Multiple sequence alignment - TraesCS5B01G348000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G348000 chr5B 100.000 2483 0 0 1 2483 528787876 528785394 0.000000e+00 4586.0
1 TraesCS5B01G348000 chr5B 85.075 67 7 2 138 204 303226481 303226418 5.730000e-07 65.8
2 TraesCS5B01G348000 chr5D 91.878 1576 73 16 868 2423 435519777 435518237 0.000000e+00 2150.0
3 TraesCS5B01G348000 chr5D 88.235 578 31 19 1 565 435520514 435519961 0.000000e+00 656.0
4 TraesCS5B01G348000 chr5D 93.548 62 2 2 2420 2479 435518063 435518002 9.460000e-15 91.6
5 TraesCS5B01G348000 chr5D 96.000 50 1 1 567 615 435519826 435519777 2.050000e-11 80.5
6 TraesCS5B01G348000 chr5D 85.075 67 7 2 138 204 267848827 267848764 5.730000e-07 65.8
7 TraesCS5B01G348000 chr5A 90.835 1593 105 20 859 2423 549360396 549358817 0.000000e+00 2095.0
8 TraesCS5B01G348000 chr5A 85.897 312 20 10 316 611 549360695 549360392 6.670000e-81 311.0
9 TraesCS5B01G348000 chr5A 93.443 61 2 2 2420 2479 549358655 549358596 3.400000e-14 89.8
10 TraesCS5B01G348000 chr5A 96.000 50 1 1 141 190 542150831 542150783 2.050000e-11 80.5
11 TraesCS5B01G348000 chr5A 94.000 50 3 0 133 182 609874688 609874639 2.650000e-10 76.8
12 TraesCS5B01G348000 chr5A 100.000 28 0 0 662 689 605663398 605663425 4.000000e-03 52.8
13 TraesCS5B01G348000 chr6D 93.923 181 7 1 1656 1836 471104530 471104354 1.130000e-68 270.0
14 TraesCS5B01G348000 chr3D 96.364 55 2 0 133 187 483176074 483176020 9.460000e-15 91.6
15 TraesCS5B01G348000 chr2D 96.296 54 1 1 809 861 77157108 77157055 1.220000e-13 87.9
16 TraesCS5B01G348000 chr2D 97.917 48 1 0 811 858 77169778 77169731 1.580000e-12 84.2
17 TraesCS5B01G348000 chr3A 79.021 143 15 11 716 858 563000633 563000760 1.580000e-12 84.2
18 TraesCS5B01G348000 chr7D 92.857 56 4 0 132 187 6817225 6817280 5.690000e-12 82.4
19 TraesCS5B01G348000 chr7D 90.909 55 5 0 133 187 495319713 495319659 9.520000e-10 75.0
20 TraesCS5B01G348000 chr7A 92.727 55 4 0 133 187 563255573 563255519 2.050000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G348000 chr5B 528785394 528787876 2482 True 4586.000000 4586 100.000000 1 2483 1 chr5B.!!$R2 2482
1 TraesCS5B01G348000 chr5D 435518002 435520514 2512 True 744.525000 2150 92.415250 1 2479 4 chr5D.!!$R2 2478
2 TraesCS5B01G348000 chr5A 549358596 549360695 2099 True 831.933333 2095 90.058333 316 2479 3 chr5A.!!$R3 2163

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
792 949 0.035056 GTAGTGAAGCATGGTGGGCT 60.035 55.0 0.0 0.0 45.15 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1670 1846 1.02139 CGGAGTCCAACCATGACAGC 61.021 60.0 10.49 0.0 35.15 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 0.251564 ACAAACCGCCATCCATTCCA 60.252 50.000 0.00 0.00 0.00 3.53
50 51 0.970427 AAACCGCCATCCATTCCACC 60.970 55.000 0.00 0.00 0.00 4.61
51 52 2.901840 CCGCCATCCATTCCACCG 60.902 66.667 0.00 0.00 0.00 4.94
52 53 2.901840 CGCCATCCATTCCACCGG 60.902 66.667 0.00 0.00 0.00 5.28
53 54 3.219198 GCCATCCATTCCACCGGC 61.219 66.667 0.00 0.00 0.00 6.13
54 55 2.901840 CCATCCATTCCACCGGCG 60.902 66.667 0.00 0.00 0.00 6.46
55 56 2.901840 CATCCATTCCACCGGCGG 60.902 66.667 27.06 27.06 0.00 6.13
56 57 4.189580 ATCCATTCCACCGGCGGG 62.190 66.667 31.78 18.68 40.11 6.13
117 122 3.072468 CGGGTCCCTTCACGGCTA 61.072 66.667 6.29 0.00 0.00 3.93
126 131 1.067821 CCTTCACGGCTAGCTTAGGAG 59.932 57.143 15.72 8.27 0.00 3.69
131 136 0.960286 CGGCTAGCTTAGGAGGTACC 59.040 60.000 15.72 2.73 34.88 3.34
215 222 3.387091 TACGTGCCATGACCCGCT 61.387 61.111 0.00 0.00 0.00 5.52
216 223 3.657448 TACGTGCCATGACCCGCTG 62.657 63.158 0.00 0.00 0.00 5.18
217 224 4.758251 CGTGCCATGACCCGCTGA 62.758 66.667 0.00 0.00 0.00 4.26
218 225 2.821366 GTGCCATGACCCGCTGAG 60.821 66.667 0.00 0.00 0.00 3.35
219 226 4.783621 TGCCATGACCCGCTGAGC 62.784 66.667 0.00 0.00 0.00 4.26
220 227 4.783621 GCCATGACCCGCTGAGCA 62.784 66.667 4.88 0.00 0.00 4.26
221 228 2.513204 CCATGACCCGCTGAGCAG 60.513 66.667 4.88 0.00 0.00 4.24
222 229 2.267006 CATGACCCGCTGAGCAGT 59.733 61.111 4.88 0.00 0.00 4.40
232 239 1.085091 GCTGAGCAGTCTGGATGTTG 58.915 55.000 0.00 0.00 0.00 3.33
276 283 3.683822 GCTCCATGCTCATCAACTATAGC 59.316 47.826 0.00 0.00 38.95 2.97
280 287 4.504514 CCATGCTCATCAACTATAGCCAGT 60.505 45.833 0.00 0.00 33.99 4.00
282 289 4.697514 TGCTCATCAACTATAGCCAGTTC 58.302 43.478 0.00 0.00 36.61 3.01
296 303 2.833794 CCAGTTCTCGTGAAAGGAACA 58.166 47.619 12.26 0.00 40.97 3.18
305 312 2.784347 GTGAAAGGAACAAGGAGAGGG 58.216 52.381 0.00 0.00 0.00 4.30
319 326 0.615850 AGAGGGAAGGTACTGCTTGC 59.384 55.000 0.00 0.00 40.86 4.01
341 348 4.510711 GCCTCCGTTTTATTCCTAGTTAGC 59.489 45.833 0.00 0.00 0.00 3.09
386 393 4.370364 TTGTTCTTCAGTTTTCACCAGC 57.630 40.909 0.00 0.00 0.00 4.85
394 401 8.948631 TCTTCAGTTTTCACCAGCTTATATAG 57.051 34.615 0.00 0.00 0.00 1.31
420 427 0.761802 GTCTAGGGCTGGGGAATGAG 59.238 60.000 0.00 0.00 0.00 2.90
467 483 2.886523 CAGGTCAGTTTGATGGCTTTCA 59.113 45.455 0.00 0.00 0.00 2.69
498 518 0.599558 TTGTGCTCTCTGGCATTTGC 59.400 50.000 0.00 0.00 44.34 3.68
549 569 5.451659 CCACATTCCAATGTTTGTCAACTGA 60.452 40.000 2.01 0.00 46.95 3.41
550 570 5.459762 CACATTCCAATGTTTGTCAACTGAC 59.540 40.000 2.01 2.78 46.95 3.51
611 768 8.918202 TGAAGGTGTCACATACTAAGAAATTT 57.082 30.769 5.12 0.00 0.00 1.82
612 769 8.783093 TGAAGGTGTCACATACTAAGAAATTTG 58.217 33.333 5.12 0.00 0.00 2.32
613 770 8.691661 AAGGTGTCACATACTAAGAAATTTGT 57.308 30.769 5.12 0.00 0.00 2.83
615 772 9.787435 AGGTGTCACATACTAAGAAATTTGTTA 57.213 29.630 5.12 7.49 0.00 2.41
618 775 9.502091 TGTCACATACTAAGAAATTTGTTAGCT 57.498 29.630 26.63 18.58 37.50 3.32
622 779 9.392259 ACATACTAAGAAATTTGTTAGCTACCC 57.608 33.333 26.63 0.00 37.50 3.69
623 780 9.614792 CATACTAAGAAATTTGTTAGCTACCCT 57.385 33.333 26.63 13.87 37.50 4.34
624 781 9.833917 ATACTAAGAAATTTGTTAGCTACCCTC 57.166 33.333 26.63 0.00 37.50 4.30
625 782 7.919151 ACTAAGAAATTTGTTAGCTACCCTCT 58.081 34.615 26.63 9.05 37.50 3.69
626 783 9.043548 ACTAAGAAATTTGTTAGCTACCCTCTA 57.956 33.333 26.63 0.00 37.50 2.43
627 784 9.535878 CTAAGAAATTTGTTAGCTACCCTCTAG 57.464 37.037 18.82 0.00 29.07 2.43
628 785 7.735326 AGAAATTTGTTAGCTACCCTCTAGA 57.265 36.000 0.00 0.00 0.00 2.43
629 786 8.325477 AGAAATTTGTTAGCTACCCTCTAGAT 57.675 34.615 0.00 0.00 0.00 1.98
630 787 9.435570 AGAAATTTGTTAGCTACCCTCTAGATA 57.564 33.333 0.00 0.00 0.00 1.98
633 790 9.608718 AATTTGTTAGCTACCCTCTAGATATCT 57.391 33.333 10.73 10.73 0.00 1.98
636 793 9.688091 TTGTTAGCTACCCTCTAGATATCTATG 57.312 37.037 12.86 8.92 0.00 2.23
637 794 8.275758 TGTTAGCTACCCTCTAGATATCTATGG 58.724 40.741 12.86 16.09 0.00 2.74
638 795 8.496088 GTTAGCTACCCTCTAGATATCTATGGA 58.504 40.741 23.17 14.11 0.00 3.41
639 796 7.721537 AGCTACCCTCTAGATATCTATGGAT 57.278 40.000 23.17 14.77 36.07 3.41
640 797 8.125042 AGCTACCCTCTAGATATCTATGGATT 57.875 38.462 23.17 15.75 33.71 3.01
641 798 9.243762 AGCTACCCTCTAGATATCTATGGATTA 57.756 37.037 23.17 15.93 33.71 1.75
642 799 9.869667 GCTACCCTCTAGATATCTATGGATTAA 57.130 37.037 23.17 11.10 33.71 1.40
645 802 9.667607 ACCCTCTAGATATCTATGGATTAATGG 57.332 37.037 23.17 12.13 33.71 3.16
646 803 9.667607 CCCTCTAGATATCTATGGATTAATGGT 57.332 37.037 23.17 0.00 33.71 3.55
652 809 8.721479 AGATATCTATGGATTAATGGTGGATGG 58.279 37.037 2.53 0.00 33.71 3.51
653 810 6.975471 ATCTATGGATTAATGGTGGATGGA 57.025 37.500 0.00 0.00 0.00 3.41
654 811 6.378661 TCTATGGATTAATGGTGGATGGAG 57.621 41.667 0.00 0.00 0.00 3.86
655 812 5.851693 TCTATGGATTAATGGTGGATGGAGT 59.148 40.000 0.00 0.00 0.00 3.85
656 813 7.022496 TCTATGGATTAATGGTGGATGGAGTA 58.978 38.462 0.00 0.00 0.00 2.59
657 814 5.304686 TGGATTAATGGTGGATGGAGTAC 57.695 43.478 0.00 0.00 0.00 2.73
658 815 4.724293 TGGATTAATGGTGGATGGAGTACA 59.276 41.667 0.00 0.00 0.00 2.90
659 816 5.163205 TGGATTAATGGTGGATGGAGTACAG 60.163 44.000 0.00 0.00 0.00 2.74
660 817 4.771114 TTAATGGTGGATGGAGTACAGG 57.229 45.455 0.00 0.00 0.00 4.00
661 818 1.511613 ATGGTGGATGGAGTACAGGG 58.488 55.000 0.00 0.00 0.00 4.45
662 819 0.620410 TGGTGGATGGAGTACAGGGG 60.620 60.000 0.00 0.00 0.00 4.79
663 820 0.326238 GGTGGATGGAGTACAGGGGA 60.326 60.000 0.00 0.00 0.00 4.81
664 821 1.123928 GTGGATGGAGTACAGGGGAG 58.876 60.000 0.00 0.00 0.00 4.30
665 822 1.015609 TGGATGGAGTACAGGGGAGA 58.984 55.000 0.00 0.00 0.00 3.71
666 823 1.062886 TGGATGGAGTACAGGGGAGAG 60.063 57.143 0.00 0.00 0.00 3.20
667 824 1.218196 GGATGGAGTACAGGGGAGAGA 59.782 57.143 0.00 0.00 0.00 3.10
668 825 2.158234 GGATGGAGTACAGGGGAGAGAT 60.158 54.545 0.00 0.00 0.00 2.75
669 826 3.582164 GATGGAGTACAGGGGAGAGATT 58.418 50.000 0.00 0.00 0.00 2.40
670 827 4.449376 GGATGGAGTACAGGGGAGAGATTA 60.449 50.000 0.00 0.00 0.00 1.75
671 828 3.912248 TGGAGTACAGGGGAGAGATTAC 58.088 50.000 0.00 0.00 0.00 1.89
672 829 3.271225 TGGAGTACAGGGGAGAGATTACA 59.729 47.826 0.00 0.00 0.00 2.41
673 830 4.264668 TGGAGTACAGGGGAGAGATTACAA 60.265 45.833 0.00 0.00 0.00 2.41
674 831 4.099727 GGAGTACAGGGGAGAGATTACAAC 59.900 50.000 0.00 0.00 0.00 3.32
675 832 4.949121 AGTACAGGGGAGAGATTACAACT 58.051 43.478 0.00 0.00 0.00 3.16
676 833 5.342866 AGTACAGGGGAGAGATTACAACTT 58.657 41.667 0.00 0.00 0.00 2.66
677 834 4.559862 ACAGGGGAGAGATTACAACTTG 57.440 45.455 0.00 0.00 0.00 3.16
678 835 3.264450 ACAGGGGAGAGATTACAACTTGG 59.736 47.826 0.00 0.00 0.00 3.61
679 836 2.846827 AGGGGAGAGATTACAACTTGGG 59.153 50.000 0.00 0.00 0.00 4.12
680 837 2.092375 GGGGAGAGATTACAACTTGGGG 60.092 54.545 0.00 0.00 0.00 4.96
681 838 2.844348 GGGAGAGATTACAACTTGGGGA 59.156 50.000 0.00 0.00 0.00 4.81
682 839 3.265995 GGGAGAGATTACAACTTGGGGAA 59.734 47.826 0.00 0.00 0.00 3.97
683 840 4.518249 GGAGAGATTACAACTTGGGGAAG 58.482 47.826 0.00 0.00 0.00 3.46
684 841 4.225267 GGAGAGATTACAACTTGGGGAAGA 59.775 45.833 0.00 0.00 0.00 2.87
685 842 5.280521 GGAGAGATTACAACTTGGGGAAGAA 60.281 44.000 0.00 0.00 0.00 2.52
686 843 5.810095 AGAGATTACAACTTGGGGAAGAAG 58.190 41.667 0.00 0.00 0.00 2.85
687 844 5.548056 AGAGATTACAACTTGGGGAAGAAGA 59.452 40.000 0.00 0.00 0.00 2.87
688 845 6.044404 AGAGATTACAACTTGGGGAAGAAGAA 59.956 38.462 0.00 0.00 0.00 2.52
689 846 6.241645 AGATTACAACTTGGGGAAGAAGAAG 58.758 40.000 0.00 0.00 0.00 2.85
690 847 2.587522 ACAACTTGGGGAAGAAGAAGC 58.412 47.619 0.00 0.00 0.00 3.86
691 848 2.091885 ACAACTTGGGGAAGAAGAAGCA 60.092 45.455 0.00 0.00 0.00 3.91
692 849 2.555757 CAACTTGGGGAAGAAGAAGCAG 59.444 50.000 0.00 0.00 0.00 4.24
693 850 1.172175 CTTGGGGAAGAAGAAGCAGC 58.828 55.000 0.00 0.00 0.00 5.25
694 851 0.773644 TTGGGGAAGAAGAAGCAGCT 59.226 50.000 0.00 0.00 0.00 4.24
695 852 1.656587 TGGGGAAGAAGAAGCAGCTA 58.343 50.000 0.00 0.00 0.00 3.32
696 853 1.985159 TGGGGAAGAAGAAGCAGCTAA 59.015 47.619 0.00 0.00 0.00 3.09
697 854 2.026822 TGGGGAAGAAGAAGCAGCTAAG 60.027 50.000 0.00 0.00 0.00 2.18
698 855 2.237392 GGGGAAGAAGAAGCAGCTAAGA 59.763 50.000 0.00 0.00 0.00 2.10
699 856 3.307762 GGGGAAGAAGAAGCAGCTAAGAA 60.308 47.826 0.00 0.00 0.00 2.52
700 857 3.938334 GGGAAGAAGAAGCAGCTAAGAAG 59.062 47.826 0.00 0.00 0.00 2.85
701 858 4.323104 GGGAAGAAGAAGCAGCTAAGAAGA 60.323 45.833 0.00 0.00 0.00 2.87
702 859 5.241662 GGAAGAAGAAGCAGCTAAGAAGAA 58.758 41.667 0.00 0.00 0.00 2.52
703 860 5.703130 GGAAGAAGAAGCAGCTAAGAAGAAA 59.297 40.000 0.00 0.00 0.00 2.52
704 861 6.374053 GGAAGAAGAAGCAGCTAAGAAGAAAT 59.626 38.462 0.00 0.00 0.00 2.17
705 862 6.740411 AGAAGAAGCAGCTAAGAAGAAATG 57.260 37.500 0.00 0.00 0.00 2.32
706 863 5.647225 AGAAGAAGCAGCTAAGAAGAAATGG 59.353 40.000 0.00 0.00 0.00 3.16
707 864 5.171339 AGAAGCAGCTAAGAAGAAATGGA 57.829 39.130 0.00 0.00 0.00 3.41
708 865 5.184711 AGAAGCAGCTAAGAAGAAATGGAG 58.815 41.667 0.00 0.00 0.00 3.86
709 866 4.833478 AGCAGCTAAGAAGAAATGGAGA 57.167 40.909 0.00 0.00 0.00 3.71
710 867 5.370875 AGCAGCTAAGAAGAAATGGAGAT 57.629 39.130 0.00 0.00 0.00 2.75
711 868 6.491714 AGCAGCTAAGAAGAAATGGAGATA 57.508 37.500 0.00 0.00 0.00 1.98
712 869 6.287525 AGCAGCTAAGAAGAAATGGAGATAC 58.712 40.000 0.00 0.00 0.00 2.24
713 870 6.051717 GCAGCTAAGAAGAAATGGAGATACA 58.948 40.000 0.00 0.00 0.00 2.29
714 871 6.540189 GCAGCTAAGAAGAAATGGAGATACAA 59.460 38.462 0.00 0.00 0.00 2.41
715 872 7.254727 GCAGCTAAGAAGAAATGGAGATACAAG 60.255 40.741 0.00 0.00 0.00 3.16
716 873 6.765512 AGCTAAGAAGAAATGGAGATACAAGC 59.234 38.462 0.00 0.00 0.00 4.01
717 874 6.017523 GCTAAGAAGAAATGGAGATACAAGCC 60.018 42.308 0.00 0.00 0.00 4.35
718 875 4.446371 AGAAGAAATGGAGATACAAGCCG 58.554 43.478 0.00 0.00 0.00 5.52
719 876 2.565841 AGAAATGGAGATACAAGCCGC 58.434 47.619 0.00 0.00 0.00 6.53
720 877 1.604278 GAAATGGAGATACAAGCCGCC 59.396 52.381 0.00 0.00 0.00 6.13
721 878 0.532862 AATGGAGATACAAGCCGCCG 60.533 55.000 0.00 0.00 0.00 6.46
722 879 2.967615 GGAGATACAAGCCGCCGC 60.968 66.667 0.00 0.00 0.00 6.53
723 880 2.967615 GAGATACAAGCCGCCGCC 60.968 66.667 0.00 0.00 34.57 6.13
724 881 4.891727 AGATACAAGCCGCCGCCG 62.892 66.667 0.00 0.00 34.57 6.46
726 883 4.770874 ATACAAGCCGCCGCCGTT 62.771 61.111 0.00 0.00 34.57 4.44
735 892 3.423154 GCCGCCGTTCAGTTCCTG 61.423 66.667 0.00 0.00 0.00 3.86
736 893 2.342279 CCGCCGTTCAGTTCCTGA 59.658 61.111 0.00 0.00 38.87 3.86
737 894 1.079127 CCGCCGTTCAGTTCCTGAT 60.079 57.895 0.00 0.00 40.39 2.90
738 895 1.084370 CCGCCGTTCAGTTCCTGATC 61.084 60.000 0.00 0.00 40.39 2.92
739 896 1.084370 CGCCGTTCAGTTCCTGATCC 61.084 60.000 0.00 0.00 40.39 3.36
740 897 0.250513 GCCGTTCAGTTCCTGATCCT 59.749 55.000 0.00 0.00 40.39 3.24
741 898 1.480954 GCCGTTCAGTTCCTGATCCTA 59.519 52.381 0.00 0.00 40.39 2.94
742 899 2.482142 GCCGTTCAGTTCCTGATCCTAG 60.482 54.545 0.00 0.00 40.39 3.02
743 900 2.482142 CCGTTCAGTTCCTGATCCTAGC 60.482 54.545 0.00 0.00 40.39 3.42
744 901 2.482142 CGTTCAGTTCCTGATCCTAGCC 60.482 54.545 0.00 0.00 40.39 3.93
745 902 1.403814 TCAGTTCCTGATCCTAGCCG 58.596 55.000 0.00 0.00 35.39 5.52
746 903 0.390860 CAGTTCCTGATCCTAGCCGG 59.609 60.000 0.00 0.00 32.44 6.13
747 904 0.760945 AGTTCCTGATCCTAGCCGGG 60.761 60.000 2.18 0.00 0.00 5.73
748 905 0.759436 GTTCCTGATCCTAGCCGGGA 60.759 60.000 2.18 0.00 39.95 5.14
750 907 0.542938 TCCTGATCCTAGCCGGGATG 60.543 60.000 12.08 0.57 45.18 3.51
751 908 1.548357 CCTGATCCTAGCCGGGATGG 61.548 65.000 12.08 0.00 45.18 3.51
760 917 4.473520 CCGGGATGGCTGCTCGTT 62.474 66.667 0.00 0.00 0.00 3.85
761 918 2.892425 CGGGATGGCTGCTCGTTC 60.892 66.667 0.00 0.00 0.00 3.95
762 919 2.586792 GGGATGGCTGCTCGTTCT 59.413 61.111 0.00 0.00 0.00 3.01
763 920 1.817099 GGGATGGCTGCTCGTTCTG 60.817 63.158 0.00 0.00 0.00 3.02
764 921 1.078848 GGATGGCTGCTCGTTCTGT 60.079 57.895 0.00 0.00 0.00 3.41
765 922 0.674895 GGATGGCTGCTCGTTCTGTT 60.675 55.000 0.00 0.00 0.00 3.16
766 923 1.405526 GGATGGCTGCTCGTTCTGTTA 60.406 52.381 0.00 0.00 0.00 2.41
767 924 2.555199 GATGGCTGCTCGTTCTGTTAT 58.445 47.619 0.00 0.00 0.00 1.89
768 925 2.010145 TGGCTGCTCGTTCTGTTATC 57.990 50.000 0.00 0.00 0.00 1.75
769 926 1.291132 GGCTGCTCGTTCTGTTATCC 58.709 55.000 0.00 0.00 0.00 2.59
770 927 1.291132 GCTGCTCGTTCTGTTATCCC 58.709 55.000 0.00 0.00 0.00 3.85
771 928 1.560923 CTGCTCGTTCTGTTATCCCG 58.439 55.000 0.00 0.00 0.00 5.14
772 929 0.892755 TGCTCGTTCTGTTATCCCGT 59.107 50.000 0.00 0.00 0.00 5.28
773 930 1.278238 GCTCGTTCTGTTATCCCGTG 58.722 55.000 0.00 0.00 0.00 4.94
774 931 1.403780 GCTCGTTCTGTTATCCCGTGT 60.404 52.381 0.00 0.00 0.00 4.49
775 932 2.159338 GCTCGTTCTGTTATCCCGTGTA 60.159 50.000 0.00 0.00 0.00 2.90
776 933 3.692576 CTCGTTCTGTTATCCCGTGTAG 58.307 50.000 0.00 0.00 0.00 2.74
777 934 3.084039 TCGTTCTGTTATCCCGTGTAGT 58.916 45.455 0.00 0.00 0.00 2.73
778 935 3.119743 TCGTTCTGTTATCCCGTGTAGTG 60.120 47.826 0.00 0.00 0.00 2.74
779 936 3.119743 CGTTCTGTTATCCCGTGTAGTGA 60.120 47.826 0.00 0.00 0.00 3.41
780 937 4.616604 CGTTCTGTTATCCCGTGTAGTGAA 60.617 45.833 0.00 0.00 0.00 3.18
781 938 4.713824 TCTGTTATCCCGTGTAGTGAAG 57.286 45.455 0.00 0.00 0.00 3.02
782 939 3.119245 TCTGTTATCCCGTGTAGTGAAGC 60.119 47.826 0.00 0.00 0.00 3.86
783 940 2.563620 TGTTATCCCGTGTAGTGAAGCA 59.436 45.455 0.00 0.00 0.00 3.91
784 941 3.196901 TGTTATCCCGTGTAGTGAAGCAT 59.803 43.478 0.00 0.00 0.00 3.79
785 942 2.315925 ATCCCGTGTAGTGAAGCATG 57.684 50.000 0.00 0.00 0.00 4.06
786 943 0.249120 TCCCGTGTAGTGAAGCATGG 59.751 55.000 0.00 0.00 40.49 3.66
787 944 0.036388 CCCGTGTAGTGAAGCATGGT 60.036 55.000 0.00 0.00 39.48 3.55
788 945 1.078709 CCGTGTAGTGAAGCATGGTG 58.921 55.000 0.00 0.00 37.09 4.17
789 946 1.078709 CGTGTAGTGAAGCATGGTGG 58.921 55.000 0.00 0.00 0.00 4.61
790 947 1.453155 GTGTAGTGAAGCATGGTGGG 58.547 55.000 0.00 0.00 0.00 4.61
791 948 0.322456 TGTAGTGAAGCATGGTGGGC 60.322 55.000 0.00 0.00 0.00 5.36
792 949 0.035056 GTAGTGAAGCATGGTGGGCT 60.035 55.000 0.00 0.00 45.15 5.19
793 950 0.035152 TAGTGAAGCATGGTGGGCTG 60.035 55.000 0.00 0.00 41.66 4.85
794 951 2.036098 TGAAGCATGGTGGGCTGG 59.964 61.111 0.00 0.00 41.66 4.85
795 952 2.757099 GAAGCATGGTGGGCTGGG 60.757 66.667 0.00 0.00 41.66 4.45
799 956 2.284112 CATGGTGGGCTGGGCTTT 60.284 61.111 0.00 0.00 0.00 3.51
800 957 2.037847 ATGGTGGGCTGGGCTTTC 59.962 61.111 0.00 0.00 0.00 2.62
801 958 2.855770 ATGGTGGGCTGGGCTTTCA 61.856 57.895 0.00 0.00 0.00 2.69
802 959 2.037847 GGTGGGCTGGGCTTTCAT 59.962 61.111 0.00 0.00 0.00 2.57
803 960 2.054453 GGTGGGCTGGGCTTTCATC 61.054 63.158 0.00 0.00 0.00 2.92
804 961 1.000396 GTGGGCTGGGCTTTCATCT 60.000 57.895 0.00 0.00 0.00 2.90
805 962 0.255890 GTGGGCTGGGCTTTCATCTA 59.744 55.000 0.00 0.00 0.00 1.98
806 963 1.133668 GTGGGCTGGGCTTTCATCTAT 60.134 52.381 0.00 0.00 0.00 1.98
807 964 1.143684 TGGGCTGGGCTTTCATCTATC 59.856 52.381 0.00 0.00 0.00 2.08
808 965 1.517242 GGCTGGGCTTTCATCTATCG 58.483 55.000 0.00 0.00 0.00 2.92
809 966 0.871057 GCTGGGCTTTCATCTATCGC 59.129 55.000 0.00 0.00 0.00 4.58
810 967 1.542108 GCTGGGCTTTCATCTATCGCT 60.542 52.381 0.00 0.00 0.00 4.93
811 968 2.141517 CTGGGCTTTCATCTATCGCTG 58.858 52.381 0.00 0.00 0.00 5.18
812 969 1.202687 TGGGCTTTCATCTATCGCTGG 60.203 52.381 0.00 0.00 0.00 4.85
813 970 1.517242 GGCTTTCATCTATCGCTGGG 58.483 55.000 0.00 0.00 0.00 4.45
814 971 0.871057 GCTTTCATCTATCGCTGGGC 59.129 55.000 0.00 0.00 0.00 5.36
815 972 1.517242 CTTTCATCTATCGCTGGGCC 58.483 55.000 0.00 0.00 0.00 5.80
816 973 1.071385 CTTTCATCTATCGCTGGGCCT 59.929 52.381 4.53 0.00 0.00 5.19
817 974 1.131638 TTCATCTATCGCTGGGCCTT 58.868 50.000 4.53 0.00 0.00 4.35
818 975 0.681733 TCATCTATCGCTGGGCCTTC 59.318 55.000 4.53 0.00 0.00 3.46
819 976 0.668706 CATCTATCGCTGGGCCTTCG 60.669 60.000 4.53 8.46 0.00 3.79
820 977 1.115930 ATCTATCGCTGGGCCTTCGT 61.116 55.000 4.53 2.22 0.00 3.85
821 978 1.300233 CTATCGCTGGGCCTTCGTC 60.300 63.158 4.53 0.00 0.00 4.20
822 979 1.739338 CTATCGCTGGGCCTTCGTCT 61.739 60.000 4.53 3.49 0.00 4.18
823 980 2.016393 TATCGCTGGGCCTTCGTCTG 62.016 60.000 4.53 0.00 0.00 3.51
824 981 4.379243 CGCTGGGCCTTCGTCTGT 62.379 66.667 4.53 0.00 0.00 3.41
825 982 2.435059 GCTGGGCCTTCGTCTGTC 60.435 66.667 4.53 0.00 0.00 3.51
826 983 2.125912 CTGGGCCTTCGTCTGTCG 60.126 66.667 4.53 0.00 41.41 4.35
827 984 4.373116 TGGGCCTTCGTCTGTCGC 62.373 66.667 4.53 0.00 39.67 5.19
828 985 4.070552 GGGCCTTCGTCTGTCGCT 62.071 66.667 0.84 0.00 39.67 4.93
829 986 2.811317 GGCCTTCGTCTGTCGCTG 60.811 66.667 0.00 0.00 39.67 5.18
830 987 2.811317 GCCTTCGTCTGTCGCTGG 60.811 66.667 0.00 0.00 39.67 4.85
831 988 2.125912 CCTTCGTCTGTCGCTGGG 60.126 66.667 0.00 0.00 39.67 4.45
832 989 2.811317 CTTCGTCTGTCGCTGGGC 60.811 66.667 0.00 0.00 39.67 5.36
833 990 4.373116 TTCGTCTGTCGCTGGGCC 62.373 66.667 0.00 0.00 39.67 5.80
844 1001 2.676121 CTGGGCCGCACAATGGAA 60.676 61.111 0.00 0.00 0.00 3.53
845 1002 2.203552 TGGGCCGCACAATGGAAA 60.204 55.556 0.00 0.00 0.00 3.13
846 1003 2.216750 CTGGGCCGCACAATGGAAAG 62.217 60.000 0.00 0.00 0.00 2.62
847 1004 2.573340 GGCCGCACAATGGAAAGG 59.427 61.111 0.00 0.00 0.00 3.11
848 1005 2.573340 GCCGCACAATGGAAAGGG 59.427 61.111 0.00 0.00 0.00 3.95
849 1006 2.275380 GCCGCACAATGGAAAGGGT 61.275 57.895 0.00 0.00 0.00 4.34
850 1007 1.883021 CCGCACAATGGAAAGGGTC 59.117 57.895 0.00 0.00 0.00 4.46
851 1008 1.501741 CGCACAATGGAAAGGGTCG 59.498 57.895 0.00 0.00 0.00 4.79
852 1009 1.212751 GCACAATGGAAAGGGTCGC 59.787 57.895 0.00 0.00 0.00 5.19
853 1010 1.244019 GCACAATGGAAAGGGTCGCT 61.244 55.000 0.00 0.00 0.00 4.93
854 1011 1.948611 GCACAATGGAAAGGGTCGCTA 60.949 52.381 0.00 0.00 0.00 4.26
855 1012 2.432444 CACAATGGAAAGGGTCGCTAA 58.568 47.619 0.00 0.00 0.00 3.09
856 1013 2.161609 CACAATGGAAAGGGTCGCTAAC 59.838 50.000 0.00 0.00 0.00 2.34
857 1014 2.224670 ACAATGGAAAGGGTCGCTAACA 60.225 45.455 0.00 0.00 0.00 2.41
858 1015 2.817258 CAATGGAAAGGGTCGCTAACAA 59.183 45.455 0.00 0.00 0.00 2.83
859 1016 2.642154 TGGAAAGGGTCGCTAACAAA 57.358 45.000 0.00 0.00 0.00 2.83
860 1017 2.933573 TGGAAAGGGTCGCTAACAAAA 58.066 42.857 0.00 0.00 0.00 2.44
861 1018 3.492337 TGGAAAGGGTCGCTAACAAAAT 58.508 40.909 0.00 0.00 0.00 1.82
862 1019 3.892588 TGGAAAGGGTCGCTAACAAAATT 59.107 39.130 0.00 0.00 0.00 1.82
863 1020 4.022676 TGGAAAGGGTCGCTAACAAAATTC 60.023 41.667 0.00 0.00 0.00 2.17
864 1021 4.482386 GAAAGGGTCGCTAACAAAATTCC 58.518 43.478 0.00 0.00 0.00 3.01
865 1022 2.443416 AGGGTCGCTAACAAAATTCCC 58.557 47.619 0.00 0.00 0.00 3.97
866 1023 1.475280 GGGTCGCTAACAAAATTCCCC 59.525 52.381 0.00 0.00 0.00 4.81
899 1056 2.427506 GAACAGAGGCACCTAAGTTGG 58.572 52.381 10.07 0.00 0.00 3.77
1031 1197 1.526917 ACTGCAGCAAGAAAGCGGT 60.527 52.632 15.27 0.00 42.65 5.68
1048 1214 3.555324 TTGTGGCTGGTGGCGAGA 61.555 61.111 0.00 0.00 42.94 4.04
1085 1251 1.476471 CCCAGAAGATGTGATCCAGCC 60.476 57.143 0.00 0.00 0.00 4.85
1176 1342 2.061220 CCTCTGGAAGTCTGTGCCA 58.939 57.895 0.00 0.00 33.76 4.92
1186 1360 0.390340 GTCTGTGCCATCTCTTCGCA 60.390 55.000 0.00 0.00 0.00 5.10
1221 1397 3.053896 GCCTACCGGTGTTGCCAC 61.054 66.667 19.93 0.00 41.06 5.01
1225 1401 2.430382 CTACCGGTGTTGCCACGACT 62.430 60.000 19.93 0.00 42.80 4.18
1243 1419 3.663908 GACTTGAAGCGTTTCATCGATG 58.336 45.455 19.61 19.61 42.60 3.84
1328 1504 2.035442 GCTCGGAGCAGTTTCACCC 61.035 63.158 24.42 0.00 41.89 4.61
1386 1562 4.065789 ACAAAGTGAGGGTTCTTCGATTC 58.934 43.478 0.00 0.00 0.00 2.52
1387 1563 4.065088 CAAAGTGAGGGTTCTTCGATTCA 58.935 43.478 0.00 0.00 0.00 2.57
1410 1586 0.104777 TCCTAGCTGGCCATGATCCT 60.105 55.000 5.51 0.26 35.26 3.24
1440 1616 3.934962 GCCGGGGCTCTCATCTCC 61.935 72.222 2.18 0.00 38.26 3.71
1443 1619 2.851071 CGGGGCTCTCATCTCCGAC 61.851 68.421 0.00 0.00 42.94 4.79
1459 1635 3.659786 TCCGACCACTTGACAACATTAG 58.340 45.455 0.00 0.00 0.00 1.73
1479 1655 3.114065 AGTTCTTCGTTGTGTCGAGTTC 58.886 45.455 0.00 0.00 40.86 3.01
1480 1656 3.114065 GTTCTTCGTTGTGTCGAGTTCT 58.886 45.455 0.00 0.00 40.86 3.01
1498 1674 6.712998 CGAGTTCTAGGATTTCTCTCTGGATA 59.287 42.308 0.00 0.00 0.00 2.59
1560 1736 4.079253 AGTGTGTAATCAACATTGGGACC 58.921 43.478 0.00 0.00 41.10 4.46
1625 1801 0.253044 TTTGGCTCTCAGGATTCCCG 59.747 55.000 0.00 0.00 37.58 5.14
1643 1819 0.388649 CGGTGTCTTACTTCTGCGCT 60.389 55.000 9.73 0.00 0.00 5.92
1670 1846 1.886542 GGTTACCTTGGAAGTTGCTGG 59.113 52.381 0.00 0.91 0.00 4.85
1738 1914 4.207165 AGCGGCATTTATAAACACCAGAT 58.793 39.130 15.25 6.96 0.00 2.90
1739 1915 5.373222 AGCGGCATTTATAAACACCAGATA 58.627 37.500 15.25 0.00 0.00 1.98
1740 1916 5.238650 AGCGGCATTTATAAACACCAGATAC 59.761 40.000 15.25 3.33 0.00 2.24
1741 1917 5.675970 CGGCATTTATAAACACCAGATACG 58.324 41.667 15.25 0.00 0.00 3.06
1766 1942 4.457466 TGTCTTAAAGGGTTCTTGTGGAC 58.543 43.478 0.00 0.00 32.75 4.02
1843 2023 4.209911 GCTGATTTTGTGTTTCTTGAAGGC 59.790 41.667 0.00 0.00 0.00 4.35
1895 2075 5.466728 ACAGCTGAATACTTTATGGTATGCG 59.533 40.000 23.35 0.00 31.94 4.73
1903 2083 1.948104 TTATGGTATGCGTGCACTCC 58.052 50.000 16.19 6.35 0.00 3.85
1970 2153 8.106247 TGTTTTCTGTTCACCTTGGTATTATC 57.894 34.615 0.00 0.00 0.00 1.75
2056 2239 7.792374 TTTCAGAACAGATATAGAATGGTGC 57.208 36.000 0.00 0.00 0.00 5.01
2109 2292 2.760650 CTCAGTGACTGGTGTATGGCTA 59.239 50.000 13.33 0.00 31.51 3.93
2117 2300 7.125204 AGTGACTGGTGTATGGCTAATTACTTA 59.875 37.037 0.00 0.00 0.00 2.24
2118 2301 7.931948 GTGACTGGTGTATGGCTAATTACTTAT 59.068 37.037 0.00 0.00 0.00 1.73
2119 2302 7.931407 TGACTGGTGTATGGCTAATTACTTATG 59.069 37.037 0.00 0.00 0.00 1.90
2151 2334 1.151668 CTTTCTCAAGCACTCACCGG 58.848 55.000 0.00 0.00 0.00 5.28
2246 2444 3.077229 TGTCTTTGAAATTGCCACGTG 57.923 42.857 9.08 9.08 0.00 4.49
2276 2474 8.746922 TGATTCATTTCAGTCAACTATTTTGC 57.253 30.769 0.00 0.00 0.00 3.68
2330 2529 1.538849 CCTGCAAGCCAAAGGACAAAC 60.539 52.381 0.00 0.00 32.43 2.93
2351 2550 6.727824 AACTCTTGGTATCAAAACATCTCG 57.272 37.500 0.00 0.00 31.77 4.04
2379 2578 5.510674 CAGTCGAAATCAATCATGTGAAAGC 59.489 40.000 0.00 0.00 0.00 3.51
2382 2581 4.796830 CGAAATCAATCATGTGAAAGCTGG 59.203 41.667 0.00 0.00 0.00 4.85
2445 2824 8.096414 CCATTTGGTGAGGTTAGAATGAAAAAT 58.904 33.333 0.00 0.00 0.00 1.82
2479 2858 9.965824 CACCTAACTTATTTCAGTGAAAATGTT 57.034 29.630 21.57 23.23 35.11 2.71
2480 2859 9.965824 ACCTAACTTATTTCAGTGAAAATGTTG 57.034 29.630 26.52 19.33 35.11 3.33
2481 2860 9.965824 CCTAACTTATTTCAGTGAAAATGTTGT 57.034 29.630 26.52 17.81 35.11 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.004862 TGGAATGGATGGCGGTTTGTA 59.995 47.619 0.00 0.00 0.00 2.41
39 40 4.189580 CCCGCCGGTGGAATGGAT 62.190 66.667 35.83 0.00 0.00 3.41
96 97 2.678934 CGTGAAGGGACCCGAGGA 60.679 66.667 4.40 0.00 0.00 3.71
102 107 1.900545 AAGCTAGCCGTGAAGGGACC 61.901 60.000 12.13 0.00 41.48 4.46
126 131 4.273318 TCTTTACGGAGGAAGTAGGTACC 58.727 47.826 2.73 2.73 0.00 3.34
183 190 4.142315 TGGCACGTACTCCTTCTGTATTAC 60.142 45.833 0.00 0.00 0.00 1.89
190 197 1.204941 GTCATGGCACGTACTCCTTCT 59.795 52.381 0.00 0.00 0.00 2.85
195 202 1.518572 CGGGTCATGGCACGTACTC 60.519 63.158 15.25 0.00 0.00 2.59
215 222 0.689055 AGCAACATCCAGACTGCTCA 59.311 50.000 0.00 0.00 41.18 4.26
216 223 3.547567 AGCAACATCCAGACTGCTC 57.452 52.632 0.00 0.00 41.18 4.26
218 225 0.801251 GTGAGCAACATCCAGACTGC 59.199 55.000 0.00 0.00 34.96 4.40
219 226 1.002888 AGGTGAGCAACATCCAGACTG 59.997 52.381 0.00 0.00 0.00 3.51
220 227 1.002888 CAGGTGAGCAACATCCAGACT 59.997 52.381 0.00 0.00 0.00 3.24
221 228 1.446907 CAGGTGAGCAACATCCAGAC 58.553 55.000 0.00 0.00 0.00 3.51
222 229 0.321919 GCAGGTGAGCAACATCCAGA 60.322 55.000 0.00 0.00 0.00 3.86
258 265 4.639334 ACTGGCTATAGTTGATGAGCATG 58.361 43.478 0.84 0.00 36.63 4.06
276 283 2.833794 TGTTCCTTTCACGAGAACTGG 58.166 47.619 0.00 1.38 40.42 4.00
280 287 3.386726 TCTCCTTGTTCCTTTCACGAGAA 59.613 43.478 0.00 0.00 0.00 2.87
282 289 3.321497 CTCTCCTTGTTCCTTTCACGAG 58.679 50.000 0.00 0.00 0.00 4.18
296 303 1.079658 AGCAGTACCTTCCCTCTCCTT 59.920 52.381 0.00 0.00 0.00 3.36
305 312 0.741221 CGGAGGCAAGCAGTACCTTC 60.741 60.000 0.00 0.00 32.67 3.46
319 326 4.743644 CGCTAACTAGGAATAAAACGGAGG 59.256 45.833 0.00 0.00 0.00 4.30
386 393 7.069331 CCAGCCCTAGACATCCTTCTATATAAG 59.931 44.444 0.00 0.00 0.00 1.73
394 401 0.761802 CCCAGCCCTAGACATCCTTC 59.238 60.000 0.00 0.00 0.00 3.46
420 427 5.992217 AGTGTAGAATTCACTTGGACAGAAC 59.008 40.000 8.44 0.00 42.50 3.01
467 483 7.093814 TGCCAGAGAGCACAAAAATAAATACAT 60.094 33.333 0.00 0.00 38.00 2.29
549 569 2.764010 TCACAGGTAGAATGGTATGCGT 59.236 45.455 0.00 0.00 0.00 5.24
550 570 3.452755 TCACAGGTAGAATGGTATGCG 57.547 47.619 0.00 0.00 0.00 4.73
611 768 8.275758 CCATAGATATCTAGAGGGTAGCTAACA 58.724 40.741 17.22 0.00 0.00 2.41
612 769 8.496088 TCCATAGATATCTAGAGGGTAGCTAAC 58.504 40.741 23.67 0.00 31.95 2.34
613 770 8.640033 TCCATAGATATCTAGAGGGTAGCTAA 57.360 38.462 23.67 8.65 31.95 3.09
615 772 7.721537 ATCCATAGATATCTAGAGGGTAGCT 57.278 40.000 23.67 0.00 31.95 3.32
616 773 9.869667 TTAATCCATAGATATCTAGAGGGTAGC 57.130 37.037 23.67 0.00 31.95 3.58
619 776 9.667607 CCATTAATCCATAGATATCTAGAGGGT 57.332 37.037 23.67 18.36 31.95 4.34
620 777 9.667607 ACCATTAATCCATAGATATCTAGAGGG 57.332 37.037 23.67 20.12 31.95 4.30
626 783 8.721479 CCATCCACCATTAATCCATAGATATCT 58.279 37.037 10.73 10.73 30.42 1.98
627 784 8.717717 TCCATCCACCATTAATCCATAGATATC 58.282 37.037 0.00 0.00 30.42 1.63
628 785 8.642964 TCCATCCACCATTAATCCATAGATAT 57.357 34.615 0.00 0.00 30.42 1.63
629 786 7.684186 ACTCCATCCACCATTAATCCATAGATA 59.316 37.037 0.00 0.00 30.42 1.98
630 787 6.506770 ACTCCATCCACCATTAATCCATAGAT 59.493 38.462 0.00 0.00 0.00 1.98
631 788 5.851693 ACTCCATCCACCATTAATCCATAGA 59.148 40.000 0.00 0.00 0.00 1.98
632 789 6.131972 ACTCCATCCACCATTAATCCATAG 57.868 41.667 0.00 0.00 0.00 2.23
633 790 6.560687 TGTACTCCATCCACCATTAATCCATA 59.439 38.462 0.00 0.00 0.00 2.74
634 791 5.372363 TGTACTCCATCCACCATTAATCCAT 59.628 40.000 0.00 0.00 0.00 3.41
635 792 4.724293 TGTACTCCATCCACCATTAATCCA 59.276 41.667 0.00 0.00 0.00 3.41
636 793 5.304686 TGTACTCCATCCACCATTAATCC 57.695 43.478 0.00 0.00 0.00 3.01
637 794 5.308825 CCTGTACTCCATCCACCATTAATC 58.691 45.833 0.00 0.00 0.00 1.75
638 795 4.104738 CCCTGTACTCCATCCACCATTAAT 59.895 45.833 0.00 0.00 0.00 1.40
639 796 3.458118 CCCTGTACTCCATCCACCATTAA 59.542 47.826 0.00 0.00 0.00 1.40
640 797 3.045634 CCCTGTACTCCATCCACCATTA 58.954 50.000 0.00 0.00 0.00 1.90
641 798 1.846439 CCCTGTACTCCATCCACCATT 59.154 52.381 0.00 0.00 0.00 3.16
642 799 1.511613 CCCTGTACTCCATCCACCAT 58.488 55.000 0.00 0.00 0.00 3.55
643 800 0.620410 CCCCTGTACTCCATCCACCA 60.620 60.000 0.00 0.00 0.00 4.17
644 801 0.326238 TCCCCTGTACTCCATCCACC 60.326 60.000 0.00 0.00 0.00 4.61
645 802 1.123928 CTCCCCTGTACTCCATCCAC 58.876 60.000 0.00 0.00 0.00 4.02
646 803 1.015609 TCTCCCCTGTACTCCATCCA 58.984 55.000 0.00 0.00 0.00 3.41
647 804 1.218196 TCTCTCCCCTGTACTCCATCC 59.782 57.143 0.00 0.00 0.00 3.51
648 805 2.757894 TCTCTCCCCTGTACTCCATC 57.242 55.000 0.00 0.00 0.00 3.51
649 806 3.715648 AATCTCTCCCCTGTACTCCAT 57.284 47.619 0.00 0.00 0.00 3.41
650 807 3.271225 TGTAATCTCTCCCCTGTACTCCA 59.729 47.826 0.00 0.00 0.00 3.86
651 808 3.912248 TGTAATCTCTCCCCTGTACTCC 58.088 50.000 0.00 0.00 0.00 3.85
652 809 4.957327 AGTTGTAATCTCTCCCCTGTACTC 59.043 45.833 0.00 0.00 0.00 2.59
653 810 4.949121 AGTTGTAATCTCTCCCCTGTACT 58.051 43.478 0.00 0.00 0.00 2.73
654 811 5.420409 CAAGTTGTAATCTCTCCCCTGTAC 58.580 45.833 0.00 0.00 0.00 2.90
655 812 4.469945 CCAAGTTGTAATCTCTCCCCTGTA 59.530 45.833 1.45 0.00 0.00 2.74
656 813 3.264450 CCAAGTTGTAATCTCTCCCCTGT 59.736 47.826 1.45 0.00 0.00 4.00
657 814 3.370953 CCCAAGTTGTAATCTCTCCCCTG 60.371 52.174 1.45 0.00 0.00 4.45
658 815 2.846827 CCCAAGTTGTAATCTCTCCCCT 59.153 50.000 1.45 0.00 0.00 4.79
659 816 2.092375 CCCCAAGTTGTAATCTCTCCCC 60.092 54.545 1.45 0.00 0.00 4.81
660 817 2.844348 TCCCCAAGTTGTAATCTCTCCC 59.156 50.000 1.45 0.00 0.00 4.30
661 818 4.225267 TCTTCCCCAAGTTGTAATCTCTCC 59.775 45.833 1.45 0.00 0.00 3.71
662 819 5.422214 TCTTCCCCAAGTTGTAATCTCTC 57.578 43.478 1.45 0.00 0.00 3.20
663 820 5.548056 TCTTCTTCCCCAAGTTGTAATCTCT 59.452 40.000 1.45 0.00 0.00 3.10
664 821 5.805728 TCTTCTTCCCCAAGTTGTAATCTC 58.194 41.667 1.45 0.00 0.00 2.75
665 822 5.843019 TCTTCTTCCCCAAGTTGTAATCT 57.157 39.130 1.45 0.00 0.00 2.40
666 823 5.106118 GCTTCTTCTTCCCCAAGTTGTAATC 60.106 44.000 1.45 0.00 0.00 1.75
667 824 4.767409 GCTTCTTCTTCCCCAAGTTGTAAT 59.233 41.667 1.45 0.00 0.00 1.89
668 825 4.142038 GCTTCTTCTTCCCCAAGTTGTAA 58.858 43.478 1.45 0.00 0.00 2.41
669 826 3.137544 TGCTTCTTCTTCCCCAAGTTGTA 59.862 43.478 1.45 0.00 0.00 2.41
670 827 2.091885 TGCTTCTTCTTCCCCAAGTTGT 60.092 45.455 1.45 0.00 0.00 3.32
671 828 2.555757 CTGCTTCTTCTTCCCCAAGTTG 59.444 50.000 0.00 0.00 0.00 3.16
672 829 2.868899 CTGCTTCTTCTTCCCCAAGTT 58.131 47.619 0.00 0.00 0.00 2.66
673 830 1.546548 GCTGCTTCTTCTTCCCCAAGT 60.547 52.381 0.00 0.00 0.00 3.16
674 831 1.172175 GCTGCTTCTTCTTCCCCAAG 58.828 55.000 0.00 0.00 0.00 3.61
675 832 0.773644 AGCTGCTTCTTCTTCCCCAA 59.226 50.000 0.00 0.00 0.00 4.12
676 833 1.656587 TAGCTGCTTCTTCTTCCCCA 58.343 50.000 7.79 0.00 0.00 4.96
677 834 2.237392 TCTTAGCTGCTTCTTCTTCCCC 59.763 50.000 7.79 0.00 0.00 4.81
678 835 3.618690 TCTTAGCTGCTTCTTCTTCCC 57.381 47.619 7.79 0.00 0.00 3.97
679 836 4.826556 TCTTCTTAGCTGCTTCTTCTTCC 58.173 43.478 7.79 0.00 0.00 3.46
680 837 6.793492 TTTCTTCTTAGCTGCTTCTTCTTC 57.207 37.500 7.79 0.00 0.00 2.87
681 838 6.150809 CCATTTCTTCTTAGCTGCTTCTTCTT 59.849 38.462 7.79 0.00 0.00 2.52
682 839 5.647225 CCATTTCTTCTTAGCTGCTTCTTCT 59.353 40.000 7.79 0.00 0.00 2.85
683 840 5.645497 TCCATTTCTTCTTAGCTGCTTCTTC 59.355 40.000 7.79 0.00 0.00 2.87
684 841 5.564550 TCCATTTCTTCTTAGCTGCTTCTT 58.435 37.500 7.79 0.00 0.00 2.52
685 842 5.046014 TCTCCATTTCTTCTTAGCTGCTTCT 60.046 40.000 7.79 0.00 0.00 2.85
686 843 5.181748 TCTCCATTTCTTCTTAGCTGCTTC 58.818 41.667 7.79 0.00 0.00 3.86
687 844 5.171339 TCTCCATTTCTTCTTAGCTGCTT 57.829 39.130 7.79 0.00 0.00 3.91
688 845 4.833478 TCTCCATTTCTTCTTAGCTGCT 57.167 40.909 7.57 7.57 0.00 4.24
689 846 6.051717 TGTATCTCCATTTCTTCTTAGCTGC 58.948 40.000 0.00 0.00 0.00 5.25
690 847 7.254727 GCTTGTATCTCCATTTCTTCTTAGCTG 60.255 40.741 0.00 0.00 0.00 4.24
691 848 6.765512 GCTTGTATCTCCATTTCTTCTTAGCT 59.234 38.462 0.00 0.00 0.00 3.32
692 849 6.017523 GGCTTGTATCTCCATTTCTTCTTAGC 60.018 42.308 0.00 0.00 0.00 3.09
693 850 6.201806 CGGCTTGTATCTCCATTTCTTCTTAG 59.798 42.308 0.00 0.00 0.00 2.18
694 851 6.049149 CGGCTTGTATCTCCATTTCTTCTTA 58.951 40.000 0.00 0.00 0.00 2.10
695 852 4.878397 CGGCTTGTATCTCCATTTCTTCTT 59.122 41.667 0.00 0.00 0.00 2.52
696 853 4.446371 CGGCTTGTATCTCCATTTCTTCT 58.554 43.478 0.00 0.00 0.00 2.85
697 854 3.002759 GCGGCTTGTATCTCCATTTCTTC 59.997 47.826 0.00 0.00 0.00 2.87
698 855 2.945668 GCGGCTTGTATCTCCATTTCTT 59.054 45.455 0.00 0.00 0.00 2.52
699 856 2.565841 GCGGCTTGTATCTCCATTTCT 58.434 47.619 0.00 0.00 0.00 2.52
700 857 1.604278 GGCGGCTTGTATCTCCATTTC 59.396 52.381 0.00 0.00 0.00 2.17
701 858 1.680338 GGCGGCTTGTATCTCCATTT 58.320 50.000 0.00 0.00 0.00 2.32
702 859 0.532862 CGGCGGCTTGTATCTCCATT 60.533 55.000 7.61 0.00 0.00 3.16
703 860 1.069765 CGGCGGCTTGTATCTCCAT 59.930 57.895 7.61 0.00 0.00 3.41
704 861 2.499205 CGGCGGCTTGTATCTCCA 59.501 61.111 7.61 0.00 0.00 3.86
705 862 2.967615 GCGGCGGCTTGTATCTCC 60.968 66.667 9.78 0.00 35.83 3.71
706 863 2.967615 GGCGGCGGCTTGTATCTC 60.968 66.667 27.22 0.00 39.81 2.75
707 864 4.891727 CGGCGGCGGCTTGTATCT 62.892 66.667 30.65 0.00 39.81 1.98
709 866 4.770874 AACGGCGGCGGCTTGTAT 62.771 61.111 35.05 9.70 39.81 2.29
728 885 0.760945 CCCGGCTAGGATCAGGAACT 60.761 60.000 0.00 0.00 45.00 3.01
729 886 0.759436 TCCCGGCTAGGATCAGGAAC 60.759 60.000 0.00 0.00 45.00 3.62
730 887 0.191064 ATCCCGGCTAGGATCAGGAA 59.809 55.000 0.00 0.00 43.48 3.36
731 888 0.542938 CATCCCGGCTAGGATCAGGA 60.543 60.000 0.00 0.00 45.21 3.86
732 889 1.548357 CCATCCCGGCTAGGATCAGG 61.548 65.000 0.00 2.26 45.21 3.86
733 890 1.978473 CCATCCCGGCTAGGATCAG 59.022 63.158 0.00 0.00 45.21 2.90
734 891 4.215370 CCATCCCGGCTAGGATCA 57.785 61.111 0.00 0.00 45.21 2.92
743 900 4.473520 AACGAGCAGCCATCCCGG 62.474 66.667 0.00 0.00 38.11 5.73
744 901 2.892425 GAACGAGCAGCCATCCCG 60.892 66.667 0.00 0.00 0.00 5.14
745 902 1.817099 CAGAACGAGCAGCCATCCC 60.817 63.158 0.00 0.00 0.00 3.85
746 903 0.674895 AACAGAACGAGCAGCCATCC 60.675 55.000 0.00 0.00 0.00 3.51
747 904 2.010145 TAACAGAACGAGCAGCCATC 57.990 50.000 0.00 0.00 0.00 3.51
748 905 2.555199 GATAACAGAACGAGCAGCCAT 58.445 47.619 0.00 0.00 0.00 4.40
749 906 1.405526 GGATAACAGAACGAGCAGCCA 60.406 52.381 0.00 0.00 0.00 4.75
750 907 1.291132 GGATAACAGAACGAGCAGCC 58.709 55.000 0.00 0.00 0.00 4.85
751 908 1.291132 GGGATAACAGAACGAGCAGC 58.709 55.000 0.00 0.00 0.00 5.25
752 909 1.135083 ACGGGATAACAGAACGAGCAG 60.135 52.381 0.00 0.00 0.00 4.24
753 910 0.892755 ACGGGATAACAGAACGAGCA 59.107 50.000 0.00 0.00 0.00 4.26
754 911 1.278238 CACGGGATAACAGAACGAGC 58.722 55.000 0.00 0.00 0.00 5.03
755 912 2.649331 ACACGGGATAACAGAACGAG 57.351 50.000 0.00 0.00 0.00 4.18
756 913 3.084039 ACTACACGGGATAACAGAACGA 58.916 45.455 0.00 0.00 0.00 3.85
757 914 3.119743 TCACTACACGGGATAACAGAACG 60.120 47.826 0.00 0.00 0.00 3.95
758 915 4.445452 TCACTACACGGGATAACAGAAC 57.555 45.455 0.00 0.00 0.00 3.01
759 916 4.619863 GCTTCACTACACGGGATAACAGAA 60.620 45.833 0.00 0.00 0.00 3.02
760 917 3.119245 GCTTCACTACACGGGATAACAGA 60.119 47.826 0.00 0.00 0.00 3.41
761 918 3.187700 GCTTCACTACACGGGATAACAG 58.812 50.000 0.00 0.00 0.00 3.16
762 919 2.563620 TGCTTCACTACACGGGATAACA 59.436 45.455 0.00 0.00 0.00 2.41
763 920 3.241067 TGCTTCACTACACGGGATAAC 57.759 47.619 0.00 0.00 0.00 1.89
764 921 3.431626 CCATGCTTCACTACACGGGATAA 60.432 47.826 0.00 0.00 0.00 1.75
765 922 2.102420 CCATGCTTCACTACACGGGATA 59.898 50.000 0.00 0.00 0.00 2.59
766 923 1.134401 CCATGCTTCACTACACGGGAT 60.134 52.381 0.00 0.00 0.00 3.85
767 924 0.249120 CCATGCTTCACTACACGGGA 59.751 55.000 0.00 0.00 0.00 5.14
768 925 0.036388 ACCATGCTTCACTACACGGG 60.036 55.000 0.00 0.00 0.00 5.28
769 926 1.078709 CACCATGCTTCACTACACGG 58.921 55.000 0.00 0.00 0.00 4.94
770 927 1.078709 CCACCATGCTTCACTACACG 58.921 55.000 0.00 0.00 0.00 4.49
771 928 1.453155 CCCACCATGCTTCACTACAC 58.547 55.000 0.00 0.00 0.00 2.90
772 929 0.322456 GCCCACCATGCTTCACTACA 60.322 55.000 0.00 0.00 0.00 2.74
773 930 0.035056 AGCCCACCATGCTTCACTAC 60.035 55.000 0.00 0.00 34.87 2.73
774 931 0.035152 CAGCCCACCATGCTTCACTA 60.035 55.000 0.00 0.00 36.81 2.74
775 932 1.303888 CAGCCCACCATGCTTCACT 60.304 57.895 0.00 0.00 36.81 3.41
776 933 2.345760 CCAGCCCACCATGCTTCAC 61.346 63.158 0.00 0.00 36.81 3.18
777 934 2.036098 CCAGCCCACCATGCTTCA 59.964 61.111 0.00 0.00 36.81 3.02
778 935 2.757099 CCCAGCCCACCATGCTTC 60.757 66.667 0.00 0.00 36.81 3.86
782 939 2.284112 AAAGCCCAGCCCACCATG 60.284 61.111 0.00 0.00 0.00 3.66
783 940 2.037847 GAAAGCCCAGCCCACCAT 59.962 61.111 0.00 0.00 0.00 3.55
784 941 2.786512 GATGAAAGCCCAGCCCACCA 62.787 60.000 0.00 0.00 0.00 4.17
785 942 2.037847 ATGAAAGCCCAGCCCACC 59.962 61.111 0.00 0.00 0.00 4.61
786 943 0.255890 TAGATGAAAGCCCAGCCCAC 59.744 55.000 0.00 0.00 0.00 4.61
787 944 1.143684 GATAGATGAAAGCCCAGCCCA 59.856 52.381 0.00 0.00 0.00 5.36
788 945 1.879796 CGATAGATGAAAGCCCAGCCC 60.880 57.143 0.00 0.00 39.76 5.19
789 946 1.517242 CGATAGATGAAAGCCCAGCC 58.483 55.000 0.00 0.00 39.76 4.85
790 947 0.871057 GCGATAGATGAAAGCCCAGC 59.129 55.000 0.00 0.00 39.76 4.85
791 948 2.540265 AGCGATAGATGAAAGCCCAG 57.460 50.000 0.00 0.00 39.76 4.45
801 958 1.115930 ACGAAGGCCCAGCGATAGAT 61.116 55.000 15.29 0.00 39.76 1.98
802 959 1.735376 GACGAAGGCCCAGCGATAGA 61.735 60.000 15.29 0.00 39.76 1.98
803 960 1.300233 GACGAAGGCCCAGCGATAG 60.300 63.158 15.29 0.00 0.00 2.08
804 961 1.756950 AGACGAAGGCCCAGCGATA 60.757 57.895 15.29 0.00 0.00 2.92
805 962 3.077556 AGACGAAGGCCCAGCGAT 61.078 61.111 15.29 2.18 0.00 4.58
806 963 4.069232 CAGACGAAGGCCCAGCGA 62.069 66.667 15.29 0.00 0.00 4.93
807 964 4.379243 ACAGACGAAGGCCCAGCG 62.379 66.667 0.00 3.02 0.00 5.18
808 965 2.435059 GACAGACGAAGGCCCAGC 60.435 66.667 0.00 0.00 0.00 4.85
809 966 2.125912 CGACAGACGAAGGCCCAG 60.126 66.667 0.00 0.00 45.77 4.45
810 967 4.373116 GCGACAGACGAAGGCCCA 62.373 66.667 0.00 0.00 45.77 5.36
811 968 4.070552 AGCGACAGACGAAGGCCC 62.071 66.667 0.00 0.00 45.77 5.80
812 969 2.811317 CAGCGACAGACGAAGGCC 60.811 66.667 0.00 0.00 45.77 5.19
813 970 2.811317 CCAGCGACAGACGAAGGC 60.811 66.667 0.00 0.00 45.77 4.35
814 971 2.125912 CCCAGCGACAGACGAAGG 60.126 66.667 0.00 0.00 45.77 3.46
815 972 2.811317 GCCCAGCGACAGACGAAG 60.811 66.667 0.00 0.00 45.77 3.79
816 973 4.373116 GGCCCAGCGACAGACGAA 62.373 66.667 0.00 0.00 45.77 3.85
827 984 2.216750 CTTTCCATTGTGCGGCCCAG 62.217 60.000 0.00 0.00 0.00 4.45
828 985 2.203552 TTTCCATTGTGCGGCCCA 60.204 55.556 0.00 0.00 0.00 5.36
829 986 2.573340 CTTTCCATTGTGCGGCCC 59.427 61.111 0.00 0.00 0.00 5.80
830 987 2.573340 CCTTTCCATTGTGCGGCC 59.427 61.111 0.00 0.00 0.00 6.13
831 988 2.212900 GACCCTTTCCATTGTGCGGC 62.213 60.000 0.00 0.00 0.00 6.53
832 989 1.883021 GACCCTTTCCATTGTGCGG 59.117 57.895 0.00 0.00 0.00 5.69
833 990 1.501741 CGACCCTTTCCATTGTGCG 59.498 57.895 0.00 0.00 0.00 5.34
834 991 1.212751 GCGACCCTTTCCATTGTGC 59.787 57.895 0.00 0.00 0.00 4.57
835 992 2.107950 TAGCGACCCTTTCCATTGTG 57.892 50.000 0.00 0.00 0.00 3.33
836 993 2.224670 TGTTAGCGACCCTTTCCATTGT 60.225 45.455 0.00 0.00 0.00 2.71
837 994 2.432444 TGTTAGCGACCCTTTCCATTG 58.568 47.619 0.00 0.00 0.00 2.82
838 995 2.871096 TGTTAGCGACCCTTTCCATT 57.129 45.000 0.00 0.00 0.00 3.16
839 996 2.871096 TTGTTAGCGACCCTTTCCAT 57.129 45.000 0.00 0.00 0.00 3.41
840 997 2.642154 TTTGTTAGCGACCCTTTCCA 57.358 45.000 0.00 0.00 0.00 3.53
841 998 4.482386 GAATTTTGTTAGCGACCCTTTCC 58.518 43.478 0.00 0.00 0.00 3.13
842 999 4.482386 GGAATTTTGTTAGCGACCCTTTC 58.518 43.478 0.00 0.00 0.00 2.62
843 1000 3.257375 GGGAATTTTGTTAGCGACCCTTT 59.743 43.478 0.00 0.00 33.99 3.11
844 1001 2.823747 GGGAATTTTGTTAGCGACCCTT 59.176 45.455 0.00 0.00 33.99 3.95
845 1002 2.443416 GGGAATTTTGTTAGCGACCCT 58.557 47.619 0.00 0.00 33.99 4.34
846 1003 1.475280 GGGGAATTTTGTTAGCGACCC 59.525 52.381 0.00 0.00 35.80 4.46
847 1004 2.422479 GAGGGGAATTTTGTTAGCGACC 59.578 50.000 0.00 0.00 0.00 4.79
848 1005 2.422479 GGAGGGGAATTTTGTTAGCGAC 59.578 50.000 0.00 0.00 0.00 5.19
849 1006 2.040545 TGGAGGGGAATTTTGTTAGCGA 59.959 45.455 0.00 0.00 0.00 4.93
850 1007 2.423538 CTGGAGGGGAATTTTGTTAGCG 59.576 50.000 0.00 0.00 0.00 4.26
851 1008 3.697166 TCTGGAGGGGAATTTTGTTAGC 58.303 45.455 0.00 0.00 0.00 3.09
852 1009 4.158579 GCTTCTGGAGGGGAATTTTGTTAG 59.841 45.833 0.00 0.00 0.00 2.34
853 1010 4.086457 GCTTCTGGAGGGGAATTTTGTTA 58.914 43.478 0.00 0.00 0.00 2.41
854 1011 2.899900 GCTTCTGGAGGGGAATTTTGTT 59.100 45.455 0.00 0.00 0.00 2.83
855 1012 2.158325 TGCTTCTGGAGGGGAATTTTGT 60.158 45.455 0.00 0.00 0.00 2.83
856 1013 2.494870 CTGCTTCTGGAGGGGAATTTTG 59.505 50.000 0.00 0.00 0.00 2.44
857 1014 2.812658 CTGCTTCTGGAGGGGAATTTT 58.187 47.619 0.00 0.00 0.00 1.82
858 1015 1.618074 GCTGCTTCTGGAGGGGAATTT 60.618 52.381 0.00 0.00 31.89 1.82
859 1016 0.033699 GCTGCTTCTGGAGGGGAATT 60.034 55.000 0.00 0.00 31.89 2.17
860 1017 1.611965 GCTGCTTCTGGAGGGGAAT 59.388 57.895 0.00 0.00 31.89 3.01
861 1018 2.959484 CGCTGCTTCTGGAGGGGAA 61.959 63.158 0.00 0.00 40.07 3.97
862 1019 3.393970 CGCTGCTTCTGGAGGGGA 61.394 66.667 0.00 0.00 40.07 4.81
863 1020 2.959484 TTCGCTGCTTCTGGAGGGG 61.959 63.158 0.00 0.00 43.04 4.79
864 1021 1.743252 GTTCGCTGCTTCTGGAGGG 60.743 63.158 0.00 0.00 43.91 4.30
865 1022 1.004560 TGTTCGCTGCTTCTGGAGG 60.005 57.895 0.00 0.00 31.89 4.30
866 1023 0.037882 TCTGTTCGCTGCTTCTGGAG 60.038 55.000 0.00 0.00 34.56 3.86
910 1067 3.250617 AGGTGGAAAATTGCCCAAAGAT 58.749 40.909 1.09 0.00 33.69 2.40
913 1070 3.434310 GGAAAGGTGGAAAATTGCCCAAA 60.434 43.478 1.09 0.00 33.69 3.28
1005 1171 0.528017 TCTTGCTGCAGTACCTCTCG 59.472 55.000 16.64 0.00 0.00 4.04
1013 1179 1.103398 AACCGCTTTCTTGCTGCAGT 61.103 50.000 16.64 0.00 0.00 4.40
1031 1197 3.113514 TTCTCGCCACCAGCCACAA 62.114 57.895 0.00 0.00 38.78 3.33
1048 1214 2.033194 GGAGCGTGCTTAAGCGGTT 61.033 57.895 21.97 14.26 45.83 4.44
1085 1251 2.604174 GGCAGGAACGACAACACCG 61.604 63.158 0.00 0.00 0.00 4.94
1158 1324 2.061220 TGGCACAGACTTCCAGAGG 58.939 57.895 0.00 0.00 0.00 3.69
1221 1397 1.719246 TCGATGAAACGCTTCAAGTCG 59.281 47.619 15.09 15.09 44.64 4.18
1225 1401 1.130373 GCCATCGATGAAACGCTTCAA 59.870 47.619 26.86 0.00 44.64 2.69
1380 1556 3.206150 GCCAGCTAGGATTTTGAATCGA 58.794 45.455 6.40 0.00 41.22 3.59
1386 1562 2.658285 TCATGGCCAGCTAGGATTTTG 58.342 47.619 13.05 0.00 41.22 2.44
1387 1563 3.494332 GATCATGGCCAGCTAGGATTTT 58.506 45.455 13.05 0.00 41.22 1.82
1440 1616 4.750098 AGAACTAATGTTGTCAAGTGGTCG 59.250 41.667 0.00 0.00 36.39 4.79
1443 1619 5.236478 ACGAAGAACTAATGTTGTCAAGTGG 59.764 40.000 0.00 0.00 36.39 4.00
1459 1635 3.114065 AGAACTCGACACAACGAAGAAC 58.886 45.455 0.00 0.00 41.67 3.01
1479 1655 6.127758 CCGACATATCCAGAGAGAAATCCTAG 60.128 46.154 0.00 0.00 0.00 3.02
1480 1656 5.712446 CCGACATATCCAGAGAGAAATCCTA 59.288 44.000 0.00 0.00 0.00 2.94
1498 1674 1.188219 AGTGACTGACAGCCCGACAT 61.188 55.000 1.25 0.00 0.00 3.06
1554 1730 2.290450 GGATTTTGGTAAGACGGTCCCA 60.290 50.000 4.14 2.41 0.00 4.37
1560 1736 8.512138 AGATGTTTTAAGGATTTTGGTAAGACG 58.488 33.333 0.00 0.00 0.00 4.18
1625 1801 2.531206 CTAGCGCAGAAGTAAGACACC 58.469 52.381 11.47 0.00 0.00 4.16
1670 1846 1.021390 CGGAGTCCAACCATGACAGC 61.021 60.000 10.49 0.00 35.15 4.40
1738 1914 6.869913 CACAAGAACCCTTTAAGACATACGTA 59.130 38.462 0.00 0.00 0.00 3.57
1739 1915 5.699458 CACAAGAACCCTTTAAGACATACGT 59.301 40.000 0.00 0.00 0.00 3.57
1740 1916 5.121768 CCACAAGAACCCTTTAAGACATACG 59.878 44.000 0.00 0.00 0.00 3.06
1741 1917 6.148976 GTCCACAAGAACCCTTTAAGACATAC 59.851 42.308 0.00 0.00 0.00 2.39
1766 1942 5.253330 ACCACAGTACCCATTGAAACTATG 58.747 41.667 0.00 0.00 0.00 2.23
1843 2023 1.082117 AATTCGTAGCGCCCGACAAG 61.082 55.000 18.00 0.00 33.41 3.16
1895 2075 1.967319 TCAACTGGAAAGGAGTGCAC 58.033 50.000 9.40 9.40 0.00 4.57
1903 2083 2.744202 AGCAAGCGTATCAACTGGAAAG 59.256 45.455 0.00 0.00 0.00 2.62
1970 2153 8.316640 AGCTCTAACTTCAAGTGTAAGATTTG 57.683 34.615 0.00 0.00 0.00 2.32
2003 2186 4.833390 ACGAGAGGTGAAGAATTAAAGGG 58.167 43.478 0.00 0.00 0.00 3.95
2056 2239 3.857157 TTAGCCTGCTAAACATAGGGG 57.143 47.619 9.07 0.00 35.80 4.79
2117 2300 6.205658 GCTTGAGAAAGAAAACTAGTCCACAT 59.794 38.462 0.00 0.00 0.00 3.21
2118 2301 5.527582 GCTTGAGAAAGAAAACTAGTCCACA 59.472 40.000 0.00 0.00 0.00 4.17
2119 2302 5.527582 TGCTTGAGAAAGAAAACTAGTCCAC 59.472 40.000 0.00 0.00 0.00 4.02
2151 2334 4.020485 TGTTCAAGGGTAAGCCTCTAGAAC 60.020 45.833 1.01 1.01 35.26 3.01
2203 2388 6.989169 ACAAGGCATCATACATAGAAGAAGAC 59.011 38.462 0.00 0.00 0.00 3.01
2330 2529 5.521735 CCTCGAGATGTTTTGATACCAAGAG 59.478 44.000 15.71 0.00 33.23 2.85
2351 2550 3.624861 ACATGATTGATTTCGACTGCCTC 59.375 43.478 0.00 0.00 0.00 4.70
2379 2578 9.627123 TCAATAATAGGTGAATCCTTTTACCAG 57.373 33.333 0.00 0.00 45.67 4.00
2445 2824 6.043938 ACTGAAATAAGTTAGGTGGTCTTCCA 59.956 38.462 0.00 0.00 42.05 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.