>input_sequence_73451
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--------AT---GGCATCCAAGGCGCTGTTGCTGGCCGTGGCCGTGGCCGTGGCGGCGGGGTGCGCGGA----------
--CGCGACGGACCACATCGTGGGGGCCAACCGCGGGTGGAACCCCAACATCAACTACTCCGGCTGGTCCGCCAACCAGAC
CTTCTACGCCGGCGACCTCATCTGTATGCCCAAACAAAAACCCTCACCTCGAC-------CTCTCTTTTCTTCACCTCTG
CCTCCCCTCCA------------CTAGCTCCAGCTCCACCAGATCTACTACG--------------TCCCTGCCGCCTCC
ACCCTCACTCATTCCTGATTT-----GCAGCGTTCCGGTACCAGAAGGGGACGCACAACGTGTTCGCGGTGAACGAGACG
GGCTACGACAACTGCACCATGGCCGGGGTCACCGGCAACTGGACCTCCGGCAAGGACTTCATCCCGCTCCCGGACCCAGG
CACCTACTTCTTCATCTGCGGCAACGGCTTCTGCCAGGCCGGCATGAAGGTCGCCATCACCGTCGCCCCTGGCATCTTCG
ATCTCGGCCCACAGATCTACCCCCCGCCCGCCCCCGGCGCCGACAACCCA------------TC------CGCCTCCTTC
ACCGCAGGGGCGTGGCCGGCAGCGGCAGCGGTGGTCACCGCGCTGGGAGCTGCTGCCATCATTGCCCTTTAG--------
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>chr5B_1_TraesCS5B01G362200
GACACTTGGCTCTAGTTGCTTTCCGGTTGGTTGAGCTTTCATCCTGCCTTGTACACCATTGCTCCAAGGCCTCGTGTTGT
CGGTGCTCAAGCTCCACCCTTCCGGTCATTTGCCCCATCGCAAATCAAACATGTTTTGCAAAGACACACCCTAGCATTAG
GTGTTGGATAGTTTCATCCTGTTGGTTGCACATAGGGCAAGAGTCTTGGTGAGGTAGCCTGCGGCTTGCTAATCTGTCAG
ACGTCCAGCAAATGGCCAACCAGGCTAAGAAGCGACATCTTAGTGGTGCTTTGGGTTTTCAAGTGAATGCCGTTCTTGTG
GACACCTCTCGACCCATAAACCGGGCCGCATATGCCGAGCGGGCTGAGTATTTCCCGTGCTTTTCCCACCCACGTCCATT
TGTCGTCTCTGAGCGCATCCGAGACCAGCATGGTTTGCTTGATTCTTTCCGGTATTCGGTCGACCTTACAAGGTGGACTC
GCTTGTAAGGTTGTAAAAGCTTTCAGCCAGTACCATTG--------------------CTCTAGAGCTCTACGCCTCTTA
CCAGTCTAGTACTGGTGTGG---------------TATCATTGTATCTCTCCCTCCTAGAGCACGCTTTGGGCATCACCA
TGGAATTGCTCCGGCATTTGTGGCATGTGGATGCGTTGCTTATTAGCACGGCGACCGTGGAGGGAGCGCAAGGGGCGAAT
TTTTATTTATTTATTTGGACTGCCCCACCGGCAAAATTTTGCCGGCGACTTTGCCG---TGGCGCGTAAAGGATTC--AA
AGTTCCAAACTCAAAACCCCCGACGAATCTGCGGAGAACCCACT---GCTTGCTTGCTGCTGCCCCGGCCAGGAGTGGGC
CAGGATGGC-----CACGAGACCACCAATCAGTGCGCCCTGGCACGAGCAATTTACTTATATGCCACTGTTGCCCCCGTG
CTCTGCTCGCTTTCCCCATTCACTGCTCACTCTGCTCGCCACTCCTCTGCCCTGCTCACACTCGGTCTCACTGCAGCGGA
GCTGAGCAAT---GGCATCCAAGGCGCTGTTGCTGGCCGTGGCCGTGGCCGTGGCGGCGGGGTGCGCGGA----------
--CGCGACGGACCACATCGTGGGGGCCAACCGCGGGTGGAACCCCAACATCAACTACTCCGGCTGGTCCGCCAACCAGAC
CTTCTACGCCGGCGACCTCATCTGTATGCCCAAACAAAAACCCTCACCTCGAC-------CTCTCTTTTCTTCACCTCTG
CCTCCCCTCCA------------CTAGCTCCAGCTCCACCAGATCTACTACG--------------TCCCTGCCGCCTCC
ACCCTCACTCATTCCTGATTT-----GCAGCGTTCCGGTACCAGAAGGGGACGCACAACGTGTTCGCGGTGAACGAGACG
GGCTACGACAACTGCACCATGGCCGGGGTCACCGGCAACTGGACCTCCGGCAAGGACTTCATCCCGCTCCCGGACCCAGG
CACCTACTTCTTCATCTGCGGCAACGGCTTCTGCCAGGCCGGCATGAAGGTCGCCATCACCGTCGCCCCTGGCATCTTCG
ATCTCGGCCCACAGATCTACCCCCCGCCCGCCCCCGGCGCCGACAACCCA------------TC------CGCCTCCTTC
ACCGCAGGGGCGTGGCCGGCAGCGGCAGCGGTGGTCACCGCGCTGGGAGCTGCTGCCATCATTGCCCTTTAGGTCCTAAC
TAGGAGCATCATCTGCAGCGATTGACCCAGACATGGTCTCCAATCTAGTCTAA----TTGGGGTGCATTTAACTAGCTAG
CTTTCCTGATGTAATGTAAGCACGTCTGCATCGTCGATTTCGAGTACCAGTAGAATGTACTCATGAATGACCACGCTAGT
TGCAATTCATCAAGATAGACCCAAATCGCTGGGA-AAAAAAAGAAGCTCTGCAATTTATCCAC-------------CAAC
CAAGATGCT--GCTATGTATATTGGACAAAAGGCTACAAGAACAAACCCTATGGGAATTGTTGAATAGAATCCCTCTGTT
ATATACACCACTTCACTTACTGCTATCCGATTTTGTCTATCACCGATCAGA-CCTTTCTGAACCATGTGGCTTGGACTCG
GAGCGCTGCTGTTTCGACCGGGTCACGACCTTCTGACCATCGCTTTGCCTCGGAGCGCTACTTCGACGACGTCGGGGTCT
TTGGGGCATCAGGCTCGCTGTTCACAAAGGGGACAGGGGAGGGGCTCAGATTCTGAAAGAGTAGCTCGGGTCTTACAATG
TGGGATTTCATAATCTGTTATATGGTCTTAGTTGCTTCGACAGAGGAAAAGCTTGCTTACCTGGGCCGCATCTCTTCGTT
GGTGACTGCAGATTGCTCCGAGCTAGAAGTAGCTGCAGCCGACTTGGTAGGCATGACCGGAGATTGCTCCGAGCTAGAAG
TAGCGGCCAACTCGGTAGGCTTCTTGAGCACAACCAAGATCATCGTCATGTTGTCACAACCCTCCCCGCCACTCTCAGGC
GCCAAGCACCGGTCAAGCACTTTCTCACACACAGCAGATAGACTATCCTCCTGCGGATTTTCAAACTCCCGGTATATGAG
TACCATAACACTACACGATATCA--ATAATCTATGTTCGGCGAAACAGAGGTGCTTACAGTCTTCAACTTTTCGTGCACA
AAGTCCACTACTTGTTGACTTGACATGCAGTCCCTGTCATAAAATAAGGGAGTTA
>chr5D_481
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GCTTGTAAGGTTGTAAAAGCTTTCAGCCAGCACCATTATGAGAATATATTCTTGTGCTCTCTAGAGCTTCACGCCTCT-A
TCAGTCTACTGCTGCCTTTCCTGTAATTTCATTACTATCATTGTAACTCTCCCTCCTAGAGTGCGCTTTCGGCATCGCCA
TGGAATTGCTCCGGCATTTGTGGCATGTGTATGCGTTGCTTAGCACAGAAGGCGAC---CACGGAGCGCAAGAGGCAAAC
TTTTTTTATG---TTTGAACTGCCCCACCGGCAAACTTTTGCGGGCGACTTGCCTCGGTTGGCGCGTAGGGATTCAAAAA
AGTTTCAAACTCAAAATCTCGGACGAATCTGCAGGAGAAAAA--CTCGCTCGCTTCCTGCTGCGCCGGCCAGGAGTGGGC
CAGGATGTCATGTGCACGAGACCACCAATGAGTGCGCCCTGGCACGAGCAATTTACTTATATGCCACTGATGCCCCCGTG
CTCTGCTTGCTTTCCCCATTCACTGCTCACTCTGCTCGCCACTCTCCTCCTCTGCTCACTCTCTCTAGAGGTGA----GA
GCTGAGCAAT---GGCGTCCAGGGCGCTGTTGCTCGCCGTGGCCGGGGTGGTGGTGGCGGGGTGCGCGGTGGGGCTCTCC
GGCGCGACGGACCACATCGTGGGGGCCAACCGCGGGTGGAACCCCAACATCAACTACTCCAGCTGGTCCGCCAACCAGAC
CTTCTACGTCGGCGACCTCATCTGTATGCCCAAAGAAAAACCCTCACCCTCTCTCTCTCTCTCTCTTTTCTTCACCTCGG
CCTCCCCTCCCCTCTCCCCTCCCCTAGCTCCAGCTCCACCAGATCTACTACTA-----------CTTCCCTGCCG-----
--CCTCACTCATTCCTGATTT-----GCAGCGTTCCGGTACCAGAAGGGGACGCACAACGTGTTCGCGGTGAACGAGACC
GGCTACGACAACTGCACCATGGACGGGGTCACCGGCAACTGGACCTCCGGCAAGGACTTCATCCCGCTCCCGCACCCCGG
CACCTACTTCTTCATCTGCGGCAACGGCTTCTGCCAGGCCGGCATGAAGGTCGCCATCACCGTC------CGCATCTTCG
ATCTCGGCCCAGAGATCTACCCCCCGCCCGCCCCCGGCGCCGACAATCCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTTC
GCCGCAGGGGCGTGGCCGGCAGCGGCAGCGGCGGCCACCGCGCTGGGAGCTGCTGCCATCATTGCCCTTTAGTTC----C
TAGGAGTATCATCTGCAGCAATTGACCGAGACGTGGTCTCTAATCTAGTATAACTAGTTGGGGCGCATTTAACTAGCTAG
CTTTCCTGATGTAATGTAACCGCATCTGC-------ATTTCGAGTATCAGTAGAATGTACTCATGGATGACCACGGCAGT
TGCAATTCATCAAGATAGATCCAAAACGCTGGGA-AAAAAA--AAGCTCTGCAATTTATCCACAACCCATATCCACCAAC
CAAGATCGACAGCTATGTATATTGGACAAAAGGCTACAAGAACAAACCCTATGGGAATTGTTGAATAGAATCCCTCTGTT
ATATACACCACTTCACTTACTGCTATCTGATTTTGTCTATCACCGATTAGACCCTTTCTGAACCATGTGGCTTGGCCTTG
GAGCGCTGCTGTTTCGACCGGGTCACGACCTTCTGACCATCGCTTTGCCTCGGAGCGCTACTTCGACGACGACGGGGTCT
TTGGGGCATCAGGCTCGCTGTTCACAAAGGGGACAGGGGAGGGGCTCAGATTCTGAAAGAGTAGCTCAGGTTTTACAATG
TGGGATTTCAAAATCTGTAATATGT-----GTTGCTTCAGCAGAGGAA-T-CTTGCTTACCTGGGCCGCATCTCTTCGTC
GGTGACCGCAGATTGCTCCGAGCTAGCAGTA---GCAGCCGACTTGGTAGGCGTGACAGGAGATTGCTCTGAGCTAGAAG
TAGCAGCCGAGTCGGTAGGCTTCTTGAGCACAACCAAGATCATCGTCATGTTGTCACAACCCTCCCCACCACTCTCAGGC
GCCAAGCACCGGTCGAGCACCTTCTCACACACGGCAGATAGACTATCCTCCTGCAGATTTCCAACCCCCTGGTATATGAA
TACCATAACACTACATGATATCAATATAATCTATGTTTGACGAAACAGAGGTGCTTACAGTCTTCAACTTTTCATGCACA
AAGTCCACTACTTGTTGACTTGACATGCAGTCCCTGTCATACAATAAGGGAGTTA
>chr5A_517
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------------------------------------TG--------------------CTCTAGAGCTCTACGCCTCT-A
CCAGTCTACTACTGAC----------TTTCATTACTATCGTTGTACTAT---CTTCTAGAGTGCGCTTTGGGCATCGCCA
TGGAATTGCTCCGGCATTTGTGGCATGTGTATGCGTTGCTTAGCACAGAAGGCGGCAAGCACGGAGCGCAAGAGGCAAAC
TTTTTTTTTG---TTTGAACTGCCCCGCCGGCAAACTTTTGCTGGCGACTTGCCGTGGTTGGCGCGTAGGGATTCAAAAA
AGTTTAAAACTCAAAATCTCCGACGAATCTGCAGGAAAAAAAAACTCGCTTGCTCGCTGCTGGCCCGGCCAGGAGTGGGC
CAGG-----ATGAGGACGAGACCACCAATGAGTGCGGCCTGGCACGAGCAATTTACTTATATGCCACTGTTGCCCCCGTG
CTCTGCTTGCTTTCCCCATTCACTGCTCACTCTGCTCGCCACTCCCCTCCTCTGCTCACTCTCTCTGGAGGAGA----GA
GCTGAGCAATGGCGGCGTCCAAGGCGCTGATGCTGGCGGTGGGCGTGGTGGTGGTGGCGGGGTGCGCGGTGGGGCTGTCG
GGCGCG----------------------ACCGCGGGTGGAACCCCAACATCAACTACTCCAGCTGGTCCGCCAACCAGAC
CTTCTACGCCGGCGACCTCATCTGTATG-----------------------------------TCTTCTCTTCACCTCTG
CCTCCCCTCCCCT------------------AGCTCCACCAGATCTACTACTTGCTCTCTCTCTCTTCCCTGCCG-----
--CCTCACTCGTTCGAGTATGTACACGCAGCGCTCCGGTACCAGAAGGGGACGCACAACGTGTTCAAGGTGAAAGAGACG
GGGTACGACAACTGCACCATGGACGGGGTCACCGGCAACTGGACCTCCGGCAAGGACTTCATCCCGCTCCCGCGCCCCGG
CCGCTACTTCTTCATCTGCGGCAACGGCTTCTGCCAGTCCGGCATGAAGGTCGCCATCACCGTC------GGCATCTTCG
ATCTCGGCCCAGAGATCTACCCCCCGCCCGCCCCCGGCGCCGACAACCCA------------TCCACCTCCGCCTCTTTC
ACCGCAGGGGCGTGGCCGGCAGCGGCAGCGGTGGTCACCGCGCTGGGAGCTGCC-CCATCCTTGTCCTTTAGTTC----C
AAGGAGTATCATCTGCAGCGATTGACCGAGACATGGTCTCTAATCTAGTCTAA----TTGGGGGGCATTTAGCTAGCTAG
CTTTCCTGATGTAATGCAACCGCACCCGC-------ATTTCGAGTATCAGTAGAATGTACTCATGAATCACCACGCTAGT
TGCAATTCACCAAGATAGATCCAAATCGCTGGAAGAAAAAA--AAGCTCTGCAATTTATCCACAACCCATATCCACCAAC
CAAGATGCT--GCTATGTATATTGGACAAAAGGCTACAAAAACAAACCCTATGGGAATTGTTGAATAGAATCCCTCTGTT
ATATACACCACTTCACTTACTGCTATCTGATTTTGTCTATCACCGATCAGA-CCTTTCTGAACCATGTGGCTTGGCCTCG
GAGCGCTGCTGTTTCGACCGGGTCACGACCTTCTGACCATTGCTTCGCCTCGGAGTGCTACTTCGACGAA---GGGGTCT
CTGGGGCATCAGGCTCGCTGTTCACAAAGGGGACAGGAGAGGGGCTCAGATTCTGAAAGAGTAGCTCGGGTTTTACAATG
TTGTATTTCATAATCTGTAATATGT-----GTTGCTTCAGCAGAGGAAAT-CTTGCTTACCTGGGCCGCATCTCTTCGTT
GGTGACTGCAGATTGCTCCGAGCTAGAAGTA---GCAGACGGCTTGGTAGGCGTGACCGGAGATTGCTCCGAGCTAGAAG
TAGCGGCCGGGTCGGTAGGCTTCTTGAGCACAACCAAGATCATCGTCATGTTGTCACAACCCTCCCCACCACTCTCAGGC
GCCAAGCACCGGTCGAGCAGCTTCTCACACACGGCAGATAGACTATCCTCCTGCAGATTTTCAACCCCCTGGTGTATGAG
TACCATAACAATACACGATATCA--ATAATCTATGTTCGACGAAACAGAGGTGCTTACAGTCTTCAACTTCTCGTGCACA
AAGTCCACTACTTGTTGACTTGACATGCAGTCCCTGTCATAAAATAAGGGAGTTA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
------------------------------S-----------------------------------------------S-
--------S-----SSS-SS-------------------------S---------------SS-------------S---
-----------------------------S------------SS-SSSSS-SSSS-SS-S-S----------S---S--S
----S---SSSSS----S-----------------S------S--------SS-SS------------SS-SS-SS----
----S-----------S-S-------------S-SS--SSS-SS------------------------------------
-------S---------------------S--------------------------------------------------
-------S-------------------------------------S--S-S--------S---SS-SSSSS--SSSSS--
----------------S-------------------------------SS----S--------------S----------
------------------------------------------------------------S-------------------
----------------------------------S-------------SSSS----------------------------
----------S----------------------------------------S-----------------------SSSSS
SS------------------------------------------------------------------------------
----------------------S-------------------------------------------------S----S--
----------------------------------------------------------------SSSSSS----------
-----------S--------------------------------------------------------------------
------------------------------------------------------------------------S--SSSS-
------S--------------------S------------S----------------------S----------------
-------------------S-S-S-----SSSSSSS----------S---------------------------------
-------------------S---------------------SS-------------------------------------
--------------------------------------------------------------------------------
---------------------------S-----------------------------------------------S----
-----------------------------------------------------------------------S--------
-----------------------------------------------------------------------S--------
------------------S-----SSSSSS--------SS---------SS-----------------------------
-------------------------------SSS------------------S---------------------------
--------S-S--------------------------------------------------------S------------
--------------S-----S-----------S---------------------S---------S-S--S----------
---------------------------------------S----------------------------------------
-------------------------------------------------------
>forward_27
-------GGCTCTAGTTGCTTTCCGGT-----------------------------------------------------
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>reverse_1586
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-----------------------------------------------------------------CCCCTGGCATCTTCG
ATCTC---------------------------------------------------------------------------
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>forward_239
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-----------------------------------------------------------TGCGGCTTGCTAATCTGTCA-
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>reverse_1587
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------------------------------------------------------------------CCCTGGCATCTTCG
ATCTCG--------------------------------------------------------------------------
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>forward_334
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--------------------------------------------------------------------------CTTGTG
GACACCTCTCGACC------------------------------------------------------------------
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>reverse_1589
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--------------------------------------------------------------------CTGGCATCTTCG
ATCTCGGC------------------------------------------------------------------------
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>forward_417
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-----------------------------------------------------------------------------ATT
TGTCGTCTCTGAGCGCA---------------------------------------------------------------
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>reverse_2489
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--------AACTCGGTAGGCTTCTTGAGC---------------------------------------------------
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-------------------------------------------------------
