>input_sequence_78774
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---------------------------------------------ATGGCCGAGAGGTACTGCAGCAAGAAAGCGGTTGT
GGCTGGTGGCGAGAACCGCTTAAGCACGCTCCCAGAAGATGTGATCCAGCCGGTGTTGTCGTTCCTGCCCTCGCGTCGAG
CCGCGCAGACGTGCGCGCTCGCCACCCGCTGGCGCACCCTCTGCCTCTGGAAGTCTGTGCCATCTCTTCGC--------A
TCGATGCCGATGATGAGGCC--TACCGGTGTTGCCACGACTTGAAGCGTTTCATCGATGGCTTCCTTCGCTGCCGTGACC
CAACACCTCTGCACGAATGTGAGATCCTTTTTGACGATGATCGGGGCTCGGAGCAGTTTCACCCAGACTTTGAGCTGTGG
CTCTATTATGCTGTGTCACACAAAGTGAGGGTTCTTCGATTCAAAATCCTAGCTGGCCATGATCCTTTGCAGCTATCTGC
CGGGGCTCTCATCTCCGACCACTTGACAACATTAGTTCTTCGTTGTGTCGAGTTCTAG----------------------
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>chr5B_1_TraesCS5B01G348000
TCCCCAGTCTTTCCTGGCCGCCAGGCACTACAAACCGCCATCCATTCCACCGGCGGGCGGCGGCCGGCGCGGGGGTGGTG
CCTTGGAGAGGTTCTCTCC----TCGGGTCCCTTCACGGCTAGCTTAGGAGGTACCTACTTCCTCCGTAAAGAAATATAA
GAATGTT--TAGATCACTAAAATAATGATGTAATACAGAAGGAGTACGTGCCATGACCCGCTGAGCAGTCTGGATGTTGC
TCACCTGCACGGCTGCCCCTGCTCCATGCTCATCAACTATAGCCAGTTCTCGTGAAAGGAACAAGGAGAGGGAAGGTACT
GCTTGCCTCCGTTTTATTCCTAGTTAGCGCAGCACATTAAGGCGTGGATGTTTGTTCTTCAGTTTTCACCAGCTTATATA
GAAGGATGTCTAGGGCTGGGGAATGAGTTCTGT-CCAAGTGAATT---CTACACTTCAGGTCAGTTTGATGGCTTT----
-CATGTATTTATT----TTTGTGCTCTCTGGCATTTGCCAAATTTCTGGGCATTTTTTGACAAGCCACATTCCAATGTTT
GTCAACTGACGCATACCATTCTACC-------------------------------------------------------
------------------------------------------------------------------------------TG
TGATGTACA----TTTCTTTTTTGAAGGTGTCACATACTAAGAAATTTGTTAGCTACCCTCTAGATATCTATGGATTAAT
GGTGGATGGAGTACAGGGGAGAGATTACAACTTGGGGAAGAAGAAGCAGCTAAGAAGAAATGGAGATACAAGCCGCCGCC
GTTCAGTTCCTGATCCTAGCCGGGATGGCTGCTCGTTCTGTTATCCCGTGTAGTGAAGCATGGTGGGCTGGGCTTTCATC
TATCGCTGGGCCTTCGTCTGTCGCTGGGCCGCACAATGGAAAGGGTCGCTAACAAAATTCCCCTCCAGAAGCAGCGAACA
GAGGCACCTAAGTTGGCGCGGGGCGAATCTTTGGGCAATTTTCCACCTTTCCTGCCTGGTTTGGCTGCTCATTTGGTGTC
CATCTCCTTGGCAGCTTCGC--------GCCACCTGTT-GACAGAATGGCCGAGAGGTACTGCAGCAAGAAAGCGGTTGT
GGCTGGTGGCGAGAACCGCTTAAGCACGCTCCCAGAAGATGTGATCCAGCCGGTGTTGTCGTTCCTGCCCTCGCGTCGAG
CCGCGCAGACGTGCGCGCTCGCCACCCGCTGGCGCACCCTCTGCCTCTGGAAGTCTGTGCCATCTCTTCGC--------A
TCGATGCCGATGATGAGGCC--TACCGGTGTTGCCACGACTTGAAGCGTTTCATCGATGGCTTCCTTCGCTGCCGTGACC
CAACACCTCTGCACGAATGTGAGATCCTTTTTGACGATGATCGGGGCTCGGAGCAGTTTCACCCAGACTTTGAGCTGTGG
CTCTATTATGCTGTGTCACACAAAGTGAGGGTTCTTCGATTCAAAATCCTAGCTGGCCATGATCCTTTGCAGCTATCTGC
CGGGGCTCTCATCTCCGACCACTTGACAACATTAGTTCTTCGTTGTGTCGAGTTCTAGGATTTCTCTCTGGATATGTCGG
GCTGTCAGTCACTTGAGGTGCTGGAGATGCACGAGTGTGTAATCAACATTGGGACCGTCTTACCAAAATCCTTAAAACAT
CTGACAATCAGAGATACAAGTTTTGGCTCTCAGGATTCCCGGTGTCTTACTTCTGCGCTAGGTCTGGTTACCTTGGAAGT
TGCTGGCTGTCATGGTTGGACTCCGTTGTTTAAGAGCTTGCCATCACTAGTAGCGGCATTTATAAACACCAGATACGTAT
GTCTTAAAGGGTTCTTGTGGACATAGTTTCAATGG----GTACTGTGGTCATGAGCTATGTGTGGTGTGCCATGGTAGAG
CTGATTTTGTGTTTCTTGAAGGCTTGTCGGGCGCTACGAATTTAGAGTTGACAGCTGAATACTTTATGGTATGCGTGCAC
TCCTTTCCAGTTG---ATACGCTTGCTGTTTTGCTAATGCCGTTTGTTGTTTTCTGTTCACCTTGGTATTATCAAATCTT
ACACTTGAAGTTAGAGCTTCAATTGCCCTTTAATTCTTCACCTCTCGTCTAGATTTTCAGAACAGATATAGAATGGTGCC
CCTATGTTTAGCAGGCTAAAAACATTGTTGCTCAGTGACTGGTGTATGGCTAATTACTTATGTGGACTAGTTTTCTTTCT
CAAGCACTCACCGGTTCTAGAG--GCTTACCCTTGAACACTGTACTTTATCTAAGGTATGATTTTTTG---------TCT
TCTTCTATGTATGAT----GCCTTGTCTTTGAAATTGCCACGTGCTGCTGATTCATTTCAGTCAACTATTTTGCTTGCAA
CAGCAATGGTATGGTAA-ACGACTGAAACCTGCAAGCCAAAGGACAAACTCTTGGTATCAAAACATCTCGAGGCAGTCGA
AATCAATCATGTGAAAGCTGGTAAAAGGATTCACCTATTATTGAAGGTCCTTGCTTTCCAT-------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
GGTGAGGTTAG-AATG--AAAAATGGAAGACCACCTAACTTATTTCAGTGAAAATGTTGTC
>chr5D_1
TCCCCAGTC-TTCCTGGCCGCCAGGCACGACAAACCGCCGTCCATTCCCC-------CGGCGGCCGGCGCGGGGGTGGTG
CCTTGGAGAGGTTCTCGCCTCGATCGTGTCCCTTCACGGCTCGCTTAGGAAGTACT---TTCCTCTGTAAAGAAATATAA
GAGCATTTATAGATCACTAAAATAATGATCTAATACGGAAGAAGTACGTGCCATGACCCGC--------CTGGATGTTCC
TCACCTGCACGGCTGCCCCTGCTC-ATGCTCATCAACTATAGTCAGGTGTCGTGAAAGGAACTAGGAGAGGAAAGGTACT
GCTTGTCTCCGTTTTGTT-CTAGTTAGTGCAGCACA-TAAGTCGTGGATGTTTGTTCTTCAGTTTTCACCAGTTTATATA
CAAGGATGTCTAGGGCTGGGGAATGAATTCTGTC--AAGTGAATTCTACTACACTTCAGGTCAGTTTGATGGCTTT----
-CTTGTATTTATTTAGATTTGTGCTCTCAGGCATTTGTCAGATTTCTGGGCATC-TTTGACAAGCCACATTCCAATGTTT
GTCAACTGCTGCATACCATTCTACTCCCTCCGTTCCGAAATAGATGACTCAATTTTGTACAAAGTTAGTACAAAGTTGCG
AAATAGATGACTCAATTTTGTATAAAGTTAGTACAAAGTTGAGTCATCTATTTTGAAACGGAGGGAGTACCTGTGAATTG
TGATGTACA----TTTCTTTTTTGAAGGTGCCACATACTAAGAAATTCTGT-----------------------------
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---------------------------------------------------------------TCCAGAAGCAGCGAATA
GAGGCACCTAAGTTGACGCGGGGCGAGTC--TGAGCAAATTTCCACCTTTCCTGCCTGGTTTGGCTGCTCATTTGGTGTC
CATCTCCTTGGCAGCTTCGCCGCGGGACGCCACCTGTT-GACAGAATGGCTGAGAGGTTCGGCAGCAAGAAAGCGGCTGT
GGCTGGTGGCGAGGACCGCTTGAGCACGCTCCCAGAAGATGTGATCCGGCTGGTGTTGTCGTTCCTGCCCTCGCGTCAAG
CCATGCAGACGTGCGTGCTCGCCACCCGCTGGCGCACCCTCTG------GAAGTCTGTGCCGTCTCTTGGC--------G
TCGATGCCGATGATGAGGCCTATACCGGTGTTGCCAGGACCTGAAGTGTTTCATCGATAGCTTCCTTCGCTGCCGTGACC
CAACACCTCTGCACGAATGTGAGATCCTTTTTGACGACGATCGGGGCTCGGAGCAGTTTCACCAAGACTTTGAGCTGTGG
CTCTGTTATGCTGTGTCACACAAAGTGAGGGTTCTCCGATTTGAAATCCTAGCTGGCCGTGATCCGTTGCAGCTATCTGC
CGGGGCTCTCGTCTCGGAGCACTTGACAACATTAATTCTTCGTTGTGTAGAGTCTGAGGATTTCTCTCTGGATGTGTCGG
GCTGTCAGTCACTTGAGGTGCTGGAGATGCACGAGTGTGTAATCAACATCGGGACTGTCTTACCAAAATCCTTAAAACAT
CTGACAATCAGAGAT---------------------TCCCCGTGCCTTACTTCTGCGCCAGGTCTGGTTACCTTGGAAGT
TGCTGACTGTCATGGTTGGACTCCGTTGTTTAAGAGCTTGCCATCACTAGTAGCGGCATTTATAAACACGAGA----TAT
GTCTTAAAGGGTTCTTGTGGAAATAGTCTCAATGGGTACGTACTGTGGTCATGAGCTATGTGTGGTATGCCATGGTAGAG
CTGATTTTGTGTTTCTTGAAGGTTTGTCGGGCGCTACGAATTTAGAGTTGACAGCTGAATACTTTATGGTATGCTTGCAC
TCTTTTCCAGTTG---ATACGTTTGCTGTTTTGCCAATGCCGTTTGTTGTTTTCTGTTCACCTTGGTATTATTCAATCTT
ACGCTTGAAGTGAGAGCTTCAATGGTCCTTTAATTCTTCACCTCTCGTCTAGATTTTCAGAACAGATATAGAATGGTG-C
CCTATGTTTAGCAGGCTAAAAACATTGTTGCTCAGTGACTGGTGTATGGCTCATTACTTCCATGGACTAGTTTTCTTTCT
CAAGCACTCACCGATTCTAGAGAGGCTTACCCTTGAACACTCTACTTTATCTAAGGTATGATTTTTCTTTA-------CT
TCTTCTATGTATGAT----GCCTTGTCTTTGAAATTGCCACGTACTGCTGATTCATTTCAGTCAATTATTTTGTTTGCAA
CAGCAATGGTATGGTGACACGACTGAAACCTGCAAGCCAAAGGACAAATTCTTGGTATCAAAACATCTCAAGGCAGTCGA
AATCAATCATGTGAAAGATGATAAAAGGATTCACCTATTATTGAAGGTCCTTGCTTTCCATGGAGTATATTCGGAACTAA
TAAACTTTAAAGAGAAGTATACTTCTTAACGTAAGTAACTATAACCACATTTTACTGTTATAATGTTTATGTAGTCTGCA
TGTATGACATTAGGAGATTTTTATTATTATTCCAGTCAATTAAATCACAAAATAATACTGAAATTTGGAAACAGCCATTT
GGTGAGGTTAG-AAATGAAAAACCGGAAGACCACCTAACTTATTTCAGTGAAGATGT----
>chr5A_316
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-CTTGTCGCCGTTTTATTCCTAGTTCGTGCAGCACATTAAGGCATGGATGTTTGCTCTTCACCAGTTTA-----TATATA
CAAGGATGTCTAGGGCTGGTGAATGAATTCTGTCCCAAGTGAATT---CCGCACTTCAGGTCAGTTTGATGGCTTTAATT
TCTTGTATTTATTTATGTTTGTGCTCTCAGGCATTTGTCAGATTTCTGGGCA-TTTCTGACAAGCCACATTCCAATGTTT
GTCAACTGCTGCATACCATTCTACC-------------------------------------------------------
------------------------------------------------------------------------------TC
TGATGTACACTTGTTTCTTTTTTCAAGGTGTCACATACTAAGAAATTCTCCTCCG-------------------------
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-------------------------------------------------------------------GAAGCAGCCAACA
GAGGCACCTAAGTCGACGCGGGGCGAGTCATCGGGCAATTTTCCACCTTCCCTGCCTCGTTTGGCTGCTCATTTGGTGTC
CATCTCATTGGCAGCTTCGC--------GCCACCTGTTCGACGGAATGGCAGAGAGGCTCTGCAGCAAGAAAGCGGCTGT
GGCTGCTGGCGAGGACCGCTTAAGCACGCTGCCGGAAGATGTGATCCATCTCGTGCTGTCGCTCCTGCCCTCGTGTCAAG
CCGTGCGGACGTGCGTGCTCGCCACCCGCTGGCGCACCCTCTG------GAAGTCCGTGCCGTCTCTTCGCGTGATCGCG
TCGATGCCGATGATGAGGCC--TACCGGTGTTGCCAGGACCTGAAGCGTTTCATCGATAGCTTTCTTCGCTGCCGTGACC
CAACACCTCTGCACGAATGTGAGATCCTTTTTGACGATGATCGGCGCTCGGAGGAGTTTCACCAAGACTTTGAGCTGTGG
CTCCGTTATGCCGTGCCTCACAAAGTGAGGGTTCTCCGATTTGAAATCCTAGCTGGTCATGATCCGTTGCAGCTATCTGC
CGGGGCTCTCATCTCGGAGCATTTGACAACATTAATTCTTTGTTGCGTCGAGTTTGAGGATTTCTCTCTGGATGTTTCCG
GCTGTCAGTCACTTGAGGTGCTGGAGATGCACGAGTGTGTAATCAACATCGGGACTGCCTTACCGAAATCCTTAAAGCAT
CTGACAATCAGAGATACAAGTTTTGGCTCTCAGGATTCCCCCTGTCTTACTTCTGCGCCAGGTCTGGTTACCTTGGAAGT
TGCTGACTGTCATGGTTGGACCCCGTTGTTTAAGAGCTTGCCATCACTAGTTGCGGCATTTATAAACACCGAA----TAT
GTCTTGAAGGGTTCTTCCGGAAATAGTTTCAATGG----GTACTGTGGTCATGAGCAATGTGTGGTGTGCCATGGTATAG
CTGATTTTGTGTTTCTTGAAGGTTTGTCGGGCGCTACGAATTTAGAGTTGACAGCTGAATACTTTATGGTATGCTCACAC
TCTTTTCCAGTTCATTATATGCTTGCTGTTTTGCTAATGCCGTTTGTTGTTTTCTGTTCACCTTGGTATTATTAAATCTT
ACACTTGAAGTTAGAGCTTCAATTGTCCTTTAATTCTTCAC--CTCGTCTAGATTTTCAGAACAGATATAGAATGGTG-C
CCTATGTTTAGCAGGCTAAAAACATTGTTGCTCAGTGACTGGTGTATGGCTCAGTACTTCCATGGACTAGTTTTCTTTCT
CAAGCACTCACCGATTCTAGAGAGGCTTACCCTTGAACACTGTACTTTATCTAAGGTATGAATTTTTTTCTTCTTCTTCT
TCTTCTATGTATGATAGATGCTTTGTCTTTGAAATTGCCACGTACTGCTGGTTCATTTCAGTCAACTATTTTGTTTGCAA
CAGCAATGGTATGATACCACGACTGAAACCTACAAGCCAAAGGACAAATTCTTGGTATCAAAGCATCTCAAGGCAGTCGA
AATCAATCATGTGAAAGGTGATAAAAGGATTCACCTATTATTGAAGGTCCTTGCTTTCCATGGAGTATATTCGGAACTAA
TAAACTTTAAAGAGAAGTATACTTCTTAACGTAAGTGACTATAACCACATTTTACTGTTACAATGTTTATGTAGTCTGCA
TGTATGACATTA-----------TTATTTTTCCAGTCAATTAAATCACAAAATAAAACTGAAA-TTGGAAACAACCATTG
GGTGAGGTTAGAAATG--AAAAACGGAAGACCACCTAACTTATTTCAGTGAAATGT-----
>SNPs
---------S------------------S----------S--------S-SSSSSSS-----------------------
----------------S---------S--------------S--------S----SSSS------S--------------
--SSS------------------------S------S----S-------------------SSSSSSSS---------S-
------------------------S-----------------S---S-S-------------S--------S--------
-----S---------------------S--------------------------------------------S-------
S-------------------------S-----------------------------------------------------
--S-------------------------S--------S--S---------------------------------------
--------SS----------------------------------------------------------------------
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-----------------------------------------------SSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
---------------S----------S--S--------------------------------------------------
--------------------------------------------------S-------S-----------------S---
-------------S------------------------------------S--------------------------S--
---S-----------S---------------------------SSSSSS------------S-----------------S
------------------------------------S---S-----------------S---------------------
---------------------------------------------------------------S----------------
----S------------------------------S-----SS----------------------S--------------
---------------S--S---------------S-------------------SS-----------------S------
-------------------------------------------------S-----S------------------------
----------------------------------------S-----------------S---------------------
-----S-------------------------------------------------------------------SSSS---
---------------------S----------------------------------------------------------
----------------------S---------------------------------------------------S-----
--S---------------------------------------------------------------------S-------
-------------------------S----------------------------------------------------S-
---------------------------------------------------S-------SSS------------------
-------------S-----------------------------------------------------S------------
-------------------------------------------S-----------------------------S------
------------------------------------------------S--------------------S----------
-----------------S--S-----------------------------------------------------------
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-----------------------S---------------------------------SSSS
>forward_949
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-------------------------------------------------GTAGTGAAGCATGGTGGGCT-----------
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>reverse_1846
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-----GCTGTCATGGTTGGACTCCG-------------------------------------------------------
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