Multiple sequence alignment - TraesCS5B01G353200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G353200 chr5B 100.000 2798 0 0 1 2798 532875662 532878459 0.000000e+00 5168.0
1 TraesCS5B01G353200 chr5B 89.385 179 16 1 10 185 633284392 633284214 3.630000e-54 222.0
2 TraesCS5B01G353200 chr5D 91.894 2455 135 31 231 2648 438359208 438361635 0.000000e+00 3373.0
3 TraesCS5B01G353200 chr5D 79.452 657 101 18 2009 2652 438387017 438387652 4.280000e-118 435.0
4 TraesCS5B01G353200 chr5A 93.448 2030 87 22 465 2471 553420364 553422370 0.000000e+00 2970.0
5 TraesCS5B01G353200 chr5A 82.537 544 69 14 2108 2648 553423162 553423682 3.290000e-124 455.0
6 TraesCS5B01G353200 chr5A 78.831 633 92 20 2021 2649 553457915 553458509 3.380000e-104 388.0
7 TraesCS5B01G353200 chr5A 89.894 188 15 2 2 185 10831076 10831263 3.600000e-59 239.0
8 TraesCS5B01G353200 chr5A 88.649 185 18 2 4 185 490309898 490309714 3.630000e-54 222.0
9 TraesCS5B01G353200 chr5A 86.667 195 20 4 2 195 536827552 536827363 7.850000e-51 211.0
10 TraesCS5B01G353200 chr1D 95.362 733 34 0 1068 1800 472560991 472561723 0.000000e+00 1166.0
11 TraesCS5B01G353200 chr1A 92.804 806 55 2 998 1800 566564175 566564980 0.000000e+00 1164.0
12 TraesCS5B01G353200 chr1A 88.950 181 19 1 5 185 111535755 111535576 3.630000e-54 222.0
13 TraesCS5B01G353200 chr1B 94.430 754 39 2 1050 1800 657272119 657272872 0.000000e+00 1157.0
14 TraesCS5B01G353200 chr1B 89.765 723 74 0 1076 1798 542579897 542579175 0.000000e+00 926.0
15 TraesCS5B01G353200 chr1B 89.583 720 75 0 1079 1798 542432437 542431718 0.000000e+00 915.0
16 TraesCS5B01G353200 chr7D 89.031 784 71 10 1013 1796 264752817 264753585 0.000000e+00 957.0
17 TraesCS5B01G353200 chr7A 88.462 806 71 15 994 1796 288928616 288929402 0.000000e+00 953.0
18 TraesCS5B01G353200 chr6D 89.444 180 16 2 9 185 470110675 470110496 1.010000e-54 224.0
19 TraesCS5B01G353200 chr6A 89.385 179 15 2 10 185 48656244 48656067 3.630000e-54 222.0
20 TraesCS5B01G353200 chr3A 88.649 185 17 2 5 185 323103769 323103953 3.630000e-54 222.0
21 TraesCS5B01G353200 chr3A 87.766 188 19 2 2 185 16682226 16682413 1.690000e-52 217.0
22 TraesCS5B01G353200 chr2A 100.000 28 0 0 378 405 508732064 508732037 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G353200 chr5B 532875662 532878459 2797 False 5168.0 5168 100.0000 1 2798 1 chr5B.!!$F1 2797
1 TraesCS5B01G353200 chr5D 438359208 438361635 2427 False 3373.0 3373 91.8940 231 2648 1 chr5D.!!$F1 2417
2 TraesCS5B01G353200 chr5D 438387017 438387652 635 False 435.0 435 79.4520 2009 2652 1 chr5D.!!$F2 643
3 TraesCS5B01G353200 chr5A 553420364 553423682 3318 False 1712.5 2970 87.9925 465 2648 2 chr5A.!!$F3 2183
4 TraesCS5B01G353200 chr5A 553457915 553458509 594 False 388.0 388 78.8310 2021 2649 1 chr5A.!!$F2 628
5 TraesCS5B01G353200 chr1D 472560991 472561723 732 False 1166.0 1166 95.3620 1068 1800 1 chr1D.!!$F1 732
6 TraesCS5B01G353200 chr1A 566564175 566564980 805 False 1164.0 1164 92.8040 998 1800 1 chr1A.!!$F1 802
7 TraesCS5B01G353200 chr1B 657272119 657272872 753 False 1157.0 1157 94.4300 1050 1800 1 chr1B.!!$F1 750
8 TraesCS5B01G353200 chr1B 542579175 542579897 722 True 926.0 926 89.7650 1076 1798 1 chr1B.!!$R2 722
9 TraesCS5B01G353200 chr1B 542431718 542432437 719 True 915.0 915 89.5830 1079 1798 1 chr1B.!!$R1 719
10 TraesCS5B01G353200 chr7D 264752817 264753585 768 False 957.0 957 89.0310 1013 1796 1 chr7D.!!$F1 783
11 TraesCS5B01G353200 chr7A 288928616 288929402 786 False 953.0 953 88.4620 994 1796 1 chr7A.!!$F1 802

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
482 503 0.248661 CACGAGTAGATGTCGGCCAG 60.249 60.0 2.24 0.0 41.88 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1802 1842 0.17691 GCCTAGAGGTTGAGCTGACC 59.823 60.0 7.62 7.62 37.57 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.326339 GTATAAACTACAGTTTTGCTAAAGCAC 57.674 33.333 12.28 0.00 45.07 4.40
27 28 6.202516 AAACTACAGTTTTGCTAAAGCACA 57.797 33.333 3.66 0.00 45.07 4.57
28 29 6.805713 AAACTACAGTTTTGCTAAAGCACAT 58.194 32.000 3.66 0.00 45.07 3.21
29 30 6.918022 AAACTACAGTTTTGCTAAAGCACATC 59.082 34.615 3.66 0.00 45.07 3.06
30 31 7.201821 AAACTACAGTTTTGCTAAAGCACATCT 60.202 33.333 3.66 0.02 45.07 2.90
50 51 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
51 52 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
59 60 6.435430 TGCCATAAGTATTGCACAACTAAG 57.565 37.500 0.72 0.00 30.49 2.18
60 61 5.943416 TGCCATAAGTATTGCACAACTAAGT 59.057 36.000 0.72 0.00 30.49 2.24
61 62 6.093495 TGCCATAAGTATTGCACAACTAAGTC 59.907 38.462 0.72 0.00 30.49 3.01
62 63 6.458342 GCCATAAGTATTGCACAACTAAGTCC 60.458 42.308 0.72 0.00 0.00 3.85
63 64 6.823689 CCATAAGTATTGCACAACTAAGTCCT 59.176 38.462 0.72 0.00 0.00 3.85
64 65 7.985184 CCATAAGTATTGCACAACTAAGTCCTA 59.015 37.037 0.72 0.00 0.00 2.94
65 66 9.547753 CATAAGTATTGCACAACTAAGTCCTAT 57.452 33.333 0.72 0.00 0.00 2.57
66 67 7.849804 AAGTATTGCACAACTAAGTCCTATG 57.150 36.000 0.72 0.00 0.00 2.23
67 68 6.947464 AGTATTGCACAACTAAGTCCTATGT 58.053 36.000 0.00 0.00 0.00 2.29
68 69 7.042335 AGTATTGCACAACTAAGTCCTATGTC 58.958 38.462 0.00 0.00 0.00 3.06
69 70 5.483685 TTGCACAACTAAGTCCTATGTCT 57.516 39.130 0.00 0.00 0.00 3.41
70 71 5.073311 TGCACAACTAAGTCCTATGTCTC 57.927 43.478 0.00 0.00 0.00 3.36
71 72 4.772624 TGCACAACTAAGTCCTATGTCTCT 59.227 41.667 0.00 0.00 0.00 3.10
72 73 5.105752 GCACAACTAAGTCCTATGTCTCTG 58.894 45.833 0.00 0.00 0.00 3.35
73 74 5.105752 CACAACTAAGTCCTATGTCTCTGC 58.894 45.833 0.00 0.00 0.00 4.26
74 75 5.020132 ACAACTAAGTCCTATGTCTCTGCT 58.980 41.667 0.00 0.00 0.00 4.24
75 76 5.126384 ACAACTAAGTCCTATGTCTCTGCTC 59.874 44.000 0.00 0.00 0.00 4.26
76 77 5.124036 ACTAAGTCCTATGTCTCTGCTCT 57.876 43.478 0.00 0.00 0.00 4.09
77 78 5.515106 ACTAAGTCCTATGTCTCTGCTCTT 58.485 41.667 0.00 0.00 0.00 2.85
78 79 6.664714 ACTAAGTCCTATGTCTCTGCTCTTA 58.335 40.000 0.00 0.00 0.00 2.10
79 80 7.294584 ACTAAGTCCTATGTCTCTGCTCTTAT 58.705 38.462 0.00 0.00 0.00 1.73
80 81 6.403866 AAGTCCTATGTCTCTGCTCTTATG 57.596 41.667 0.00 0.00 0.00 1.90
81 82 4.280677 AGTCCTATGTCTCTGCTCTTATGC 59.719 45.833 0.00 0.00 0.00 3.14
82 83 3.576118 TCCTATGTCTCTGCTCTTATGCC 59.424 47.826 0.00 0.00 0.00 4.40
83 84 2.522836 ATGTCTCTGCTCTTATGCCG 57.477 50.000 0.00 0.00 0.00 5.69
84 85 1.474330 TGTCTCTGCTCTTATGCCGA 58.526 50.000 0.00 0.00 0.00 5.54
85 86 1.406898 TGTCTCTGCTCTTATGCCGAG 59.593 52.381 0.00 0.00 42.85 4.63
86 87 1.678627 GTCTCTGCTCTTATGCCGAGA 59.321 52.381 6.54 6.54 46.02 4.04
87 88 2.591923 TCTCTGCTCTTATGCCGAGAT 58.408 47.619 6.54 0.00 44.34 2.75
88 89 2.961741 TCTCTGCTCTTATGCCGAGATT 59.038 45.455 6.54 0.00 44.34 2.40
89 90 3.005261 TCTCTGCTCTTATGCCGAGATTC 59.995 47.826 6.54 0.00 44.34 2.52
90 91 2.057316 CTGCTCTTATGCCGAGATTCG 58.943 52.381 0.00 0.00 40.07 3.34
91 92 1.409064 TGCTCTTATGCCGAGATTCGT 59.591 47.619 0.00 0.00 38.40 3.85
92 93 1.789464 GCTCTTATGCCGAGATTCGTG 59.211 52.381 0.00 0.00 38.40 4.35
93 94 2.799917 GCTCTTATGCCGAGATTCGTGT 60.800 50.000 0.00 0.00 38.40 4.49
94 95 2.791560 CTCTTATGCCGAGATTCGTGTG 59.208 50.000 0.00 0.00 38.40 3.82
95 96 2.425668 TCTTATGCCGAGATTCGTGTGA 59.574 45.455 0.00 0.00 38.40 3.58
96 97 2.951457 TATGCCGAGATTCGTGTGAA 57.049 45.000 0.00 0.00 38.40 3.18
98 99 2.951457 TGCCGAGATTCGTGTGAATA 57.049 45.000 0.00 0.00 44.79 1.75
99 100 3.452755 TGCCGAGATTCGTGTGAATAT 57.547 42.857 0.00 0.00 44.79 1.28
100 101 3.792401 TGCCGAGATTCGTGTGAATATT 58.208 40.909 0.00 0.00 44.79 1.28
101 102 4.188462 TGCCGAGATTCGTGTGAATATTT 58.812 39.130 0.00 0.00 44.79 1.40
102 103 4.634004 TGCCGAGATTCGTGTGAATATTTT 59.366 37.500 0.00 0.00 44.79 1.82
103 104 5.198274 GCCGAGATTCGTGTGAATATTTTC 58.802 41.667 0.00 0.00 44.79 2.29
104 105 5.006746 GCCGAGATTCGTGTGAATATTTTCT 59.993 40.000 0.00 0.00 44.79 2.52
105 106 6.456988 GCCGAGATTCGTGTGAATATTTTCTT 60.457 38.462 0.00 0.00 44.79 2.52
106 107 7.464358 CCGAGATTCGTGTGAATATTTTCTTT 58.536 34.615 0.00 0.00 44.79 2.52
107 108 7.962918 CCGAGATTCGTGTGAATATTTTCTTTT 59.037 33.333 0.00 0.00 44.79 2.27
108 109 9.329913 CGAGATTCGTGTGAATATTTTCTTTTT 57.670 29.630 0.00 0.00 44.79 1.94
137 138 8.807948 TTTTCCCCTCTTTATACTTGATTCAG 57.192 34.615 0.00 0.00 0.00 3.02
138 139 7.510675 TTCCCCTCTTTATACTTGATTCAGT 57.489 36.000 0.00 0.00 0.00 3.41
139 140 7.125792 TCCCCTCTTTATACTTGATTCAGTC 57.874 40.000 0.00 0.00 0.00 3.51
140 141 6.672218 TCCCCTCTTTATACTTGATTCAGTCA 59.328 38.462 0.00 0.00 34.25 3.41
141 142 6.763610 CCCCTCTTTATACTTGATTCAGTCAC 59.236 42.308 0.00 0.00 36.32 3.67
142 143 7.365117 CCCCTCTTTATACTTGATTCAGTCACT 60.365 40.741 0.00 0.00 36.32 3.41
143 144 8.043710 CCCTCTTTATACTTGATTCAGTCACTT 58.956 37.037 0.00 0.00 36.32 3.16
151 152 6.672147 ACTTGATTCAGTCACTTAAATGTGC 58.328 36.000 0.00 0.00 36.32 4.57
152 153 6.262944 ACTTGATTCAGTCACTTAAATGTGCA 59.737 34.615 0.00 0.00 36.32 4.57
153 154 6.631971 TGATTCAGTCACTTAAATGTGCAA 57.368 33.333 0.00 0.00 37.81 4.08
154 155 7.218228 TGATTCAGTCACTTAAATGTGCAAT 57.782 32.000 0.00 0.00 37.81 3.56
155 156 8.334263 TGATTCAGTCACTTAAATGTGCAATA 57.666 30.769 0.00 0.00 37.81 1.90
156 157 8.791675 TGATTCAGTCACTTAAATGTGCAATAA 58.208 29.630 0.00 0.00 37.81 1.40
157 158 9.793252 GATTCAGTCACTTAAATGTGCAATAAT 57.207 29.630 0.00 0.00 37.81 1.28
164 165 9.920133 TCACTTAAATGTGCAATAATTAAAGCA 57.080 25.926 10.18 10.18 37.81 3.91
187 188 6.525578 ACATCTAAATGTGTCCTAGACGAA 57.474 37.500 0.00 0.00 44.51 3.85
188 189 6.931838 ACATCTAAATGTGTCCTAGACGAAA 58.068 36.000 0.00 0.00 44.51 3.46
189 190 7.383687 ACATCTAAATGTGTCCTAGACGAAAA 58.616 34.615 0.00 0.00 44.51 2.29
190 191 7.876068 ACATCTAAATGTGTCCTAGACGAAAAA 59.124 33.333 0.00 0.00 44.51 1.94
191 192 7.884816 TCTAAATGTGTCCTAGACGAAAAAG 57.115 36.000 0.00 0.00 34.95 2.27
192 193 7.439381 TCTAAATGTGTCCTAGACGAAAAAGT 58.561 34.615 0.00 0.00 34.95 2.66
193 194 8.579006 TCTAAATGTGTCCTAGACGAAAAAGTA 58.421 33.333 0.00 0.00 34.95 2.24
194 195 9.199982 CTAAATGTGTCCTAGACGAAAAAGTAA 57.800 33.333 0.00 0.00 34.95 2.24
195 196 8.617290 AAATGTGTCCTAGACGAAAAAGTAAT 57.383 30.769 0.00 0.00 34.95 1.89
196 197 9.715121 AAATGTGTCCTAGACGAAAAAGTAATA 57.285 29.630 0.00 0.00 34.95 0.98
197 198 9.715121 AATGTGTCCTAGACGAAAAAGTAATAA 57.285 29.630 0.00 0.00 34.95 1.40
198 199 9.886132 ATGTGTCCTAGACGAAAAAGTAATAAT 57.114 29.630 0.00 0.00 34.95 1.28
199 200 9.146984 TGTGTCCTAGACGAAAAAGTAATAATG 57.853 33.333 0.00 0.00 34.95 1.90
200 201 9.148104 GTGTCCTAGACGAAAAAGTAATAATGT 57.852 33.333 0.00 0.00 34.95 2.71
201 202 9.715121 TGTCCTAGACGAAAAAGTAATAATGTT 57.285 29.630 0.00 0.00 34.95 2.71
226 227 7.579589 TTTTGATATTTCGTTTCAGGCAATG 57.420 32.000 0.00 0.00 0.00 2.82
227 228 6.507958 TTGATATTTCGTTTCAGGCAATGA 57.492 33.333 0.00 0.00 35.62 2.57
228 229 6.698008 TGATATTTCGTTTCAGGCAATGAT 57.302 33.333 0.00 0.00 37.89 2.45
229 230 6.497437 TGATATTTCGTTTCAGGCAATGATG 58.503 36.000 0.00 0.00 37.89 3.07
237 238 2.874014 TCAGGCAATGATGGTGAAACA 58.126 42.857 0.00 0.00 32.46 2.83
258 259 1.276989 TCGGACTTGTCCACAATACCC 59.723 52.381 18.51 0.00 35.02 3.69
265 266 2.789213 TGTCCACAATACCCACATGTG 58.211 47.619 19.31 19.31 43.10 3.21
273 274 7.719193 TCCACAATACCCACATGTGATATTTAG 59.281 37.037 27.46 19.54 45.61 1.85
281 282 8.055181 ACCCACATGTGATATTTAGTCATCTTT 58.945 33.333 27.46 0.00 0.00 2.52
286 287 8.491152 CATGTGATATTTAGTCATCTTTCGGTC 58.509 37.037 0.00 0.00 0.00 4.79
294 295 2.352960 GTCATCTTTCGGTCATTCCAGC 59.647 50.000 0.00 0.00 35.57 4.85
312 313 3.478509 CAGCGTATCCTACTACTCTGGT 58.521 50.000 0.00 0.00 33.04 4.00
317 335 4.152045 CGTATCCTACTACTCTGGTTAGCG 59.848 50.000 0.00 0.00 0.00 4.26
326 344 0.546122 TCTGGTTAGCGATTGGCCAT 59.454 50.000 6.09 0.00 45.17 4.40
327 345 0.947244 CTGGTTAGCGATTGGCCATC 59.053 55.000 6.09 5.63 45.17 3.51
345 366 0.846015 TCCCCAGCCCAGATATGTTG 59.154 55.000 0.00 0.00 0.00 3.33
350 371 3.571401 CCCAGCCCAGATATGTTGATTTC 59.429 47.826 0.00 0.00 0.00 2.17
369 390 7.894708 TGATTTCACCATGTATTTGTGTGAAT 58.105 30.769 10.81 7.33 43.23 2.57
374 395 8.806429 TCACCATGTATTTGTGTGAATAAGAT 57.194 30.769 0.00 0.00 33.35 2.40
375 396 8.892723 TCACCATGTATTTGTGTGAATAAGATC 58.107 33.333 0.00 0.00 33.35 2.75
376 397 8.131100 CACCATGTATTTGTGTGAATAAGATCC 58.869 37.037 0.00 0.00 0.00 3.36
377 398 7.012327 ACCATGTATTTGTGTGAATAAGATCCG 59.988 37.037 0.00 0.00 0.00 4.18
378 399 7.226523 CCATGTATTTGTGTGAATAAGATCCGA 59.773 37.037 0.00 0.00 0.00 4.55
379 400 7.534085 TGTATTTGTGTGAATAAGATCCGAC 57.466 36.000 0.00 0.00 0.00 4.79
380 401 7.100409 TGTATTTGTGTGAATAAGATCCGACA 58.900 34.615 0.00 0.00 0.00 4.35
381 402 7.604545 TGTATTTGTGTGAATAAGATCCGACAA 59.395 33.333 0.00 0.00 0.00 3.18
382 403 6.480524 TTTGTGTGAATAAGATCCGACAAG 57.519 37.500 0.00 0.00 0.00 3.16
383 404 5.147330 TGTGTGAATAAGATCCGACAAGT 57.853 39.130 0.00 0.00 0.00 3.16
384 405 6.275494 TGTGTGAATAAGATCCGACAAGTA 57.725 37.500 0.00 0.00 0.00 2.24
385 406 6.873997 TGTGTGAATAAGATCCGACAAGTAT 58.126 36.000 0.00 0.00 0.00 2.12
386 407 7.327975 TGTGTGAATAAGATCCGACAAGTATT 58.672 34.615 0.00 0.00 0.00 1.89
387 408 7.822334 TGTGTGAATAAGATCCGACAAGTATTT 59.178 33.333 0.00 0.00 0.00 1.40
388 409 8.665685 GTGTGAATAAGATCCGACAAGTATTTT 58.334 33.333 0.00 0.00 0.00 1.82
389 410 8.879759 TGTGAATAAGATCCGACAAGTATTTTC 58.120 33.333 0.00 0.00 0.00 2.29
390 411 8.056571 GTGAATAAGATCCGACAAGTATTTTCG 58.943 37.037 0.00 0.00 0.00 3.46
396 417 2.598589 CGACAAGTATTTTCGGACGGA 58.401 47.619 0.00 0.00 0.00 4.69
397 418 2.597305 CGACAAGTATTTTCGGACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
398 419 3.671433 CGACAAGTATTTTCGGACGGAGA 60.671 47.826 0.00 0.00 0.00 3.71
399 420 4.240096 GACAAGTATTTTCGGACGGAGAA 58.760 43.478 0.00 0.00 0.00 2.87
400 421 4.634199 ACAAGTATTTTCGGACGGAGAAA 58.366 39.130 0.00 0.00 36.00 2.52
450 471 1.296056 GCGGTTACGATTGTGCACCT 61.296 55.000 15.69 0.70 44.60 4.00
451 472 0.719465 CGGTTACGATTGTGCACCTC 59.281 55.000 15.69 10.32 44.60 3.85
452 473 0.719465 GGTTACGATTGTGCACCTCG 59.281 55.000 27.48 27.48 38.34 4.63
453 474 1.425412 GTTACGATTGTGCACCTCGT 58.575 50.000 33.01 33.01 46.38 4.18
454 475 1.126113 GTTACGATTGTGCACCTCGTG 59.874 52.381 35.54 18.57 44.58 4.35
455 476 0.599060 TACGATTGTGCACCTCGTGA 59.401 50.000 35.54 23.74 44.58 4.35
456 477 0.667487 ACGATTGTGCACCTCGTGAG 60.667 55.000 31.43 13.95 43.40 3.51
482 503 0.248661 CACGAGTAGATGTCGGCCAG 60.249 60.000 2.24 0.00 41.88 4.85
563 588 1.455217 GCATCAGCAGCCCCAGAAT 60.455 57.895 0.00 0.00 41.58 2.40
570 595 3.650950 AGCCCCAGAATGCACCGT 61.651 61.111 0.00 0.00 31.97 4.83
594 619 0.525761 AACGGCCAAAATCATCACCG 59.474 50.000 2.24 0.00 45.86 4.94
752 777 4.515404 GGAATCCACCCGAACTCG 57.485 61.111 0.00 0.00 39.44 4.18
765 790 1.135689 CGAACTCGGCAAAAATCCCAG 60.136 52.381 0.00 0.00 35.37 4.45
771 796 0.975887 GGCAAAAATCCCAGGCTTCA 59.024 50.000 0.00 0.00 0.00 3.02
993 1026 1.849219 CGAAGCAAAGCTAGCGAGTAG 59.151 52.381 9.55 0.20 38.25 2.57
1888 1928 2.275318 GATCTCTGCTTCTTCCCGTTG 58.725 52.381 0.00 0.00 0.00 4.10
2035 2077 5.411053 GCATCTCTGTTCTTCTGCTTAACTT 59.589 40.000 0.00 0.00 0.00 2.66
2052 2094 6.261158 GCTTAACTTCTTGGTTTCTCTGAACT 59.739 38.462 0.00 0.00 0.00 3.01
2079 2121 7.604164 TCTGAATGTCAAATACAGAAGTTCTCC 59.396 37.037 1.26 0.00 42.70 3.71
2093 2135 7.119846 ACAGAAGTTCTCCGAATATTTTTCTGG 59.880 37.037 1.26 0.00 41.82 3.86
2159 2210 5.990386 AGATCATCCATTTCAAGACTGATCG 59.010 40.000 0.00 0.00 41.34 3.69
2344 2418 1.280710 AGAACGGTCATGGCAATGGTA 59.719 47.619 1.87 0.00 34.30 3.25
2368 3569 0.452184 TGCTGTTCTCGAGATCGGTC 59.548 55.000 25.80 19.84 40.29 4.79
2392 3593 5.779260 CCTCTGGATCTTCTCTTCCATCATA 59.221 44.000 0.00 0.00 41.09 2.15
2395 3596 4.594920 TGGATCTTCTCTTCCATCATACCC 59.405 45.833 0.00 0.00 37.10 3.69
2443 3644 2.046892 GACGCTGATGCCACCACT 60.047 61.111 0.00 0.00 35.36 4.00
2509 3710 2.752238 CTCCTGCTCGGGTCGTCT 60.752 66.667 0.00 0.00 0.00 4.18
2511 3712 2.125912 CCTGCTCGGGTCGTCTTG 60.126 66.667 0.00 0.00 0.00 3.02
2556 3757 1.471119 CACAGCAATGCCTCATCCTT 58.529 50.000 0.00 0.00 0.00 3.36
2559 3760 1.136305 CAGCAATGCCTCATCCTTTGG 59.864 52.381 0.00 0.00 0.00 3.28
2563 3764 2.134789 ATGCCTCATCCTTTGGACAC 57.865 50.000 0.00 0.00 32.98 3.67
2578 3779 0.177604 GACACCTCTCTGCCATGGAG 59.822 60.000 18.40 10.38 0.00 3.86
2648 3849 7.440198 TGCCTACATGAAACAATCAAATCAAA 58.560 30.769 0.00 0.00 42.54 2.69
2649 3850 8.095792 TGCCTACATGAAACAATCAAATCAAAT 58.904 29.630 0.00 0.00 42.54 2.32
2650 3851 8.598075 GCCTACATGAAACAATCAAATCAAATC 58.402 33.333 0.00 0.00 42.54 2.17
2651 3852 9.642327 CCTACATGAAACAATCAAATCAAATCA 57.358 29.630 0.00 0.00 42.54 2.57
2654 3855 8.447833 ACATGAAACAATCAAATCAAATCATGC 58.552 29.630 0.00 0.00 43.20 4.06
2655 3856 7.367159 TGAAACAATCAAATCAAATCATGCC 57.633 32.000 0.00 0.00 34.30 4.40
2656 3857 7.162761 TGAAACAATCAAATCAAATCATGCCT 58.837 30.769 0.00 0.00 34.30 4.75
2657 3858 8.312564 TGAAACAATCAAATCAAATCATGCCTA 58.687 29.630 0.00 0.00 34.30 3.93
2658 3859 8.483307 AAACAATCAAATCAAATCATGCCTAC 57.517 30.769 0.00 0.00 0.00 3.18
2659 3860 7.172868 ACAATCAAATCAAATCATGCCTACA 57.827 32.000 0.00 0.00 0.00 2.74
2660 3861 7.788026 ACAATCAAATCAAATCATGCCTACAT 58.212 30.769 0.00 0.00 36.79 2.29
2676 3877 6.623486 TGCCTACATGAAACAATCAAATCAG 58.377 36.000 0.00 0.00 42.54 2.90
2677 3878 5.517770 GCCTACATGAAACAATCAAATCAGC 59.482 40.000 0.00 0.00 42.54 4.26
2678 3879 6.038356 CCTACATGAAACAATCAAATCAGCC 58.962 40.000 0.00 0.00 42.54 4.85
2679 3880 5.471556 ACATGAAACAATCAAATCAGCCA 57.528 34.783 0.00 0.00 42.54 4.75
2680 3881 6.045072 ACATGAAACAATCAAATCAGCCAT 57.955 33.333 0.00 0.00 42.54 4.40
2681 3882 5.872617 ACATGAAACAATCAAATCAGCCATG 59.127 36.000 0.00 0.00 42.54 3.66
2682 3883 5.471556 TGAAACAATCAAATCAGCCATGT 57.528 34.783 0.00 0.00 34.30 3.21
2683 3884 5.231702 TGAAACAATCAAATCAGCCATGTG 58.768 37.500 0.00 0.00 34.30 3.21
2684 3885 5.010820 TGAAACAATCAAATCAGCCATGTGA 59.989 36.000 0.00 0.00 34.30 3.58
2685 3886 5.471556 AACAATCAAATCAGCCATGTGAA 57.528 34.783 0.00 0.00 0.00 3.18
2686 3887 5.471556 ACAATCAAATCAGCCATGTGAAA 57.528 34.783 0.00 0.00 0.00 2.69
2687 3888 5.232463 ACAATCAAATCAGCCATGTGAAAC 58.768 37.500 0.00 0.00 37.35 2.78
2704 3905 6.385537 GTGAAACAATCAAATCATGACAGC 57.614 37.500 0.00 0.00 40.50 4.40
2705 3906 6.154445 GTGAAACAATCAAATCATGACAGCT 58.846 36.000 0.00 0.00 40.50 4.24
2706 3907 6.307318 GTGAAACAATCAAATCATGACAGCTC 59.693 38.462 0.00 0.00 40.50 4.09
2707 3908 6.208007 TGAAACAATCAAATCATGACAGCTCT 59.792 34.615 0.00 0.00 41.93 4.09
2708 3909 5.814764 ACAATCAAATCATGACAGCTCTC 57.185 39.130 0.00 0.00 41.93 3.20
2709 3910 5.498393 ACAATCAAATCATGACAGCTCTCT 58.502 37.500 0.00 0.00 41.93 3.10
2710 3911 6.647229 ACAATCAAATCATGACAGCTCTCTA 58.353 36.000 0.00 0.00 41.93 2.43
2711 3912 7.281098 ACAATCAAATCATGACAGCTCTCTAT 58.719 34.615 0.00 0.00 41.93 1.98
2712 3913 7.441760 ACAATCAAATCATGACAGCTCTCTATC 59.558 37.037 0.00 0.00 41.93 2.08
2713 3914 5.851720 TCAAATCATGACAGCTCTCTATCC 58.148 41.667 0.00 0.00 31.50 2.59
2714 3915 4.517952 AATCATGACAGCTCTCTATCCG 57.482 45.455 0.00 0.00 0.00 4.18
2715 3916 2.937519 TCATGACAGCTCTCTATCCGT 58.062 47.619 0.00 0.00 0.00 4.69
2716 3917 2.881513 TCATGACAGCTCTCTATCCGTC 59.118 50.000 0.00 0.00 0.00 4.79
2717 3918 1.300481 TGACAGCTCTCTATCCGTCG 58.700 55.000 0.00 0.00 0.00 5.12
2718 3919 1.301423 GACAGCTCTCTATCCGTCGT 58.699 55.000 0.00 0.00 0.00 4.34
2719 3920 1.671845 GACAGCTCTCTATCCGTCGTT 59.328 52.381 0.00 0.00 0.00 3.85
2720 3921 1.402259 ACAGCTCTCTATCCGTCGTTG 59.598 52.381 0.00 0.00 0.00 4.10
2721 3922 1.025812 AGCTCTCTATCCGTCGTTGG 58.974 55.000 0.00 0.00 0.00 3.77
2722 3923 0.030908 GCTCTCTATCCGTCGTTGGG 59.969 60.000 0.00 0.00 0.00 4.12
2723 3924 1.676746 CTCTCTATCCGTCGTTGGGA 58.323 55.000 0.00 0.00 38.10 4.37
2724 3925 1.334243 CTCTCTATCCGTCGTTGGGAC 59.666 57.143 0.00 0.00 42.48 4.46
2725 3926 1.100510 CTCTATCCGTCGTTGGGACA 58.899 55.000 0.00 0.00 46.42 4.02
2726 3927 1.681793 CTCTATCCGTCGTTGGGACAT 59.318 52.381 0.00 0.00 46.42 3.06
2727 3928 2.882761 CTCTATCCGTCGTTGGGACATA 59.117 50.000 0.00 0.00 46.42 2.29
2728 3929 2.882761 TCTATCCGTCGTTGGGACATAG 59.117 50.000 0.00 0.00 46.42 2.23
2729 3930 1.481871 ATCCGTCGTTGGGACATAGT 58.518 50.000 0.00 0.00 46.42 2.12
2730 3931 0.528924 TCCGTCGTTGGGACATAGTG 59.471 55.000 0.00 0.00 46.42 2.74
2731 3932 1.082117 CCGTCGTTGGGACATAGTGC 61.082 60.000 0.00 0.00 46.42 4.40
2732 3933 0.108804 CGTCGTTGGGACATAGTGCT 60.109 55.000 0.00 0.00 46.42 4.40
2733 3934 1.671850 CGTCGTTGGGACATAGTGCTT 60.672 52.381 0.00 0.00 46.42 3.91
2734 3935 2.416296 CGTCGTTGGGACATAGTGCTTA 60.416 50.000 0.00 0.00 46.42 3.09
2735 3936 2.928116 GTCGTTGGGACATAGTGCTTAC 59.072 50.000 0.00 0.00 45.36 2.34
2736 3937 2.563620 TCGTTGGGACATAGTGCTTACA 59.436 45.455 0.00 0.00 39.30 2.41
2737 3938 3.196901 TCGTTGGGACATAGTGCTTACAT 59.803 43.478 0.00 0.00 39.30 2.29
2738 3939 4.403113 TCGTTGGGACATAGTGCTTACATA 59.597 41.667 0.00 0.00 39.30 2.29
2739 3940 4.745125 CGTTGGGACATAGTGCTTACATAG 59.255 45.833 0.00 0.00 39.30 2.23
2740 3941 5.451381 CGTTGGGACATAGTGCTTACATAGA 60.451 44.000 0.00 0.00 39.30 1.98
2741 3942 5.531122 TGGGACATAGTGCTTACATAGAC 57.469 43.478 0.00 0.00 0.00 2.59
2742 3943 5.208890 TGGGACATAGTGCTTACATAGACT 58.791 41.667 0.00 0.00 0.00 3.24
2743 3944 6.370453 TGGGACATAGTGCTTACATAGACTA 58.630 40.000 0.00 0.00 0.00 2.59
2744 3945 7.010771 TGGGACATAGTGCTTACATAGACTAT 58.989 38.462 0.00 0.00 32.33 2.12
2745 3946 7.176865 TGGGACATAGTGCTTACATAGACTATC 59.823 40.741 0.00 0.00 31.01 2.08
2746 3947 7.176865 GGGACATAGTGCTTACATAGACTATCA 59.823 40.741 0.00 0.00 31.01 2.15
2747 3948 8.240682 GGACATAGTGCTTACATAGACTATCAG 58.759 40.741 0.00 0.00 31.01 2.90
2748 3949 8.116651 ACATAGTGCTTACATAGACTATCAGG 57.883 38.462 0.00 0.00 31.01 3.86
2749 3950 5.461032 AGTGCTTACATAGACTATCAGGC 57.539 43.478 0.00 0.00 0.00 4.85
2750 3951 5.144100 AGTGCTTACATAGACTATCAGGCT 58.856 41.667 8.38 0.00 37.37 4.58
2751 3952 6.307776 AGTGCTTACATAGACTATCAGGCTA 58.692 40.000 8.38 0.00 40.74 3.93
2752 3953 6.432783 AGTGCTTACATAGACTATCAGGCTAG 59.567 42.308 8.38 0.00 39.62 3.42
2753 3954 5.712446 TGCTTACATAGACTATCAGGCTAGG 59.288 44.000 0.00 0.00 42.96 3.02
2754 3955 5.946972 GCTTACATAGACTATCAGGCTAGGA 59.053 44.000 7.66 0.00 39.88 2.94
2755 3956 6.434652 GCTTACATAGACTATCAGGCTAGGAA 59.565 42.308 7.66 0.00 39.88 3.36
2756 3957 7.039644 GCTTACATAGACTATCAGGCTAGGAAA 60.040 40.741 7.66 0.00 39.88 3.13
2757 3958 6.658188 ACATAGACTATCAGGCTAGGAAAC 57.342 41.667 7.66 0.00 39.88 2.78
2758 3959 6.377912 ACATAGACTATCAGGCTAGGAAACT 58.622 40.000 7.66 0.00 39.88 2.66
2759 3960 6.492087 ACATAGACTATCAGGCTAGGAAACTC 59.508 42.308 7.66 0.00 39.88 3.01
2760 3961 4.219919 AGACTATCAGGCTAGGAAACTCC 58.780 47.826 0.00 0.00 43.67 3.85
2761 3962 3.961408 GACTATCAGGCTAGGAAACTCCA 59.039 47.826 0.00 0.00 43.67 3.86
2762 3963 4.561752 ACTATCAGGCTAGGAAACTCCAT 58.438 43.478 0.00 0.00 43.67 3.41
2763 3964 3.853355 ATCAGGCTAGGAAACTCCATG 57.147 47.619 0.00 0.00 43.67 3.66
2764 3965 2.832838 TCAGGCTAGGAAACTCCATGA 58.167 47.619 0.00 0.00 43.67 3.07
2765 3966 3.387962 TCAGGCTAGGAAACTCCATGAT 58.612 45.455 0.00 0.00 43.67 2.45
2766 3967 3.135348 TCAGGCTAGGAAACTCCATGATG 59.865 47.826 0.00 0.00 43.67 3.07
2767 3968 2.441001 AGGCTAGGAAACTCCATGATGG 59.559 50.000 4.74 4.74 43.67 3.51
2768 3969 2.225467 GCTAGGAAACTCCATGATGGC 58.775 52.381 6.59 0.00 43.67 4.40
2769 3970 2.421952 GCTAGGAAACTCCATGATGGCA 60.422 50.000 6.59 0.00 43.67 4.92
2770 3971 3.749954 GCTAGGAAACTCCATGATGGCAT 60.750 47.826 6.59 0.00 43.67 4.40
2771 3972 4.505566 GCTAGGAAACTCCATGATGGCATA 60.506 45.833 6.59 0.00 43.67 3.14
2772 3973 4.096190 AGGAAACTCCATGATGGCATAG 57.904 45.455 6.59 1.54 39.61 2.23
2773 3974 3.152341 GGAAACTCCATGATGGCATAGG 58.848 50.000 6.59 3.15 37.47 2.57
2774 3975 3.435601 GGAAACTCCATGATGGCATAGGT 60.436 47.826 6.59 0.00 37.47 3.08
2775 3976 3.959495 AACTCCATGATGGCATAGGTT 57.041 42.857 6.59 4.04 37.47 3.50
2776 3977 3.219176 ACTCCATGATGGCATAGGTTG 57.781 47.619 6.59 4.09 37.47 3.77
2777 3978 2.511218 ACTCCATGATGGCATAGGTTGT 59.489 45.455 6.59 4.66 37.47 3.32
2778 3979 2.882761 CTCCATGATGGCATAGGTTGTG 59.117 50.000 6.59 0.00 37.47 3.33
2779 3980 1.338973 CCATGATGGCATAGGTTGTGC 59.661 52.381 0.00 0.00 41.78 4.57
2780 3981 2.304092 CATGATGGCATAGGTTGTGCT 58.696 47.619 0.00 0.00 42.16 4.40
2781 3982 2.512692 TGATGGCATAGGTTGTGCTT 57.487 45.000 0.00 0.00 42.16 3.91
2782 3983 3.643199 TGATGGCATAGGTTGTGCTTA 57.357 42.857 0.00 0.00 42.16 3.09
2783 3984 4.169059 TGATGGCATAGGTTGTGCTTAT 57.831 40.909 0.00 0.00 42.16 1.73
2784 3985 4.136796 TGATGGCATAGGTTGTGCTTATC 58.863 43.478 0.00 4.17 42.16 1.75
2785 3986 2.930950 TGGCATAGGTTGTGCTTATCC 58.069 47.619 0.00 0.00 42.16 2.59
2786 3987 2.509548 TGGCATAGGTTGTGCTTATCCT 59.490 45.455 0.00 0.00 42.16 3.24
2787 3988 3.714280 TGGCATAGGTTGTGCTTATCCTA 59.286 43.478 0.00 0.00 42.16 2.94
2788 3989 4.165180 TGGCATAGGTTGTGCTTATCCTAA 59.835 41.667 0.00 0.00 42.16 2.69
2789 3990 5.163099 TGGCATAGGTTGTGCTTATCCTAAT 60.163 40.000 0.00 0.00 42.16 1.73
2790 3991 5.182001 GGCATAGGTTGTGCTTATCCTAATG 59.818 44.000 0.00 0.00 42.16 1.90
2791 3992 5.335191 GCATAGGTTGTGCTTATCCTAATGC 60.335 44.000 0.00 0.00 39.45 3.56
2792 3993 3.555966 AGGTTGTGCTTATCCTAATGCC 58.444 45.455 0.00 0.00 0.00 4.40
2793 3994 2.290641 GGTTGTGCTTATCCTAATGCCG 59.709 50.000 0.00 0.00 0.00 5.69
2794 3995 1.593196 TGTGCTTATCCTAATGCCGC 58.407 50.000 0.00 0.00 0.00 6.53
2795 3996 1.140852 TGTGCTTATCCTAATGCCGCT 59.859 47.619 0.00 0.00 0.00 5.52
2796 3997 1.801178 GTGCTTATCCTAATGCCGCTC 59.199 52.381 0.00 0.00 0.00 5.03
2797 3998 1.416030 TGCTTATCCTAATGCCGCTCA 59.584 47.619 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 5.943416 ACTTAGTTGTGCAATACTTATGGCA 59.057 36.000 7.22 0.00 40.19 4.92
37 38 6.436843 ACTTAGTTGTGCAATACTTATGGC 57.563 37.500 7.22 0.00 33.16 4.40
38 39 6.823689 AGGACTTAGTTGTGCAATACTTATGG 59.176 38.462 7.22 0.38 0.00 2.74
39 40 7.849804 AGGACTTAGTTGTGCAATACTTATG 57.150 36.000 7.22 2.32 0.00 1.90
40 41 9.547753 CATAGGACTTAGTTGTGCAATACTTAT 57.452 33.333 7.22 0.00 0.00 1.73
41 42 8.537016 ACATAGGACTTAGTTGTGCAATACTTA 58.463 33.333 7.22 0.00 0.00 2.24
42 43 7.394816 ACATAGGACTTAGTTGTGCAATACTT 58.605 34.615 7.22 0.00 0.00 2.24
43 44 6.947464 ACATAGGACTTAGTTGTGCAATACT 58.053 36.000 7.11 7.11 0.00 2.12
44 45 7.042335 AGACATAGGACTTAGTTGTGCAATAC 58.958 38.462 0.00 0.00 0.00 1.89
45 46 7.124298 AGAGACATAGGACTTAGTTGTGCAATA 59.876 37.037 0.00 0.00 0.00 1.90
46 47 6.054860 AGACATAGGACTTAGTTGTGCAAT 57.945 37.500 0.00 0.00 0.00 3.56
47 48 5.246203 AGAGACATAGGACTTAGTTGTGCAA 59.754 40.000 0.00 0.00 0.00 4.08
48 49 4.772624 AGAGACATAGGACTTAGTTGTGCA 59.227 41.667 0.00 0.00 0.00 4.57
49 50 5.105752 CAGAGACATAGGACTTAGTTGTGC 58.894 45.833 0.00 0.00 0.00 4.57
50 51 5.105554 AGCAGAGACATAGGACTTAGTTGTG 60.106 44.000 0.00 0.00 0.00 3.33
51 52 5.020132 AGCAGAGACATAGGACTTAGTTGT 58.980 41.667 0.00 0.00 0.00 3.32
52 53 5.359576 AGAGCAGAGACATAGGACTTAGTTG 59.640 44.000 0.00 0.00 0.00 3.16
53 54 5.515106 AGAGCAGAGACATAGGACTTAGTT 58.485 41.667 0.00 0.00 0.00 2.24
54 55 5.124036 AGAGCAGAGACATAGGACTTAGT 57.876 43.478 0.00 0.00 0.00 2.24
55 56 7.592938 CATAAGAGCAGAGACATAGGACTTAG 58.407 42.308 0.00 0.00 0.00 2.18
56 57 6.015856 GCATAAGAGCAGAGACATAGGACTTA 60.016 42.308 0.00 0.00 0.00 2.24
57 58 5.221422 GCATAAGAGCAGAGACATAGGACTT 60.221 44.000 0.00 0.00 0.00 3.01
58 59 4.280677 GCATAAGAGCAGAGACATAGGACT 59.719 45.833 0.00 0.00 0.00 3.85
59 60 4.555262 GCATAAGAGCAGAGACATAGGAC 58.445 47.826 0.00 0.00 0.00 3.85
60 61 3.576118 GGCATAAGAGCAGAGACATAGGA 59.424 47.826 0.00 0.00 35.83 2.94
61 62 3.613671 CGGCATAAGAGCAGAGACATAGG 60.614 52.174 0.00 0.00 35.83 2.57
62 63 3.254411 TCGGCATAAGAGCAGAGACATAG 59.746 47.826 0.00 0.00 33.83 2.23
63 64 3.222603 TCGGCATAAGAGCAGAGACATA 58.777 45.455 0.00 0.00 33.83 2.29
64 65 2.034878 TCGGCATAAGAGCAGAGACAT 58.965 47.619 0.00 0.00 33.83 3.06
65 66 1.474330 TCGGCATAAGAGCAGAGACA 58.526 50.000 0.00 0.00 33.83 3.41
69 70 2.287849 CGAATCTCGGCATAAGAGCAGA 60.288 50.000 0.00 0.00 36.00 4.26
70 71 2.057316 CGAATCTCGGCATAAGAGCAG 58.943 52.381 0.00 0.00 36.00 4.24
71 72 1.409064 ACGAATCTCGGCATAAGAGCA 59.591 47.619 0.67 0.00 45.59 4.26
72 73 1.789464 CACGAATCTCGGCATAAGAGC 59.211 52.381 0.67 0.00 45.59 4.09
73 74 2.791560 CACACGAATCTCGGCATAAGAG 59.208 50.000 0.67 0.00 45.59 2.85
74 75 2.425668 TCACACGAATCTCGGCATAAGA 59.574 45.455 0.67 0.00 45.59 2.10
75 76 2.809446 TCACACGAATCTCGGCATAAG 58.191 47.619 0.67 0.00 45.59 1.73
76 77 2.951457 TCACACGAATCTCGGCATAA 57.049 45.000 0.67 0.00 45.59 1.90
77 78 2.951457 TTCACACGAATCTCGGCATA 57.049 45.000 0.67 0.00 45.59 3.14
78 79 2.315925 ATTCACACGAATCTCGGCAT 57.684 45.000 0.67 0.00 45.59 4.40
79 80 2.951457 TATTCACACGAATCTCGGCA 57.049 45.000 0.67 0.00 45.59 5.69
80 81 4.795970 AAATATTCACACGAATCTCGGC 57.204 40.909 0.67 0.00 45.59 5.54
81 82 6.589830 AGAAAATATTCACACGAATCTCGG 57.410 37.500 0.67 0.00 41.09 4.63
82 83 8.880768 AAAAGAAAATATTCACACGAATCTCG 57.119 30.769 0.00 0.00 41.09 4.04
111 112 9.243105 CTGAATCAAGTATAAAGAGGGGAAAAA 57.757 33.333 0.00 0.00 0.00 1.94
112 113 8.390921 ACTGAATCAAGTATAAAGAGGGGAAAA 58.609 33.333 0.00 0.00 0.00 2.29
113 114 7.928873 ACTGAATCAAGTATAAAGAGGGGAAA 58.071 34.615 0.00 0.00 0.00 3.13
114 115 7.182026 TGACTGAATCAAGTATAAAGAGGGGAA 59.818 37.037 0.00 0.00 33.02 3.97
115 116 6.672218 TGACTGAATCAAGTATAAAGAGGGGA 59.328 38.462 0.00 0.00 33.02 4.81
116 117 6.763610 GTGACTGAATCAAGTATAAAGAGGGG 59.236 42.308 0.00 0.00 39.72 4.79
117 118 7.560368 AGTGACTGAATCAAGTATAAAGAGGG 58.440 38.462 0.00 0.00 39.72 4.30
125 126 8.454106 GCACATTTAAGTGACTGAATCAAGTAT 58.546 33.333 4.81 0.00 42.05 2.12
126 127 7.443879 TGCACATTTAAGTGACTGAATCAAGTA 59.556 33.333 4.81 0.00 42.05 2.24
127 128 6.262944 TGCACATTTAAGTGACTGAATCAAGT 59.737 34.615 4.81 0.00 42.05 3.16
128 129 6.671190 TGCACATTTAAGTGACTGAATCAAG 58.329 36.000 4.81 0.00 42.05 3.02
129 130 6.631971 TGCACATTTAAGTGACTGAATCAA 57.368 33.333 4.81 0.00 42.05 2.57
130 131 6.631971 TTGCACATTTAAGTGACTGAATCA 57.368 33.333 4.81 0.00 42.05 2.57
131 132 9.793252 ATTATTGCACATTTAAGTGACTGAATC 57.207 29.630 4.81 0.00 42.05 2.52
138 139 9.920133 TGCTTTAATTATTGCACATTTAAGTGA 57.080 25.926 4.81 0.00 42.05 3.41
165 166 7.827819 TTTTCGTCTAGGACACATTTAGATG 57.172 36.000 0.00 0.00 39.25 2.90
166 167 8.095169 ACTTTTTCGTCTAGGACACATTTAGAT 58.905 33.333 0.00 0.00 32.09 1.98
167 168 7.439381 ACTTTTTCGTCTAGGACACATTTAGA 58.561 34.615 0.00 0.00 32.09 2.10
168 169 7.653767 ACTTTTTCGTCTAGGACACATTTAG 57.346 36.000 0.00 0.00 32.09 1.85
169 170 9.715121 ATTACTTTTTCGTCTAGGACACATTTA 57.285 29.630 0.00 0.00 32.09 1.40
170 171 8.617290 ATTACTTTTTCGTCTAGGACACATTT 57.383 30.769 0.00 0.00 32.09 2.32
171 172 9.715121 TTATTACTTTTTCGTCTAGGACACATT 57.285 29.630 0.00 0.00 32.09 2.71
172 173 9.886132 ATTATTACTTTTTCGTCTAGGACACAT 57.114 29.630 0.00 0.00 32.09 3.21
173 174 9.146984 CATTATTACTTTTTCGTCTAGGACACA 57.853 33.333 0.00 0.00 32.09 3.72
174 175 9.148104 ACATTATTACTTTTTCGTCTAGGACAC 57.852 33.333 0.00 0.00 32.09 3.67
175 176 9.715121 AACATTATTACTTTTTCGTCTAGGACA 57.285 29.630 0.00 0.00 32.09 4.02
201 202 7.869937 TCATTGCCTGAAACGAAATATCAAAAA 59.130 29.630 0.00 0.00 0.00 1.94
202 203 7.374272 TCATTGCCTGAAACGAAATATCAAAA 58.626 30.769 0.00 0.00 0.00 2.44
203 204 6.918626 TCATTGCCTGAAACGAAATATCAAA 58.081 32.000 0.00 0.00 0.00 2.69
204 205 6.507958 TCATTGCCTGAAACGAAATATCAA 57.492 33.333 0.00 0.00 0.00 2.57
205 206 6.459985 CCATCATTGCCTGAAACGAAATATCA 60.460 38.462 0.00 0.00 37.44 2.15
206 207 5.916883 CCATCATTGCCTGAAACGAAATATC 59.083 40.000 0.00 0.00 37.44 1.63
207 208 5.360714 ACCATCATTGCCTGAAACGAAATAT 59.639 36.000 0.00 0.00 37.44 1.28
208 209 4.704540 ACCATCATTGCCTGAAACGAAATA 59.295 37.500 0.00 0.00 37.44 1.40
209 210 3.511146 ACCATCATTGCCTGAAACGAAAT 59.489 39.130 0.00 0.00 37.44 2.17
210 211 2.890311 ACCATCATTGCCTGAAACGAAA 59.110 40.909 0.00 0.00 37.44 3.46
211 212 2.228582 CACCATCATTGCCTGAAACGAA 59.771 45.455 0.00 0.00 37.44 3.85
212 213 1.811965 CACCATCATTGCCTGAAACGA 59.188 47.619 0.00 0.00 37.44 3.85
213 214 1.811965 TCACCATCATTGCCTGAAACG 59.188 47.619 0.00 0.00 37.44 3.60
214 215 3.940209 TTCACCATCATTGCCTGAAAC 57.060 42.857 0.00 0.00 37.44 2.78
215 216 3.640498 TGTTTCACCATCATTGCCTGAAA 59.360 39.130 0.00 0.00 37.44 2.69
216 217 3.229293 TGTTTCACCATCATTGCCTGAA 58.771 40.909 0.00 0.00 37.44 3.02
217 218 2.874014 TGTTTCACCATCATTGCCTGA 58.126 42.857 0.00 0.00 38.53 3.86
218 219 3.732774 CGATGTTTCACCATCATTGCCTG 60.733 47.826 0.00 0.00 41.06 4.85
219 220 2.424601 CGATGTTTCACCATCATTGCCT 59.575 45.455 0.00 0.00 41.06 4.75
220 221 2.480073 CCGATGTTTCACCATCATTGCC 60.480 50.000 0.00 0.00 41.06 4.52
221 222 2.423185 TCCGATGTTTCACCATCATTGC 59.577 45.455 0.00 0.00 41.06 3.56
222 223 3.691118 AGTCCGATGTTTCACCATCATTG 59.309 43.478 0.00 0.00 41.06 2.82
223 224 3.955471 AGTCCGATGTTTCACCATCATT 58.045 40.909 0.00 0.00 41.06 2.57
224 225 3.634397 AGTCCGATGTTTCACCATCAT 57.366 42.857 0.00 0.00 41.06 2.45
225 226 3.073678 CAAGTCCGATGTTTCACCATCA 58.926 45.455 0.00 0.00 41.06 3.07
226 227 3.074412 ACAAGTCCGATGTTTCACCATC 58.926 45.455 0.00 0.00 38.28 3.51
227 228 3.074412 GACAAGTCCGATGTTTCACCAT 58.926 45.455 0.00 0.00 0.00 3.55
228 229 2.489971 GACAAGTCCGATGTTTCACCA 58.510 47.619 0.00 0.00 0.00 4.17
229 230 1.804748 GGACAAGTCCGATGTTTCACC 59.195 52.381 3.08 0.00 40.36 4.02
258 259 8.278408 CCGAAAGATGACTAAATATCACATGTG 58.722 37.037 20.18 20.18 0.00 3.21
265 266 8.713271 GGAATGACCGAAAGATGACTAAATATC 58.287 37.037 0.00 0.00 0.00 1.63
273 274 2.352960 GCTGGAATGACCGAAAGATGAC 59.647 50.000 0.00 0.00 42.61 3.06
281 282 0.387929 GGATACGCTGGAATGACCGA 59.612 55.000 0.00 0.00 42.61 4.69
312 313 1.150536 GGGGATGGCCAATCGCTAA 59.849 57.895 10.96 0.00 45.34 3.09
317 335 2.522680 GGCTGGGGATGGCCAATC 60.523 66.667 10.96 8.15 35.15 2.67
326 344 0.846015 CAACATATCTGGGCTGGGGA 59.154 55.000 0.00 0.00 0.00 4.81
327 345 0.846015 TCAACATATCTGGGCTGGGG 59.154 55.000 0.00 0.00 0.00 4.96
350 371 8.131100 GGATCTTATTCACACAAATACATGGTG 58.869 37.037 0.00 0.00 38.47 4.17
376 397 2.597305 CTCCGTCCGAAAATACTTGTCG 59.403 50.000 0.00 0.00 34.58 4.35
377 398 3.841643 TCTCCGTCCGAAAATACTTGTC 58.158 45.455 0.00 0.00 0.00 3.18
378 399 3.947910 TCTCCGTCCGAAAATACTTGT 57.052 42.857 0.00 0.00 0.00 3.16
379 400 5.600908 TTTTCTCCGTCCGAAAATACTTG 57.399 39.130 0.00 0.00 35.95 3.16
384 405 9.257651 CTTATAGTATTTTCTCCGTCCGAAAAT 57.742 33.333 15.87 15.87 46.76 1.82
385 406 8.469200 TCTTATAGTATTTTCTCCGTCCGAAAA 58.531 33.333 0.00 0.00 42.49 2.29
386 407 7.999679 TCTTATAGTATTTTCTCCGTCCGAAA 58.000 34.615 0.00 0.00 0.00 3.46
387 408 7.572523 TCTTATAGTATTTTCTCCGTCCGAA 57.427 36.000 0.00 0.00 0.00 4.30
388 409 7.591165 CATCTTATAGTATTTTCTCCGTCCGA 58.409 38.462 0.00 0.00 0.00 4.55
389 410 6.308282 GCATCTTATAGTATTTTCTCCGTCCG 59.692 42.308 0.00 0.00 0.00 4.79
390 411 7.152645 TGCATCTTATAGTATTTTCTCCGTCC 58.847 38.462 0.00 0.00 0.00 4.79
391 412 8.589335 TTGCATCTTATAGTATTTTCTCCGTC 57.411 34.615 0.00 0.00 0.00 4.79
392 413 8.421784 TCTTGCATCTTATAGTATTTTCTCCGT 58.578 33.333 0.00 0.00 0.00 4.69
393 414 8.818141 TCTTGCATCTTATAGTATTTTCTCCG 57.182 34.615 0.00 0.00 0.00 4.63
406 427 9.909644 GCAATAATCTGATTTCTTGCATCTTAT 57.090 29.630 27.58 6.72 38.49 1.73
425 446 3.375610 TGCACAATCGTAACCGCAATAAT 59.624 39.130 0.00 0.00 0.00 1.28
451 472 0.509929 TACTCGTGTCACGACTCACG 59.490 55.000 23.70 15.75 46.73 4.35
452 473 1.797046 TCTACTCGTGTCACGACTCAC 59.203 52.381 23.70 0.00 46.73 3.51
453 474 2.159327 TCTACTCGTGTCACGACTCA 57.841 50.000 23.70 10.66 46.73 3.41
454 475 2.415857 ACATCTACTCGTGTCACGACTC 59.584 50.000 23.70 0.00 46.73 3.36
455 476 2.415857 GACATCTACTCGTGTCACGACT 59.584 50.000 23.70 16.92 46.73 4.18
456 477 2.771689 GACATCTACTCGTGTCACGAC 58.228 52.381 23.70 8.17 46.73 4.34
509 530 2.597805 ACCCCGGGAGATCGATCG 60.598 66.667 26.32 9.36 0.00 3.69
510 531 2.276853 GGACCCCGGGAGATCGATC 61.277 68.421 26.32 17.91 0.00 3.69
557 582 4.465512 GCGCACGGTGCATTCTGG 62.466 66.667 30.23 15.24 45.36 3.86
570 595 2.049618 GATTTTGGCCGTTGCGCA 60.050 55.556 5.66 5.66 38.85 6.09
615 640 2.415010 CGATCTCCTGCTCACCGG 59.585 66.667 0.00 0.00 0.00 5.28
619 644 3.214253 CAGGCGATCTCCTGCTCA 58.786 61.111 18.47 0.00 46.11 4.26
750 775 0.541764 AAGCCTGGGATTTTTGCCGA 60.542 50.000 0.00 0.00 0.00 5.54
752 777 0.975887 TGAAGCCTGGGATTTTTGCC 59.024 50.000 0.00 0.00 0.00 4.52
887 912 0.306840 GCGGCGTTTAAATAGGAGGC 59.693 55.000 9.37 0.00 0.00 4.70
1802 1842 0.176910 GCCTAGAGGTTGAGCTGACC 59.823 60.000 7.62 7.62 37.57 4.02
1888 1928 3.018149 AGTCCGGACTACTCAATCTCAC 58.982 50.000 35.59 3.39 40.43 3.51
2035 2077 5.614324 TCAGAAGTTCAGAGAAACCAAGA 57.386 39.130 5.50 0.00 0.00 3.02
2052 2094 8.908786 AGAACTTCTGTATTTGACATTCAGAA 57.091 30.769 0.00 0.00 41.00 3.02
2093 2135 5.938125 TGAATACTTTAGCTGGTTGGACTTC 59.062 40.000 0.00 0.00 0.00 3.01
2129 2171 6.039493 AGTCTTGAAATGGATGATCTGAATGC 59.961 38.462 0.00 0.00 0.00 3.56
2136 2179 5.987953 TCGATCAGTCTTGAAATGGATGATC 59.012 40.000 0.00 0.00 38.65 2.92
2138 2181 5.105187 AGTCGATCAGTCTTGAAATGGATGA 60.105 40.000 0.00 0.00 36.78 2.92
2159 2210 9.774742 GAATTGTATTTACAGGATTGTTGAGTC 57.225 33.333 0.00 0.00 38.76 3.36
2197 2249 8.275040 ACCCTAGATTTGCAGAGTATTTGTTAT 58.725 33.333 0.00 0.00 0.00 1.89
2239 2293 8.577296 GTCCTAGCTTTCCATTTTACTTCTTTT 58.423 33.333 0.00 0.00 0.00 2.27
2240 2294 7.945109 AGTCCTAGCTTTCCATTTTACTTCTTT 59.055 33.333 0.00 0.00 0.00 2.52
2241 2295 7.462590 AGTCCTAGCTTTCCATTTTACTTCTT 58.537 34.615 0.00 0.00 0.00 2.52
2242 2296 7.021998 AGTCCTAGCTTTCCATTTTACTTCT 57.978 36.000 0.00 0.00 0.00 2.85
2243 2297 8.041919 ACTAGTCCTAGCTTTCCATTTTACTTC 58.958 37.037 0.00 0.00 36.66 3.01
2344 2418 2.223688 CGATCTCGAGAACAGCAGGAAT 60.224 50.000 20.91 0.00 43.02 3.01
2443 3644 2.819595 GAGAATGGAAGCGCGCCA 60.820 61.111 30.33 23.84 40.24 5.69
2509 3710 4.329545 GGGCTCCTGTGCGTCCAA 62.330 66.667 0.00 0.00 0.00 3.53
2556 3757 0.325933 CATGGCAGAGAGGTGTCCAA 59.674 55.000 0.00 0.00 30.62 3.53
2559 3760 0.177604 CTCCATGGCAGAGAGGTGTC 59.822 60.000 6.96 0.00 32.86 3.67
2563 3764 0.767446 ATCCCTCCATGGCAGAGAGG 60.767 60.000 22.61 22.61 45.72 3.69
2578 3779 2.440980 GGCAAGCTGGTGGATCCC 60.441 66.667 9.90 0.00 34.77 3.85
2651 3852 7.172868 TGATTTGATTGTTTCATGTAGGCAT 57.827 32.000 0.00 0.00 33.34 4.40
2652 3853 6.587206 TGATTTGATTGTTTCATGTAGGCA 57.413 33.333 0.00 0.00 33.34 4.75
2653 3854 5.517770 GCTGATTTGATTGTTTCATGTAGGC 59.482 40.000 0.00 0.00 33.34 3.93
2654 3855 6.038356 GGCTGATTTGATTGTTTCATGTAGG 58.962 40.000 0.00 0.00 33.34 3.18
2655 3856 6.623486 TGGCTGATTTGATTGTTTCATGTAG 58.377 36.000 0.00 0.00 33.34 2.74
2656 3857 6.587206 TGGCTGATTTGATTGTTTCATGTA 57.413 33.333 0.00 0.00 33.34 2.29
2657 3858 5.471556 TGGCTGATTTGATTGTTTCATGT 57.528 34.783 0.00 0.00 33.34 3.21
2658 3859 5.872617 ACATGGCTGATTTGATTGTTTCATG 59.127 36.000 0.00 0.00 33.34 3.07
2659 3860 5.872617 CACATGGCTGATTTGATTGTTTCAT 59.127 36.000 0.00 0.00 33.34 2.57
2660 3861 5.010820 TCACATGGCTGATTTGATTGTTTCA 59.989 36.000 0.00 0.00 0.00 2.69
2661 3862 5.472148 TCACATGGCTGATTTGATTGTTTC 58.528 37.500 0.00 0.00 0.00 2.78
2662 3863 5.471556 TCACATGGCTGATTTGATTGTTT 57.528 34.783 0.00 0.00 0.00 2.83
2665 3866 5.231702 TGTTTCACATGGCTGATTTGATTG 58.768 37.500 0.00 0.00 0.00 2.67
2671 3872 5.471556 TTGATTGTTTCACATGGCTGATT 57.528 34.783 0.00 0.00 32.84 2.57
2676 3877 5.870433 TCATGATTTGATTGTTTCACATGGC 59.130 36.000 0.00 0.00 37.15 4.40
2677 3878 6.869388 TGTCATGATTTGATTGTTTCACATGG 59.131 34.615 0.00 0.00 37.15 3.66
2678 3879 7.411480 GCTGTCATGATTTGATTGTTTCACATG 60.411 37.037 0.00 0.00 37.55 3.21
2679 3880 6.588756 GCTGTCATGATTTGATTGTTTCACAT 59.411 34.615 0.00 0.00 36.54 3.21
2680 3881 5.921976 GCTGTCATGATTTGATTGTTTCACA 59.078 36.000 0.00 0.00 36.54 3.58
2681 3882 6.154445 AGCTGTCATGATTTGATTGTTTCAC 58.846 36.000 0.00 0.00 36.54 3.18
2682 3883 6.208007 AGAGCTGTCATGATTTGATTGTTTCA 59.792 34.615 0.00 0.00 36.54 2.69
2683 3884 6.618811 AGAGCTGTCATGATTTGATTGTTTC 58.381 36.000 0.00 0.00 36.54 2.78
2684 3885 6.433404 AGAGAGCTGTCATGATTTGATTGTTT 59.567 34.615 14.08 0.00 36.54 2.83
2685 3886 5.944599 AGAGAGCTGTCATGATTTGATTGTT 59.055 36.000 14.08 0.00 36.54 2.83
2686 3887 5.498393 AGAGAGCTGTCATGATTTGATTGT 58.502 37.500 14.08 0.00 36.54 2.71
2687 3888 7.095144 GGATAGAGAGCTGTCATGATTTGATTG 60.095 40.741 14.08 0.00 36.54 2.67
2688 3889 6.935771 GGATAGAGAGCTGTCATGATTTGATT 59.064 38.462 14.08 0.00 36.54 2.57
2689 3890 6.465948 GGATAGAGAGCTGTCATGATTTGAT 58.534 40.000 14.08 0.00 36.54 2.57
2690 3891 5.508657 CGGATAGAGAGCTGTCATGATTTGA 60.509 44.000 14.08 0.00 34.27 2.69
2691 3892 4.685165 CGGATAGAGAGCTGTCATGATTTG 59.315 45.833 14.08 0.00 34.27 2.32
2692 3893 4.343526 ACGGATAGAGAGCTGTCATGATTT 59.656 41.667 14.08 0.00 34.27 2.17
2693 3894 3.894427 ACGGATAGAGAGCTGTCATGATT 59.106 43.478 14.08 0.00 34.27 2.57
2694 3895 3.495331 ACGGATAGAGAGCTGTCATGAT 58.505 45.455 14.08 3.21 34.27 2.45
2695 3896 2.881513 GACGGATAGAGAGCTGTCATGA 59.118 50.000 14.08 0.00 45.12 3.07
2696 3897 2.350293 CGACGGATAGAGAGCTGTCATG 60.350 54.545 14.08 0.35 45.92 3.07
2697 3898 1.876799 CGACGGATAGAGAGCTGTCAT 59.123 52.381 14.08 4.67 45.92 3.06
2698 3899 1.300481 CGACGGATAGAGAGCTGTCA 58.700 55.000 14.08 0.00 45.92 3.58
2699 3900 1.301423 ACGACGGATAGAGAGCTGTC 58.699 55.000 1.81 1.81 42.82 3.51
2700 3901 1.402259 CAACGACGGATAGAGAGCTGT 59.598 52.381 0.00 0.00 31.67 4.40
2701 3902 1.268794 CCAACGACGGATAGAGAGCTG 60.269 57.143 0.00 0.00 0.00 4.24
2702 3903 1.025812 CCAACGACGGATAGAGAGCT 58.974 55.000 0.00 0.00 0.00 4.09
2703 3904 0.030908 CCCAACGACGGATAGAGAGC 59.969 60.000 0.00 0.00 0.00 4.09
2704 3905 1.334243 GTCCCAACGACGGATAGAGAG 59.666 57.143 0.00 0.00 0.00 3.20
2705 3906 1.340308 TGTCCCAACGACGGATAGAGA 60.340 52.381 0.00 0.00 45.23 3.10
2706 3907 1.100510 TGTCCCAACGACGGATAGAG 58.899 55.000 0.00 0.00 45.23 2.43
2707 3908 1.771565 ATGTCCCAACGACGGATAGA 58.228 50.000 0.00 0.00 45.23 1.98
2708 3909 2.621998 ACTATGTCCCAACGACGGATAG 59.378 50.000 0.00 0.00 45.23 2.08
2709 3910 2.359848 CACTATGTCCCAACGACGGATA 59.640 50.000 0.00 0.00 45.23 2.59
2710 3911 1.136305 CACTATGTCCCAACGACGGAT 59.864 52.381 0.00 0.00 45.23 4.18
2711 3912 0.528924 CACTATGTCCCAACGACGGA 59.471 55.000 0.00 0.00 45.23 4.69
2712 3913 1.082117 GCACTATGTCCCAACGACGG 61.082 60.000 0.00 0.00 45.23 4.79
2713 3914 0.108804 AGCACTATGTCCCAACGACG 60.109 55.000 0.00 0.00 45.23 5.12
2714 3915 2.094762 AAGCACTATGTCCCAACGAC 57.905 50.000 0.00 0.00 42.33 4.34
2715 3916 2.563620 TGTAAGCACTATGTCCCAACGA 59.436 45.455 0.00 0.00 0.00 3.85
2716 3917 2.967362 TGTAAGCACTATGTCCCAACG 58.033 47.619 0.00 0.00 0.00 4.10
2717 3918 5.753921 GTCTATGTAAGCACTATGTCCCAAC 59.246 44.000 0.00 0.00 0.00 3.77
2718 3919 5.661312 AGTCTATGTAAGCACTATGTCCCAA 59.339 40.000 0.00 0.00 0.00 4.12
2719 3920 5.208890 AGTCTATGTAAGCACTATGTCCCA 58.791 41.667 0.00 0.00 0.00 4.37
2720 3921 5.793030 AGTCTATGTAAGCACTATGTCCC 57.207 43.478 0.00 0.00 0.00 4.46
2721 3922 8.112016 TGATAGTCTATGTAAGCACTATGTCC 57.888 38.462 0.00 0.00 32.93 4.02
2722 3923 8.240682 CCTGATAGTCTATGTAAGCACTATGTC 58.759 40.741 0.00 0.00 32.93 3.06
2723 3924 7.309499 GCCTGATAGTCTATGTAAGCACTATGT 60.309 40.741 0.00 0.00 32.93 2.29
2724 3925 7.032580 GCCTGATAGTCTATGTAAGCACTATG 58.967 42.308 0.00 0.00 32.93 2.23
2725 3926 6.951198 AGCCTGATAGTCTATGTAAGCACTAT 59.049 38.462 0.00 0.00 34.23 2.12
2726 3927 6.307776 AGCCTGATAGTCTATGTAAGCACTA 58.692 40.000 0.00 0.00 0.00 2.74
2727 3928 5.144100 AGCCTGATAGTCTATGTAAGCACT 58.856 41.667 0.00 0.00 0.00 4.40
2728 3929 5.461032 AGCCTGATAGTCTATGTAAGCAC 57.539 43.478 0.00 0.00 0.00 4.40
2729 3930 5.712446 CCTAGCCTGATAGTCTATGTAAGCA 59.288 44.000 0.00 0.00 0.00 3.91
2730 3931 5.946972 TCCTAGCCTGATAGTCTATGTAAGC 59.053 44.000 0.00 0.00 0.00 3.09
2731 3932 8.301002 GTTTCCTAGCCTGATAGTCTATGTAAG 58.699 40.741 0.00 0.00 0.00 2.34
2732 3933 8.005388 AGTTTCCTAGCCTGATAGTCTATGTAA 58.995 37.037 0.00 0.00 0.00 2.41
2733 3934 7.527796 AGTTTCCTAGCCTGATAGTCTATGTA 58.472 38.462 0.00 0.00 0.00 2.29
2734 3935 6.377912 AGTTTCCTAGCCTGATAGTCTATGT 58.622 40.000 0.00 0.00 0.00 2.29
2735 3936 6.071616 GGAGTTTCCTAGCCTGATAGTCTATG 60.072 46.154 0.00 0.00 32.53 2.23
2736 3937 6.014012 GGAGTTTCCTAGCCTGATAGTCTAT 58.986 44.000 0.00 0.00 32.53 1.98
2737 3938 5.103643 TGGAGTTTCCTAGCCTGATAGTCTA 60.104 44.000 0.00 0.00 37.46 2.59
2738 3939 4.219919 GGAGTTTCCTAGCCTGATAGTCT 58.780 47.826 0.00 0.00 32.53 3.24
2739 3940 3.961408 TGGAGTTTCCTAGCCTGATAGTC 59.039 47.826 0.00 0.00 37.46 2.59
2740 3941 3.995636 TGGAGTTTCCTAGCCTGATAGT 58.004 45.455 0.00 0.00 37.46 2.12
2741 3942 4.590647 TCATGGAGTTTCCTAGCCTGATAG 59.409 45.833 0.00 0.00 37.46 2.08
2742 3943 4.556697 TCATGGAGTTTCCTAGCCTGATA 58.443 43.478 0.00 0.00 37.46 2.15
2743 3944 3.387962 TCATGGAGTTTCCTAGCCTGAT 58.612 45.455 0.00 0.00 37.46 2.90
2744 3945 2.832838 TCATGGAGTTTCCTAGCCTGA 58.167 47.619 0.00 0.00 37.46 3.86
2745 3946 3.474600 CATCATGGAGTTTCCTAGCCTG 58.525 50.000 0.00 0.00 37.46 4.85
2746 3947 2.441001 CCATCATGGAGTTTCCTAGCCT 59.559 50.000 0.00 0.00 40.96 4.58
2747 3948 2.856222 CCATCATGGAGTTTCCTAGCC 58.144 52.381 0.00 0.00 40.96 3.93
2748 3949 2.225467 GCCATCATGGAGTTTCCTAGC 58.775 52.381 8.30 0.00 40.96 3.42
2749 3950 3.565764 TGCCATCATGGAGTTTCCTAG 57.434 47.619 8.30 0.00 40.96 3.02
2750 3951 4.042062 CCTATGCCATCATGGAGTTTCCTA 59.958 45.833 8.30 0.00 40.96 2.94
2751 3952 3.181436 CCTATGCCATCATGGAGTTTCCT 60.181 47.826 8.30 0.00 40.96 3.36
2752 3953 3.152341 CCTATGCCATCATGGAGTTTCC 58.848 50.000 8.30 0.00 40.96 3.13
2753 3954 3.825328 ACCTATGCCATCATGGAGTTTC 58.175 45.455 8.30 0.00 40.96 2.78
2754 3955 3.956199 CAACCTATGCCATCATGGAGTTT 59.044 43.478 8.30 0.00 40.96 2.66
2755 3956 3.053395 ACAACCTATGCCATCATGGAGTT 60.053 43.478 8.30 0.00 40.96 3.01
2756 3957 2.511218 ACAACCTATGCCATCATGGAGT 59.489 45.455 8.30 0.00 40.96 3.85
2757 3958 2.882761 CACAACCTATGCCATCATGGAG 59.117 50.000 8.30 0.00 40.96 3.86
2758 3959 2.934887 CACAACCTATGCCATCATGGA 58.065 47.619 8.30 0.00 40.96 3.41
2759 3960 1.338973 GCACAACCTATGCCATCATGG 59.661 52.381 0.00 0.00 41.55 3.66
2760 3961 2.304092 AGCACAACCTATGCCATCATG 58.696 47.619 0.00 0.00 44.53 3.07
2761 3962 2.742428 AGCACAACCTATGCCATCAT 57.258 45.000 0.00 0.00 44.53 2.45
2762 3963 2.512692 AAGCACAACCTATGCCATCA 57.487 45.000 0.00 0.00 44.53 3.07
2763 3964 3.503748 GGATAAGCACAACCTATGCCATC 59.496 47.826 0.00 0.00 44.53 3.51
2764 3965 3.139025 AGGATAAGCACAACCTATGCCAT 59.861 43.478 0.00 0.00 44.53 4.40
2765 3966 2.509548 AGGATAAGCACAACCTATGCCA 59.490 45.455 0.00 0.00 44.53 4.92
2766 3967 3.214696 AGGATAAGCACAACCTATGCC 57.785 47.619 0.00 0.00 44.53 4.40
2767 3968 5.335191 GCATTAGGATAAGCACAACCTATGC 60.335 44.000 0.00 0.00 43.74 3.14
2768 3969 5.182001 GGCATTAGGATAAGCACAACCTATG 59.818 44.000 0.00 0.00 35.37 2.23
2769 3970 5.316987 GGCATTAGGATAAGCACAACCTAT 58.683 41.667 0.00 0.00 35.37 2.57
2770 3971 4.714632 GGCATTAGGATAAGCACAACCTA 58.285 43.478 0.00 0.00 34.42 3.08
2771 3972 3.555966 GGCATTAGGATAAGCACAACCT 58.444 45.455 0.00 0.00 36.65 3.50
2772 3973 2.290641 CGGCATTAGGATAAGCACAACC 59.709 50.000 0.00 0.00 0.00 3.77
2773 3974 2.287009 GCGGCATTAGGATAAGCACAAC 60.287 50.000 0.00 0.00 0.00 3.32
2774 3975 1.946768 GCGGCATTAGGATAAGCACAA 59.053 47.619 0.00 0.00 0.00 3.33
2775 3976 1.140852 AGCGGCATTAGGATAAGCACA 59.859 47.619 1.45 0.00 0.00 4.57
2776 3977 1.801178 GAGCGGCATTAGGATAAGCAC 59.199 52.381 1.45 0.00 0.00 4.40
2777 3978 1.416030 TGAGCGGCATTAGGATAAGCA 59.584 47.619 1.45 0.00 0.00 3.91
2778 3979 2.169832 TGAGCGGCATTAGGATAAGC 57.830 50.000 1.45 0.00 0.00 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.