACACCATTGCTC 59.530 52.381 0.00 0.00 0.00 4.26
64 65 0.811281 GCCTTGTACACCATTGCTCC 59.189 55.000 0.00 0.00 0.00 4.70
65 66 1.886222 GCCTTGTACACCATTGCTCCA 60.886 52.381 0.00 0.00 0.00 3.86
66 67 2.513753 CCTTGTACACCATTGCTCCAA 58.486 47.619 0.00 0.00 0.00 3.53
67 68 2.489329 CCTTGTACACCATTGCTCCAAG 59.511 50.000 0.00 0.00 0.00 3.61
68 69 2.198827 TGTACACCATTGCTCCAAGG 57.801 50.000 0.00 0.00 0.00 3.61
69 70 0.811281 GTACACCATTGCTCCAAGGC 59.189 55.000 0.00 0.00 0.00 4.35
70 71 0.323360 TACACCATTGCTCCAAGGCC 60.323 55.000 0.00 0.00 0.00 5.19
71 72 1.304713 CACCATTGCTCCAAGGCCT 60.305 57.895 0.00 0.00 0.00 5.19
72 73 1.000396 ACCATTGCTCCAAGGCCTC 60.000 57.895 5.23 0.00 0.00 4.70
73 74 2.117156 CCATTGCTCCAAGGCCTCG 61.117 63.158 5.23 0.00 0.00 4.63
74 75 1.377725 CATTGCTCCAAGGCCTCGT 60.378 57.895 5.23 0.00 0.00 4.18
75 76 1.377725 ATTGCTCCAAGGCCTCGTG 60.378 57.895 5.23 0.16 0.00 4.35
76 77 2.129555 ATTGCTCCAAGGCCTCGTGT 62.130 55.000 5.23 0.00 0.00 4.49
77 78 2.032681 GCTCCAAGGCCTCGTGTT 59.967 61.111 5.23 0.00 0.00 3.32
78 79 2.328099 GCTCCAAGGCCTCGTGTTG 61.328 63.158 5.23 0.00 0.00 3.33
79 80 1.071471 CTCCAAGGCCTCGTGTTGT 59.929 57.895 5.23 0.00 0.00 3.32
80 81 0.951040 CTCCAAGGCCTCGTGTTGTC 60.951 60.000 5.23 0.00 0.00 3.18
81 82 2.317609 CCAAGGCCTCGTGTTGTCG 61.318 63.158 5.23 0.00 0.00 4.35
82 83 2.030562 AAGGCCTCGTGTTGTCGG 59.969 61.111 5.23 0.00 0.00 4.79
83 84 2.803817 AAGGCCTCGTGTTGTCGGT 61.804 57.895 5.23 0.00 0.00 4.69
84 85 2.989055 AAGGCCTCGTGTTGTCGGTG 62.989 60.000 5.23 0.00 0.00 4.94
85 86 3.712881 GCCTCGTGTTGTCGGTGC 61.713 66.667 0.00 0.00 0.00 5.01
86 87 2.029073 CCTCGTGTTGTCGGTGCT 59.971 61.111 0.00 0.00 0.00 4.40
87 88 2.022129 CCTCGTGTTGTCGGTGCTC 61.022 63.158 0.00 0.00 0.00 4.26
88 89 1.299850 CTCGTGTTGTCGGTGCTCA 60.300 57.895 0.00 0.00 0.00 4.26
89 90 0.874175 CTCGTGTTGTCGGTGCTCAA 60.874 55.000 0.00 0.00 0.00 3.02
90 91 0.874175 TCGTGTTGTCGGTGCTCAAG 60.874 55.000 0.00 0.00 0.00 3.02
91 92 1.279840 GTGTTGTCGGTGCTCAAGC 59.720 57.895 0.00 0.00 42.50 4.01
92 93 1.146041 TGTTGTCGGTGCTCAAGCT 59.854 52.632 3.32 0.00 42.66 3.74
93 94 0.880278 TGTTGTCGGTGCTCAAGCTC 60.880 55.000 3.32 0.00 42.66 4.09
99 100 2.753029 GTGCTCAAGCTCCACCCT 59.247 61.111 3.32 0.00 42.66 4.34
100 101 1.073897 GTGCTCAAGCTCCACCCTT 59.926 57.895 3.32 0.00 42.66 3.95
101 102 0.957888 GTGCTCAAGCTCCACCCTTC 60.958 60.000 3.32 0.00 42.66 3.46
102 103 1.377856 GCTCAAGCTCCACCCTTCC 60.378 63.158 0.00 0.00 38.21 3.46
103 104 1.078848 CTCAAGCTCCACCCTTCCG 60.079 63.158 0.00 0.00 0.00 4.30
104 105 2.045926 CAAGCTCCACCCTTCCGG 60.046 66.667 0.00 0.00 37.81 5.14
106 107 2.593956 AAGCTCCACCCTTCCGGTC 61.594 63.158 0.00 0.00 43.58 4.79
107 108 3.319198 GCTCCACCCTTCCGGTCA 61.319 66.667 0.00 0.00 43.58 4.02
108 109 2.670148 GCTCCACCCTTCCGGTCAT 61.670 63.158 0.00 0.00 43.58 3.06
109 110 1.991230 CTCCACCCTTCCGGTCATT 59.009 57.895 0.00 0.00 43.58 2.57
110 111 0.328258 CTCCACCCTTCCGGTCATTT 59.672 55.000 0.00 0.00 43.58 2.32
111 112 0.037590 TCCACCCTTCCGGTCATTTG 59.962 55.000 0.00 0.00 43.58 2.32
112 113 1.595093 CCACCCTTCCGGTCATTTGC 61.595 60.000 0.00 0.00 43.58 3.68
113 114 1.304134 ACCCTTCCGGTCATTTGCC 60.304 57.895 0.00 0.00 43.58 4.52
114 115 2.052104 CCCTTCCGGTCATTTGCCC 61.052 63.158 0.00 0.00 0.00 5.36
115 116 2.052104 CCTTCCGGTCATTTGCCCC 61.052 63.158 0.00 0.00 0.00 5.80
116 117 1.304052 CTTCCGGTCATTTGCCCCA 60.304 57.895 0.00 0.00 0.00 4.96
117 118 0.684153 CTTCCGGTCATTTGCCCCAT 60.684 55.000 0.00 0.00 0.00 4.00
118 119 0.682855 TTCCGGTCATTTGCCCCATC 60.683 55.000 0.00 0.00 0.00 3.51
119 120 2.480610 CCGGTCATTTGCCCCATCG 61.481 63.158 0.00 0.00 0.00 3.84
120 121 2.807622 GGTCATTTGCCCCATCGC 59.192 61.111 0.00 0.00 0.00 4.58
121 122 2.051518 GGTCATTTGCCCCATCGCA 61.052 57.895 0.00 0.00 36.85 5.10
122 123 1.603236 GGTCATTTGCCCCATCGCAA 61.603 55.000 0.00 0.00 46.72 4.85
126 127 4.430721 TTGCCCCATCGCAAATCA 57.569 50.000 0.00 0.00 45.46 2.57
127 128 2.663566 TTGCCCCATCGCAAATCAA 58.336 47.368 0.00 0.00 45.46 2.57
128 129 0.972134 TTGCCCCATCGCAAATCAAA 59.028 45.000 0.00 0.00 45.46 2.69
129 130 0.246086 TGCCCCATCGCAAATCAAAC 59.754 50.000 0.00 0.00 35.32 2.93
130 131 0.246086 GCCCCATCGCAAATCAAACA 59.754 50.000 0.00 0.00 0.00 2.83
131 132 1.134729 GCCCCATCGCAAATCAAACAT 60.135 47.619 0.00 0.00 0.00 2.71
132 133 2.542597 CCCCATCGCAAATCAAACATG 58.457 47.619 0.00 0.00 0.00 3.21
133 134 2.094078 CCCCATCGCAAATCAAACATGT 60.094 45.455 0.00 0.00 0.00 3.21
134 135 3.587923 CCCATCGCAAATCAAACATGTT 58.412 40.909 4.92 4.92 0.00 2.71
135 136 3.995705 CCCATCGCAAATCAAACATGTTT 59.004 39.130 18.13 18.13 0.00 2.83
136 137 4.451774 CCCATCGCAAATCAAACATGTTTT 59.548 37.500 21.10 5.36 0.00 2.43
137 138 5.375717 CCATCGCAAATCAAACATGTTTTG 58.624 37.500 21.10 16.97 33.81 2.44
138 139 4.449870 TCGCAAATCAAACATGTTTTGC 57.550 36.364 25.52 25.52 44.51 3.68
139 140 3.867493 TCGCAAATCAAACATGTTTTGCA 59.133 34.783 30.44 20.62 46.49 4.08
140 141 4.330894 TCGCAAATCAAACATGTTTTGCAA 59.669 33.333 30.44 19.07 46.49 4.08
141 142 5.026462 CGCAAATCAAACATGTTTTGCAAA 58.974 33.333 30.44 8.05 46.49 3.68
142 143 5.169915 CGCAAATCAAACATGTTTTGCAAAG 59.830 36.000 30.44 18.49 46.49 2.77
143 144 6.256686 GCAAATCAAACATGTTTTGCAAAGA 58.743 32.000 28.36 19.48 45.94 2.52
144 145 6.195060 GCAAATCAAACATGTTTTGCAAAGAC 59.805 34.615 28.36 13.37 45.94 3.01
145 146 6.981762 AATCAAACATGTTTTGCAAAGACA 57.018 29.167 21.10 21.27 0.00 3.41
146 147 5.776519 TCAAACATGTTTTGCAAAGACAC 57.223 34.783 21.10 14.65 0.00 3.67
147 148 5.233225 TCAAACATGTTTTGCAAAGACACA 58.767 33.333 21.10 18.75 0.00 3.72
148 149 5.119898 TCAAACATGTTTTGCAAAGACACAC 59.880 36.000 21.10 14.06 0.00 3.82
149 150 3.520569 ACATGTTTTGCAAAGACACACC 58.479 40.909 21.38 5.35 0.00 4.16
150 151 2.663826 TGTTTTGCAAAGACACACCC 57.336 45.000 12.41 0.00 0.00 4.61
151 152 2.175202 TGTTTTGCAAAGACACACCCT 58.825 42.857 12.41 0.00 0.00 4.34
152 153 3.357203 TGTTTTGCAAAGACACACCCTA 58.643 40.909 12.41 0.00 0.00 3.53
153 154 3.380004 TGTTTTGCAAAGACACACCCTAG 59.620 43.478 12.41 0.00 0.00 3.02
154 155 1.604604 TTGCAAAGACACACCCTAGC 58.395 50.000 0.00 0.00 0.00 3.42
155 156 0.472044 TGCAAAGACACACCCTAGCA 59.528 50.000 0.00 0.00 0.00 3.49
156 157 1.073763 TGCAAAGACACACCCTAGCAT 59.926 47.619 0.00 0.00 0.00 3.79
157 158 2.162681 GCAAAGACACACCCTAGCATT 58.837 47.619 0.00 0.00 0.00 3.56
158 159 3.244735 TGCAAAGACACACCCTAGCATTA 60.245 43.478 0.00 0.00 0.00 1.90
159 160 3.375299 GCAAAGACACACCCTAGCATTAG 59.625 47.826 0.00 0.00 0.00 1.73
160 161 3.914426 AAGACACACCCTAGCATTAGG 57.086 47.619 0.00 0.00 45.23 2.69
161 162 2.834113 AGACACACCCTAGCATTAGGT 58.166 47.619 0.00 0.00 44.32 3.08
162 163 2.501723 AGACACACCCTAGCATTAGGTG 59.498 50.000 12.12 12.12 44.32 4.00
163 164 2.236395 GACACACCCTAGCATTAGGTGT 59.764 50.000 13.24 13.24 44.32 4.16
164 165 2.642807 ACACACCCTAGCATTAGGTGTT 59.357 45.455 15.63 7.29 44.32 3.32
165 166 3.009723 CACACCCTAGCATTAGGTGTTG 58.990 50.000 15.63 9.42 44.32 3.33
166 167 2.026262 ACACCCTAGCATTAGGTGTTGG 60.026 50.000 13.24 0.00 44.32 3.77
167 168 2.238646 CACCCTAGCATTAGGTGTTGGA 59.761 50.000 6.88 0.00 44.32 3.53
168 169 3.117888 CACCCTAGCATTAGGTGTTGGAT 60.118 47.826 6.88 0.00 44.32 3.41
169 170 4.102524 CACCCTAGCATTAGGTGTTGGATA 59.897 45.833 6.88 0.00 44.32 2.59
170 171 4.348168 ACCCTAGCATTAGGTGTTGGATAG 59.652 45.833 0.00 0.00 44.32 2.08
171 172 4.348168 CCCTAGCATTAGGTGTTGGATAGT 59.652 45.833 0.00 0.00 44.32 2.12
172 173 5.163195 CCCTAGCATTAGGTGTTGGATAGTT 60.163 44.000 0.00 0.00 44.32 2.24
173 174 6.357367 CCTAGCATTAGGTGTTGGATAGTTT 58.643 40.000 0.00 0.00 41.42 2.66
174 175 6.483640 CCTAGCATTAGGTGTTGGATAGTTTC 59.516 42.308 0.00 0.00 41.42 2.78
175 176 5.815581 AGCATTAGGTGTTGGATAGTTTCA 58.184 37.500 0.00 0.00 0.00 2.69
176 177 6.426587 AGCATTAGGTGTTGGATAGTTTCAT 58.573 36.000 0.00 0.00 0.00 2.57
177 178 6.543831 AGCATTAGGTGTTGGATAGTTTCATC 59.456 38.462 0.00 0.00 0.00 2.92
178 179 6.238759 GCATTAGGTGTTGGATAGTTTCATCC 60.239 42.308 0.00 0.00 44.21 3.51
179 180 6.636454 TTAGGTGTTGGATAGTTTCATCCT 57.364 37.500 3.94 0.00 44.26 3.24
180 181 4.848357 AGGTGTTGGATAGTTTCATCCTG 58.152 43.478 3.94 0.00 44.26 3.86
181 182 4.289672 AGGTGTTGGATAGTTTCATCCTGT 59.710 41.667 3.94 0.00 44.26 4.00
182 183 5.010282 GGTGTTGGATAGTTTCATCCTGTT 58.990 41.667 3.94 0.00 44.26 3.16
183 184 5.106157 GGTGTTGGATAGTTTCATCCTGTTG 60.106 44.000 3.94 0.00 44.26 3.33
184 185 5.009631 TGTTGGATAGTTTCATCCTGTTGG 58.990 41.667 3.94 0.00 44.26 3.77
185 186 4.927267 TGGATAGTTTCATCCTGTTGGT 57.073 40.909 3.94 0.00 44.26 3.67
186 187 5.255397 TGGATAGTTTCATCCTGTTGGTT 57.745 39.130 3.94 0.00 44.26 3.67
187 188 5.009631 TGGATAGTTTCATCCTGTTGGTTG 58.990 41.667 3.94 0.00 44.26 3.77
188 189 4.142381 GGATAGTTTCATCCTGTTGGTTGC 60.142 45.833 0.00 0.00 41.24 4.17
189 190 2.665165 AGTTTCATCCTGTTGGTTGCA 58.335 42.857 0.00 0.00 34.03 4.08
190 191 2.362077 AGTTTCATCCTGTTGGTTGCAC 59.638 45.455 0.00 0.00 34.03 4.57
191 192 2.064434 TTCATCCTGTTGGTTGCACA 57.936 45.000 0.00 0.00 34.03 4.57
192 193 2.291209 TCATCCTGTTGGTTGCACAT 57.709 45.000 0.00 0.00 34.03 3.21
193 194 3.431673 TCATCCTGTTGGTTGCACATA 57.568 42.857 0.00 0.00 34.03 2.29
194 195 3.346315 TCATCCTGTTGGTTGCACATAG 58.654 45.455 0.00 0.00 34.03 2.23
195 196 2.198827 TCCTGTTGGTTGCACATAGG 57.801 50.000 0.00 0.00 34.23 2.57
196 197 1.176527 CCTGTTGGTTGCACATAGGG 58.823 55.000 0.00 0.00 0.00 3.53
197 198 0.527565 CTGTTGGTTGCACATAGGGC 59.472 55.000 0.00 0.00 0.00 5.19
198 199 0.178978 TGTTGGTTGCACATAGGGCA 60.179 50.000 0.00 0.00 40.00 5.36
204 205 2.113860 TTGCACATAGGGCAAGAGTC 57.886 50.000 2.00 0.00 45.57 3.36
205 206 1.279496 TGCACATAGGGCAAGAGTCT 58.721 50.000 0.00 0.00 38.54 3.24
206 207 1.630369 TGCACATAGGGCAAGAGTCTT 59.370 47.619 0.00 0.00 38.54 3.01
207 208 2.012673 GCACATAGGGCAAGAGTCTTG 58.987 52.381 25.68 25.68 0.00 3.02
208 209 2.636830 CACATAGGGCAAGAGTCTTGG 58.363 52.381 29.45 16.46 0.00 3.61
209 210 2.026822 CACATAGGGCAAGAGTCTTGGT 60.027 50.000 29.45 17.03 0.00 3.67
210 211 2.026822 ACATAGGGCAAGAGTCTTGGTG 60.027 50.000 29.45 10.17 0.00 4.17
211 212 2.024176 TAGGGCAAGAGTCTTGGTGA 57.976 50.000 29.45 0.00 0.00 4.02
212 213 0.689623 AGGGCAAGAGTCTTGGTGAG 59.310 55.000 29.45 8.67 0.00 3.51
213 214 0.322008 GGGCAAGAGTCTTGGTGAGG 60.322 60.000 29.45 7.98 0.00 3.86
214 215 0.398318 GGCAAGAGTCTTGGTGAGGT 59.602 55.000 29.45 0.00 0.00 3.85
215 216 1.623811 GGCAAGAGTCTTGGTGAGGTA 59.376 52.381 29.45 0.00 0.00 3.08
216 217 2.354203 GGCAAGAGTCTTGGTGAGGTAG 60.354 54.545 29.45 5.94 0.00 3.18
217 218 2.933056 GCAAGAGTCTTGGTGAGGTAGC 60.933 54.545 29.45 11.76 0.00 3.58
218 219 1.562783 AGAGTCTTGGTGAGGTAGCC 58.437 55.000 0.00 0.00 0.00 3.93
219 220 1.077993 AGAGTCTTGGTGAGGTAGCCT 59.922 52.381 0.00 0.00 36.03 4.58
220 221 1.205893 GAGTCTTGGTGAGGTAGCCTG 59.794 57.143 0.00 0.00 31.76 4.85
221 222 0.391793 GTCTTGGTGAGGTAGCCTGC 60.392 60.000 0.00 0.00 31.76 4.85
222 223 1.448540 CTTGGTGAGGTAGCCTGCG 60.449 63.158 0.00 0.00 31.76 5.18
223 224 2.859273 CTTGGTGAGGTAGCCTGCGG 62.859 65.000 0.00 0.00 31.76 5.69
233 234 2.718107 GCCTGCGGCTTGCTAATC 59.282 61.111 11.61 0.00 46.69 1.75
234 235 1.821332 GCCTGCGGCTTGCTAATCT 60.821 57.895 11.61 0.00 46.69 2.40
235 236 2.020131 CCTGCGGCTTGCTAATCTG 58.980 57.895 0.00 0.00 46.63 2.90
236 237 0.745845 CCTGCGGCTTGCTAATCTGT 60.746 55.000 0.00 0.00 46.63 3.41
237 238 0.654683 CTGCGGCTTGCTAATCTGTC 59.345 55.000 0.00 0.00 46.63 3.51
238 239 0.036483 TGCGGCTTGCTAATCTGTCA 60.036 50.000 0.00 0.00 46.63 3.58
239 240 0.654683 GCGGCTTGCTAATCTGTCAG 59.345 55.000 0.00 0.00 41.73 3.51
240 241 1.740380 GCGGCTTGCTAATCTGTCAGA 60.740 52.381 4.68 4.68 41.73 3.27
241 242 1.929836 CGGCTTGCTAATCTGTCAGAC 59.070 52.381 4.21 0.00 0.00 3.51
242 243 1.929836 GGCTTGCTAATCTGTCAGACG 59.070 52.381 4.21 0.00 0.00 4.18
243 244 2.611518 GCTTGCTAATCTGTCAGACGT 58.388 47.619 4.21 0.00 0.00 4.34
244 245 2.600867 GCTTGCTAATCTGTCAGACGTC 59.399 50.000 7.70 7.70 0.00 4.34
245 246 2.941453 TGCTAATCTGTCAGACGTCC 57.059 50.000 13.01 0.00 0.00 4.79
246 247 2.167662 TGCTAATCTGTCAGACGTCCA 58.832 47.619 13.01 2.05 0.00 4.02
247 248 2.164422 TGCTAATCTGTCAGACGTCCAG 59.836 50.000 13.01 12.71 0.00 3.86
248 249 2.803451 CTAATCTGTCAGACGTCCAGC 58.197 52.381 13.01 2.82 0.00 4.85
249 250 0.969149 AATCTGTCAGACGTCCAGCA 59.031 50.000 13.01 7.61 0.00 4.41
250 251 0.969149 ATCTGTCAGACGTCCAGCAA 59.031 50.000 13.01 0.00 0.00 3.91
251 252 0.750249 TCTGTCAGACGTCCAGCAAA 59.250 50.000 13.01 0.00 0.00 3.68
252 253 1.344438 TCTGTCAGACGTCCAGCAAAT 59.656 47.619 13.01 0.00 0.00 2.32
253 254 1.462283 CTGTCAGACGTCCAGCAAATG 59.538 52.381 13.01 1.81 0.00 2.32
286 287 3.963428 AAGAAGCGACATCTTAGTGGT 57.037 42.857 0.00 0.00 35.43 4.16
287 288 3.238108 AGAAGCGACATCTTAGTGGTG 57.762 47.619 0.00 0.00 0.00 4.17
288 289 1.661112 GAAGCGACATCTTAGTGGTGC 59.339 52.381 0.00 0.00 0.00 5.01
289 290 0.898320 AGCGACATCTTAGTGGTGCT 59.102 50.000 0.00 0.00 0.00 4.40
290 291 1.276421 AGCGACATCTTAGTGGTGCTT 59.724 47.619 0.00 0.00 32.18 3.91
291 292 2.076863 GCGACATCTTAGTGGTGCTTT 58.923 47.619 0.00 0.00 0.00 3.51
292 293 2.159653 GCGACATCTTAGTGGTGCTTTG 60.160 50.000 0.00 0.00 0.00 2.77
293 294 2.416547 CGACATCTTAGTGGTGCTTTGG 59.583 50.000 0.00 0.00 0.00 3.28
294 295 2.749621 GACATCTTAGTGGTGCTTTGGG 59.250 50.000 0.00 0.00 0.00 4.12
295 296 2.108250 ACATCTTAGTGGTGCTTTGGGT 59.892 45.455 0.00 0.00 0.00 4.51
296 297 3.157087 CATCTTAGTGGTGCTTTGGGTT 58.843 45.455 0.00 0.00 0.00 4.11
297 298 3.306472 TCTTAGTGGTGCTTTGGGTTT 57.694 42.857 0.00 0.00 0.00 3.27
298 299 3.637769 TCTTAGTGGTGCTTTGGGTTTT 58.362 40.909 0.00 0.00 0.00 2.43
299 300 3.634910 TCTTAGTGGTGCTTTGGGTTTTC 59.365 43.478 0.00 0.00 0.00 2.29
300 301 1.859302 AGTGGTGCTTTGGGTTTTCA 58.141 45.000 0.00 0.00 0.00 2.69
301 302 2.183679 AGTGGTGCTTTGGGTTTTCAA 58.816 42.857 0.00 0.00 0.00 2.69
302 303 2.168313 AGTGGTGCTTTGGGTTTTCAAG 59.832 45.455 0.00 0.00 0.00 3.02
303 304 2.093711 GTGGTGCTTTGGGTTTTCAAGT 60.094 45.455 0.00 0.00 0.00 3.16
304 305 2.093764 TGGTGCTTTGGGTTTTCAAGTG 60.094 45.455 0.00 0.00 0.00 3.16
305 306 2.167487 GGTGCTTTGGGTTTTCAAGTGA 59.833 45.455 0.00 0.00 0.00 3.41
306 307 3.368948 GGTGCTTTGGGTTTTCAAGTGAA 60.369 43.478 0.00 0.00 0.00 3.18
307 308 4.441792 GTGCTTTGGGTTTTCAAGTGAAT 58.558 39.130 0.00 0.00 33.54 2.57
308 309 4.270808 GTGCTTTGGGTTTTCAAGTGAATG 59.729 41.667 0.00 0.00 33.54 2.67
309 310 3.248363 GCTTTGGGTTTTCAAGTGAATGC 59.752 43.478 0.00 0.00 33.54 3.56
310 311 3.467374 TTGGGTTTTCAAGTGAATGCC 57.533 42.857 0.00 0.95 33.54 4.40
311 312 1.339610 TGGGTTTTCAAGTGAATGCCG 59.660 47.619 0.00 0.00 33.54 5.69
312 313 1.339929 GGGTTTTCAAGTGAATGCCGT 59.660 47.619 0.00 0.00 33.54 5.68
313 314 2.223947 GGGTTTTCAAGTGAATGCCGTT 60.224 45.455 0.00 0.00 33.54 4.44
314 315 3.049912 GGTTTTCAAGTGAATGCCGTTC 58.950 45.455 0.00 0.00 37.35 3.95
315 316 3.243401 GGTTTTCAAGTGAATGCCGTTCT 60.243 43.478 0.00 0.00 37.72 3.01
316 317 4.359706 GTTTTCAAGTGAATGCCGTTCTT 58.640 39.130 0.00 0.00 37.72 2.52
317 318 3.624326 TTCAAGTGAATGCCGTTCTTG 57.376 42.857 0.00 0.00 37.72 3.02
318 319 2.571212 TCAAGTGAATGCCGTTCTTGT 58.429 42.857 0.00 0.00 37.72 3.16
319 320 2.290367 TCAAGTGAATGCCGTTCTTGTG 59.710 45.455 0.00 0.00 37.72 3.33
320 321 1.238439 AGTGAATGCCGTTCTTGTGG 58.762 50.000 0.00 0.00 37.72 4.17
321 322 1.202758 AGTGAATGCCGTTCTTGTGGA 60.203 47.619 0.00 0.00 37.72 4.02
322 323 1.069227 GTGAATGCCGTTCTTGTGGAC 60.069 52.381 0.00 0.00 37.72 4.02
323 324 1.234821 GAATGCCGTTCTTGTGGACA 58.765 50.000 0.00 0.00 33.89 4.02
324 325 0.951558 AATGCCGTTCTTGTGGACAC 59.048 50.000 0.00 0.00 0.00 3.67
325 326 0.889186 ATGCCGTTCTTGTGGACACC 60.889 55.000 0.00 0.00 0.00 4.16
326 327 1.227853 GCCGTTCTTGTGGACACCT 60.228 57.895 0.00 0.00 0.00 4.00
327 328 1.228657 GCCGTTCTTGTGGACACCTC 61.229 60.000 0.00 0.00 0.00 3.85
328 329 0.393077 CCGTTCTTGTGGACACCTCT 59.607 55.000 0.00 0.00 0.00 3.69
329 330 1.605712 CCGTTCTTGTGGACACCTCTC 60.606 57.143 0.00 0.00 0.00 3.20
330 331 1.784525 GTTCTTGTGGACACCTCTCG 58.215 55.000 0.00 0.00 0.00 4.04
331 332 1.340248 GTTCTTGTGGACACCTCTCGA 59.660 52.381 0.00 0.00 0.00 4.04
332 333 0.959553 TCTTGTGGACACCTCTCGAC 59.040 55.000 0.00 0.00 0.00 4.20
333 334 0.038159 CTTGTGGACACCTCTCGACC 60.038 60.000 0.00 0.00 0.00 4.79
334 335 1.469335 TTGTGGACACCTCTCGACCC 61.469 60.000 0.00 0.00 0.00 4.46
335 336 1.906824 GTGGACACCTCTCGACCCA 60.907 63.158 0.00 0.00 0.00 4.51
336 337 1.078528 TGGACACCTCTCGACCCAT 59.921 57.895 0.00 0.00 0.00 4.00
337 338 0.333652 TGGACACCTCTCGACCCATA 59.666 55.000 0.00 0.00 0.00 2.74
338 339 1.272816 TGGACACCTCTCGACCCATAA 60.273 52.381 0.00 0.00 0.00 1.90
339 340 1.829222 GGACACCTCTCGACCCATAAA 59.171 52.381 0.00 0.00 0.00 1.40
340 341 2.418334 GGACACCTCTCGACCCATAAAC 60.418 54.545 0.00 0.00 0.00 2.01
341 342 1.553704 ACACCTCTCGACCCATAAACC 59.446 52.381 0.00 0.00 0.00 3.27
342 343 0.822164 ACCTCTCGACCCATAAACCG 59.178 55.000 0.00 0.00 0.00 4.44
343 344 0.104304 CCTCTCGACCCATAAACCGG 59.896 60.000 0.00 0.00 0.00 5.28
349 350 4.805768 CCCATAAACCGGGCCGCA 62.806 66.667 23.20 5.21 36.72 5.69
350 351 2.518349 CCATAAACCGGGCCGCAT 60.518 61.111 23.20 7.95 0.00 4.73
351 352 1.228003 CCATAAACCGGGCCGCATA 60.228 57.895 23.20 13.13 0.00 3.14
352 353 0.608035 CCATAAACCGGGCCGCATAT 60.608 55.000 23.20 14.89 0.00 1.78
353 354 0.521291 CATAAACCGGGCCGCATATG 59.479 55.000 23.20 21.89 0.00 1.78
354 355 1.241315 ATAAACCGGGCCGCATATGC 61.241 55.000 23.20 18.08 37.78 3.14
371 372 2.815308 CCGAGCGGGCTGAGTATT 59.185 61.111 0.00 0.00 0.00 1.89
372 373 1.144057 CCGAGCGGGCTGAGTATTT 59.856 57.895 0.00 0.00 0.00 1.40
373 374 0.876342 CCGAGCGGGCTGAGTATTTC 60.876 60.000 0.00 0.00 0.00 2.17
374 375 0.876342 CGAGCGGGCTGAGTATTTCC 60.876 60.000 0.00 0.00 0.00 3.13
375 376 0.533085 GAGCGGGCTGAGTATTTCCC 60.533 60.000 0.00 0.00 35.42 3.97
378 379 3.080647 GGGCTGAGTATTTCCCGTG 57.919 57.895 0.00 0.00 0.00 4.94
379 380 1.095807 GGGCTGAGTATTTCCCGTGC 61.096 60.000 0.00 0.00 0.00 5.34
380 381 0.107654 GGCTGAGTATTTCCCGTGCT 60.108 55.000 0.00 0.00 0.00 4.40
381 382 1.679032 GGCTGAGTATTTCCCGTGCTT 60.679 52.381 0.00 0.00 0.00 3.91
382 383 2.084546 GCTGAGTATTTCCCGTGCTTT 58.915 47.619 0.00 0.00 0.00 3.51
383 384 2.488153 GCTGAGTATTTCCCGTGCTTTT 59.512 45.455 0.00 0.00 0.00 2.27
384 385 3.426292 GCTGAGTATTTCCCGTGCTTTTC 60.426 47.826 0.00 0.00 0.00 2.29
385 386 3.078837 TGAGTATTTCCCGTGCTTTTCC 58.921 45.455 0.00 0.00 0.00 3.13
386 387 2.422479 GAGTATTTCCCGTGCTTTTCCC 59.578 50.000 0.00 0.00 0.00 3.97
387 388 2.164338 GTATTTCCCGTGCTTTTCCCA 58.836 47.619 0.00 0.00 0.00 4.37
388 389 0.966179 ATTTCCCGTGCTTTTCCCAC 59.034 50.000 0.00 0.00 0.00 4.61
389 390 1.110518 TTTCCCGTGCTTTTCCCACC 61.111 55.000 0.00 0.00 0.00 4.61
390 391 2.987355 TTCCCGTGCTTTTCCCACCC 62.987 60.000 0.00 0.00 0.00 4.61
391 392 2.203422 CCGTGCTTTTCCCACCCA 60.203 61.111 0.00 0.00 0.00 4.51
392 393 2.561037 CCGTGCTTTTCCCACCCAC 61.561 63.158 0.00 0.00 0.00 4.61
393 394 2.903547 CGTGCTTTTCCCACCCACG 61.904 63.158 0.00 0.00 42.36 4.94
394 395 1.826487 GTGCTTTTCCCACCCACGT 60.826 57.895 0.00 0.00 0.00 4.49
395 396 1.527380 TGCTTTTCCCACCCACGTC 60.527 57.895 0.00 0.00 0.00 4.34
396 397 2.265904 GCTTTTCCCACCCACGTCC 61.266 63.158 0.00 0.00 0.00 4.79
397 398 1.149627 CTTTTCCCACCCACGTCCA 59.850 57.895 0.00 0.00 0.00 4.02
398 399 0.251165 CTTTTCCCACCCACGTCCAT 60.251 55.000 0.00 0.00 0.00 3.41
399 400 0.186386 TTTTCCCACCCACGTCCATT 59.814 50.000 0.00 0.00 0.00 3.16
400 401 0.186386 TTTCCCACCCACGTCCATTT 59.814 50.000 0.00 0.00 0.00 2.32
401 402 0.538516 TTCCCACCCACGTCCATTTG 60.539 55.000 0.00 0.00 0.00 2.32
402 403 1.228429 CCCACCCACGTCCATTTGT 60.228 57.895 0.00 0.00 0.00 2.83
403 404 1.241315 CCCACCCACGTCCATTTGTC 61.241 60.000 0.00 0.00 0.00 3.18
404 405 1.573829 CCACCCACGTCCATTTGTCG 61.574 60.000 0.00 0.00 0.00 4.35
405 406 0.882927 CACCCACGTCCATTTGTCGT 60.883 55.000 0.00 0.00 38.34 4.34
406 407 0.601841 ACCCACGTCCATTTGTCGTC 60.602 55.000 0.00 0.00 35.62 4.20
407 408 0.320421 CCCACGTCCATTTGTCGTCT 60.320 55.000 0.00 0.00 35.62 4.18
408 409 1.068474 CCACGTCCATTTGTCGTCTC 58.932 55.000 0.00 0.00 35.62 3.36
409 410 1.336887 CCACGTCCATTTGTCGTCTCT 60.337 52.381 0.00 0.00 35.62 3.10
410 411 1.721389 CACGTCCATTTGTCGTCTCTG 59.279 52.381 0.00 0.00 35.62 3.35
411 412 1.611977 ACGTCCATTTGTCGTCTCTGA 59.388 47.619 0.00 0.00 32.26 3.27
412 413 2.254459 CGTCCATTTGTCGTCTCTGAG 58.746 52.381 0.00 0.00 0.00 3.35
413 414 1.996191 GTCCATTTGTCGTCTCTGAGC 59.004 52.381 0.00 0.00 0.00 4.26
414 415 0.994995 CCATTTGTCGTCTCTGAGCG 59.005 55.000 12.99 12.99 0.00 5.03
415 416 0.368227 CATTTGTCGTCTCTGAGCGC 59.632 55.000 0.00 0.00 0.00 5.92
416 417 0.038251 ATTTGTCGTCTCTGAGCGCA 60.038 50.000 11.47 12.44 0.00 6.09
417 418 0.038251 TTTGTCGTCTCTGAGCGCAT 60.038 50.000 11.47 0.00 0.00 4.73
418 419 0.456824 TTGTCGTCTCTGAGCGCATC 60.457 55.000 11.47 4.91 0.00 3.91
419 420 1.587613 GTCGTCTCTGAGCGCATCC 60.588 63.158 11.47 0.00 0.00 3.51
420 421 2.653448 CGTCTCTGAGCGCATCCG 60.653 66.667 11.47 0.81 37.57 4.18
421 422 2.801421 GTCTCTGAGCGCATCCGA 59.199 61.111 11.47 5.53 36.29 4.55
422 423 1.299014 GTCTCTGAGCGCATCCGAG 60.299 63.158 11.47 14.86 39.83 4.63
423 424 1.452108 TCTCTGAGCGCATCCGAGA 60.452 57.895 19.27 19.27 43.58 4.04
424 425 1.299014 CTCTGAGCGCATCCGAGAC 60.299 63.158 11.47 0.00 40.67 3.36
425 426 2.279120 CTGAGCGCATCCGAGACC 60.279 66.667 11.47 0.00 36.29 3.85
426 427 3.068064 TGAGCGCATCCGAGACCA 61.068 61.111 11.47 0.00 36.29 4.02
427 428 2.279120 GAGCGCATCCGAGACCAG 60.279 66.667 11.47 0.00 36.29 4.00
428 429 4.521062 AGCGCATCCGAGACCAGC 62.521 66.667 11.47 0.00 36.29 4.85
429 430 4.819761 GCGCATCCGAGACCAGCA 62.820 66.667 0.30 0.00 36.29 4.41
430 431 2.107750 CGCATCCGAGACCAGCAT 59.892 61.111 0.00 0.00 36.29 3.79
431 432 2.242572 CGCATCCGAGACCAGCATG 61.243 63.158 0.00 0.00 36.29 4.06
450 451 3.641437 TGGTTTGCTTGATTCTTTCCG 57.359 42.857 0.00 0.00 0.00 4.30
451 452 2.295909 TGGTTTGCTTGATTCTTTCCGG 59.704 45.455 0.00 0.00 0.00 5.14
452 453 2.296190 GGTTTGCTTGATTCTTTCCGGT 59.704 45.455 0.00 0.00 0.00 5.28
453 454 3.504520 GGTTTGCTTGATTCTTTCCGGTA 59.495 43.478 0.00 0.00 0.00 4.02
454 455 4.157840 GGTTTGCTTGATTCTTTCCGGTAT 59.842 41.667 0.00 0.00 0.00 2.73
455 456 5.336451 GGTTTGCTTGATTCTTTCCGGTATT 60.336 40.000 0.00 0.00 0.00 1.89
456 457 5.560966 TTGCTTGATTCTTTCCGGTATTC 57.439 39.130 0.00 0.00 0.00 1.75
457 458 3.621268 TGCTTGATTCTTTCCGGTATTCG 59.379 43.478 0.00 0.00 38.88 3.34
468 469 2.111041 CGGTATTCGGTCGACCTTAC 57.889 55.000 30.92 25.41 34.75 2.34
469 470 1.401552 CGGTATTCGGTCGACCTTACA 59.598 52.381 30.92 13.06 34.75 2.41
470 471 2.159393 CGGTATTCGGTCGACCTTACAA 60.159 50.000 30.92 18.10 34.75 2.41
471 472 3.442100 GGTATTCGGTCGACCTTACAAG 58.558 50.000 30.92 15.20 0.00 3.16
510 511 3.068165 GGTTGTAAAAGCTTTCAGCCAGT 59.932 43.478 21.51 5.88 43.77 4.00
538 559 2.846193 CTCTAGAGCTCTACGCCTCTT 58.154 52.381 19.72 0.00 40.39 2.85
548 569 3.806380 TCTACGCCTCTTACCAGTCTAG 58.194 50.000 0.00 0.00 0.00 2.43
570 606 6.808321 AGTACTGGTGTGGTATCATTGTAT 57.192 37.500 0.00 0.00 0.00 2.29
586 622 3.799432 TGTATCTCTCCCTCCTAGAGC 57.201 52.381 0.00 0.00 40.30 4.09
587 623 3.056832 TGTATCTCTCCCTCCTAGAGCA 58.943 50.000 0.00 0.00 40.30 4.26
601 637 2.282391 AGCACGCTTTGGGCATCA 60.282 55.556 0.00 0.00 41.91 3.07
634 670 1.446445 CGGCATTTGTGGCATGTGG 60.446 57.895 0.00 0.00 0.00 4.17
647 683 1.066002 GCATGTGGATGCGTTGCTTAT 59.934 47.619 0.00 0.00 45.50 1.73
648 684 2.480073 GCATGTGGATGCGTTGCTTATT 60.480 45.455 0.00 0.00 45.50 1.40
650 686 4.530388 CATGTGGATGCGTTGCTTATTAG 58.470 43.478 0.00 0.00 0.00 1.73
661 697 1.818221 GCTTATTAGCACGGCGACCG 61.818 60.000 16.62 15.25 46.95 4.79
695 731 6.918892 GCAAGGGGCGAATTTTTATTTATT 57.081 33.333 0.00 0.00 0.00 1.40
696 732 7.315247 GCAAGGGGCGAATTTTTATTTATTT 57.685 32.000 0.00 0.00 0.00 1.40
697 733 8.426881 GCAAGGGGCGAATTTTTATTTATTTA 57.573 30.769 0.00 0.00 0.00 1.40
736 772 1.864082 CAAAATTTTGCCGGCGACTTT 59.136 42.857 23.90 18.48 0.00 2.66
737 773 1.496934 AAATTTTGCCGGCGACTTTG 58.503 45.000 23.90 0.00 0.00 2.77
750 789 3.718097 CTTTGCCGTGGCGCGTAA 61.718 61.111 20.01 11.20 45.51 3.18
751 790 3.243274 CTTTGCCGTGGCGCGTAAA 62.243 57.895 20.01 17.48 45.51 2.01
756 795 2.104253 CCGTGGCGCGTAAAGGATT 61.104 57.895 20.01 0.00 39.32 3.01
757 796 1.347221 CGTGGCGCGTAAAGGATTC 59.653 57.895 13.13 0.00 35.54 2.52
764 805 3.161306 GCGCGTAAAGGATTCAAAGTTC 58.839 45.455 8.43 0.00 0.00 3.01
776 817 7.041721 AGGATTCAAAGTTCCAAACTCAAAAC 58.958 34.615 0.00 0.00 41.91 2.43
778 819 5.079689 TCAAAGTTCCAAACTCAAAACCC 57.920 39.130 0.00 0.00 41.91 4.11
792 833 3.659089 AACCCCCGACGAATCTGCG 62.659 63.158 0.00 0.00 37.29 5.18
798 839 2.279469 CGACGAATCTGCGGAGAAC 58.721 57.895 11.77 7.56 35.12 3.01
799 840 1.140407 CGACGAATCTGCGGAGAACC 61.140 60.000 11.77 4.76 35.12 3.62
800 841 0.806492 GACGAATCTGCGGAGAACCC 60.806 60.000 11.77 2.09 35.12 4.11
802 843 1.084370 CGAATCTGCGGAGAACCCAC 61.084 60.000 11.77 0.22 34.14 4.61
803 844 0.250513 GAATCTGCGGAGAACCCACT 59.749 55.000 11.77 0.00 34.14 4.00
861 910 1.745489 GGCCACGAGACCACCAATC 60.745 63.158 0.00 0.00 0.00 2.67
957 1006 2.283532 ACTCTGCTCGCCACTCCT 60.284 61.111 0.00 0.00 0.00 3.69
960 1009 2.183811 CTGCTCGCCACTCCTCTG 59.816 66.667 0.00 0.00 0.00 3.35
962 1011 4.828925 GCTCGCCACTCCTCTGCC 62.829 72.222 0.00 0.00 0.00 4.85
971 1020 2.203832 TCCTCTGCCCTGCTCACA 60.204 61.111 0.00 0.00 0.00 3.58
975 1024 2.433838 CTGCCCTGCTCACACTCG 60.434 66.667 0.00 0.00 0.00 4.18
976 1025 3.947132 CTGCCCTGCTCACACTCGG 62.947 68.421 0.00 0.00 0.00 4.63
978 1027 2.262915 CCCTGCTCACACTCGGTC 59.737 66.667 0.00 0.00 0.00 4.79
979 1028 2.279069 CCCTGCTCACACTCGGTCT 61.279 63.158 0.00 0.00 0.00 3.85
980 1029 1.214062 CCTGCTCACACTCGGTCTC 59.786 63.158 0.00 0.00 0.00 3.36
981 1030 1.527433 CCTGCTCACACTCGGTCTCA 61.527 60.000 0.00 0.00 0.00 3.27
982 1031 0.387878 CTGCTCACACTCGGTCTCAC 60.388 60.000 0.00 0.00 0.00 3.51
985 1034 0.387878 CTCACACTCGGTCTCACTGC 60.388 60.000 0.00 0.00 0.00 4.40
986 1035 1.106944 TCACACTCGGTCTCACTGCA 61.107 55.000 0.00 0.00 0.00 4.41
987 1036 0.665670 CACACTCGGTCTCACTGCAG 60.666 60.000 13.48 13.48 0.00 4.41
988 1037 1.735920 CACTCGGTCTCACTGCAGC 60.736 63.158 15.27 0.00 0.00 5.25
989 1038 2.505777 CTCGGTCTCACTGCAGCG 60.506 66.667 15.27 3.95 34.83 5.18
1005 1057 2.437180 CGGAGCTGAGCAATGGCA 60.437 61.111 7.39 0.00 44.61 4.92
1117 1181 1.278127 ACCCCAACATCAACTACTCCG 59.722 52.381 0.00 0.00 0.00 4.63
1171 1235 2.945668 GACCTCATCTGTATGCCCAAAC 59.054 50.000 0.00 0.00 32.76 2.93
1185 1249 2.115427 CCCAAACAAAAACCCTCACCT 58.885 47.619 0.00 0.00 0.00 4.00
1186 1250 2.102420 CCCAAACAAAAACCCTCACCTC 59.898 50.000 0.00 0.00 0.00 3.85
1187 1251 2.223711 CCAAACAAAAACCCTCACCTCG 60.224 50.000 0.00 0.00 0.00 4.63
1188 1252 2.685897 CAAACAAAAACCCTCACCTCGA 59.314 45.455 0.00 0.00 0.00 4.04
1220 1291 3.615811 ACCTCTGCCTCCCCTCCA 61.616 66.667 0.00 0.00 0.00 3.86
1249 1332 2.292016 CAGCTCCACCAGATCTACTACG 59.708 54.545 0.00 0.00 0.00 3.51
1259 1356 1.453762 ATCTACTACGTCCCTGCCGC 61.454 60.000 0.00 0.00 0.00 6.53
1260 1357 3.135056 CTACTACGTCCCTGCCGCC 62.135 68.421 0.00 0.00 0.00 6.13
1261 1358 3.650298 TACTACGTCCCTGCCGCCT 62.650 63.158 0.00 0.00 0.00 5.52
1262 1359 4.208686 CTACGTCCCTGCCGCCTC 62.209 72.222 0.00 0.00 0.00 4.70
1361 1463 0.953471 TACGACAACTGCACCATGGC 60.953 55.000 13.04 0.00 0.00 4.40
1483 1585 3.642778 AAGGTCGCCATCACCGTCG 62.643 63.158 0.00 0.00 39.13 5.12
1510 1612 0.598680 CATCTTCGATCTCGGCCCAC 60.599 60.000 0.00 0.00 40.29 4.61
1633 1753 1.684983 CTGCCATCATTGCCCTTTAGG 59.315 52.381 0.00 0.00 39.47 2.69
1636 1756 2.310538 CCATCATTGCCCTTTAGGTCC 58.689 52.381 0.00 0.00 38.26 4.46
1637 1757 2.091665 CCATCATTGCCCTTTAGGTCCT 60.092 50.000 0.00 0.00 38.26 3.85
1638 1758 3.138283 CCATCATTGCCCTTTAGGTCCTA 59.862 47.826 0.00 0.00 38.26 2.94
1639 1759 4.386312 CCATCATTGCCCTTTAGGTCCTAA 60.386 45.833 7.29 7.29 38.26 2.69
1668 1788 0.462581 TCATCTGCAGCGATTGACCC 60.463 55.000 9.47 0.00 0.00 4.46
1736 1860 6.989169 AGCTAGCTTTCCTGATGTAATGTAAG 59.011 38.462 12.68 0.00 0.00 2.34
1738 1862 5.500234 AGCTTTCCTGATGTAATGTAAGCA 58.500 37.500 0.00 0.00 39.24 3.91
1740 1864 5.727791 GCTTTCCTGATGTAATGTAAGCACG 60.728 44.000 0.00 0.00 37.34 5.34
1746 1870 3.033368 TGTAATGTAAGCACGTCTGCA 57.967 42.857 0.52 0.00 46.97 4.41
1747 1871 3.595173 TGTAATGTAAGCACGTCTGCAT 58.405 40.909 0.52 0.00 46.97 3.96
1748 1872 3.616821 TGTAATGTAAGCACGTCTGCATC 59.383 43.478 0.52 0.00 46.97 3.91
1749 1873 1.280982 ATGTAAGCACGTCTGCATCG 58.719 50.000 9.35 9.35 46.97 3.84
1750 1874 0.038618 TGTAAGCACGTCTGCATCGT 60.039 50.000 10.52 10.52 46.97 3.73
1751 1875 0.640768 GTAAGCACGTCTGCATCGTC 59.359 55.000 12.86 9.01 46.97 4.20
1752 1876 0.796870 TAAGCACGTCTGCATCGTCG 60.797 55.000 12.86 10.28 46.97 5.12
1816 1940 7.351223 GCTAGTTGCAATTCATCAAGATAGAC 58.649 38.462 0.59 0.00 42.31 2.59
1968 2108 4.184629 CACCACTTCACTTACTGCTATCC 58.815 47.826 0.00 0.00 0.00 2.59
2015 2156 0.770499 TCTGAACCATGTGGCTTGGA 59.230 50.000 7.86 0.00 39.32 3.53
2091 2232 2.202272 GCGCTACTTCGACGACGT 60.202 61.111 11.93 11.93 40.69 4.34
2171 2312 2.093106 TCTGAAAGAGTAGCTCGGGTC 58.907 52.381 0.00 0.00 38.67 4.46
2198 2339 7.722949 ACAATGTGGGATTTCATAATCTGTT 57.277 32.000 0.00 0.00 40.07 3.16
2204 2345 9.519191 TGTGGGATTTCATAATCTGTTATATGG 57.481 33.333 0.00 0.00 40.07 2.74
2205 2346 9.520515 GTGGGATTTCATAATCTGTTATATGGT 57.479 33.333 0.00 0.00 40.07 3.55
2206 2347 9.739276 TGGGATTTCATAATCTGTTATATGGTC 57.261 33.333 0.00 0.00 40.07 4.02
2207 2348 9.965902 GGGATTTCATAATCTGTTATATGGTCT 57.034 33.333 0.00 0.00 40.07 3.85
2218 2359 6.978659 TCTGTTATATGGTCTTAGTTGCTTCG 59.021 38.462 0.00 0.00 0.00 3.79
2219 2360 6.869695 TGTTATATGGTCTTAGTTGCTTCGA 58.130 36.000 0.00 0.00 0.00 3.71
2229 2370 3.194005 AGTTGCTTCGACAGAGGAAAA 57.806 42.857 0.00 0.00 0.00 2.29
2230 2371 3.134458 AGTTGCTTCGACAGAGGAAAAG 58.866 45.455 0.00 0.00 0.00 2.27
2291 2432 3.568007 AGATTGCTCCGAGCTAGAAGTAG 59.432 47.826 20.87 0.00 42.97 2.57
2350 2491 2.679199 GCTAGAAGTAGCGGCCAAC 58.321 57.895 2.24 0.00 42.41 3.77
2407 2548 1.599797 GTTGTCACAACCCTCCCCG 60.600 63.158 9.76 0.00 0.00 5.73
2440 2581 1.893808 CAAGCACCGGTCAAGCACT 60.894 57.895 16.80 1.69 0.00 4.40
2452 2593 2.677836 GTCAAGCACTTTCTCACACACA 59.322 45.455 0.00 0.00 0.00 3.72
2474 2615 2.163412 GCAGATAGACTATCCTCCTGCG 59.837 54.545 17.23 1.57 35.16 5.18
2484 2625 2.577606 TCCTCCTGCGGATTTTCAAA 57.422 45.000 0.00 0.00 0.00 2.69
2486 2627 2.162681 CCTCCTGCGGATTTTCAAACT 58.837 47.619 0.00 0.00 0.00 2.66
2489 2630 1.202348 CCTGCGGATTTTCAAACTCCC 59.798 52.381 1.03 0.00 0.00 4.30
2537 2680 8.689251 ACACGATATCAATAATCTATGTTCGG 57.311 34.615 3.12 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.464157 AGCAACTAGAGCCAAGTGTC 57.536 50.000 0.00 0.00 0.00 3.67
1 2 2.938956 AAGCAACTAGAGCCAAGTGT 57.061 45.000 0.00 0.00 0.00 3.55
2 3 2.485814 GGAAAGCAACTAGAGCCAAGTG 59.514 50.000 0.00 0.00 0.00 3.16
3 4 2.784347 GGAAAGCAACTAGAGCCAAGT 58.216 47.619 0.00 0.00 0.00 3.16
4 5 1.734465 CGGAAAGCAACTAGAGCCAAG 59.266 52.381 0.00 0.00 0.00 3.61
5 6 1.610624 CCGGAAAGCAACTAGAGCCAA 60.611 52.381 0.00 0.00 0.00 4.52
6 7 0.036388 CCGGAAAGCAACTAGAGCCA 60.036 55.000 0.00 0.00 0.00 4.75
7 8 0.036294 ACCGGAAAGCAACTAGAGCC 60.036 55.000 9.46 0.00 0.00 4.70
8 9 1.464997 CAACCGGAAAGCAACTAGAGC 59.535 52.381 9.46 0.00 0.00 4.09
9 10 2.076863 CCAACCGGAAAGCAACTAGAG 58.923 52.381 9.46 0.00 0.00 2.43
10 11 1.418637 ACCAACCGGAAAGCAACTAGA 59.581 47.619 9.46 0.00 35.59 2.43
11 12 1.892209 ACCAACCGGAAAGCAACTAG 58.108 50.000 9.46 0.00 35.59 2.57
12 13 1.950909 CAACCAACCGGAAAGCAACTA 59.049 47.619 9.46 0.00 35.59 2.24
13 14 0.744281 CAACCAACCGGAAAGCAACT 59.256 50.000 9.46 0.00 35.59 3.16
14 15 0.741915 TCAACCAACCGGAAAGCAAC 59.258 50.000 9.46 0.00 35.59 4.17
15 16 1.028905 CTCAACCAACCGGAAAGCAA 58.971 50.000 9.46 0.00 35.59 3.91
16 17 1.452145 GCTCAACCAACCGGAAAGCA 61.452 55.000 9.46 0.00 35.82 3.91
17 18 1.172812 AGCTCAACCAACCGGAAAGC 61.173 55.000 9.46 5.90 35.92 3.51
18 19 1.318576 AAGCTCAACCAACCGGAAAG 58.681 50.000 9.46 0.00 35.59 2.62
19 20 1.679153 GAAAGCTCAACCAACCGGAAA 59.321 47.619 9.46 0.00 35.59 3.13
20 21 1.314730 GAAAGCTCAACCAACCGGAA 58.685 50.000 9.46 0.00 35.59 4.30
21 22 0.181587 TGAAAGCTCAACCAACCGGA 59.818 50.000 9.46 0.00 35.59 5.14
22 23 1.200020 GATGAAAGCTCAACCAACCGG 59.800 52.381 0.00 0.00 34.49 5.28
23 24 1.200020 GGATGAAAGCTCAACCAACCG 59.800 52.381 0.00 0.00 42.66 4.44
24 25 2.229784 CAGGATGAAAGCTCAACCAACC 59.770 50.000 5.26 1.63 44.94 3.77
25 26 2.352127 GCAGGATGAAAGCTCAACCAAC 60.352 50.000 5.26 0.00 44.94 3.77
26 27 1.888512 GCAGGATGAAAGCTCAACCAA 59.111 47.619 5.26 0.00 44.94 3.67
27 28 1.538047 GCAGGATGAAAGCTCAACCA 58.462 50.000 5.26 0.00 44.94 3.67
28 29 0.813821 GGCAGGATGAAAGCTCAACC 59.186 55.000 0.00 0.00 43.29 3.77
29 30 1.831580 AGGCAGGATGAAAGCTCAAC 58.168 50.000 0.00 0.00 39.69 3.18
30 31 2.165167 CAAGGCAGGATGAAAGCTCAA 58.835 47.619 0.00 0.00 39.69 3.02
31 32 1.074405 ACAAGGCAGGATGAAAGCTCA 59.926 47.619 0.00 0.00 39.69 4.26
32 33 1.831580 ACAAGGCAGGATGAAAGCTC 58.168 50.000 0.00 0.00 39.69 4.09
33 34 2.040278 TGTACAAGGCAGGATGAAAGCT 59.960 45.455 0.00 0.00 39.69 3.74
34 35 2.162408 GTGTACAAGGCAGGATGAAAGC 59.838 50.000 0.00 0.00 39.69 3.51
35 36 2.749621 GGTGTACAAGGCAGGATGAAAG 59.250 50.000 0.00 0.00 39.69 2.62
36 37 2.107378 TGGTGTACAAGGCAGGATGAAA 59.893 45.455 0.00 0.00 39.69 2.69
37 38 1.702401 TGGTGTACAAGGCAGGATGAA 59.298 47.619 0.00 0.00 39.69 2.57
38 39 1.357137 TGGTGTACAAGGCAGGATGA 58.643 50.000 0.00 0.00 39.69 2.92
39 40 2.424601 CAATGGTGTACAAGGCAGGATG 59.575 50.000 0.00 0.00 40.87 3.51
40 41 2.726821 CAATGGTGTACAAGGCAGGAT 58.273 47.619 0.00 0.00 0.00 3.24
41 42 1.886222 GCAATGGTGTACAAGGCAGGA 60.886 52.381 0.00 0.00 33.79 3.86
42 43 0.527565 GCAATGGTGTACAAGGCAGG 59.472 55.000 0.00 0.00 33.79 4.85
43 44 1.470098 GAGCAATGGTGTACAAGGCAG 59.530 52.381 0.00 0.00 35.41 4.85
44 45 1.533625 GAGCAATGGTGTACAAGGCA 58.466 50.000 0.00 0.00 35.41 4.75
45 46 0.811281 GGAGCAATGGTGTACAAGGC 59.189 55.000 0.00 0.00 33.78 4.35
46 47 2.198827 TGGAGCAATGGTGTACAAGG 57.801 50.000 0.00 0.00 0.00 3.61
47 48 2.489329 CCTTGGAGCAATGGTGTACAAG 59.511 50.000 0.00 11.61 34.49 3.16
48 49 2.513753 CCTTGGAGCAATGGTGTACAA 58.486 47.619 0.00 0.00 0.00 2.41
49 50 1.886222 GCCTTGGAGCAATGGTGTACA 60.886 52.381 0.00 0.00 0.00 2.90
50 51 0.811281 GCCTTGGAGCAATGGTGTAC 59.189 55.000 0.00 0.00 0.00 2.90
51 52 0.323360 GGCCTTGGAGCAATGGTGTA 60.323 55.000 0.00 0.00 0.00 2.90
52 53 1.607467 GGCCTTGGAGCAATGGTGT 60.607 57.895 0.00 0.00 0.00 4.16
53 54 1.304713 AGGCCTTGGAGCAATGGTG 60.305 57.895 0.00 0.00 0.00 4.17
54 55 1.000396 GAGGCCTTGGAGCAATGGT 60.000 57.895 6.77 0.00 0.00 3.55
55 56 2.117156 CGAGGCCTTGGAGCAATGG 61.117 63.158 12.81 0.00 0.00 3.16
56 57 1.377725 ACGAGGCCTTGGAGCAATG 60.378 57.895 24.40 0.69 0.00 2.82
57 58 1.377725 CACGAGGCCTTGGAGCAAT 60.378 57.895 24.40 0.00 0.00 3.56
58 59 2.032528 CACGAGGCCTTGGAGCAA 59.967 61.111 24.40 0.00 0.00 3.91
59 60 2.818169 AACACGAGGCCTTGGAGCA 61.818 57.895 24.40 0.00 0.00 4.26
60 61 2.032681 AACACGAGGCCTTGGAGC 59.967 61.111 24.40 1.12 0.00 4.70
61 62 0.951040 GACAACACGAGGCCTTGGAG 60.951 60.000 24.40 17.65 0.00 3.86
62 63 1.070786 GACAACACGAGGCCTTGGA 59.929 57.895 24.40 0.00 0.00 3.53
63 64 2.317609 CGACAACACGAGGCCTTGG 61.318 63.158 24.40 14.90 35.09 3.61
64 65 2.317609 CCGACAACACGAGGCCTTG 61.318 63.158 19.26 19.26 35.09 3.61
65 66 2.030562 CCGACAACACGAGGCCTT 59.969 61.111 6.77 0.00 35.09 4.35
66 67 3.231736 ACCGACAACACGAGGCCT 61.232 61.111 3.86 3.86 35.09 5.19
67 68 3.041940 CACCGACAACACGAGGCC 61.042 66.667 0.00 0.00 35.09 5.19
68 69 3.712881 GCACCGACAACACGAGGC 61.713 66.667 0.00 0.00 35.09 4.70
69 70 2.022129 GAGCACCGACAACACGAGG 61.022 63.158 0.00 0.00 35.09 4.63
70 71 0.874175 TTGAGCACCGACAACACGAG 60.874 55.000 0.00 0.00 35.09 4.18
71 72 0.874175 CTTGAGCACCGACAACACGA 60.874 55.000 0.00 0.00 35.09 4.35
72 73 1.564622 CTTGAGCACCGACAACACG 59.435 57.895 0.00 0.00 0.00 4.49
73 74 1.160329 AGCTTGAGCACCGACAACAC 61.160 55.000 5.70 0.00 45.16 3.32
74 75 0.880278 GAGCTTGAGCACCGACAACA 60.880 55.000 5.70 0.00 45.16 3.33
75 76 1.569479 GGAGCTTGAGCACCGACAAC 61.569 60.000 5.70 0.00 41.64 3.32
76 77 1.301716 GGAGCTTGAGCACCGACAA 60.302 57.895 5.70 0.00 41.64 3.18
77 78 2.343758 GGAGCTTGAGCACCGACA 59.656 61.111 5.70 0.00 41.64 4.35
82 83 0.957888 GAAGGGTGGAGCTTGAGCAC 60.958 60.000 5.70 0.00 45.16 4.40
83 84 1.376466 GAAGGGTGGAGCTTGAGCA 59.624 57.895 5.70 0.00 45.16 4.26
84 85 1.377856 GGAAGGGTGGAGCTTGAGC 60.378 63.158 0.00 0.00 42.49 4.26
85 86 1.078848 CGGAAGGGTGGAGCTTGAG 60.079 63.158 0.00 0.00 0.00 3.02
86 87 3.068881 CGGAAGGGTGGAGCTTGA 58.931 61.111 0.00 0.00 0.00 3.02
98 99 0.684153 ATGGGGCAAATGACCGGAAG 60.684 55.000 9.46 0.00 47.00 3.46
99 100 0.682855 GATGGGGCAAATGACCGGAA 60.683 55.000 9.46 0.00 47.00 4.30
100 101 1.077068 GATGGGGCAAATGACCGGA 60.077 57.895 9.46 0.00 47.00 5.14
101 102 2.480610 CGATGGGGCAAATGACCGG 61.481 63.158 0.00 0.00 47.00 5.28
102 103 3.110139 CGATGGGGCAAATGACCG 58.890 61.111 0.00 0.00 47.00 4.79
103 104 2.051518 TGCGATGGGGCAAATGACC 61.052 57.895 0.00 0.00 44.61 4.02
104 105 3.602103 TGCGATGGGGCAAATGAC 58.398 55.556 0.00 0.00 40.59 3.06
110 111 0.246086 GTTTGATTTGCGATGGGGCA 59.754 50.000 0.00 0.00 42.12 5.36
111 112 0.246086 TGTTTGATTTGCGATGGGGC 59.754 50.000 0.00 0.00 0.00 5.80
112 113 2.094078 ACATGTTTGATTTGCGATGGGG 60.094 45.455 0.00 0.00 0.00 4.96
113 114 3.235157 ACATGTTTGATTTGCGATGGG 57.765 42.857 0.00 0.00 0.00 4.00
114 115 5.375717 CAAAACATGTTTGATTTGCGATGG 58.624 37.500 23.93 0.00 38.33 3.51
120 121 7.216693 GTGTCTTTGCAAAACATGTTTGATTTG 59.783 33.333 23.93 18.27 44.21 2.32
121 122 7.094890 TGTGTCTTTGCAAAACATGTTTGATTT 60.095 29.630 23.93 6.00 32.36 2.17
122 123 6.370994 TGTGTCTTTGCAAAACATGTTTGATT 59.629 30.769 23.93 6.38 32.36 2.57
123 124 5.873712 TGTGTCTTTGCAAAACATGTTTGAT 59.126 32.000 23.93 7.14 32.36 2.57
124 125 5.119898 GTGTGTCTTTGCAAAACATGTTTGA 59.880 36.000 23.93 12.82 32.36 2.69
125 126 5.315195 GTGTGTCTTTGCAAAACATGTTTG 58.685 37.500 23.93 17.66 32.36 2.93
126 127 4.391523 GGTGTGTCTTTGCAAAACATGTTT 59.608 37.500 18.13 18.13 0.00 2.83
127 128 3.932089 GGTGTGTCTTTGCAAAACATGTT 59.068 39.130 21.65 4.92 0.00 2.71
128 129 3.520569 GGTGTGTCTTTGCAAAACATGT 58.479 40.909 21.65 0.00 0.00 3.21
129 130 2.865551 GGGTGTGTCTTTGCAAAACATG 59.134 45.455 21.65 9.34 0.00 3.21
130 131 2.765699 AGGGTGTGTCTTTGCAAAACAT 59.234 40.909 21.65 9.53 0.00 2.71
131 132 2.175202 AGGGTGTGTCTTTGCAAAACA 58.825 42.857 13.84 16.13 0.00 2.83
132 133 2.959507 AGGGTGTGTCTTTGCAAAAC 57.040 45.000 13.84 13.92 0.00 2.43
133 134 2.360801 GCTAGGGTGTGTCTTTGCAAAA 59.639 45.455 13.84 1.75 0.00 2.44
134 135 1.953686 GCTAGGGTGTGTCTTTGCAAA 59.046 47.619 12.14 12.14 0.00 3.68
135 136 1.133945 TGCTAGGGTGTGTCTTTGCAA 60.134 47.619 0.00 0.00 0.00 4.08
136 137 0.472044 TGCTAGGGTGTGTCTTTGCA 59.528 50.000 0.00 0.00 0.00 4.08
137 138 1.826385 ATGCTAGGGTGTGTCTTTGC 58.174 50.000 0.00 0.00 0.00 3.68
138 139 3.941483 CCTAATGCTAGGGTGTGTCTTTG 59.059 47.826 0.00 0.00 41.15 2.77
139 140 4.222124 CCTAATGCTAGGGTGTGTCTTT 57.778 45.455 0.00 0.00 41.15 2.52
140 141 3.914426 CCTAATGCTAGGGTGTGTCTT 57.086 47.619 0.00 0.00 41.15 3.01
150 151 7.047891 TGAAACTATCCAACACCTAATGCTAG 58.952 38.462 0.00 0.00 0.00 3.42
151 152 6.953101 TGAAACTATCCAACACCTAATGCTA 58.047 36.000 0.00 0.00 0.00 3.49
152 153 5.815581 TGAAACTATCCAACACCTAATGCT 58.184 37.500 0.00 0.00 0.00 3.79
153 154 6.238759 GGATGAAACTATCCAACACCTAATGC 60.239 42.308 0.00 0.00 44.90 3.56
154 155 7.264373 GGATGAAACTATCCAACACCTAATG 57.736 40.000 0.00 0.00 44.90 1.90
165 166 4.142381 GCAACCAACAGGATGAAACTATCC 60.142 45.833 0.00 0.00 45.71 2.59
166 167 4.458989 TGCAACCAACAGGATGAAACTATC 59.541 41.667 0.00 0.00 39.69 2.08
167 168 4.218417 GTGCAACCAACAGGATGAAACTAT 59.782 41.667 0.00 0.00 39.69 2.12
168 169 3.568007 GTGCAACCAACAGGATGAAACTA 59.432 43.478 0.00 0.00 39.69 2.24
169 170 2.362077 GTGCAACCAACAGGATGAAACT 59.638 45.455 0.00 0.00 39.69 2.66
170 171 2.100584 TGTGCAACCAACAGGATGAAAC 59.899 45.455 0.00 0.00 35.66 2.78
171 172 2.382882 TGTGCAACCAACAGGATGAAA 58.617 42.857 0.00 0.00 35.66 2.69
172 173 2.064434 TGTGCAACCAACAGGATGAA 57.936 45.000 0.00 0.00 35.66 2.57
173 174 2.291209 ATGTGCAACCAACAGGATGA 57.709 45.000 0.00 0.00 35.66 2.92
174 175 2.424601 CCTATGTGCAACCAACAGGATG 59.575 50.000 0.00 0.00 38.22 3.51
175 176 2.621407 CCCTATGTGCAACCAACAGGAT 60.621 50.000 8.93 0.00 34.36 3.24
176 177 1.271871 CCCTATGTGCAACCAACAGGA 60.272 52.381 8.93 0.00 34.36 3.86
177 178 1.176527 CCCTATGTGCAACCAACAGG 58.823 55.000 0.00 0.00 34.36 4.00
178 179 0.527565 GCCCTATGTGCAACCAACAG 59.472 55.000 0.00 0.00 34.36 3.16
179 180 0.178978 TGCCCTATGTGCAACCAACA 60.179 50.000 0.00 0.00 35.40 3.33
180 181 0.965439 TTGCCCTATGTGCAACCAAC 59.035 50.000 0.00 0.00 43.36 3.77
181 182 1.202989 TCTTGCCCTATGTGCAACCAA 60.203 47.619 0.00 0.00 43.36 3.67
182 183 0.403655 TCTTGCCCTATGTGCAACCA 59.596 50.000 0.00 0.00 43.36 3.67
183 184 1.098050 CTCTTGCCCTATGTGCAACC 58.902 55.000 0.00 0.00 43.36 3.77
184 185 1.740025 GACTCTTGCCCTATGTGCAAC 59.260 52.381 0.00 0.00 43.36 4.17
185 186 1.630369 AGACTCTTGCCCTATGTGCAA 59.370 47.619 0.00 0.00 45.83 4.08
186 187 1.279496 AGACTCTTGCCCTATGTGCA 58.721 50.000 0.00 0.00 36.84 4.57
187 188 2.012673 CAAGACTCTTGCCCTATGTGC 58.987 52.381 5.84 0.00 0.00 4.57
188 189 2.026822 ACCAAGACTCTTGCCCTATGTG 60.027 50.000 12.69 0.58 0.00 3.21
189 190 2.026822 CACCAAGACTCTTGCCCTATGT 60.027 50.000 12.69 2.44 0.00 2.29
190 191 2.237143 TCACCAAGACTCTTGCCCTATG 59.763 50.000 12.69 6.21 0.00 2.23
191 192 2.503356 CTCACCAAGACTCTTGCCCTAT 59.497 50.000 12.69 0.00 0.00 2.57
192 193 1.902508 CTCACCAAGACTCTTGCCCTA 59.097 52.381 12.69 0.00 0.00 3.53
193 194 0.689623 CTCACCAAGACTCTTGCCCT 59.310 55.000 12.69 0.00 0.00 5.19
194 195 0.322008 CCTCACCAAGACTCTTGCCC 60.322 60.000 12.69 0.00 0.00 5.36
195 196 0.398318 ACCTCACCAAGACTCTTGCC 59.602 55.000 12.69 0.00 0.00 4.52
196 197 2.933056 GCTACCTCACCAAGACTCTTGC 60.933 54.545 12.69 0.00 0.00 4.01
197 198 2.354203 GGCTACCTCACCAAGACTCTTG 60.354 54.545 11.37 11.37 0.00 3.02
198 199 1.903183 GGCTACCTCACCAAGACTCTT 59.097 52.381 0.00 0.00 0.00 2.85
199 200 1.077993 AGGCTACCTCACCAAGACTCT 59.922 52.381 0.00 0.00 0.00 3.24
200 201 1.205893 CAGGCTACCTCACCAAGACTC 59.794 57.143 0.00 0.00 0.00 3.36
201 202 1.270907 CAGGCTACCTCACCAAGACT 58.729 55.000 0.00 0.00 0.00 3.24
202 203 0.391793 GCAGGCTACCTCACCAAGAC 60.392 60.000 0.00 0.00 0.00 3.01
203 204 1.888436 CGCAGGCTACCTCACCAAGA 61.888 60.000 0.00 0.00 0.00 3.02
204 205 1.448540 CGCAGGCTACCTCACCAAG 60.449 63.158 0.00 0.00 0.00 3.61
205 206 2.662596 CGCAGGCTACCTCACCAA 59.337 61.111 0.00 0.00 0.00 3.67
206 207 3.390521 CCGCAGGCTACCTCACCA 61.391 66.667 0.00 0.00 46.14 4.17
218 219 0.654683 GACAGATTAGCAAGCCGCAG 59.345 55.000 0.00 0.00 46.13 5.18
219 220 0.036483 TGACAGATTAGCAAGCCGCA 60.036 50.000 0.00 0.00 46.13 5.69
220 221 0.654683 CTGACAGATTAGCAAGCCGC 59.345 55.000 0.00 0.00 42.91 6.53
221 222 1.929836 GTCTGACAGATTAGCAAGCCG 59.070 52.381 8.73 0.00 0.00 5.52
222 223 1.929836 CGTCTGACAGATTAGCAAGCC 59.070 52.381 8.73 0.00 0.00 4.35
223 224 2.600867 GACGTCTGACAGATTAGCAAGC 59.399 50.000 8.73 0.00 0.00 4.01
224 225 3.182967 GGACGTCTGACAGATTAGCAAG 58.817 50.000 16.46 0.00 0.00 4.01
225 226 2.560981 TGGACGTCTGACAGATTAGCAA 59.439 45.455 16.46 0.00 0.00 3.91
226 227 2.164422 CTGGACGTCTGACAGATTAGCA 59.836 50.000 16.46 0.00 34.21 3.49
227 228 2.803451 CTGGACGTCTGACAGATTAGC 58.197 52.381 16.46 0.00 34.21 3.09
228 229 2.164422 TGCTGGACGTCTGACAGATTAG 59.836 50.000 20.28 6.25 34.21 1.73
229 230 2.167662 TGCTGGACGTCTGACAGATTA 58.832 47.619 20.28 6.43 34.21 1.75
230 231 0.969149 TGCTGGACGTCTGACAGATT 59.031 50.000 20.28 0.00 34.21 2.40
231 232 0.969149 TTGCTGGACGTCTGACAGAT 59.031 50.000 20.28 0.00 34.21 2.90
232 233 0.750249 TTTGCTGGACGTCTGACAGA 59.250 50.000 20.28 0.00 34.21 3.41
233 234 1.462283 CATTTGCTGGACGTCTGACAG 59.538 52.381 16.46 14.98 35.40 3.51
234 235 1.511850 CATTTGCTGGACGTCTGACA 58.488 50.000 16.46 8.12 0.00 3.58
237 238 1.926511 GGCCATTTGCTGGACGTCTG 61.927 60.000 16.46 9.94 45.37 3.51
238 239 1.675641 GGCCATTTGCTGGACGTCT 60.676 57.895 16.46 0.00 45.37 4.18
239 240 2.877691 GGCCATTTGCTGGACGTC 59.122 61.111 7.13 7.13 45.37 4.34
245 246 1.294138 CCTGGTTGGCCATTTGCTG 59.706 57.895 6.09 0.00 45.05 4.41
246 247 3.795905 CCTGGTTGGCCATTTGCT 58.204 55.556 6.09 0.00 45.05 3.91
255 256 0.036388 TCGCTTCTTAGCCTGGTTGG 60.036 55.000 0.00 0.00 44.86 3.77
256 257 1.079503 GTCGCTTCTTAGCCTGGTTG 58.920 55.000 0.00 0.00 44.86 3.77
257 258 0.685097 TGTCGCTTCTTAGCCTGGTT 59.315 50.000 0.00 0.00 44.86 3.67
258 259 0.905357 ATGTCGCTTCTTAGCCTGGT 59.095 50.000 0.00 0.00 44.86 4.00
259 260 1.137872 AGATGTCGCTTCTTAGCCTGG 59.862 52.381 0.00 0.00 44.86 4.45
260 261 2.593346 AGATGTCGCTTCTTAGCCTG 57.407 50.000 0.00 0.00 44.86 4.85
261 262 4.314740 CTAAGATGTCGCTTCTTAGCCT 57.685 45.455 19.44 1.93 43.24 4.58
265 266 4.744570 CACCACTAAGATGTCGCTTCTTA 58.255 43.478 11.69 11.69 35.19 2.10
266 267 3.589988 CACCACTAAGATGTCGCTTCTT 58.410 45.455 10.93 10.93 37.25 2.52
267 268 2.675317 GCACCACTAAGATGTCGCTTCT 60.675 50.000 0.00 0.00 0.00 2.85
268 269 1.661112 GCACCACTAAGATGTCGCTTC 59.339 52.381 0.00 0.00 0.00 3.86
269 270 1.276421 AGCACCACTAAGATGTCGCTT 59.724 47.619 0.00 0.00 0.00 4.68
270 271 0.898320 AGCACCACTAAGATGTCGCT 59.102 50.000 0.00 0.00 0.00 4.93
271 272 1.726853 AAGCACCACTAAGATGTCGC 58.273 50.000 0.00 0.00 0.00 5.19
272 273 2.416547 CCAAAGCACCACTAAGATGTCG 59.583 50.000 0.00 0.00 0.00 4.35
273 274 2.749621 CCCAAAGCACCACTAAGATGTC 59.250 50.000 0.00 0.00 0.00 3.06
274 275 2.108250 ACCCAAAGCACCACTAAGATGT 59.892 45.455 0.00 0.00 0.00 3.06
275 276 2.795329 ACCCAAAGCACCACTAAGATG 58.205 47.619 0.00 0.00 0.00 2.90
276 277 3.525800 AACCCAAAGCACCACTAAGAT 57.474 42.857 0.00 0.00 0.00 2.40
277 278 3.306472 AAACCCAAAGCACCACTAAGA 57.694 42.857 0.00 0.00 0.00 2.10
278 279 3.383185 TGAAAACCCAAAGCACCACTAAG 59.617 43.478 0.00 0.00 0.00 2.18
279 280 3.366396 TGAAAACCCAAAGCACCACTAA 58.634 40.909 0.00 0.00 0.00 2.24
280 281 3.019799 TGAAAACCCAAAGCACCACTA 57.980 42.857 0.00 0.00 0.00 2.74
281 282 1.859302 TGAAAACCCAAAGCACCACT 58.141 45.000 0.00 0.00 0.00 4.00
282 283 2.093711 ACTTGAAAACCCAAAGCACCAC 60.094 45.455 0.00 0.00 0.00 4.16
283 284 2.093764 CACTTGAAAACCCAAAGCACCA 60.094 45.455 0.00 0.00 0.00 4.17
284 285 2.167487 TCACTTGAAAACCCAAAGCACC 59.833 45.455 0.00 0.00 0.00 5.01
285 286 3.518634 TCACTTGAAAACCCAAAGCAC 57.481 42.857 0.00 0.00 0.00 4.40
286 287 4.440880 CATTCACTTGAAAACCCAAAGCA 58.559 39.130 0.00 0.00 37.61 3.91
287 288 3.248363 GCATTCACTTGAAAACCCAAAGC 59.752 43.478 0.00 0.00 37.61 3.51
288 289 3.809279 GGCATTCACTTGAAAACCCAAAG 59.191 43.478 0.00 0.00 37.61 2.77
289 290 3.739519 CGGCATTCACTTGAAAACCCAAA 60.740 43.478 0.00 0.00 37.61 3.28
290 291 2.223923 CGGCATTCACTTGAAAACCCAA 60.224 45.455 0.00 0.00 37.61 4.12
291 292 1.339610 CGGCATTCACTTGAAAACCCA 59.660 47.619 0.00 0.00 37.61 4.51
292 293 1.339929 ACGGCATTCACTTGAAAACCC 59.660 47.619 0.00 0.00 37.61 4.11
293 294 2.793278 ACGGCATTCACTTGAAAACC 57.207 45.000 0.00 0.23 37.61 3.27
294 295 3.964909 AGAACGGCATTCACTTGAAAAC 58.035 40.909 0.00 0.00 40.09 2.43
295 296 4.142271 ACAAGAACGGCATTCACTTGAAAA 60.142 37.500 0.00 0.00 40.09 2.29
296 297 3.380004 ACAAGAACGGCATTCACTTGAAA 59.620 39.130 0.00 0.00 40.09 2.69
297 298 2.948979 ACAAGAACGGCATTCACTTGAA 59.051 40.909 0.00 0.00 40.09 2.69
298 299 2.290367 CACAAGAACGGCATTCACTTGA 59.710 45.455 0.00 0.00 40.09 3.02
299 300 2.605338 CCACAAGAACGGCATTCACTTG 60.605 50.000 0.00 0.00 40.09 3.16
300 301 1.608590 CCACAAGAACGGCATTCACTT 59.391 47.619 0.00 0.00 40.09 3.16
301 302 1.202758 TCCACAAGAACGGCATTCACT 60.203 47.619 0.00 0.00 40.09 3.41
302 303 1.069227 GTCCACAAGAACGGCATTCAC 60.069 52.381 0.00 0.00 40.09 3.18
303 304 1.234821 GTCCACAAGAACGGCATTCA 58.765 50.000 0.00 0.00 40.09 2.57
304 305 1.069227 GTGTCCACAAGAACGGCATTC 60.069 52.381 0.00 0.00 37.62 2.67
305 306 0.951558 GTGTCCACAAGAACGGCATT 59.048 50.000 0.00 0.00 0.00 3.56
306 307 0.889186 GGTGTCCACAAGAACGGCAT 60.889 55.000 0.00 0.00 0.00 4.40
307 308 1.525077 GGTGTCCACAAGAACGGCA 60.525 57.895 0.00 0.00 0.00 5.69
308 309 1.227853 AGGTGTCCACAAGAACGGC 60.228 57.895 0.00 0.00 0.00 5.68
309 310 0.393077 AGAGGTGTCCACAAGAACGG 59.607 55.000 0.00 0.00 0.00 4.44
310 311 1.784525 GAGAGGTGTCCACAAGAACG 58.215 55.000 0.00 0.00 0.00 3.95
311 312 1.340248 TCGAGAGGTGTCCACAAGAAC 59.660 52.381 0.00 0.00 0.00 3.01
312 313 1.340248 GTCGAGAGGTGTCCACAAGAA 59.660 52.381 0.00 0.00 0.00 2.52
313 314 0.959553 GTCGAGAGGTGTCCACAAGA 59.040 55.000 0.00 0.00 0.00 3.02
314 315 0.038159 GGTCGAGAGGTGTCCACAAG 60.038 60.000 0.00 0.00 0.00 3.16
315 316 1.469335 GGGTCGAGAGGTGTCCACAA 61.469 60.000 0.00 0.00 0.00 3.33
316 317 1.906824 GGGTCGAGAGGTGTCCACA 60.907 63.158 0.00 0.00 0.00 4.17
317 318 1.258445 ATGGGTCGAGAGGTGTCCAC 61.258 60.000 0.00 0.00 0.00 4.02
318 319 0.333652 TATGGGTCGAGAGGTGTCCA 59.666 55.000 0.00 0.00 0.00 4.02
319 320 1.481871 TTATGGGTCGAGAGGTGTCC 58.518 55.000 0.00 0.00 0.00 4.02
320 321 2.418334 GGTTTATGGGTCGAGAGGTGTC 60.418 54.545 0.00 0.00 0.00 3.67
321 322 1.553704 GGTTTATGGGTCGAGAGGTGT 59.446 52.381 0.00 0.00 0.00 4.16
322 323 1.470979 CGGTTTATGGGTCGAGAGGTG 60.471 57.143 0.00 0.00 0.00 4.00
323 324 0.822164 CGGTTTATGGGTCGAGAGGT 59.178 55.000 0.00 0.00 0.00 3.85
324 325 0.104304 CCGGTTTATGGGTCGAGAGG 59.896 60.000 0.00 0.00 0.00 3.69
325 326 0.104304 CCCGGTTTATGGGTCGAGAG 59.896 60.000 0.00 0.00 42.07 3.20
326 327 2.204748 CCCGGTTTATGGGTCGAGA 58.795 57.895 0.00 0.00 42.07 4.04
327 328 4.848685 CCCGGTTTATGGGTCGAG 57.151 61.111 0.00 0.00 42.07 4.04
333 334 0.608035 ATATGCGGCCCGGTTTATGG 60.608 55.000 4.77 0.00 0.00 2.74
334 335 0.521291 CATATGCGGCCCGGTTTATG 59.479 55.000 4.77 0.00 0.00 1.90
335 336 1.241315 GCATATGCGGCCCGGTTTAT 61.241 55.000 12.82 0.00 0.00 1.40
336 337 1.894756 GCATATGCGGCCCGGTTTA 60.895 57.895 12.82 0.00 0.00 2.01
337 338 3.216292 GCATATGCGGCCCGGTTT 61.216 61.111 12.82 0.00 0.00 3.27
354 355 0.876342 GAAATACTCAGCCCGCTCGG 60.876 60.000 0.48 0.48 0.00 4.63
355 356 0.876342 GGAAATACTCAGCCCGCTCG 60.876 60.000 0.00 0.00 0.00 5.03
356 357 0.533085 GGGAAATACTCAGCCCGCTC 60.533 60.000 0.00 0.00 0.00 5.03
357 358 1.527370 GGGAAATACTCAGCCCGCT 59.473 57.895 0.00 0.00 0.00 5.52
358 359 4.142780 GGGAAATACTCAGCCCGC 57.857 61.111 0.00 0.00 0.00 6.13
360 361 1.095807 GCACGGGAAATACTCAGCCC 61.096 60.000 0.00 0.00 37.21 5.19
361 362 0.107654 AGCACGGGAAATACTCAGCC 60.108 55.000 0.00 0.00 0.00 4.85
362 363 1.739067 AAGCACGGGAAATACTCAGC 58.261 50.000 0.00 0.00 0.00 4.26
363 364 3.127030 GGAAAAGCACGGGAAATACTCAG 59.873 47.826 0.00 0.00 0.00 3.35
364 365 3.078837 GGAAAAGCACGGGAAATACTCA 58.921 45.455 0.00 0.00 0.00 3.41
365 366 2.422479 GGGAAAAGCACGGGAAATACTC 59.578 50.000 0.00 0.00 0.00 2.59
366 367 2.224917 TGGGAAAAGCACGGGAAATACT 60.225 45.455 0.00 0.00 0.00 2.12
367 368 2.094906 GTGGGAAAAGCACGGGAAATAC 60.095 50.000 0.00 0.00 0.00 1.89
368 369 2.164338 GTGGGAAAAGCACGGGAAATA 58.836 47.619 0.00 0.00 0.00 1.40
369 370 0.966179 GTGGGAAAAGCACGGGAAAT 59.034 50.000 0.00 0.00 0.00 2.17
370 371 1.110518 GGTGGGAAAAGCACGGGAAA 61.111 55.000 0.00 0.00 0.00 3.13
371 372 1.529713 GGTGGGAAAAGCACGGGAA 60.530 57.895 0.00 0.00 0.00 3.97
372 373 2.114411 GGTGGGAAAAGCACGGGA 59.886 61.111 0.00 0.00 0.00 5.14
373 374 2.989253 GGGTGGGAAAAGCACGGG 60.989 66.667 0.00 0.00 0.00 5.28
374 375 2.203422 TGGGTGGGAAAAGCACGG 60.203 61.111 0.00 0.00 0.00 4.94
375 376 2.903547 CGTGGGTGGGAAAAGCACG 61.904 63.158 0.00 0.00 0.00 5.34
376 377 1.792118 GACGTGGGTGGGAAAAGCAC 61.792 60.000 0.00 0.00 0.00 4.40
377 378 1.527380 GACGTGGGTGGGAAAAGCA 60.527 57.895 0.00 0.00 0.00 3.91
378 379 2.265904 GGACGTGGGTGGGAAAAGC 61.266 63.158 0.00 0.00 0.00 3.51
379 380 0.251165 ATGGACGTGGGTGGGAAAAG 60.251 55.000 0.00 0.00 0.00 2.27
380 381 0.186386 AATGGACGTGGGTGGGAAAA 59.814 50.000 0.00 0.00 0.00 2.29
381 382 0.186386 AAATGGACGTGGGTGGGAAA 59.814 50.000 0.00 0.00 0.00 3.13
382 383 0.538516 CAAATGGACGTGGGTGGGAA 60.539 55.000 0.00 0.00 0.00 3.97
383 384 1.074072 CAAATGGACGTGGGTGGGA 59.926 57.895 0.00 0.00 0.00 4.37
384 385 1.228429 ACAAATGGACGTGGGTGGG 60.228 57.895 0.00 0.00 0.00 4.61
385 386 1.573829 CGACAAATGGACGTGGGTGG 61.574 60.000 0.00 0.00 0.00 4.61
386 387 0.882927 ACGACAAATGGACGTGGGTG 60.883 55.000 0.00 0.00 38.79 4.61
387 388 0.601841 GACGACAAATGGACGTGGGT 60.602 55.000 11.25 0.00 40.29 4.51
388 389 0.320421 AGACGACAAATGGACGTGGG 60.320 55.000 11.25 0.00 40.29 4.61
389 390 1.068474 GAGACGACAAATGGACGTGG 58.932 55.000 11.25 0.00 40.29 4.94
390 391 1.721389 CAGAGACGACAAATGGACGTG 59.279 52.381 11.25 0.00 40.29 4.49
391 392 1.611977 TCAGAGACGACAAATGGACGT 59.388 47.619 7.40 7.40 42.84 4.34
392 393 2.254459 CTCAGAGACGACAAATGGACG 58.746 52.381 0.00 0.00 0.00 4.79
393 394 1.996191 GCTCAGAGACGACAAATGGAC 59.004 52.381 0.00 0.00 0.00 4.02
394 395 1.402852 CGCTCAGAGACGACAAATGGA 60.403 52.381 0.00 0.00 0.00 3.41
395 396 0.994995 CGCTCAGAGACGACAAATGG 59.005 55.000 0.00 0.00 0.00 3.16
396 397 0.368227 GCGCTCAGAGACGACAAATG 59.632 55.000 15.69 0.00 0.00 2.32
397 398 0.038251 TGCGCTCAGAGACGACAAAT 60.038 50.000 9.73 0.00 0.00 2.32
398 399 0.038251 ATGCGCTCAGAGACGACAAA 60.038 50.000 9.73 1.89 0.00 2.83
399 400 0.456824 GATGCGCTCAGAGACGACAA 60.457 55.000 9.73 3.82 0.00 3.18
400 401 1.137614 GATGCGCTCAGAGACGACA 59.862 57.895 9.73 13.01 0.00 4.35
401 402 1.587613 GGATGCGCTCAGAGACGAC 60.588 63.158 9.73 9.02 0.00 4.34
402 403 2.801421 GGATGCGCTCAGAGACGA 59.199 61.111 9.73 4.47 0.00 4.20
403 404 2.653448 CGGATGCGCTCAGAGACG 60.653 66.667 9.73 5.76 0.00 4.18
404 405 1.299014 CTCGGATGCGCTCAGAGAC 60.299 63.158 22.54 0.00 45.81 3.36
405 406 3.114650 CTCGGATGCGCTCAGAGA 58.885 61.111 22.54 10.63 45.81 3.10
406 407 1.299014 GTCTCGGATGCGCTCAGAG 60.299 63.158 21.64 21.64 44.72 3.35
407 408 2.775856 GGTCTCGGATGCGCTCAGA 61.776 63.158 9.73 9.08 0.00 3.27
408 409 2.279120 GGTCTCGGATGCGCTCAG 60.279 66.667 9.73 4.79 0.00 3.35
409 410 3.068064 TGGTCTCGGATGCGCTCA 61.068 61.111 9.73 0.00 0.00 4.26
410 411 2.279120 CTGGTCTCGGATGCGCTC 60.279 66.667 9.73 3.37 0.00 5.03
411 412 4.521062 GCTGGTCTCGGATGCGCT 62.521 66.667 9.73 0.00 0.00 5.92
412 413 4.819761 TGCTGGTCTCGGATGCGC 62.820 66.667 0.00 0.00 0.00 6.09
413 414 2.107750 ATGCTGGTCTCGGATGCG 59.892 61.111 0.00 0.00 0.00 4.73
414 415 1.890979 CCATGCTGGTCTCGGATGC 60.891 63.158 0.00 0.00 31.35 3.91
415 416 4.451241 CCATGCTGGTCTCGGATG 57.549 61.111 0.00 0.00 31.35 3.51
428 429 3.922240 CGGAAAGAATCAAGCAAACCATG 59.078 43.478 0.00 0.00 0.00 3.66
429 430 3.056607 CCGGAAAGAATCAAGCAAACCAT 60.057 43.478 0.00 0.00 0.00 3.55
430 431 2.295909 CCGGAAAGAATCAAGCAAACCA 59.704 45.455 0.00 0.00 0.00 3.67
431 432 2.296190 ACCGGAAAGAATCAAGCAAACC 59.704 45.455 9.46 0.00 0.00 3.27
432 433 3.643159 ACCGGAAAGAATCAAGCAAAC 57.357 42.857 9.46 0.00 0.00 2.93
433 434 5.391523 CGAATACCGGAAAGAATCAAGCAAA 60.392 40.000 9.46 0.00 33.91 3.68
434 435 4.094294 CGAATACCGGAAAGAATCAAGCAA 59.906 41.667 9.46 0.00 33.91 3.91
435 436 3.621268 CGAATACCGGAAAGAATCAAGCA 59.379 43.478 9.46 0.00 33.91 3.91
436 437 4.197107 CGAATACCGGAAAGAATCAAGC 57.803 45.455 9.46 0.00 33.91 4.01
449 450 1.401552 TGTAAGGTCGACCGAATACCG 59.598 52.381 29.15 0.00 42.08 4.02
450 451 3.442100 CTTGTAAGGTCGACCGAATACC 58.558 50.000 29.15 18.11 42.08 2.73
451 452 3.442100 CCTTGTAAGGTCGACCGAATAC 58.558 50.000 28.26 27.68 41.41 1.89
452 453 3.788333 CCTTGTAAGGTCGACCGAATA 57.212 47.619 28.26 19.21 41.41 1.75
453 454 2.667473 CCTTGTAAGGTCGACCGAAT 57.333 50.000 28.26 20.21 41.41 3.34
464 465 2.069273 CAAGCGAGTCCACCTTGTAAG 58.931 52.381 0.00 0.00 33.17 2.34
465 466 1.414919 ACAAGCGAGTCCACCTTGTAA 59.585 47.619 13.68 0.00 45.14 2.41
466 467 1.045407 ACAAGCGAGTCCACCTTGTA 58.955 50.000 13.68 0.00 45.14 2.41
467 468 1.830145 ACAAGCGAGTCCACCTTGT 59.170 52.632 10.87 10.87 42.99 3.16
468 469 2.069273 CTTACAAGCGAGTCCACCTTG 58.931 52.381 9.89 9.89 41.20 3.61
469 470 1.002087 CCTTACAAGCGAGTCCACCTT 59.998 52.381 0.00 0.00 0.00 3.50
470 471 0.608640 CCTTACAAGCGAGTCCACCT 59.391 55.000 0.00 0.00 0.00 4.00
471 472 0.320697 ACCTTACAAGCGAGTCCACC 59.679 55.000 0.00 0.00 0.00 4.61
472 473 1.798813 CAACCTTACAAGCGAGTCCAC 59.201 52.381 0.00 0.00 0.00 4.02
473 474 1.414919 ACAACCTTACAAGCGAGTCCA 59.585 47.619 0.00 0.00 0.00 4.02
474 475 2.165319 ACAACCTTACAAGCGAGTCC 57.835 50.000 0.00 0.00 0.00 3.85
475 476 5.662211 TTTTACAACCTTACAAGCGAGTC 57.338 39.130 0.00 0.00 0.00 3.36
476 477 4.024302 GCTTTTACAACCTTACAAGCGAGT 60.024 41.667 0.00 0.00 0.00 4.18
477 478 4.213482 AGCTTTTACAACCTTACAAGCGAG 59.787 41.667 0.00 0.00 41.25 5.03
478 479 4.131596 AGCTTTTACAACCTTACAAGCGA 58.868 39.130 0.00 0.00 41.25 4.93
479 480 4.483476 AGCTTTTACAACCTTACAAGCG 57.517 40.909 0.00 0.00 41.25 4.68
548 569 6.817184 AGATACAATGATACCACACCAGTAC 58.183 40.000 0.00 0.00 0.00 2.73
554 575 5.305644 AGGGAGAGATACAATGATACCACAC 59.694 44.000 0.00 0.00 0.00 3.82
555 576 5.467738 AGGGAGAGATACAATGATACCACA 58.532 41.667 0.00 0.00 0.00 4.17
556 577 5.046950 GGAGGGAGAGATACAATGATACCAC 60.047 48.000 0.00 0.00 0.00 4.16
558 579 5.337788 AGGAGGGAGAGATACAATGATACC 58.662 45.833 0.00 0.00 0.00 2.73
559 580 7.406916 TCTAGGAGGGAGAGATACAATGATAC 58.593 42.308 0.00 0.00 0.00 2.24
570 606 0.181587 CGTGCTCTAGGAGGGAGAGA 59.818 60.000 3.87 0.00 42.69 3.10
661 697 4.785453 CCCTTGCGCTCCCTCCAC 62.785 72.222 9.73 0.00 0.00 4.02
684 720 9.674068 GGGGCAGTCCAAATAAATAAATAAAAA 57.326 29.630 0.00 0.00 37.22 1.94
689 725 5.130311 GGTGGGGCAGTCCAAATAAATAAAT 59.870 40.000 0.00 0.00 38.72 1.40
693 729 2.466846 GGTGGGGCAGTCCAAATAAAT 58.533 47.619 0.00 0.00 38.72 1.40
694 730 1.888826 CGGTGGGGCAGTCCAAATAAA 60.889 52.381 0.00 0.00 38.72 1.40
695 731 0.322997 CGGTGGGGCAGTCCAAATAA 60.323 55.000 0.00 0.00 38.72 1.40
696 732 1.301623 CGGTGGGGCAGTCCAAATA 59.698 57.895 0.00 0.00 38.72 1.40
697 733 2.035626 CGGTGGGGCAGTCCAAAT 59.964 61.111 0.00 0.00 38.72 2.32
720 756 1.372872 GCAAAGTCGCCGGCAAAAT 60.373 52.632 28.98 10.48 0.00 1.82
740 776 0.800012 TTGAATCCTTTACGCGCCAC 59.200 50.000 5.73 0.00 0.00 5.01
750 789 6.790232 TTGAGTTTGGAACTTTGAATCCTT 57.210 33.333 0.00 0.00 43.03 3.36
751 790 6.790232 TTTGAGTTTGGAACTTTGAATCCT 57.210 33.333 0.00 0.00 43.03 3.24
753 792 6.257849 GGGTTTTGAGTTTGGAACTTTGAATC 59.742 38.462 0.00 0.00 43.03 2.52
754 793 6.112734 GGGTTTTGAGTTTGGAACTTTGAAT 58.887 36.000 0.00 0.00 43.03 2.57
756 795 4.081365 GGGGTTTTGAGTTTGGAACTTTGA 60.081 41.667 0.00 0.00 43.03 2.69
757 796 4.188462 GGGGTTTTGAGTTTGGAACTTTG 58.812 43.478 0.00 0.00 43.03 2.77
764 805 0.671796 GTCGGGGGTTTTGAGTTTGG 59.328 55.000 0.00 0.00 0.00 3.28
776 817 4.891727 CCGCAGATTCGTCGGGGG 62.892 72.222 10.50 0.00 39.52 5.40
778 819 2.278857 CTCCGCAGATTCGTCGGG 60.279 66.667 15.95 6.72 43.10 5.14
792 833 0.538287 AAGCAAGCAGTGGGTTCTCC 60.538 55.000 0.00 0.00 30.99 3.71
794 835 1.458639 GCAAGCAAGCAGTGGGTTCT 61.459 55.000 0.00 0.00 30.99 3.01
795 836 1.006922 GCAAGCAAGCAGTGGGTTC 60.007 57.895 0.00 0.00 30.99 3.62
798 839 2.649034 CAGCAAGCAAGCAGTGGG 59.351 61.111 3.19 0.00 36.85 4.61
799 840 2.049433 GCAGCAAGCAAGCAGTGG 60.049 61.111 3.19 0.00 44.79 4.00
844 888 1.003839 TGATTGGTGGTCTCGTGGC 60.004 57.895 0.00 0.00 0.00 5.01
919 968 0.962356 AGCAGTGAATGGGGAAAGCG 60.962 55.000 0.00 0.00 0.00 4.68
957 1006 2.935740 CGAGTGTGAGCAGGGCAGA 61.936 63.158 0.00 0.00 0.00 4.26
960 1009 3.941657 GACCGAGTGTGAGCAGGGC 62.942 68.421 0.00 0.00 0.00 5.19
962 1011 1.214062 GAGACCGAGTGTGAGCAGG 59.786 63.158 0.00 0.00 0.00 4.85
971 1020 2.653702 GCTGCAGTGAGACCGAGT 59.346 61.111 16.64 0.00 0.00 4.18
975 1024 2.125753 CTCCGCTGCAGTGAGACC 60.126 66.667 28.54 2.52 0.00 3.85
976 1025 2.813042 GCTCCGCTGCAGTGAGAC 60.813 66.667 28.54 17.67 0.00 3.36
986 1035 2.124819 CCATTGCTCAGCTCCGCT 60.125 61.111 0.00 0.00 40.77 5.52
987 1036 3.885521 GCCATTGCTCAGCTCCGC 61.886 66.667 0.00 0.00 33.53 5.54
988 1037 1.783031 GATGCCATTGCTCAGCTCCG 61.783 60.000 0.00 0.00 38.71 4.63
989 1038 1.453762 GGATGCCATTGCTCAGCTCC 61.454 60.000 0.00 0.00 38.71 4.70
1005 1057 2.034687 AGCAACAGCGCCTTGGAT 59.965 55.556 15.23 0.00 0.00 3.41
1058 1110 4.771356 CGATGTGGTCCGTCGCGT 62.771 66.667 5.77 0.00 44.85 6.01
1171 1235 1.202770 AGGTCGAGGTGAGGGTTTTTG 60.203 52.381 0.00 0.00 0.00 2.44
1185 1249 3.231818 AGGTGAAGAAAAGAGAGGTCGA 58.768 45.455 0.00 0.00 0.00 4.20
1186 1250 3.257127 AGAGGTGAAGAAAAGAGAGGTCG 59.743 47.826 0.00 0.00 0.00 4.79
1187 1251 4.565022 CAGAGGTGAAGAAAAGAGAGGTC 58.435 47.826 0.00 0.00 0.00 3.85
1188 1252 3.244387 GCAGAGGTGAAGAAAAGAGAGGT 60.244 47.826 0.00 0.00 0.00 3.85
1259 1356 0.543749 GGAATGAGTGAGGGTGGAGG 59.456 60.000 0.00 0.00 0.00 4.30
1260 1357 1.209019 CAGGAATGAGTGAGGGTGGAG 59.791 57.143 0.00 0.00 0.00 3.86
1261 1358 1.203300 TCAGGAATGAGTGAGGGTGGA 60.203 52.381 0.00 0.00 0.00 4.02
1262 1359 1.279496 TCAGGAATGAGTGAGGGTGG 58.721 55.000 0.00 0.00 0.00 4.61
1263 1360 3.641434 AATCAGGAATGAGTGAGGGTG 57.359 47.619 0.00 0.00 0.00 4.61
1264 1361 3.875369 GCAAATCAGGAATGAGTGAGGGT 60.875 47.826 0.00 0.00 0.00 4.34
1265 1362 2.686915 GCAAATCAGGAATGAGTGAGGG 59.313 50.000 0.00 0.00 0.00 4.30
1411 1513 0.984995 AAGAAGTAGGTGCCTGGGTC 59.015 55.000 0.12 0.00 0.00 4.46
1416 1518 2.093235 GCAGATGAAGAAGTAGGTGCCT 60.093 50.000 0.00 0.00 0.00 4.75
1483 1585 1.599240 GATCGAAGATGCCAGGGGC 60.599 63.158 0.00 0.00 45.16 5.80
1484 1586 0.034616 GAGATCGAAGATGCCAGGGG 59.965 60.000 0.00 0.00 45.12 4.79
1485 1587 0.319383 CGAGATCGAAGATGCCAGGG 60.319 60.000 0.00 0.00 45.12 4.45
1486 1588 0.319383 CCGAGATCGAAGATGCCAGG 60.319 60.000 3.31 0.00 45.12 4.45
1487 1589 0.943359 GCCGAGATCGAAGATGCCAG 60.943 60.000 3.31 0.00 45.12 4.85
1488 1590 1.068083 GCCGAGATCGAAGATGCCA 59.932 57.895 3.31 0.00 45.12 4.92
1647 1767 1.263484 GGTCAATCGCTGCAGATGATG 59.737 52.381 20.43 10.64 0.00 3.07
1668 1788 4.648762 AGACTAGATTGGAGACCATGTCTG 59.351 45.833 0.69 8.02 43.53 3.51
1681 1801 4.780815 TGCACCCCAATTAGACTAGATTG 58.219 43.478 0.00 0.00 33.97 2.67
1700 1824 5.586243 CAGGAAAGCTAGCTAGTTAAATGCA 59.414 40.000 19.70 0.00 0.00 3.96
1738 1862 1.269166 GAAATCGACGATGCAGACGT 58.731 50.000 18.86 18.86 46.58 4.34
1740 1864 1.514811 CTCGAAATCGACGATGCAGAC 59.485 52.381 11.83 1.15 44.22 3.51
1746 1870 2.681848 ACTGGTACTCGAAATCGACGAT 59.318 45.455 4.05 4.05 44.22 3.73
1747 1871 2.079158 ACTGGTACTCGAAATCGACGA 58.921 47.619 0.00 0.00 44.22 4.20
1748 1872 2.539346 ACTGGTACTCGAAATCGACG 57.461 50.000 0.58 1.62 44.22 5.12
1749 1873 4.871993 TCTACTGGTACTCGAAATCGAC 57.128 45.455 0.58 0.00 44.22 4.20
1751 1875 5.579718 ACATTCTACTGGTACTCGAAATCG 58.420 41.667 0.00 0.00 41.45 3.34
1752 1876 7.705214 AGTACATTCTACTGGTACTCGAAATC 58.295 38.462 0.00 0.00 42.94 2.17
1763 1887 6.703607 GGTCATTCATGAGTACATTCTACTGG 59.296 42.308 0.00 0.00 37.51 4.00
1837 1962 3.950395 GGTGGATAAATTGCAGAGCTTCT 59.050 43.478 0.00 0.00 0.00 2.85
1838 1963 3.696051 TGGTGGATAAATTGCAGAGCTTC 59.304 43.478 0.00 0.00 0.00 3.86
1968 2108 5.174035 GTCTGATCGGTGATAGACAAAATCG 59.826 44.000 0.42 0.00 39.39 3.34
2015 2156 3.521529 AAACAGCAGCGCTCCGAGT 62.522 57.895 7.13 0.00 36.40 4.18
2091 2232 2.938798 ATGCCCCAAAGACCCCGA 60.939 61.111 0.00 0.00 0.00 5.14
2171 2312 8.906867 ACAGATTATGAAATCCCACATTGTAAG 58.093 33.333 0.00 0.00 42.20 2.34
2198 2339 6.320418 TCTGTCGAAGCAACTAAGACCATATA 59.680 38.462 0.00 0.00 0.00 0.86
2204 2345 3.057456 TCCTCTGTCGAAGCAACTAAGAC 60.057 47.826 0.00 0.00 0.00 3.01
2205 2346 3.154710 TCCTCTGTCGAAGCAACTAAGA 58.845 45.455 0.00 0.00 0.00 2.10
2206 2347 3.577649 TCCTCTGTCGAAGCAACTAAG 57.422 47.619 0.00 0.00 0.00 2.18
2207 2348 4.330944 TTTCCTCTGTCGAAGCAACTAA 57.669 40.909 0.00 0.00 0.00 2.24
2208 2349 4.307432 CTTTTCCTCTGTCGAAGCAACTA 58.693 43.478 0.00 0.00 0.00 2.24
2209 2350 2.910688 TTTCCTCTGTCGAAGCAACT 57.089 45.000 0.00 0.00 0.00 3.16
2218 2359 3.189495 GGTAAGCAAGCTTTTCCTCTGTC 59.811 47.826 13.06 0.00 37.47 3.51
2219 2360 3.149981 GGTAAGCAAGCTTTTCCTCTGT 58.850 45.455 13.06 0.00 37.47 3.41
2229 2370 2.356667 GGCCCAGGTAAGCAAGCT 59.643 61.111 0.00 0.00 35.94 3.74
2230 2371 3.134127 CGGCCCAGGTAAGCAAGC 61.134 66.667 0.00 0.00 0.00 4.01
2291 2432 2.047274 TACCAAGTCGGCTGCAGC 60.047 61.111 30.88 30.88 39.03 5.25
2292 2433 1.448540 CCTACCAAGTCGGCTGCAG 60.449 63.158 10.11 10.11 39.03 4.41
2293 2434 2.662596 CCTACCAAGTCGGCTGCA 59.337 61.111 0.50 0.00 39.03 4.41
2348 2489 1.066787 GCTCAAGAAGCCTACCGAGTT 60.067 52.381 0.00 0.00 45.92 3.01
2350 2491 3.354131 GCTCAAGAAGCCTACCGAG 57.646 57.895 0.00 0.00 45.92 4.63
2407 2548 4.704833 TTGGCGCCTGAGAGTGGC 62.705 66.667 29.70 0.00 46.42 5.01
2434 2575 1.672881 GCTGTGTGTGAGAAAGTGCTT 59.327 47.619 0.00 0.00 0.00 3.91
2440 2581 4.281941 AGTCTATCTGCTGTGTGTGAGAAA 59.718 41.667 0.00 0.00 0.00 2.52
2452 2593 3.430453 GCAGGAGGATAGTCTATCTGCT 58.570 50.000 17.50 11.78 39.17 4.24
2474 2615 6.059484 TCATATACCGGGAGTTTGAAAATCC 58.941 40.000 15.49 15.49 0.00 3.01
2484 2625 3.889859 TGGTACTCATATACCGGGAGT 57.110 47.619 6.32 11.07 46.72 3.85
2486 2627 5.477984 GTGTTATGGTACTCATATACCGGGA 59.522 44.000 6.32 0.00 46.72 5.14
2489 2630 8.019669 GTGTAGTGTTATGGTACTCATATACCG 58.980 40.741 5.29 0.00 46.72 4.02
2537 2680 1.461127 CTGTAAGCACCTCTGTTTCGC 59.539 52.381 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.